51
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Cohen ZP, Brevik K, Chen YH, Hawthorne DJ, Weibel BD, Schoville SD. Elevated rates of positive selection drive the evolution of pestiferousness in the Colorado potato beetle (Leptinotarsa decemlineata, Say). Mol Ecol 2020; 30:237-254. [PMID: 33095936 DOI: 10.1111/mec.15703] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 09/28/2020] [Accepted: 10/15/2020] [Indexed: 12/16/2022]
Abstract
Contextualizing evolutionary history and identifying genomic features of an insect that might contribute to its pest status is important in developing early detection and control tactics. In order to understand the evolution of pestiferousness, which we define as the accumulation of traits that contribute to an insect population's success in an agroecosystem, we tested the importance of known genomic properties associated with rapid adaptation in the Colorado potato beetle (CPB), Leptinotarsa decemlineata Say. Within the leaf beetle genus Leptinotarsa, only CPB, and a few populations therein, has risen to pest status on cultivated nightshades, Solanum. Using whole genomes from ten closely related Leptinotarsa species native to the United States, we reconstructed a high-quality species tree and used this phylogenetic framework to assess evolutionary patterns in four genomic features of rapid adaptation: standing genetic variation, gene family expansion and contraction, transposable element abundance and location, and positive selection at protein-coding genes. Throughout approximately 20 million years of history, Leptinotarsa species show little evidence of gene family turnover and transposable element variation. However, there is a clear pattern of CPB experiencing higher rates of positive selection on protein-coding genes. We determine that these rates are associated with greater standing genetic variation due to larger effective population size, which supports the theory that the demographic history contributes to rates of protein evolution. Furthermore, we identify a suite of coding genes under positive selection that are putatively associated with pestiferousness in the Colorado potato beetle lineage. They are involved in the biological processes of xenobiotic detoxification, chemosensation and hormone function.
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Affiliation(s)
- Zachary P Cohen
- Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA
| | - Kristian Brevik
- Department of Plant and Soil Sciences, University of Vermont, Burlington, VT, USA
| | - Yolanda H Chen
- Department of Plant and Soil Sciences, University of Vermont, Burlington, VT, USA
| | - David J Hawthorne
- Department of Entomology, University of Maryland, College Park, MD, USA
| | - Benjamin D Weibel
- Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA
| | - Sean D Schoville
- Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA
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52
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Growth Rates of Lymantria dispar Larvae and Quercus robur Seedlings at Elevated CO2 Concentration and Phytophthora plurivora Infection. FORESTS 2020. [DOI: 10.3390/f11101059] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Interactions between plants, insects and pathogens are complex and not sufficiently understood in the context of climate change. In this study, the impact of a root pathogen on a leaf-eating insect hosted by a tree species at elevated CO2 concentration is reported for the first time. The combined and isolated effects of CO2 and infection by the root pathogen Phytophthora plurivora on English oak (Quercus robur) seedlings were used to assess growth rates of plants and of gypsy moth (Lymantria dispar) larvae. For this purpose, two Q. robur provenances (Belgrade and Sombor) were used. At ambient CO2 concentration, the relative growth rates of larvae consuming leaves of plants infected by P. plurivora was higher than those consuming non-infected plants. However, at elevated CO2 concentration (1000 ppm) higher relative growth rates were detected in the larvae consuming the leaves of non-infected plants. At ambient CO2 concentration, lower growth rates were recorded in L. dispar larvae hosted in Q. robur from Belgrade in comparison to larvae hosted in Q. robur from Sombor. However, at elevated CO2 concentration, similar growth rates irrespective of the provenance were observed. Defoliation by the gypsy moth did not influence the growth of plants while P. plurivora infection significantly reduced tree height in seedlings from Belgrade. The results confirm that a rise of CO2 concentration in the atmosphere modifies the existing interactions between P. plurivora, Q. robur, and L. dispar. Moreover, the influence of the tree provenances on both herbivore and plant performance at elevated CO2 concentrations suggests a potential for increasing forest resilience through breeding.
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53
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Singer SD, Chatterton S, Soolanayakanahally RY, Subedi U, Chen G, Acharya SN. Potential effects of a high CO 2 future on leguminous species. PLANT-ENVIRONMENT INTERACTIONS (HOBOKEN, N.J.) 2020; 1:67-94. [PMID: 37283729 PMCID: PMC10168062 DOI: 10.1002/pei3.10009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 01/07/2020] [Accepted: 01/13/2020] [Indexed: 06/08/2023]
Abstract
Legumes provide an important source of food and feed due to their high protein levels and many health benefits, and also impart environmental and agronomic advantages as a consequence of their ability to fix nitrogen through their symbiotic relationship with rhizobia. As a result of our growing population, the demand for products derived from legumes will likely expand considerably in coming years. Since there is little scope for increasing production area, improving the productivity of such crops in the face of climate change will be essential. While a growing number of studies have assessed the effects of climate change on legume yield, there is a paucity of information regarding the direct impact of elevated CO2 concentration (e[CO2]) itself, which is a main driver of climate change and has a substantial physiological effect on plants. In this review, we discuss current knowledge regarding the influence of e[CO2] on the photosynthetic process, as well as biomass production, seed yield, quality, and stress tolerance in legumes, and examine how these responses differ from those observed in non-nodulating plants. Although these relationships are proving to be extremely complex, mounting evidence suggests that under limiting conditions, overall declines in many of these parameters could ensue. While further research will be required to unravel precise mechanisms underlying e[CO2] responses of legumes, it is clear that integrating such knowledge into legume breeding programs will be indispensable for achieving yield gains by harnessing the potential positive effects, and minimizing the detrimental impacts, of CO2 in the future.
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Affiliation(s)
- Stacy D. Singer
- Agriculture and Agri‐Food CanadaLethbridge Research and Development CentreLethbridgeABCanada
| | - Syama Chatterton
- Agriculture and Agri‐Food CanadaLethbridge Research and Development CentreLethbridgeABCanada
| | | | - Udaya Subedi
- Agriculture and Agri‐Food CanadaLethbridge Research and Development CentreLethbridgeABCanada
- Department of Agricultural, Food and Nutritional ScienceUniversity of AlbertaEdmontonABCanada
| | - Guanqun Chen
- Department of Agricultural, Food and Nutritional ScienceUniversity of AlbertaEdmontonABCanada
| | - Surya N. Acharya
- Agriculture and Agri‐Food CanadaLethbridge Research and Development CentreLethbridgeABCanada
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54
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Arbona V, Ximénez-Embún MG, Echavarri-Muñoz A, Martin-Sánchez M, Gómez-Cadenas A, Ortego F, González-Guzmán M. Early Molecular Responses of Tomato to Combined Moderate Water Stress and Tomato Red Spider Mite Tetranychus evansi Attack. PLANTS (BASEL, SWITZERLAND) 2020; 9:plants9091131. [PMID: 32878349 PMCID: PMC7570366 DOI: 10.3390/plants9091131] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 08/25/2020] [Accepted: 08/28/2020] [Indexed: 05/25/2023]
Abstract
Interaction between plants and their environment is changing as a consequence of the climate change and global warming, increasing the performance and dispersal of some pest species which become invasive species. Tetranychus evansi also known as the tomato red spider mite, is an invasive species which has been reported to increase its performance when feeding in the tomato cultivar Moneymaker (MM) under water deficit conditions. In order to clarify the underlying molecular events involved, we examined early plant molecular changes occurring on MM during T. evansi infestation alone or in combination with moderate drought stress. Hormonal profiling of MM plants showed an increase in abscisic acid (ABA) levels in drought-stressed plants while salicylic acid (SA) levels were higher in drought-stressed plants infested with T. evansi, indicating that SA is involved in the regulation of plant responses to this stress combination. Changes in the expression of ABA-dependent DREB2, NCED1, and RAB18 genes confirmed the presence of drought-dependent molecular responses in tomato plants and indicated that these responses could be modulated by the tomato red spider mite. Tomato metabolic profiling identified 42 differentially altered compounds produced by T. evansi attack, moderate drought stress, and/or their combination, reinforcing the idea of putative manipulation of tomato plant responses by tomato red spider mite. Altogether, these results indicate that the tomato red spider mite acts modulating plant responses to moderate drought stress by interfering with the ABA and SA hormonal responses, providing new insights into the early events occurring on plant biotic and abiotic stress interaction.
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Affiliation(s)
- Vicent Arbona
- Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, 12071 Castelló de la Plana, Spain; (V.A.); (A.G.-C.)
| | - Miguel G. Ximénez-Embún
- Departamento de Biotecnología Microbiana y de Plantas, Centro de Investigaciones Biológicas Margarita Salas, CSIC, 28040 Madrid, Spain; (M.G.X.-E.); (A.E.-M.); (M.M.-S.); (F.O.)
| | - Alberto Echavarri-Muñoz
- Departamento de Biotecnología Microbiana y de Plantas, Centro de Investigaciones Biológicas Margarita Salas, CSIC, 28040 Madrid, Spain; (M.G.X.-E.); (A.E.-M.); (M.M.-S.); (F.O.)
| | - Marcos Martin-Sánchez
- Departamento de Biotecnología Microbiana y de Plantas, Centro de Investigaciones Biológicas Margarita Salas, CSIC, 28040 Madrid, Spain; (M.G.X.-E.); (A.E.-M.); (M.M.-S.); (F.O.)
| | - Aurelio Gómez-Cadenas
- Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, 12071 Castelló de la Plana, Spain; (V.A.); (A.G.-C.)
| | - Félix Ortego
- Departamento de Biotecnología Microbiana y de Plantas, Centro de Investigaciones Biológicas Margarita Salas, CSIC, 28040 Madrid, Spain; (M.G.X.-E.); (A.E.-M.); (M.M.-S.); (F.O.)
| | - Miguel González-Guzmán
- Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, 12071 Castelló de la Plana, Spain; (V.A.); (A.G.-C.)
- Departamento de Biotecnología Microbiana y de Plantas, Centro de Investigaciones Biológicas Margarita Salas, CSIC, 28040 Madrid, Spain; (M.G.X.-E.); (A.E.-M.); (M.M.-S.); (F.O.)
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55
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Chaloner TM, Gurr SJ, Bebber DP. Geometry and evolution of the ecological niche in plant-associated microbes. Nat Commun 2020; 11:2955. [PMID: 32528123 PMCID: PMC7289842 DOI: 10.1038/s41467-020-16778-5] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 05/21/2020] [Indexed: 12/17/2022] Open
Abstract
The ecological niche can be thought of as a volume in multidimensional space, where each dimension describes an abiotic condition or biotic resource required by a species. The shape, size, and evolution of this volume strongly determine interactions among species and influence their current and potential geographical distributions, but the geometry of niches is poorly understood. Here, we analyse temperature response functions and host plant ranges for hundreds of potentially destructive plant-associated fungi and oomycetes. We demonstrate that niche specialization is uncorrelated on abiotic (i.e. temperature response) and biotic (i.e. host range) axes, that host interactions restrict fundamental niche breadth to form the realized niche, and that both abiotic and biotic niches show limited phylogenetic constraint. The ecological terms ‘generalist’ and ‘specialist’ therefore do not apply to these microbes, as specialization evolves independently on different niche axes. This adaptability makes plant pathogens a formidable threat to agriculture and forestry. The ecological niche of host-associated microbes is defined by both abiotic and biotic dimensions. Here the authors analyse published data on fungal and oomycete pathogens of plants, demonstrating that specialization can evolve independently on abiotic and biotic axes and that interactions with host plants reduce thermal niche breadth.
