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Alves FRR, Lira BS, Pikart FC, Monteiro SS, Furlan CM, Purgatto E, Pascoal GB, Andrade SCDS, Demarco D, Rossi M, Freschi L. Beyond the limits of photoperception: constitutively active PHYTOCHROME B2 overexpression as a means of improving fruit nutritional quality in tomato. PLANT BIOTECHNOLOGY JOURNAL 2020; 18:2027-2041. [PMID: 32068963 PMCID: PMC7540714 DOI: 10.1111/pbi.13362] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2019] [Revised: 01/28/2020] [Accepted: 02/10/2020] [Indexed: 05/30/2023]
Abstract
Photoreceptor engineering has recently emerged as a means for improving agronomically beneficial traits in crop species. Despite the central role played by the red/far-red photoreceptor phytochromes (PHYs) in controlling fruit physiology, the applicability of PHY engineering for increasing fleshy fruit nutritional content remains poorly exploited. In this study, we demonstrated that the fruit-specific overexpression of a constitutively active GAF domain Tyr252 -to-His PHYB2 mutant version (PHYB2Y252H ) significantly enhances the accumulation of multiple health-promoting antioxidants in tomato fruits, without negative collateral consequences on vegetative development. Compared with the native PHYB2 overexpression, PHYB2Y252H -overexpressing lines exhibited more extensive increments in transcript abundance of genes associated with fruit plastid development, chlorophyll biosynthesis and metabolic pathways responsible for the accumulation of antioxidant compounds. Accordingly, PHYB2Y252H -overexpressing fruits developed more chloroplasts containing voluminous grana at the green stage and overaccumulated carotenoids, tocopherols, flavonoids and ascorbate in ripe fruits compared with both wild-type and PHYB2-overexpressing lines. The impacts of PHYB2 or PHYB2Y252H overexpression on fruit primary metabolism were limited to a slight promotion in lipid biosynthesis and reduction in sugar accumulation. Altogether, these findings indicate that mutation-based adjustments in PHY properties represent a valuable photobiotechnological tool for tomato biofortification, highlighting the potential of photoreceptor engineering for improving quality traits in fleshy fruits.
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Affiliation(s)
- Frederico Rocha Rodrigues Alves
- Departamento de BotânicaUniversidade de São PauloSão PauloSPBrazil
- Departamento de BotânicaUniversidade Federal de GoiásGoiásGOBrazil
| | | | | | | | | | - Eduardo Purgatto
- Departamento de Alimentos e Nutrição ExperimentalUniversidade de São PauloSão PauloSPBrazil
| | - Grazieli Benedetti Pascoal
- Departamento de Alimentos e Nutrição ExperimentalUniversidade de São PauloSão PauloSPBrazil
- Curso de Graduação em NutriçãoUniversidade Federal de UberlândiaMinas GeraisMGBrazil
| | | | - Diego Demarco
- Departamento de BotânicaUniversidade de São PauloSão PauloSPBrazil
| | - Magdalena Rossi
- Departamento de BotânicaUniversidade de São PauloSão PauloSPBrazil
| | - Luciano Freschi
- Departamento de BotânicaUniversidade de São PauloSão PauloSPBrazil
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Abstract
Fruit set is the process whereby ovaries develop into fruits after pollination and fertilization. The process is induced by the phytohormone gibberellin (GA) in tomatoes, as determined by the constitutive GA response mutant procera However, the role of GA on the metabolic behavior in fruit-setting ovaries remains largely unknown. This study explored the biochemical mechanisms of fruit set using a network analysis of integrated transcriptome, proteome, metabolome, and enzyme activity data. Our results revealed that fruit set involves the activation of central carbon metabolism, with increased hexoses, hexose phosphates, and downstream metabolites, including intermediates and derivatives of glycolysis, the tricarboxylic acid cycle, and associated organic and amino acids. The network analysis also identified the transcriptional hub gene SlHB15A, that coordinated metabolic activation. Furthermore, a kinetic model of sucrose metabolism predicted that the sucrose cycle had high activity levels in unpollinated ovaries, whereas it was shut down when sugars rapidly accumulated in vacuoles in fruit-setting ovaries, in a time-dependent manner via tonoplastic sugar carriers. Moreover, fruit set at least partly required the activity of fructokinase, which may pull fructose out of the vacuole, and this could feed the downstream pathways. Collectively, our results indicate that GA cascades enhance sink capacities, by up-regulating central metabolic enzyme capacities at both transcriptional and posttranscriptional levels. This leads to increased sucrose uptake and carbon fluxes for the production of the constituents of biomass and energy that are essential for rapid ovary growth during the initiation of fruit set.