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Affiliation(s)
- Thomas M Chaloner
- Department of Biosciences, University of Exeter, Exeter, EX4 4QJ, UK
| | - Sarah J Gurr
- Department of Biosciences, University of Exeter, Exeter, EX4 4QJ, UK.,Department of Biosciences, Utrecht University, Paduallaan, 8, Netherlands
| | - Daniel P Bebber
- Department of Biosciences, University of Exeter, Exeter, EX4 4QJ, UK.
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56
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Abstract
Climate change has significantly altered species distributions in the wild and has the potential to affect the interactions between pests and diseases and their human, animal and plant hosts. While several studies have projected changes in disease distributions in the future, responses to historical climate change are poorly understood. Such analyses are required to dissect the relative contributions of climate change, host availability and dispersal to the emergence of pests and diseases. Here, we model the influence of climate change on the most damaging disease of a major tropical food plant, Black Sigatoka disease of banana. Black Sigatoka emerged from Asia in the late twentieth Century and has recently completed its invasion of Latin American and Caribbean banana-growing areas. We parametrize an infection model with published experimental data and drive the model with hourly microclimate data from a global climate reanalysis dataset. We define infection risk as the sum of the number of modelled hourly spore cohorts that infect a leaf over a time interval. The model shows that infection risk has increased by a median of 44.2% across banana-growing areas of Latin America and the Caribbean since the 1960s, due to increasing canopy wetness and improving temperature conditions for the pathogen. Thus, while increasing banana production and global trade have probably facilitated Black Sigatoka establishment and spread, climate change has made the region increasingly conducive for plant infection. This article is part of the theme issue ‘Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes’. This issue is linked with the subsequent theme issue ‘Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control’.
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Affiliation(s)
- Daniel P Bebber
- Department of Biosciences, University of Exeter , EX4 4QD Exeter , UK
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57
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Frank SD, Just MG. Can Cities Activate Sleeper Species and Predict Future Forest Pests? A Case Study of Scale Insects. INSECTS 2020; 11:E142. [PMID: 32106554 PMCID: PMC7142728 DOI: 10.3390/insects11030142] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 02/11/2020] [Accepted: 02/19/2020] [Indexed: 11/16/2022]
Abstract
Sleeper species are innocuous native or naturalized species that exhibit invasive characteristics and become pests in response to environmental change. Climate warming is expected to increase arthropod damage in forests, in part, by transforming innocuous herbivores into severe pests: awakening sleeper species. Urban areas are warmer than natural areas due to the urban heat island effect and so the trees and pests in cities already experience temperatures predicted to occur in 50-100 years. We posit that arthropod species that become pests of urban trees are those that benefit from warming and thus should be monitored as potential sleeper species in forests. We illustrate this with two case studies of scale insects that are important pests of urban trees in parts of the US. Melanaspis tenebricosa and Parthenolecanium quercifex are geographically native to the US but take on invasive characteristics such as higher survival and reproduction and become disconnected from natural enemies on urban trees due to the urban heat island effect. This allows them to reach high densities and damage their host trees. Parthenolecanium quercifex density increases up to 12 times on urban willow oaks with just 2 °C of warming due to higher survival and adaptation to warmer temperatures. The urban heat island effect also creates a phenological mismatch between P. quercifex and its parasitoid complex, and so egg production is higher. Melanaspis tenebricosa density can increase 300 times on urban red maples with 2.5 °C of warming. This too is due to direct effects of warmer temperatures on survival and fecundity but M. tenebricosa also benefits from the drought stress incurred by warmer urban trees. These effects combine to increase M. tenebricosa density in forests as well as on urban trees at latitudes higher than its native range. We illustrate how cities provide a unique opportunity to study the complex effects of warming on insect herbivores. Studying pestilent urban species could be a pragmatic approach for identifying and preparing for sleeper species.
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Affiliation(s)
- Steven D. Frank
- Department of Entomology and Plant Pathology, Campus Box 7613, North Carolina State University, Raleigh, NC 27695, USA;
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58
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Just MG, Frank SD. Thermal Tolerance of Gloomy Scale (Hemiptera: Diaspididae) in the Eastern United States. ENVIRONMENTAL ENTOMOLOGY 2020; 49:104-114. [PMID: 31904081 DOI: 10.1093/ee/nvz154] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Indexed: 06/10/2023]
Abstract
An insect species' geographic distribution is probably delimited in part by physiological tolerances of environmental temperatures. Gloomy scale (Melanaspis tenebricosa (Comstock)) is a native insect herbivore in eastern U.S. forests. In eastern U.S. cities, where temperatures are warmer than nearby natural areas, M. tenebricosa is a primary pest of red maple (Acer rubrum L.; Sapindales: Sapindaceae) With warming, M. tenebricosa may spread to new cities or become pestilent in forests. To better understand current and future M. tenebricosa distribution boundaries, we examined M. tenebricosa thermal tolerance under laboratory conditions. We selected five hot and five cold experimental temperatures representative of locations in the known M. tenebricosa distribution. We built models to predict scale mortality based on duration of exposure to warm or cold experimental temperatures. We then used these models to estimate upper and lower lethal durations, i.e., temperature exposure durations that result in 50% mortality. We tested the thermal tolerance for M. tenebricosa populations from northern, mid, and southern locations of the species' known distribution. Scales were more heat and cold tolerant of temperatures representative of the midlatitudes of their distribution where their densities are the greatest. Moreover, the scale population from the northern distribution boundary could tolerate cold temperatures from the northern boundary for twice as long as the population collected near the southern boundary. Our results suggest that as the climate warms the M. tenebricosa distribution may expand poleward, but experience a contraction at its southern boundary.
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Affiliation(s)
- Michael G Just
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC
| | - Steven D Frank
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC
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59
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Ristaino JB. The Importance of Mycological and Plant Herbaria in Tracking Plant Killers. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2019.00521] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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60
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Sun X, Wu P, Zhao C, Zheng F, Hu C, Lu X, Xu G. Protein profiling analysis based on matrix-assisted laser desorption/ionization-Fourier transform ion cyclotron resonance mass spectrometry and its application in typing Streptomyces isolates. Talanta 2020; 208:120439. [PMID: 31816710 DOI: 10.1016/j.talanta.2019.120439] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 09/22/2019] [Accepted: 10/03/2019] [Indexed: 10/25/2022]
Abstract
Marine Streptomyces is a potential source of novel bioactive natural products in medicine and agriculture. The current discrimination and screening method of Streptomyces isolates is not accurate and time-consuming, and a novel method is necessary. In this study, a protein profiling method based on an ultrahigh resolution 15 T Matrix-assisted laser desorption/ionization-Fourier transform ion cyclotron resonance mass spectrometry (MALDI-FTICR MS) was established and applied for differentiation and bioactivity screening of marine Streptomyces isolates. To obtain robust protein profiling, the effects of the protein extraction method, the matrix-solvent, the sample deposition mode, and the culture time of isolates on protein profiling were thoroughly studied, the optimal conditions were obtained. To evaluate the performance of the developed MALDI-FTICR MS method, MALDI-time of flight (TOF) MS and 16S rRNA were applied in parallel to analyze 25 marine Streptomyces isolates. We found that the clustering result of MALDI-FTICR MS was more similar to that of 16S rRNA than MALDI-TOF MS. And MALDI-FTICR MS could effectively indicate the antibacterial activity of Streptomyces isolates against three plant pathogenic bacteria including Xanthomonas campestris, Xanthomonas oryzae and Erwinia carotovora. Furthermore, a differential protein/peptide was defined and successfully applied to predict antibacterial activity of blind samples. This study demonstrated that MALDI-FTICR MS has great potential to discriminate and screen complex microorganisms, especially those closely related strains.
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Affiliation(s)
- Xiaoshan Sun
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Peichun Wu
- Marine Bioengineering Group, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Chunxia Zhao
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Fujian Zheng
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Chunxiu Hu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Xin Lu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Guowang Xu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
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61
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Gago-Zachert S, Schuck J, Weinholdt C, Knoblich M, Pantaleo V, Grosse I, Gursinsky T, Behrens SE. Highly efficacious antiviral protection of plants by small interfering RNAs identified in vitro. Nucleic Acids Res 2019; 47:9343-9357. [PMID: 31433052 PMCID: PMC6755098 DOI: 10.1093/nar/gkz678] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Revised: 06/21/2019] [Accepted: 08/02/2019] [Indexed: 01/09/2023] Open
Abstract
In response to a viral infection, the plant’s RNA silencing machinery processes viral RNAs into a huge number of small interfering RNAs (siRNAs). However, a very few of these siRNAs actually interfere with viral replication. A reliable approach to identify these immunologically effective siRNAs (esiRNAs) and to define the characteristics underlying their activity has not been available so far. Here, we develop a novel screening approach that enables a rapid functional identification of antiviral esiRNAs. Tests on the efficacy of such identified esiRNAs of a model virus achieved a virtual full protection of plants against a massive subsequent infection in transient applications. We find that the functionality of esiRNAs depends crucially on two properties: the binding affinity to Argonaute proteins and the ability to access the target RNA. The ability to rapidly identify functional esiRNAs could be of great benefit for all RNA silencing-based plant protection measures against viruses and other pathogens.
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Affiliation(s)
- Selma Gago-Zachert
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany.,Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Halle/Saale D-06120, Germany
| | - Jana Schuck
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany
| | - Claus Weinholdt
- Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany
| | - Marie Knoblich
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany
| | - Vitantonio Pantaleo
- Institute for Sustainable Plant Protection-Consiglio Nazionale delle Ricerche, Research Unit of Bari, Bari I-70126, Italy
| | - Ivo Grosse
- Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig D-04103, Germany
| | - Torsten Gursinsky
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany
| | - Sven-Erik Behrens
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale D-06120, Germany
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62
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Luquet M, Hullé M, Simon J, Parisey N, Buchard C, Jaloux B. Relative importance of long-term changes in climate and land-use on the phenology and abundance of legume crop specialist and generalist aphids. INSECT SCIENCE 2019; 26:881-896. [PMID: 29513406 PMCID: PMC7379299 DOI: 10.1111/1744-7917.12585] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 01/19/2018] [Accepted: 01/31/2018] [Indexed: 06/12/2023]
Abstract
Insect populations are prone to respond to global changes through shifts in phenology, distribution and abundance. However, global changes cover several factors such as climate and land-use, the relative importance of these being largely unknown. Here, we aim at disentangling the effects of climate, land-use, and geographical drivers on aphid abundance and phenology in France, at a regional scale and over the last 40 years. We used aerial data obtained from suction traps between 1978 and 2015 on five aphid species varying in their degree of specialization to legumes, along with climate, legume crop area and geographical data. Effects of environmental and geographical variables on aphid annual abundance and spring migration dates were analyzed using generalized linear mixed models. We found that within the last four decades, aphids have advanced their spring migration by a month, mostly due to the increase in temperature early in the year, and their abundance decreased by half on average, presumably in response to a combination of factors. The influence of legume crop area decreased with the degree of specialization of the aphid species to such crops. The effect of geographical variation was high even when controlling for environmental variables, suggesting that many other spatially structured processes act on aphid population characteristics. Multifactorial analyses helped to partition the effects of different global change drivers. Climate and land-use changes have strong effects on aphid populations, with important implications for future agriculture. Additionally, trait-based response variation could have major consequences at the community scale.
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Affiliation(s)
- Martin Luquet
- Agrocampus Ouest, Centre of Angers, Institute of GeneticsEnvironment and Plant Protection (IGEPP—Joint Research Unit 1349)AngersFrance
| | - Maurice Hullé
- INRA, Institute of GeneticsEnvironment and Plant Protection (IGEPP—Joint Research Unit 1349)Le RheuFrance
| | - Jean‐Christophe Simon
- INRA, Institute of GeneticsEnvironment and Plant Protection (IGEPP—Joint Research Unit 1349)Le RheuFrance
| | - Nicolas Parisey
- INRA, Institute of GeneticsEnvironment and Plant Protection (IGEPP—Joint Research Unit 1349)Le RheuFrance
| | - Christelle Buchard
- INRA, Institute of GeneticsEnvironment and Plant Protection (IGEPP—Joint Research Unit 1349)Le RheuFrance
| | - Bruno Jaloux
- Agrocampus Ouest, Centre of Angers, Institute of GeneticsEnvironment and Plant Protection (IGEPP—Joint Research Unit 1349)AngersFrance
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63
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Varma V, Bebber DP. Climate change impacts on banana yields around the world. NATURE CLIMATE CHANGE 2019; 9:752-757. [PMID: 31579401 PMCID: PMC6774771 DOI: 10.1038/s41558-019-0559-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Nutritional diversity is a key element of food security1-3. However, research on the effects of climate change on food security has, thus far, focussed on the major food grains4-8, while the response of other crops, particularly those that play an important role in the developing world, are poorly understood. Bananas are a staple food and a major export commodity for many tropical nations9. Here we show that for 27 countries - accounting for 86% of global dessert banana production - a changing climate since 1961 has increased yields by an average of 1.37 T.ha-1. Past gains have been largely ubiquitous across the countries assessed and African producers will continue to see yield increases into the future. However, global yield gains could be dampened or disappear in the future, reducing to 0.59 T.ha-1and 0.19 T.ha-1by 2050 under the RCP 4.5 and 8.5 climate scenarios, respectively, driven by declining yields amongst the largest producers and exporters. By quantifying climate-driven and technology-driven influences on yield, we also identify countries at risk from climate change and those capable of mitigating its effects, or capitalising on its benefits.
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Affiliation(s)
- Varun Varma
- Department of Biosciences, University of Exeter, Exeter EX4 4QJ, UK
| | - Daniel P. Bebber
- Department of Biosciences, University of Exeter, Exeter EX4 4QJ, UK
- Corresponding author: Daniel P. Bebber, , tel. +44 1392 725851
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Nguyen HT, Trinh QP, Couvreur M, Singh PR, Decraemer W, Bert W. First Report of Scutellonema brachyurus (Steiner, 1938) Andrassy, 1958 and Occurrence of Meloidogyne incognita (Kofoid & White, 1919) Chitwood, 1949 in Belgium. J Nematol 2019; 51:e2019-62. [PMID: 34179809 PMCID: PMC6909387 DOI: 10.21307/jofnem-2019-062] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Indexed: 11/22/2022] Open
Abstract
A study of plant-parasitic nematodes in the Botanical garden at Ghent University in Belgium revealed the presence of two tropical nematode species, i.e. Scutellonema brachyurus and Meloidogyne incognita. Scutellonema brachyurus was recovered, only once, for the first time in Belgium from Musa basjoo and is morphologically characterized. M. incognita, forming galls on Hedychium greenii, was recovered in all seasons over three consecutive years and is morphologically and molecularly characterized. Although no unequivocal evidence was found to indicate that these nematodes pose a current threat in Belgium, in the light of climate change, it is crucial to improve our knowledge of potential tropical nematode activity in more Northern countries.
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Affiliation(s)
- Huu Tien Nguyen
- Institute of Ecology and Biological Resource, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.,Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
| | - Quang Phap Trinh
- Institute of Ecology and Biological Resource, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam
| | - Marjolein Couvreur
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
| | | | - Wilfrida Decraemer
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
| | - Wim Bert
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
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Pixley KV, Falck-Zepeda JB, Giller KE, Glenna LL, Gould F, Mallory-Smith CA, Stelly DM, Stewart CN. Genome Editing, Gene Drives, and Synthetic Biology: Will They Contribute to Disease-Resistant Crops, and Who Will Benefit? ANNUAL REVIEW OF PHYTOPATHOLOGY 2019; 57:165-188. [PMID: 31150590 DOI: 10.1146/annurev-phyto-080417-045954] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Genetically engineered crops have been grown for more than 20 years, resulting in widespread albeit variable benefits for farmers and consumers. We review current, likely, and potential genetic engineering (GE) applications for the development of disease-resistant crop cultivars. Gene editing, gene drives, and synthetic biology offer novel opportunities to control viral, bacterial, and fungal pathogens, parasitic weeds, and insect vectors of plant pathogens. We conclude that there will be no shortage of GE applications totackle disease resistance and other farmer and consumer priorities for agricultural crops. Beyond reviewing scientific prospects for genetically engineered crops, we address the social institutional forces that are commonly overlooked by biological scientists. Intellectual property regimes, technology regulatory frameworks, the balance of funding between public- and private-sector research, and advocacy by concerned civil society groups interact to define who uses which GE technologies, on which crops, and for the benefit of whom. Ensuring equitable access to the benefits of genetically engineered crops requires affirmative policies, targeted investments, and excellent science.
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Affiliation(s)
- Kevin V Pixley
- International Maize and Wheat Improvement Center (CIMMYT), 56237 Texcoco, Mexico;
| | - Jose B Falck-Zepeda
- International Food Policy Research Institute (IFPRI), Washington, DC 20005-3915, USA
| | - Ken E Giller
- Plant Production Systems Group, Wageningen University & Research (WUR), 6700 AK Wageningen, The Netherlands
| | - Leland L Glenna
- Department of Agricultural Economics, Sociology, and Education, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Fred Gould
- Genetic Engineering and Society Center and Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, USA
| | - Carol A Mallory-Smith
- Department of Crop and Soil Science, Oregon State University, Corvallis, Oregon 97331, USA
| | - David M Stelly
- Department of Soil and Crop Sciences, Texas A&M University, College Station, Texas 77843-2474, USA
| | - C Neal Stewart
- Department of Plant Sciences and Center for Agricultural Synthetic Biology, University of Tennessee, Knoxville, Tennessee 37996, USA
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Wilkinson SW, Magerøy MH, López Sánchez A, Smith LM, Furci L, Cotton TEA, Krokene P, Ton J. Surviving in a Hostile World: Plant Strategies to Resist Pests and Diseases. ANNUAL REVIEW OF PHYTOPATHOLOGY 2019; 57:505-529. [PMID: 31470772 DOI: 10.1146/annurev-phyto-082718-095959] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
As primary producers, plants are under constant pressure to defend themselves against potentially deadly pathogens and herbivores. In this review, we describe short- and long-term strategies that enable plants to cope with these stresses. Apart from internal immunological strategies that involve physiological and (epi)genetic modifications at the cellular level, plants also employ external strategies that rely on recruitment of beneficial organisms. We discuss these strategies along a gradient of increasing timescales, ranging from rapid immune responses that are initiated within seconds to (epi)genetic adaptations that occur over multiple plant generations. We cover the latest insights into the mechanistic and evolutionary underpinnings of these strategies and present explanatory models. Finally, we discuss how knowledge from short-lived model species can be translated to economically and ecologically important perennials to exploit adaptive plant strategies and mitigate future impacts of pests and diseases in an increasingly interconnected and changing world.
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Affiliation(s)
- Samuel W Wilkinson
- Plant Production and Protection Institute and Department of Animal and Plant Sciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom;
- Department of Molecular Plant Biology, Division for Biotechnology and Plant Health, Norwegian Institute for Bioeconomy Research, 1431 Ås, Norway
| | - Melissa H Magerøy
- Department of Molecular Plant Biology, Division for Biotechnology and Plant Health, Norwegian Institute for Bioeconomy Research, 1431 Ås, Norway
| | - Ana López Sánchez
- Plant Production and Protection Institute and Department of Animal and Plant Sciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom;
- Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología, Campus de Cantoblanco, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Lisa M Smith
- Plant Production and Protection Institute and Department of Animal and Plant Sciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom;
| | - Leonardo Furci
- Plant Production and Protection Institute and Department of Animal and Plant Sciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom;
| | - T E Anne Cotton
- Plant Production and Protection Institute and Department of Animal and Plant Sciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom;
| | - Paal Krokene
- Department of Molecular Plant Biology, Division for Biotechnology and Plant Health, Norwegian Institute for Bioeconomy Research, 1431 Ås, Norway
| | - Jurriaan Ton
- Plant Production and Protection Institute and Department of Animal and Plant Sciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom;
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Ayliffe M, Sørensen CK. Plant nonhost resistance: paradigms and new environments. CURRENT OPINION IN PLANT BIOLOGY 2019; 50:104-113. [PMID: 31075541 DOI: 10.1016/j.pbi.2019.03.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 03/08/2019] [Accepted: 03/25/2019] [Indexed: 05/25/2023]
Abstract
Nonhost resistance (NHR) protects plants from a large and diverse array of potential phytopathogens. Each phytopathogen can parasitise some plant species, but most plant species are nonhosts that are innately immune due to a series of physical, chemical and inducible defenses these nonadapted pathogens cannot overcome. New evidence supports the NHR paradigm that posits the inability of potential pathogens to colonise nonhost plants is frequently due to molecular incompatibility between pathogen virulence factors and plant cellular targets. While NHR is durable, it is not insurmountable. Environmental changes can facilitate pathogen host jumps or alternatively result in new encounters between previously isolated plant species and pathogens. Climate change is predicted to substantially alter the current distribution of plants and their pathogens which could result in parasitism of new plant species.