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Çolak NG, Eken NT, Ülger M, Frary A, Doğanlar S. Exploring wild alleles from Solanum pimpinellifolium with the potential to improve tomato flavor compounds. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 298:110567. [PMID: 32771168 DOI: 10.1016/j.plantsci.2020.110567] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Revised: 06/09/2020] [Accepted: 06/13/2020] [Indexed: 06/11/2023]
Abstract
Most consumers complain about the flavor of current tomato cultivars and many pay a premium for alternatives such as heirloom varieties. Breeding for fruit flavor is difficult because it is a quantitatively inherited trait influenced by taste, aroma and environmental factors. A lack of genetic diversity in modern tomato cultivars also necessitates exploration of new sources for flavor alleles. Wild tomato S. pimpinellifolium and inbred backcross lines were assessed for individual sugars and organic acids which are two of the main components of tomato flavor. S. pimpinellifolium was found to harbor alleles that could be used to increase glucose and fructose content and adjust acidity by altering malic and citric acid levels. Single nucleotide polymorphism markers were used to detect 14 quantitative trait loci (QTLs) for sugars and 71 for organic acids. Confirmation was provided by comparing map locations with previously identified loci. Thus, seven (50 %) of the sugar QTLs and 22 (31 %) of the organic acids loci were supported by analyses in other tomato populations. Examination of the genomic sequence containing the QTLs allowed identification of potential candidate genes for several flavor components.
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Affiliation(s)
- Nergiz Gürbüz Çolak
- Department of Molecular Biology and Genetics, Faculty of Science, Izmir Institute of Technology, İzmir 35433, Turkey.
| | - Neslihan Tek Eken
- Department of Molecular Biology and Genetics, Faculty of Science, Izmir Institute of Technology, İzmir 35433, Turkey.
| | | | - Anne Frary
- Department of Molecular Biology and Genetics, Faculty of Science, Izmir Institute of Technology, İzmir 35433, Turkey.
| | - Sami Doğanlar
- Department of Molecular Biology and Genetics, Faculty of Science, Izmir Institute of Technology, İzmir 35433, Turkey.
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Singh P, Kalunke RM, Shukla A, Tzfadia O, Thulasiram HV, Giri AP. Biosynthesis and tissue-specific partitioning of camphor and eugenol in Ocimum kilimandscharicum. PHYTOCHEMISTRY 2020; 177:112451. [PMID: 32619737 DOI: 10.1016/j.phytochem.2020.112451] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 06/13/2020] [Accepted: 06/14/2020] [Indexed: 05/12/2023]
Abstract
In Ocimum kilimandscharicum, the relative volatile composition of camphor in leaves was as high as 55%, while that of eugenol in roots was 57%. These metabolites were differentially partitioned between the aerial and root tissues. Global metabolomics revealed tissue-specific biochemical specialization, evident by the differential distribution of 2588 putative metabolites across nine tissues. Next-generation sequencing analysis indicated differential expression of 51 phenylpropanoid and 55 terpenoid pathway genes in aerial and root tissues. By integrating metabolomics with transcriptomics, the camphor biosynthesis pathway in O. kilimandscharicum was elucidated. In planta bioassays revealed the role of geranyl diphosphate synthase (gpps) and borneol dehydrogenase (bdh) in camphor biosynthesis. Further, the partitioning of camphor was attributed to tissue-specific gene expression of both the pathway entry point (gpps) and terminal (bdh) enzyme. Unlike camphor, eugenol accumulated more in roots; however, absence of the eugenol synthase gene in roots indicated long distance transport from aerial tissues. In silico co-expression analysis indicated the potential involvement of ATP-binding cassette, multidrug and toxic compound extrusion, and sugar transporters in eugenol transport. Similar partitioning was evident across five other Ocimum species. Overall, our work indicates that metabolite partitioning maybe a finely regulated process, which may have implications on plant growth, development, and defense.