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Affiliation(s)
- Michael Ayliffe
- CSIRO Agriculture and Food, Box 1700, Clunies Ross Street, Canberra, ACT 2601, Australia.
| | - Chris K Sørensen
- Department of Agroecology, Aarhus University, Forsøgsvej 1, DK-4200, Slagelse, Denmark
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68
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Bebber DP, Field E, Gui H, Mortimer P, Holmes T, Gurr SJ. Many unreported crop pests and pathogens are probably already present. GLOBAL CHANGE BIOLOGY 2019; 25:2703-2713. [PMID: 31237022 DOI: 10.1101/519223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2019] [Revised: 04/01/2019] [Accepted: 05/09/2019] [Indexed: 05/22/2023]
Abstract
Invasive species threaten global biodiversity, food security and ecosystem function. Such incursions present challenges to agriculture where invasive species cause significant crop damage and require major economic investment to control production losses. Pest risk analysis (PRA) is key to prioritize agricultural biosecurity efforts, but is hampered by incomplete knowledge of current crop pest and pathogen distributions. Here, we develop predictive models of current pest distributions and test these models using new observations at subnational resolution. We apply generalized linear models (GLM) to estimate presence probabilities for 1,739 crop pests in the CABI pest distribution database. We test model predictions for 100 unobserved pest occurrences in the People's Republic of China (PRC), against observations of these pests abstracted from the Chinese literature. This resource has hitherto been omitted from databases on global pest distributions. Finally, we predict occurrences of all unobserved pests globally. Presence probability increases with host presence, presence in neighbouring regions, per capita GDP and global prevalence. Presence probability decreases with mean distance from coast and known host number per pest. The models are good predictors of pest presence in provinces of the PRC, with area under the ROC curve (AUC) values of 0.75-0.76. Large numbers of currently unobserved, but probably present pests (defined here as unreported pests with a predicted presence probability >0.75), are predicted in China, India, southern Brazil and some countries of the former USSR. We show that GLMs can predict presences of pseudoabsent pests at subnational resolution. The Chinese literature has been largely inaccessible to Western academia but contains important information that can support PRA. Prior studies have often assumed that unreported pests in a global distribution database represent a true absence. Our analysis provides a method for quantifying pseudoabsences to enable improved PRA and species distribution modelling.
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Affiliation(s)
| | - Elsa Field
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Heng Gui
- Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, People's Republic of China
| | - Peter Mortimer
- Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, People's Republic of China
| | | | - Sarah J Gurr
- Department of Biosciences, University of Exeter, Exeter, UK
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Bebber DP, Field E, Gui H, Mortimer P, Holmes T, Gurr SJ. Many unreported crop pests and pathogens are probably already present. GLOBAL CHANGE BIOLOGY 2019; 25:2703-2713. [PMID: 31237022 DOI: 10.1111/gcb.14698] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2019] [Revised: 04/01/2019] [Accepted: 05/09/2019] [Indexed: 05/20/2023]
Abstract
Invasive species threaten global biodiversity, food security and ecosystem function. Such incursions present challenges to agriculture where invasive species cause significant crop damage and require major economic investment to control production losses. Pest risk analysis (PRA) is key to prioritize agricultural biosecurity efforts, but is hampered by incomplete knowledge of current crop pest and pathogen distributions. Here, we develop predictive models of current pest distributions and test these models using new observations at subnational resolution. We apply generalized linear models (GLM) to estimate presence probabilities for 1,739 crop pests in the CABI pest distribution database. We test model predictions for 100 unobserved pest occurrences in the People's Republic of China (PRC), against observations of these pests abstracted from the Chinese literature. This resource has hitherto been omitted from databases on global pest distributions. Finally, we predict occurrences of all unobserved pests globally. Presence probability increases with host presence, presence in neighbouring regions, per capita GDP and global prevalence. Presence probability decreases with mean distance from coast and known host number per pest. The models are good predictors of pest presence in provinces of the PRC, with area under the ROC curve (AUC) values of 0.75-0.76. Large numbers of currently unobserved, but probably present pests (defined here as unreported pests with a predicted presence probability >0.75), are predicted in China, India, southern Brazil and some countries of the former USSR. We show that GLMs can predict presences of pseudoabsent pests at subnational resolution. The Chinese literature has been largely inaccessible to Western academia but contains important information that can support PRA. Prior studies have often assumed that unreported pests in a global distribution database represent a true absence. Our analysis provides a method for quantifying pseudoabsences to enable improved PRA and species distribution modelling.
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Affiliation(s)
| | - Elsa Field
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Heng Gui
- Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, People's Republic of China
| | - Peter Mortimer
- Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, People's Republic of China
| | | | - Sarah J Gurr
- Department of Biosciences, University of Exeter, Exeter, UK
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Rubio-Meléndez ME, Barrios-SanMartin J, Pina-Castro FE, Figueroa CC, Ramirez CC. Asexual reproduction of a few genotypes favored the invasion of the cereal aphid Rhopalosiphum padi in Chile. PeerJ 2019; 7:e7366. [PMID: 31388475 PMCID: PMC6662566 DOI: 10.7717/peerj.7366] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Accepted: 06/27/2019] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Aphids (Hemiptera: Aphididae) are insects with one of the highest potentials for invasion. Several aphid species are present globally due to introduction events; they represent important pests of agroecosystems. The bird cherry-oat aphid Rhopalosiphum padi (Linnaeus) is a major pest of cereals and pasture grasses worldwide. Here, we report the genetic features of populations of R. padi that colonize different cereal crops in central Chile. METHODS Rhopalosiphum padi individuals were collected in central Chile and genotyped at six microsatellite loci. The most frequent multilocus genotype (MLG) was then studied further to assess its reproductive performance across cereal hosts under laboratory conditions. RESULTS Populations of R. padi in Chile are characterized by a low clonal diversity (G/N = 62/377 = 0.16) and the overrepresentation of a few widely distributed MLGs. One of the MLGs constituted roughly half of the sample and was observed in all sampled populations at high frequencies. Furthermore, this putative aphid "superclone" exhibited variations in its reproductive performance on cereals most commonly cultivated in Chile. The sampled populations also exhibited weak signs of genetic differentiation among hosts and localities. Our findings suggest that (1) obligate parthenogenesis is the primary reproductive mode of R. padi in Chile in the sampled range and (2) its introduction involved the arrival of a few genotypes that multiplied asexually.
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Affiliation(s)
- María E. Rubio-Meléndez
- Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, Talca, Maule, Chile
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Maule, Chile
- Centro de Bioinformática y Simulación Molecular, Facultad de Ingeniería, Universidad de Talca, Talca, Maule, Chile
| | - Joceline Barrios-SanMartin
- Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, Talca, Maule, Chile
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Maule, Chile
| | - Felipe E. Pina-Castro
- Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, Talca, Maule, Chile
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Maule, Chile
| | - Christian C. Figueroa
- Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, Talca, Maule, Chile
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Maule, Chile
| | - Claudio C. Ramirez
- Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, Talca, Maule, Chile
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Maule, Chile
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Ke F, You S, Huang S, Chen W, Liu T, He W, Xie D, Li Q, Lin X, Vasseur L, Gurr GM, You M. Herbivore range expansion triggers adaptation in a subsequently-associated third trophic level species and shared microbial symbionts. Sci Rep 2019; 9:10314. [PMID: 31311998 PMCID: PMC6635496 DOI: 10.1038/s41598-019-46742-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Accepted: 06/14/2019] [Indexed: 01/12/2023] Open
Abstract
Invasive species may change the life history strategies, distribution, genetic configuration and trophic interactions of native species. The diamondback moth, Plutella xylostella L., is an invasive herbivore attacking cultivated and wild brassica plants worldwide. Here we present phylogeographic analyses of P. xylostella and one of its major parasitoids, Cotesia vestalis, using mitochondrial markers, revealing the genetic diversity and evolutionary history of these two species. We find evidence that C. vestalis originated in Southwest China, then adapted to P. xylostella as a new host by ecological sorting as P. xylostella expanded its geographic range into this region. Associated with the expansion of P. xylostella, Wolbachia symbionts were introduced into local populations of the parasitoid through horizontal transfer from its newly associated host. Insights into the evolutionary history and phylogeographic system of the herbivore and its parasitoid provide an important basis for better understanding the impacts of biological invasion on genetic configuration of local species.
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Affiliation(s)
- Fushi Ke
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Shijun You
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China.
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China.
| | - Sumei Huang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Weijun Chen
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Tiansheng Liu
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Weiyi He
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Dandan Xie
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Qiang Li
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Xijian Lin
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China
| | - Liette Vasseur
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Department of Biological Sciences, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, L2S 3A1, Canada
| | - Geoff M Gurr
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China
- Graham Centre, Charles Sturt University, Orange, NSW, 2800, Australia
| | - Minsheng You
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Joint International Research Laboratory of Ecological Pest Control, Ministry of Education, Fuzhou, 350002, China.
- Key Laboratory of Integrated Pest Management for Fujian-Taiwan Crops, Ministry of Agriculture, Fuzhou, 350002, China.
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Mohammed AAAH, Desneux N, Monticelli LS, Fan Y, Shi X, Guedes RNC, Gao X. Potential for insecticide-mediated shift in ecological dominance between two competing aphid species. CHEMOSPHERE 2019; 226:651-658. [PMID: 30965243 DOI: 10.1016/j.chemosphere.2019.03.114] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Revised: 03/15/2019] [Accepted: 03/16/2019] [Indexed: 06/09/2023]
Abstract
Competition is a key structuring component of biological communities, which is affected by both biotic and abiotic environmental stressors. Among the latter, anthropic stressors and particularly pesticides are noteworthy due to their intrinsic toxicity and large use in agroecosystems. However this issue has been scarcely documented so far. In this context, we carried out experiments under laboratory conditions to evaluate stress imposed by the neonicotinoid insecticide imidacloprid on intra and interspecific competition among two major wheat pest aphids. The bird cherry-oat aphid Rhopalosiphum padi L. and the English grain aphid Sitobion avenae F. were subjected to competition on wheat seedlings under varying density combinations of both species and subjected or not to imidacloprid exposure. Intraspecific competition does take place without insecticide exposure, but so does interspecific competition between both aphid species with R. padi prevailing over S. avenae. Imidacloprid interfered with both intra and interspecific competition suppressing the former and even the latter for up to 14 days, but not afterwards when a shift in dominance takes place favoring S. avenae over R. padi, in contrast with the interspecific competition without imidacloprid exposure. These findings hinted that insecticides are indeed able to mediate species interaction and competition influencing community structure and raising management concerns for favoring potential secondary pest outbreaks.
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Affiliation(s)
- Abd Allah A H Mohammed
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Nicolas Desneux
- INRA (French National Institute for Agricultural Research), Université Côte d'Azur, CNRS, UMR 1355-7254 Institute Sophia Agrobiotech, Sophia Antipolis 06903, France.
| | - Lucie S Monticelli
- INRA (French National Institute for Agricultural Research), Université Côte d'Azur, CNRS, UMR 1355-7254 Institute Sophia Agrobiotech, Sophia Antipolis 06903, France
| | - Yinjun Fan
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Xueyan Shi
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Raul N C Guedes
- Departamento de Entomologia, Universidade Federal de Viçosa, Viçosa, Minas Gerais 36570-900, Brazil
| | - Xiwu Gao
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing 100193, China.
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Martoni F, Armstrong KF. Acizzia errabunda sp. nov. and Ctenarytaina insularis sp. nov.: Descriptions of two new species of psyllids (Hemiptera: Psylloidea) discovered on exotic host plants in New Zealand. PLoS One 2019; 14:e0214220. [PMID: 30969983 PMCID: PMC6457481 DOI: 10.1371/journal.pone.0214220] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 03/08/2019] [Indexed: 11/18/2022] Open
Abstract
A recent molecular-based assessment of the psyllid fauna of New Zealand reported two genetically distinct, undescribed psyllid taxa on host plants not native to that country. Here, a morphological examination confirmed species-level variation that resulted in the description of two new psyllid species: Acizzia errabunda sp. nov. (Hemiptera: Psyllidae) from Acacia baileyana F. Muell and Ctenarytaina insularis sp. nov. (Hemiptera: Aphalaridae) from Syzygium smithii (Poir.) Nied. Furthermore, the examination of specimens from entomological collections and from observations recorded on an online database enabled a better understanding of the distribution and host plant associations of these psyllid species. The description of A. errabunda is based on material collected in both New Zealand and Australia from the same plant species, A. baileyana, whereas the psyllid C. insularis has been found to be present in Brunei and New Zealand on S. smithii and in New Caledonia on Melaleuca quinquenervia (Cav.) S. T. Blake.
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Affiliation(s)
- Francesco Martoni
- Bio-Protection Research Centre, Lincoln University, Lincoln, New Zealand
- * E-mail:
| | - Karen F. Armstrong
- Bio-Protection Research Centre, Lincoln University, Lincoln, New Zealand
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74
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Cuperlovic-Culf M, Vaughan MM, Vermillion K, Surendra A, Teresi J, McCormick SP. Effects of Atmospheric CO 2 Level on the Metabolic Response of Resistant and Susceptible Wheat to Fusarium graminearum Infection. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:379-391. [PMID: 30256178 DOI: 10.1094/mpmi-06-18-0161-r] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Rising atmospheric CO2 concentrations and associated climate changes are thought to have contributed to the steady increase of Fusarium head blight (FHB) on wheat. However, our understanding of precisely how elevated CO2 influences the defense response of wheat against Fusarium graminearum remains limited. In this study, we evaluated the metabolic profiles of susceptible (Norm) and moderately resistant (Alsen) spring wheat in response to whole-head inoculation with two deoxynivalenol (DON)-producing F. graminearum isolates (DON+), isolates 9F1 and Gz3639, and a DON-deficient (DON-) isolate (Gzt40) at ambient (400 ppm) and elevated (800 ppm) CO2 concentrations. The effects of elevated CO2 were dependent on both the Fusarium strain and the wheat variety, but metabolic differences in the host can explain the observed changes in F. graminearum biomass and DON accumulation. The complexity of abiotic and biotic stress interactions makes it difficult to determine if the observed metabolic changes in wheat are a result of CO2-induced changes in the host, the pathogen, or a combination of both. However, the effects of elevated CO2 were not dependent on DON production. Finally, we identified several metabolic biomarkers for wheat that can reliably predict FHB resistance or susceptibility, even as atmospheric CO2 levels rise.
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Affiliation(s)
| | - Martha M Vaughan
- 2 Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, USDA-ARS, Peoria, IL, U.S.A
| | - Karl Vermillion
- 2 Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, USDA-ARS, Peoria, IL, U.S.A
| | - Anu Surendra
- 1 National Research Council Canada, Ottawa, Canada; and
| | - Jennifer Teresi
- 2 Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, USDA-ARS, Peoria, IL, U.S.A
| | - Susan P McCormick
- 2 Mycotoxin Prevention and Applied Microbiology Research Unit, NCAUR, USDA-ARS, Peoria, IL, U.S.A
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Abstract
Nonnative pests often cause cascading ecological impacts, leading to detrimental socioeconomic consequences; however, how plant diversity may influence insect and disease invasions remains unclear. High species diversity in host communities may promote pest invasions by providing more niches (i.e., facilitation), but it can also diminish invasion success because low host dominance may make it more difficult for pests to establish (i.e., dilution). Most studies to date have focused on small-scale, experimental, or individual pest/disease species, while large-scale empirical studies, especially in natural ecosystems, are extremely rare. Using subcontinental-level data, we examined the role of tree diversity on pest invasion across the conterminous United States and found that the tree-pest diversity relationships are hump-shaped. Pest diversity increases with tree diversity at low tree diversity (because of facilitation or amplification) and is reduced at higher tree diversity (as a result of dilution). Thus, tree diversity likely regulates forest pest invasion through both facilitation and dilution that operate simultaneously, but their relative strengths vary with overall diversity. Our findings suggest the role of native species diversity in regulating nonnative pest invasions.
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77
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Carvajal MA, Alaniz AJ, Núñez-Hidalgo I, González-Césped C. Spatial global assessment of the pest Bagrada hilaris (Burmeister) (Heteroptera: Pentatomidae): current and future scenarios. PEST MANAGEMENT SCIENCE 2019; 75:809-820. [PMID: 30136427 DOI: 10.1002/ps.5183] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 07/27/2018] [Accepted: 08/16/2018] [Indexed: 05/26/2023]
Abstract
BACKGROUND The insect Bagrada hilaris (Burmeister) an important pest worldwide, mainly due to the serious economic losses incurred and the large number of zones invaded. However, current and future spatial distributions of this pest, and the total area of cropland potentially affected have not been estimated. Here, we aim to: (1) estimate the potential geographic distribution of B. hilaris; (2) quantify the total area of cropland potentially affected worldwide, and in two recently colonized zones (California and Chile); and (3) estimate future changes in distribution under different climate change scenarios. RESULTS We found that B. hilaris shows high environmental suitability in Mediterranean and arid regions, potentially affecting 1 108 184.1 km2 of cropland worldwide. The most affected continents were Asia and America, with 309 659.8 and 294 638.6 km2 of cropland at risk. More than 50% of cropland areas are at risk in seven countries. In California and central Chile, 43.7% and 50% of susceptible crops are at a high level of risk, respectively. Climate change scenarios predict an increase in the potential distribution of B. hilaris worldwide; America being the most affected continent. CONCLUSIONS Our results provide a spatially explicit baseline from which to focus efforts on the prevention, management and control of this pest worldwide. © 2018 Society of Chemical Industry.
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Affiliation(s)
- Mario A Carvajal
- Centro de Estudios en Ecología Espacial y Medio Ambiente - Ecogeografía, Miguel Claro 2550, Nuñoa, Santiago, Chile
| | - Alberto J Alaniz
- Centro de Estudios en Ecología Espacial y Medio Ambiente - Ecogeografía, Miguel Claro 2550, Nuñoa, Santiago, Chile
| | - Ignacio Núñez-Hidalgo
- Centro de Estudios en Ecología Espacial y Medio Ambiente - Ecogeografía, Miguel Claro 2550, Nuñoa, Santiago, Chile
- Laboratorio de Ecología Geográfica. Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Ñuñoa, Santiago, Chile
| | - Carlos González-Césped
- Centro de Estudios en Ecología Espacial y Medio Ambiente - Ecogeografía, Miguel Claro 2550, Nuñoa, Santiago, Chile
- Laboratorio de Entomología, Facultad de Ciencias Naturales y Exactas, Universidad de Playa Ancha, Valparaíso, Chile. Av. Sta. Rosa 11735, La Pintana, Santiago, Chile
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78
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Park CJ, Park JM. Endoplasmic Reticulum Plays a Critical Role in Integrating Signals Generated by Both Biotic and Abiotic Stress in Plants. FRONTIERS IN PLANT SCIENCE 2019; 10:399. [PMID: 31019523 PMCID: PMC6458287 DOI: 10.3389/fpls.2019.00399] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 03/15/2019] [Indexed: 05/19/2023]
Abstract
Most studies of environmental adaptations in plants have focused on either biotic or abiotic stress factors in an attempt to understand the defense mechanisms of plants against individual stresses. However, in the natural ecosystem, plants are simultaneously exposed to multiple stresses. Stress-tolerant crops developed in translational studies based on a single stress often fail to exhibit the expected traits in the field. To adapt to abiotic stress, recent studies have identified the need for interactions of plants with various microorganisms. These findings highlight the need to understand the multifaceted interactions of plants with biotic and abiotic stress factors. The endoplasmic reticulum (ER) is an organelle that links various stress responses. To gain insight into the molecular integration of biotic and abiotic stress responses in the ER, we focused on the interactions of plants with RNA viruses. This interaction points toward the relevance of ER in viral pathogenicity as well as plant responses. In this mini review, we explore the molecular crosstalk between biotic and abiotic stress signaling through the ER by elaborating ER-mediated signaling in response to RNA viruses and abiotic stresses. Additionally, we summarize the results of a recent study on phytohormones that induce ER-mediated stress response. These studies will facilitate the development of multi-stress-tolerant transgenic crops in the future.
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Affiliation(s)
- Chang-Jin Park
- Department of Bioresources Engineering, Sejong University, Seoul, South Korea
- Plant Engineering Research Institute, Sejong University, Seoul, South Korea
- *Correspondence: Chang-Jin Park,
| | - Jeong Mee Park
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea
- Department of Biosystems and Bioengineering, University of Science and Technology (UST), Daejeon, South Korea
- Jeong Mee Park,
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79
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Graphiola fimbriata: the first species of Graphiolaceae (Exobasidiales, Basidiomycota) described only based on its yeast stage. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1450-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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80
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Mastore M, Quadroni S, Toscano A, Mottadelli N, Brivio MF. Susceptibility to entomopathogens and modulation of basal immunity in two insect models at different temperatures. J Therm Biol 2018; 79:15-23. [PMID: 30612676 DOI: 10.1016/j.jtherbio.2018.11.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Revised: 10/31/2018] [Accepted: 11/12/2018] [Indexed: 11/30/2022]
Abstract
In this work, we analysed the efficacy of different commercial bio-insecticides (Steinernema feltiae, Steinernema carpocapsae, Heterorhabditis bacteriophora and Bacillus thuringiensis) by valuating the mortality induced on two insect models, Galleria mellonella (Lepidoptera) and Sarcophaga africa (Diptera) after exposure to different temperatures (10, 20 and 30 °C). Moreover, we investigated the effects of temperature on the basal humoral immunity of the two target insects; particularly, phenoloxidase (PO) and lysozyme activity. Our results show that G. mellonella is susceptible to all bio-insecticides at all the examined temperatures, except when infected at 10 °C with S. carpocapsae and at 30 °C with S. feltiae and B. thuringiensis. S. africa is more susceptible at 30 °C to all bioinsecticides; whereas, when infected at 10 and 20 °C, H. bacteriophora is the most efficient. Temperature modulates PO activity of both G. mellonella and S. africa, otherwise variations in lysozyme activity is observed only in G. mellonella. Except for a possible correlation between the increased lysozyme activity and the delayed Bt efficacy recorded on G. mellonella at 30 °C, a different resistance to bio-insecticides at different temperatures does not seem to be associated to variations of the host basal immunity, probably due to immunoevasive and immunodepressive strategies of these entomopathogens.
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Affiliation(s)
- Maristella Mastore
- Lab. of Comparative Immunology and Parasitology, Dept. of Theoretical and Applied Sciences, University of Insubria, Varese, Italy
| | - Silvia Quadroni
- Lab. of Ecology, Dept. of Science and High Technology, University of Insubria, Varese, Italy
| | - Andrea Toscano
- Lab. of Comparative Immunology and Parasitology, Dept. of Theoretical and Applied Sciences, University of Insubria, Varese, Italy
| | - Nicolò Mottadelli
- Lab. of Comparative Immunology and Parasitology, Dept. of Theoretical and Applied Sciences, University of Insubria, Varese, Italy
| | - Maurizio F Brivio
- Lab. of Comparative Immunology and Parasitology, Dept. of Theoretical and Applied Sciences, University of Insubria, Varese, Italy.