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Affiliation(s)
- Priyanka Singh
- Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, 411008, Maharashtra, India; Division of Organic Chemistry, CSIR-National Chemical Laboratory, Pune, 411008, Maharashtra, India
| | - Raviraj M Kalunke
- Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, 411008, Maharashtra, India
| | - Anurag Shukla
- Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, 411008, Maharashtra, India
| | - Oren Tzfadia
- Department of Plant Systems Biology, Ghent University, Belgium
| | - Hirekodathakallu V Thulasiram
- Division of Organic Chemistry, CSIR-National Chemical Laboratory, Pune, 411008, Maharashtra, India; CSIR- Institute of Genomics and Integrative Biology, Mall Road, New Delhi, 110007, India
| | - Ashok P Giri
- Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, 411008, Maharashtra, India.
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Meco V, Egea I, Ortíz-Atienza A, Drevensek S, Esch E, Yuste-Lisbona FJ, Barneche F, Vriezen W, Bolarin MC, Lozano R, Flores FB. The Salt Sensitivity Induced by Disruption of Cell Wall-Associated Kinase 1 ( SlWAK1) Tomato Gene Is Linked to Altered Osmotic and Metabolic Homeostasis. Int J Mol Sci 2020; 21:E6308. [PMID: 32878190 PMCID: PMC7503591 DOI: 10.3390/ijms21176308] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 08/24/2020] [Accepted: 08/28/2020] [Indexed: 02/07/2023] Open
Abstract
Tomato cell wall-associated kinase 1 (SlWAK1) has only been studied in biotic stress response and hence its function in abiotic stress remains unknown. In a screening under salinity of an insertional mutant collection of tomato (Solanum lycopersicum L.), a mutant exhibiting lower degree of leaf chlorosis than wild type (WT) together with reduced leaf Na+ accumulation was selected. Genetic analysis of the mutation revealed that a single T-DNA insertion in the SlWAK1 gene was responsible of the mutant phenotype. Slwak1 null mutant reduced its shoot growth compared with WT, despite its improved Na+ homeostasis. SlWAK1 disruption affected osmotic homeostasis, as leaf water content was lower in mutant than in WT under salt stress. In addition, Slwak1 altered the source-sink balance under salinity, by increasing sucrose content in roots. Finally, a significant fruit yield reduction was found in Slwak1 vs. WT under long-term salt stress, mainly due to lower fruit weight. Our results show that disruption of SlWAK1 induces a higher sucrose transport from source leaf to sink root, negatively affecting fruit, the main sink at adult stage.
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Affiliation(s)
- Victoriano Meco
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario de Espinardo, 30100 Murcia, Spain; (I.E.); (M.C.B.); (F.B.F.)
| | - Isabel Egea
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario de Espinardo, 30100 Murcia, Spain; (I.E.); (M.C.B.); (F.B.F.)
| | - Ana Ortíz-Atienza
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL). Universidad de Almería, 04120 Almería, Spain; (A.O.-A.); (F.J.Y.-L.); (R.L.)
| | - Stéphanie Drevensek
- Institut de Biologie de l’École Normale Supérieure (IBENS), Paris Sciences et Lettres Research University, F-75005 Paris, France; (S.D.); (F.B.)
| | - Elisabeth Esch
- BASF Vegetable Seeds, Napoleonsweg 152, 6083AB Nunhem, The Netherlands; (E.E.); (W.V.)
| | - Fernando J. Yuste-Lisbona
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL). Universidad de Almería, 04120 Almería, Spain; (A.O.-A.); (F.J.Y.-L.); (R.L.)
| | - Fredy Barneche
- Institut de Biologie de l’École Normale Supérieure (IBENS), Paris Sciences et Lettres Research University, F-75005 Paris, France; (S.D.); (F.B.)
| | - Wim Vriezen
- BASF Vegetable Seeds, Napoleonsweg 152, 6083AB Nunhem, The Netherlands; (E.E.); (W.V.)
| | - María C. Bolarin
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario de Espinardo, 30100 Murcia, Spain; (I.E.); (M.C.B.); (F.B.F.)
| | - Rafael Lozano
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL). Universidad de Almería, 04120 Almería, Spain; (A.O.-A.); (F.J.Y.-L.); (R.L.)
| | - Francisco B. Flores
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario de Espinardo, 30100 Murcia, Spain; (I.E.); (M.C.B.); (F.B.F.)