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81
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Monteiro F, Nishimura MT. Structural, Functional, and Genomic Diversity of Plant NLR Proteins: An Evolved Resource for Rational Engineering of Plant Immunity. ANNUAL REVIEW OF PHYTOPATHOLOGY 2018; 56:243-267. [PMID: 29949721 DOI: 10.1146/annurev-phyto-080417-045817] [Citation(s) in RCA: 119] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Plants employ a diverse intracellular system of NLR (nucleotide binding-leucine-rich repeat) innate immune receptors to detect pathogens of all types. These receptors represent valuable agronomic traits that plant breeders rely on to maximize yield in the face of devastating pathogens. Despite their importance, the mechanistic underpinnings of NLR-based disease resistance remain obscure. The rapidly increasing numbers of plant genomes are revealing a diverse array of NLR-type immune receptors. In parallel, mechanistic studies are describing diverse functions for NLR immune receptors. In this review, we intend to broadly describe how the structural, functional, and genomic diversity of plant immune receptors can provide a valuable resource for rational engineering of plant immunity.
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Affiliation(s)
- Freddy Monteiro
- Center for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA
| | - Marc T Nishimura
- Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870;
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82
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Climate Change, Carbon Dioxide, and Pest Biology, Managing the Future: Coffee as a Case Study. AGRONOMY-BASEL 2018. [DOI: 10.3390/agronomy8080152] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The challenge of maintaining sufficient food, feed, fiber, and forests, for a projected end of century population of between 9–10 billion in the context of a climate averaging 2–4 °C warmer, is a global imperative. However, climate change is likely to alter the geographic ranges and impacts for a variety of insect pests, plant pathogens, and weeds, and the consequences for managed systems, particularly agriculture, remain uncertain. That uncertainty is related, in part, to whether pest management practices (e.g., biological, chemical, cultural, etc.) can adapt to climate/CO2 induced changes in pest biology to minimize potential loss. The ongoing and projected changes in CO2, environment, managed plant systems, and pest interactions, necessitates an assessment of current management practices and, if warranted, development of viable alternative strategies to counter damage from invasive alien species and evolving native pest populations. We provide an overview of the interactions regarding pest biology and climate/CO2; assess these interactions currently using coffee as a case study; identify the potential vulnerabilities regarding future pest impacts; and discuss possible adaptive strategies, including early detection and rapid response via EDDMapS (Early Detection & Distribution Mapping System), and integrated pest management (IPM), as adaptive means to improve monitoring pest movements and minimizing biotic losses while improving the efficacy of pest control.
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83
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Jeger MJ, Madden LV, van den Bosch F. Plant Virus Epidemiology: Applications and Prospects for Mathematical Modeling and Analysis to Improve Understanding and Disease Control. PLANT DISEASE 2018; 102:837-854. [PMID: 30673389 DOI: 10.1094/pdis-04-17-0612-fe] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
In recent years, mathematical modeling has increasingly been used to complement experimental and observational studies of biological phenomena across different levels of organization. In this article, we consider the contribution of mathematical models developed using a wide range of techniques and uses to the study of plant virus disease epidemics. Our emphasis is on the extent to which models have contributed to answering biological questions and indeed raised questions related to the epidemiology and ecology of plant viruses and the diseases caused. In some cases, models have led to direct applications in disease control, but arguably their impact is better judged through their influence in guiding research direction and improving understanding across the characteristic spatiotemporal scales of plant virus epidemics. We restrict this article to plant virus diseases for reasons of length and to maintain focus even though we recognize that modeling has played a major and perhaps greater part in the epidemiology of other plant pathogen taxa, including vector-borne bacteria and phytoplasmas.
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Affiliation(s)
- M J Jeger
- Centre for Environmental Policy, Imperial College London, Silwood Park, Ascot SL5 7PY, United Kingdom
| | - L V Madden
- Department of Plant Pathology, Ohio State University, Wooster, OH 44691
| | - F van den Bosch
- Computational and Systems Biology, Rothamsted Research, Harpenden AL5 2JQ, United Kingdom
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84
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Figueroa CC, Fuentes-Contreras E, Molina-Montenegro MA, Ramírez CC. Biological and genetic features of introduced aphid populations in agroecosystems. CURRENT OPINION IN INSECT SCIENCE 2018; 26:63-68. [PMID: 29764662 DOI: 10.1016/j.cois.2018.01.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Revised: 01/12/2018] [Accepted: 01/16/2018] [Indexed: 06/08/2023]
Abstract
In agroecosystems, introduced aphids that reproduce by obligate parthenogenesis (OP) show strong biased representation of a few genotypes (superclones), whereas species with cyclical parthenogenesis (CP) exhibit the opposite trend with many unique genotypes. We analyzed the biological and genetic features of 23 different aphid species introduced in different geographic areas and climates, finding putative superclones in about 60% of them. We have examined the proximal causes for aphid establishment and spread after their introduction, and found that OP, host availability, and phenotypic plasticity are among the main variables underpinning the ability of aphids to succeed in new geographic areas, which may explain the high potential for invasion in this group of pest insects.
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Affiliation(s)
- Christian C Figueroa
- Instituto de Ciencias Biológicas, Universidad de Talca, Chile; Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, 1 Poniente 1141, Talca, Chile.
| | - Eduardo Fuentes-Contreras
- Facultad de Ciencias Agrarias, Universidad de Talca, Chile; Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, 1 Poniente 1141, Talca, Chile
| | - Marco A Molina-Montenegro
- Instituto de Ciencias Biológicas, Universidad de Talca, Chile; Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, 1 Poniente 1141, Talca, Chile
| | - Claudio C Ramírez
- Instituto de Ciencias Biológicas, Universidad de Talca, Chile; Centre for Molecular and Functional Ecology in Agroecosystems, Universidad de Talca, 1 Poniente 1141, Talca, Chile
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85
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Silva G, Oyekanmi J, Nkere CK, Bömer M, Kumar PL, Seal SE. Rapid detection of potyviruses from crude plant extracts. Anal Biochem 2018; 546:17-22. [PMID: 29378167 PMCID: PMC5873530 DOI: 10.1016/j.ab.2018.01.019] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Revised: 01/18/2018] [Accepted: 01/21/2018] [Indexed: 11/16/2022]
Abstract
Potyviruses (genus Potyvirus; family Potyviridae) are widely distributed and represent one of the most economically important genera of plant viruses. Therefore, their accurate detection is a key factor in developing efficient control strategies. However, this can sometimes be problematic particularly in plant species containing high amounts of polysaccharides and polyphenols such as yam (Dioscorea spp.). Here, we report the development of a reliable, rapid and cost-effective detection method for the two most important potyviruses infecting yam based on reverse transcription-recombinase polymerase amplification (RT-RPA). The developed method, named 'Direct RT-RPA', detects each target virus directly from plant leaf extracts prepared with a simple and inexpensive extraction method avoiding laborious extraction of high-quality RNA. Direct RT-RPA enables the detection of virus-positive samples in under 30 min at a single low operation temperature (37 °C) without the need for any expensive instrumentation. The Direct RT-RPA tests constitute robust, accurate, sensitive and quick methods for detection of potyviruses from recalcitrant plant species. The minimal sample preparation requirements and the possibility of storing RPA reagents without cold chain storage, allow Direct RT-RPA to be adopted in minimally equipped laboratories and with potential use in plant clinic laboratories and seed certification facilities worldwide.
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Affiliation(s)
- Gonçalo Silva
- Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent, ME4 4TB, UK.
| | - Joshua Oyekanmi
- International Institute of Tropical Agriculture (IITA), Oyo Road, PMB 5320, Ibadan, Nigeria
| | - Chukwuemeka K Nkere
- International Institute of Tropical Agriculture (IITA), Oyo Road, PMB 5320, Ibadan, Nigeria; National Root Crops Research Institute, Km 8 Ikot Ekpene Road, PMB 7006, Umudike, Nigeria
| | - Moritz Bömer
- Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent, ME4 4TB, UK
| | - P Lava Kumar
- International Institute of Tropical Agriculture (IITA), Oyo Road, PMB 5320, Ibadan, Nigeria
| | - Susan E Seal
- Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent, ME4 4TB, UK
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86
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Destoumieux-Garzón D, Mavingui P, Boetsch G, Boissier J, Darriet F, Duboz P, Fritsch C, Giraudoux P, Le Roux F, Morand S, Paillard C, Pontier D, Sueur C, Voituron Y. The One Health Concept: 10 Years Old and a Long Road Ahead. Front Vet Sci 2018; 5:14. [PMID: 29484301 PMCID: PMC5816263 DOI: 10.3389/fvets.2018.00014] [Citation(s) in RCA: 304] [Impact Index Per Article: 43.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2017] [Accepted: 01/22/2018] [Indexed: 02/05/2023] Open
Abstract
Over the past decade, a significant increase in the circulation of infectious agents was observed. With the spread and emergence of epizootics, zoonoses, and epidemics, the risks of pandemics became more and more critical. Human and animal health has also been threatened by antimicrobial resistance, environmental pollution, and the development of multifactorial and chronic diseases. This highlighted the increasing globalization of health risks and the importance of the human-animal-ecosystem interface in the evolution and emergence of pathogens. A better knowledge of causes and consequences of certain human activities, lifestyles, and behaviors in ecosystems is crucial for a rigorous interpretation of disease dynamics and to drive public policies. As a global good, health security must be understood on a global scale and from a global and crosscutting perspective, integrating human health, animal health, plant health, ecosystems health, and biodiversity. In this study, we discuss how crucial it is to consider ecological, evolutionary, and environmental sciences in understanding the emergence and re-emergence of infectious diseases and in facing the challenges of antimicrobial resistance. We also discuss the application of the "One Health" concept to non-communicable chronic diseases linked to exposure to multiple stresses, including toxic stress, and new lifestyles. Finally, we draw up a list of barriers that need removing and the ambitions that we must nurture for the effective application of the "One Health" concept. We conclude that the success of this One Health concept now requires breaking down the interdisciplinary barriers that still separate human and veterinary medicine from ecological, evolutionary, and environmental sciences. The development of integrative approaches should be promoted by linking the study of factors underlying stress responses to their consequences on ecosystem functioning and evolution. This knowledge is required for the development of novel control strategies inspired by environmental mechanisms leading to desired equilibrium and dynamics in healthy ecosystems and must provide in the near future a framework for more integrated operational initiatives.
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Affiliation(s)
- Delphine Destoumieux-Garzón
- CNRS, Interactions Hôtes-Pathogènes-Environnements (IHPE), UMR5244, Université de Perpignan Via Domitia, Université de Montpellier, Ifremer, Montpellier, France
| | - Patrick Mavingui
- Université de La Reunion, UMR PIMIT (Processus Infectieux en Milieu Insulaire Tropical), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
- UMR Ecologie Microbienne, CNRS, INRA, VetAgro Sup, Claude Bernard University Lyon 1, Université de Lyon, Villeurbanne, France
| | - Gilles Boetsch
- UMI 3189 “Environnement, Santé, Sociétés”, Faculty of Medicine, Cheikh Anta Diop University, Dakar-Fann, Senegal
- Téssékéré International Human-Environment Observatory Labex DRIIM, CNRS and Cheikh Anta Diop University, Dakar, Senegal
| | - Jérôme Boissier
- Université de Perpignan Via Domitia, Interactions Hôtes-Pathogènes-Environnements (IHPE), UMR5244, CNRS, Ifremer, Université de Montpellier, Perpignan, France
| | - Frédéric Darriet
- Institut de Recherche pour le Développement, Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle (MIVEGEC), IRD, CNRS, Université de Montpellier, Montpellier, France
| | - Priscilla Duboz
- UMI 3189 “Environnement, Santé, Sociétés”, Faculty of Medicine, Cheikh Anta Diop University, Dakar-Fann, Senegal
- Téssékéré International Human-Environment Observatory Labex DRIIM, CNRS and Cheikh Anta Diop University, Dakar, Senegal
| | - Clémentine Fritsch
- Laboratoire Chrono-Environnement, UMR 6249 CNRS/Université Bourgogne Franche-Comté Usc, INRA, Besançon, France
| | - Patrick Giraudoux
- Laboratoire Chrono-Environnement, UMR 6249 CNRS/Université Bourgogne Franche-Comté Usc, INRA, Besançon, France
- Institut Universitaire de France, Paris, France
| | - Frédérique Le Roux
- Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, Plouzané, France
| | - Serge Morand
- Institut des Sciences de l’Évolution (ISEM), UMR 5554, CNRS, Université de Montpellier, CIRAD, IRD, EPHE, Montpellier, France
- UPR ASTRE, CIRAD, Montpellier, France
| | - Christine Paillard
- Laboratoire des Sciences de l’Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, UMR 6539, CNRS, UBO, IRD, Ifremer, Plouzané, France
| | - Dominique Pontier
- Laboratoire de Biométrie et Biologie Evolutive UMR5558, CNRS, Université de Lyon, Université Claude Bernard Lyon 1, Villeurbanne, France
- LabEx Ecofect, Eco-Evolutionary Dynamics of Infectious Diseases, University of Lyon, Lyon, France
| | - Cédric Sueur
- Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France
| | - Yann Voituron
- Laboratoire d’Ecologie des Hydrosystèmes Naturels et Anthropisés, UMR 5023, CNRS, Université Claude Bernard Lyon1, Université de Lyon, Villeurbanne, France
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87
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Eigenbrode SD, Binns WP, Huggins DR. Confronting Climate Change Challenges to Dryland Cereal Production: A Call for Collaborative, Transdisciplinary Research, and Producer Engagement. Front Ecol Evol 2018. [DOI: 10.3389/fevo.2017.00164] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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88
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Gibbs M, Weir L. Sub-lethal viral exposure and growth on drought stressed host plants changes resource allocation patterns and life history costs in the Speckled Wood butterfly, Pararge aegeria. J Invertebr Pathol 2017; 150:106-113. [PMID: 28988030 DOI: 10.1016/j.jip.2017.10.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Revised: 09/29/2017] [Accepted: 10/03/2017] [Indexed: 11/16/2022]
Abstract
This study investigated the interactive effects of growth on drought stressed host plants and pathogen challenge with the baculovirus Autographa californica nucleopolyhedrovirus (AcMNPV) on survival and fitness-related traits using the Speckled Wood butterfly, Pararge aegeria (L.). Exposure to AcMNPV significantly reduced survival to pupation. For surviving larvae, sub-lethal infection significantly decreased daily mass acquisition rates and pupal mass. Growth on drought stressed plants increased daily mass acquisition rates resulting in heavier pupae, and increased resource allocation to adult reproduction. The interaction between host plant drought and viral exposure resulted in different resource allocation strategies, and thus different growth trajectories, between larvae. This in turn resulted in significantly different allometric relationships between larval mass (at inoculation) and both development time and investment in flight muscles. For larvae with relatively lighter masses there was a cost of resisting infection when growth occurred on drought stressed host plants, both within the larval stage (i.e. longer larval development times) and in the adult stage (i.e. lower investment in flight muscle mass). This multi-factor study highlights several potential mechanisms by which the complex interplay between low host plant nutritional quality due to drought, and pathogen exposure, may differentially influence the performance of P. aegeria individuals across multiple life stages.
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Affiliation(s)
- Melanie Gibbs
- NERC Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxon, OX10 8BB, UK.
| | - Laura Weir
- NERC Centre for Ecology & Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxon, OX10 8BB, UK
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89
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Kashyap PL, Rai P, Srivastava AK, Kumar S. Trichoderma for climate resilient agriculture. World J Microbiol Biotechnol 2017; 33:155. [PMID: 28695465 DOI: 10.1007/s11274-017-2319-1] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Accepted: 07/05/2017] [Indexed: 01/16/2023]
Abstract
Climate change is one of the biggest challenges of the twenty-first century for sustainable agricultural production. Several reports highlighted the need for better agricultural practices and use of eco-friendly methods for sustainable crop production under such situations. In this context, Trichoderma species could be a model fungus to sustain crop productivity. Currently, these are widely used as inoculants for biocontrol, biofertilization, and phytostimulation. They are reported to improve photosynthetic efficiency, enhance nutrient uptake and increase nitrogen use efficiency in crops. Moreover, they can be used to produce bio-energy, facilitate plants for adaptation and mitigate adverse effect of climate change. The technological advancement in high throughput DNA sequencing and biotechnology provided deep insight into the complex and diverse biotic interactions established in nature by Trichoderma spp. and efforts are being made to translate this knowledge to enhance crop growth, resistance to disease and tolerance to abiotic stresses under field conditions. The discovery of several traits and genes that are involved in the beneficial effects of Trichoderma spp. has resulted in better understanding of the performance of bioinoculants in the field, and will lead to more efficient use of these strains and possibly to their improvement by genetic modification. The present mini-review is an effort to elucidate the molecular basis of plant growth promotion and defence activation by Trichoderma spp. to garner broad perspectives regarding their functioning and applicability for climate resilient agriculture.
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Affiliation(s)
- Prem Lal Kashyap
- ICAR-Indian Institute of Wheat and Barley Research (IIWBR), Karnal, 132001, India. .,ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, 275103, India.
| | - Pallavi Rai
- ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, 275103, India
| | - Alok Kumar Srivastava
- ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, 275103, India
| | - Sudheer Kumar
- ICAR-Indian Institute of Wheat and Barley Research (IIWBR), Karnal, 132001, India
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90
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Impact of climate and host availability on future distribution of Colorado potato beetle. Sci Rep 2017; 7:4489. [PMID: 28674384 PMCID: PMC5495769 DOI: 10.1038/s41598-017-04607-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Accepted: 05/17/2017] [Indexed: 11/09/2022] Open
Abstract
Colorado Potato Beetle (CPB) is a devastating invasive pest of potato both in its native North America and now across Eurasia. It also damages eggplant, tomato and feeds on several wild species in the Solanaceae, such as S. eleagnifolium and S. rostratum Dunal (SR). Since first categorized as a pest in 1864, CPB has spread rapidly across North America, Europe and Asia. In light of its invasiveness and economic importance, it is necessary to study how climate change and host availability may alter the distribution of the CPB. Maximum Entropy (MaxEnt) models were used to anticipate global range expansion as influenced by environmental conditions, and by the possibility of cooperative invasion of CPB and its wild host SR. The results indicate that both CPB and SR can occupy warm areas of North America, South Africa, Europe, China, and Australia. Future climate conditions may promote CPB expansion into northern regions and SR into the circumpolar latitudes. The existing range and continued spread of SR may also assist the global expansion of CPB. Future management of this pest should consider the impacts of global climate change and host availability on its potential global distribution.
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91
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Abstract
Emerging pathogens of crops threaten food security and are increasingly problematic due to intensive agriculture and high volumes of trade and transport in plants and plant products. The ability to predict pathogen risk to agricultural regions would therefore be valuable. However, predictions are complicated by multi-faceted relationships between crops, their pathogens, and climate change. Climate change is related to industrialization, which has brought not only a rise in greenhouse gas emissions but also an increase in other atmospheric pollutants. Here, we consider the implications of rising levels of reactive nitrogen gases and their manifold interactions with crops and crop diseases.
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Affiliation(s)
- Helen N Fones
- Biosciences, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK.
| | - Sarah J Gurr
- Biosciences, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK
- Rothamsted Research, North Wyke, Okehampton, EX20 2SB, UK
- Donder's Hon Chair, University of Utrecht, Padualaan 8, 3584 CH, Utrecht, The Netherlands
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92
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Peyraud R, Dubiella U, Barbacci A, Genin S, Raffaele S, Roby D. Advances on plant-pathogen interactions from molecular toward systems biology perspectives. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 90:720-737. [PMID: 27870294 PMCID: PMC5516170 DOI: 10.1111/tpj.13429] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 11/14/2016] [Accepted: 11/14/2016] [Indexed: 05/21/2023]
Abstract
In the past 2 decades, progress in molecular analyses of the plant immune system has revealed key elements of a complex response network. Current paradigms depict the interaction of pathogen-secreted molecules with host target molecules leading to the activation of multiple plant response pathways. Further research will be required to fully understand how these responses are integrated in space and time, and exploit this knowledge in agriculture. In this review, we highlight systems biology as a promising approach to reveal properties of molecular plant-pathogen interactions and predict the outcome of such interactions. We first illustrate a few key concepts in plant immunity with a network and systems biology perspective. Next, we present some basic principles of systems biology and show how they allow integrating multiomics data and predict cell phenotypes. We identify challenges for systems biology of plant-pathogen interactions, including the reconstruction of multiscale mechanistic models and the connection of host and pathogen models. Finally, we outline studies on resistance durability through the robustness of immune system networks, the identification of trade-offs between immunity and growth and in silico plant-pathogen co-evolution as exciting perspectives in the field. We conclude that the development of sophisticated models of plant diseases incorporating plant, pathogen and climate properties represent a major challenge for agriculture in the future.
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Affiliation(s)
- Rémi Peyraud
- LIPMUniversité de ToulouseINRACNRSCastanet‐TolosanFrance
| | | | | | - Stéphane Genin
- LIPMUniversité de ToulouseINRACNRSCastanet‐TolosanFrance
| | | | - Dominique Roby
- LIPMUniversité de ToulouseINRACNRSCastanet‐TolosanFrance
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93
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Epidemiological History of Cypress Canker Disease in Source and Invasion Sites. FORESTS 2017. [DOI: 10.3390/f8040121] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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94
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Robin C, Andanson A, Saint-Jean G, Fabreguettes O, Dutech C. What was old is new again: thermal adaptation within clonal lineages during range expansion in a fungal pathogen. Mol Ecol 2017; 26:1952-1963. [PMID: 28141894 DOI: 10.1111/mec.14039] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2016] [Revised: 12/27/2016] [Accepted: 01/17/2017] [Indexed: 12/25/2022]
Abstract
Range-expanding species are expected to gain an increasing importance in the context of global change. They provide a great opportunity to study contemporary evolutionary changes and to unravel the mechanisms of evolution. Cryphonectria parasitica, the causal agent of chestnut blight, originating from Asia, has been spread since the beginning of the 20th century into different continents. We took advantage of the C. parasitica recent emergence in northern France to study the changes in population genetic structure and in phenotypic traits along this colonization and climatic gradient. Four hundred twenty-seven C. parasitica isolates were sampled in 47 chestnut sites in northern France. The C. parasitica outbreak in the north was found to be due to the expansion of five dominant clonal groups from southern France and to the emergence of a few rare recombined genotypes. The evolutionary changes during C. parasitica range expansion were studied by analysing phenotypic changes in isolates from the same clonal lineage, with or without a geographic shift. Growth rates were assessed in vitro, at four temperatures. The northern isolates grew faster at 12 and 15 °C and more slowly at 28 and 32 °C than the southern isolates. These results strongly suggest local adaptation to low temperatures in C. parasitica, with a trade-off of slower growth at high temperatures. They also reflect the high evolutionary potential of C. parasitica along a colonization gradient and show that clonal evolution is not a limitation for the rapid thermal adaptation of this invasive fungal species.
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Affiliation(s)
- Cécile Robin
- BIOGECO, INRA, University of Bordeaux, 69 route d'Arcachon, 33610, Cestas, France
| | - Audrey Andanson
- BIOGECO, INRA, University of Bordeaux, 69 route d'Arcachon, 33610, Cestas, France
| | - Gilles Saint-Jean
- BIOGECO, INRA, University of Bordeaux, 69 route d'Arcachon, 33610, Cestas, France
| | - Olivier Fabreguettes
- BIOGECO, INRA, University of Bordeaux, 69 route d'Arcachon, 33610, Cestas, France
| | - Cyril Dutech
- BIOGECO, INRA, University of Bordeaux, 69 route d'Arcachon, 33610, Cestas, France
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95
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Abstract
Fungal plant pathogens are ubiquitous and highly diverse. Key to their success is high host density, which notably is the case in agroecosystems. Several hypotheses related to the effects of plant pathogens on plant diversity (the Janzen-Connell hypothesis, the dilution effect hypothesis) and the phenomenon of higher biomass in plant mixtures (i.e., overyielding) can all be explained by the quantitative interplay between host and pathogen density. In many agroecosystems, fungal plant pathogens cause great losses, since in monocultures diseased plants cannot be replaced by healthy plants. On the other hand, in natural ecosystems fungal plant pathogens shape the succession of vegetation and enhance the biodiversity of forests and grasslands. When pathogens are introduced into areas outside their natural range, they may behave differently, causing severe damage. Once introduced, changes may occur such as hybridization with other closely related pathogens or host shifts, host jumps, or horizontal gene transfer. Such changes can be hazardous for both agricultural and natural ecosystems.
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96
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Myers SS, Smith MR, Guth S, Golden CD, Vaitla B, Mueller ND, Dangour AD, Huybers P. Climate Change and Global Food Systems: Potential Impacts on Food Security and Undernutrition. Annu Rev Public Health 2017; 38:259-277. [PMID: 28125383 DOI: 10.1146/annurev-publhealth-031816-044356] [Citation(s) in RCA: 274] [Impact Index Per Article: 34.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Great progress has been made in addressing global undernutrition over the past several decades, in part because of large increases in food production from agricultural expansion and intensification. Food systems, however, face continued increases in demand and growing environmental pressures. Most prominently, human-caused climate change will influence the quality and quantity of food we produce and our ability to distribute it equitably. Our capacity to ensure food security and nutritional adequacy in the face of rapidly changing biophysical conditions will be a major determinant of the next century's global burden of disease. In this article, we review the main pathways by which climate change may affect our food production systems-agriculture, fisheries, and livestock-as well as the socioeconomic forces that may influence equitable distribution.
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Affiliation(s)
- Samuel S Myers
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts 02115; , , , .,Harvard University Center for the Environment, Cambridge, Massachusetts 02138;
| | - Matthew R Smith
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts 02115; , , ,
| | - Sarah Guth
- Harvard University Center for the Environment, Cambridge, Massachusetts 02138;
| | - Christopher D Golden
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts 02115; , , , .,Harvard University Center for the Environment, Cambridge, Massachusetts 02138;
| | - Bapu Vaitla
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts 02115; , , ,
| | - Nathaniel D Mueller
- Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138; , .,Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138
| | - Alan D Dangour
- Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London WC1E 7HT, United Kingdom;
| | - Peter Huybers
- Harvard University Center for the Environment, Cambridge, Massachusetts 02138; .,Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138; ,
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97
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Syfert MM, Serbina L, Burckhardt D, Knapp S, Percy DM. Emerging New Crop Pests: Ecological Modelling and Analysis of the South American Potato Psyllid Russelliana solanicola (Hemiptera: Psylloidea) and Its Wild Relatives. PLoS One 2017; 12:e0167764. [PMID: 28052088 PMCID: PMC5214844 DOI: 10.1371/journal.pone.0167764] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Accepted: 11/18/2016] [Indexed: 11/22/2022] Open
Abstract
Food security is threatened by newly emerging pests with increased invasive potential accelerated through globalization. The Neotropical jumping plant louse Russelliana solanicola Tuthill is currently a localized potato pest and probable vector of plant pathogens. It is an unusually polyphagous species and is widely distributed in and along the Andes. To date, introductions have been detected in eastern Argentina, southern Brazil and Uruguay. Species distribution models (SDMs) and trait comparisons based on contemporary and historical collections are used to estimate the potential spread of R. solanicola worldwide. We also extend our analyses to all described species in the genus Russelliana in order to assess the value of looking beyond pest species to predict pest spread. We investigate the extent to which data on geographical range and environmental niche can be effectively extracted from museum collections for comparative analyses of pest and non-pest species in Russelliana. Our results indicate that R. solanicola has potential for invasion in many parts of the world with suitable environmental conditions that currently have or are anticipated to increase potato cultivation. Large geographical ranges are characteristic of a morphological subgeneric taxon group that includes R. solanicola; this same group also has a larger environmental breadth than other groups within the genus. Ecological modelling using museum collections provides a useful tool for identifying emerging pests and developing integrated pest management programs.
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Affiliation(s)
- Mindy M. Syfert
- Natural History Museum, Department of Life Sciences, London, United Kingdom
| | - Liliya Serbina
- Naturhistorisches Museum, Basel, Switzerland
- Institut für Natur-, Landschafts- und Umweltschutz der Universität Basel, Basel, Switzerland
| | | | - Sandra Knapp
- Natural History Museum, Department of Life Sciences, London, United Kingdom
| | - Diana M. Percy
- Natural History Museum, Department of Life Sciences, London, United Kingdom
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada
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98
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Bebber DP, Castillo ÁD, Gurr SJ. Modelling coffee leaf rust risk in Colombia with climate reanalysis data. Philos Trans R Soc Lond B Biol Sci 2016; 371:20150458. [PMID: 28080984 PMCID: PMC5095537 DOI: 10.1098/rstb.2015.0458] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/12/2016] [Indexed: 11/24/2022] Open
Abstract
Many fungal plant diseases are strongly controlled by weather, and global climate change is thus likely to have affected fungal pathogen distributions and impacts. Modelling the response of plant diseases to climate change is hampered by the difficulty of estimating pathogen-relevant microclimatic variables from standard meteorological data. The availability of increasingly sophisticated high-resolution climate reanalyses may help overcome this challenge. We illustrate the use of climate reanalyses by testing the hypothesis that climate change increased the likelihood of the 2008-2011 outbreak of Coffee Leaf Rust (CLR, Hemileia vastatrix) in Colombia. We develop a model of germination and infection risk, and drive this model using estimates of leaf wetness duration and canopy temperature from the Japanese 55-Year Reanalysis (JRA-55). We model germination and infection as Weibull functions with different temperature optima, based upon existing experimental data. We find no evidence for an overall trend in disease risk in coffee-growing regions of Colombia from 1990 to 2015, therefore, we reject the climate change hypothesis. There was a significant elevation in predicted CLR infection risk from 2008 to 2011 compared with other years. JRA-55 data suggest a decrease in canopy surface water after 2008, which may have helped terminate the outbreak. The spatial resolution and accuracy of climate reanalyses are continually improving, increasing their utility for biological modelling. Confronting disease models with data requires not only accurate climate data, but also disease observations at high spatio-temporal resolution. Investment in monitoring, storage and accessibility of plant disease observation data are needed to match the quality of the climate data now available.This article is part of the themed issue 'Tackling emerging fungal threats to animal health, food security and ecosystem resilience'.
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Affiliation(s)
- Daniel P Bebber
- Department of Biosciences, University of Exeter, Stocker Road, Exeter EX4 4QD, UK
| | | | - Sarah J Gurr
- Department of Biosciences, University of Exeter, Stocker Road, Exeter EX4 4QD, UK
- Rothamsted Research, North Wyke, Okehampton EX20 2SB, UK
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99
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Vaughan M, Backhouse D, Ponte ED. Climate change impacts on the ecology of Fusarium graminearum species complex and susceptibility of wheat to Fusarium head blight: a review. WORLD MYCOTOXIN J 2016. [DOI: 10.3920/wmj2016.2053] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Fusarium head blight (FHB) of wheat, caused mainly by a few members of the Fusarium graminearum species complex (FGSC), is a major threat to agricultural grain production, food safety, and animal health. The severity of disease epidemics and accumulation of associated trichothecene mycotoxins in wheat kernels is strongly driven by meteorological factors. The potential impacts of change in climate are reviewed from the perspective of the FGSC life cycle and host resistance mechanisms influenced by abiotic pressures at the ecological, physiological and molecular level. Alterations in climate patterns and cropping systems may affect the distribution, composition and load of FGSC inoculum, but quantitative information is lacking regarding the differential responses among FGSC members. In general, the coincidence of wet and warm environment during flowering enhances the risk of FHB epidemics, but the magnitude and direction of the change in FHB and mycotoxin risk will be a consequence of a multitude of effects on key processes affecting inoculum dynamics and host susceptibility. Rates of residue decomposition, inoculum production and dispersal may be significantly altered by changes in crop rotations, atmospheric carbon dioxide concentration ([CO2]), temperature and precipitation patterns, but the impact may be much greater for regions where inoculum is more limited, such as temperate climates. In regions of non-limiting inoculum, climate change effects will likely be greater on the pathogenic rather than on the saprophytic phase. Although the mechanisms by which abiotic stress influences wheat defences against Fusarium species are unknown, available data would suggest that wheat may be more susceptible to Fusarium infection under future climate conditions. Additional research in this area should be a priority so that breeding efforts and climate resilient management strategies can be developed.
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Affiliation(s)
- M. Vaughan
- United States Department of Agriculture, Agricultural Research Service, Mycotoxin Prevention and Applied Microbiology Unit, National Center for Agricultural Utilization Research, 1815 North University Street, Peoria, IL 61604, USA
| | - D. Backhouse
- School of Environmental and Rural Science, University of New England, Armidale NSW 2351, Australia
| | - E.M. Del Ponte
- Departamento de Fitopatologia, Campus Universitário s/n, Universidade Federal de Viçosa, 36570-000, Viçosa, MG, Brazil
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100
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Pathway models for analysing and managing the introduction of alien plant pestsan overview and categorization. Ecol Modell 2016. [DOI: 10.1016/j.ecolmodel.2016.08.009] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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