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Chen G, Chen H, Shi K, Raza MA, Bawa G, Sun X, Pu T, Yong T, Liu W, Liu J, Du J, Yang F, Yang W, Wang X. Heterogeneous Light Conditions Reduce the Assimilate Translocation Towards Maize Ears. PLANTS 2020; 9:plants9080987. [PMID: 32759776 PMCID: PMC7465644 DOI: 10.3390/plants9080987] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 07/27/2020] [Accepted: 07/29/2020] [Indexed: 11/16/2022]
Abstract
The border row crop in strip intercropped maize is often exposed to heterogeneous light conditions, resulting in increased photosynthesis and yield decreased. Previous studies have focused on photosynthetic productivity, whereas carbon allocation could also be one of the major causes of decreased yield. However, carbon distribution remains unclear in partially shaded conditions. In the present study, we applied heterogeneous light conditions (T), and one side of plants was shaded (T-30%), keeping the other side fully exposed to light (T-100%), as compared to control plants that were exposed entirely to full-light (CK). Dry weight, carbon assimilation, 13C abundance, and transport tissue structure were analyzed to clarify the carbon distribution in partial shading of plants. T caused a marked decline in dry weight and harvest index (HI), whereas dry weight in unshaded and shaded leaves did not differ. Net photosynthesis rate (Pn), the activity of sucrose phosphate synthase enzymes (SPS), and sucrose concentration increased in unshaded leaves. Appropriately, 5.7% of the 13C from unshaded leaves was transferred to shaded leaves. Furthermore, plasmodesma density in the unshaded (T-100%) and shaded (T-30%) leaves in T was not significantly different but was lower than that of CK. Similarly, the vascular bundle total area of T was decreased. 13C transfer from unshaded leaves to ear in T was decreased by 18.0% compared with that in CK. Moreover, 13C and sucrose concentration of stem in T were higher than those in CK. Our results suggested that, under heterogeneous light, shaded leaves as a sink imported the carbohydrates from the unshaded leaves. Ear and shaded leaf competed for carbohydrates, and were not conducive to tissue structure of sucrose transport, resulting in a decrease in the carbon proportion in the ear, harvest index, and ear weight.
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Affiliation(s)
- Guopeng Chen
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Hong Chen
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Kai Shi
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Muhammad Ali Raza
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - George Bawa
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Xin Sun
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Tian Pu
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Taiwen Yong
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Weiguo Liu
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Jiang Liu
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Junbo Du
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Feng Yang
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Wenyu Yang
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
| | - Xiaochun Wang
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (G.C.); (H.C.); (K.S.); (M.A.R.); (G.B.); (X.S.); (T.P.); (T.Y.); (W.L.); (J.L.); (J.D.); (F.Y.); (W.Y.)
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Key Laboratory of Crop Ecophysiology and Farming System in Southwest China (Ministry of Agriculture), Chengdu 611130, China
- Correspondence: ; Tel.: +86-028-8629-0906
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Capel C, Albaladejo I, Egea I, Massaretto IL, Yuste‐Lisbona FJ, Pineda B, García‐Sogo B, Angosto T, Flores FB, Moreno V, Lozano R, Bolarín MC, Capel J. The res (restored cell structure by salinity) tomato mutant reveals the role of the DEAD-box RNA helicase SlDEAD39 in plant development and salt response. PLANT, CELL & ENVIRONMENT 2020; 43:1722-1739. [PMID: 32329086 PMCID: PMC7384196 DOI: 10.1111/pce.13776] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 04/04/2020] [Accepted: 04/13/2020] [Indexed: 05/29/2023]
Abstract
Increasing evidences highlight the importance of DEAD-box RNA helicases in plant development and stress responses. In a previous study, we characterized the tomato res mutant (restored cell structure by salinity), showing chlorosis and development alterations that reverted under salt-stress conditions. Map-based cloning demonstrates that RES gene encodes SlDEAD39, a chloroplast-targeted DEAD-box RNA helicase. Constitutive expression of SlDEAD39 complements the res mutation, while the silencing lines had a similar phenotype than res mutant, which is also reverted under salinity. Functional analysis of res mutant proved SlDEAD39 is involved in the in vivo processing of the chloroplast, 23S rRNA, at the hidden break-B site, a feature also supported by in vitro binding experiments of the protein. In addition, our results show that other genes coding for chloroplast-targeted DEAD-box proteins are induced by salt-stress, which might explain the rescue of the res mutant phenotype. Interestingly, salinity restored the phenotype of res adult plants by increasing their sugar content and fruit yield. Together, these results propose an unprecedented role of a DEAD-box RNA helicase in regulating plant development and stress response through the proper ribosome and chloroplast functioning, which, in turn, represents a potential target to improve salt tolerance in tomato crops.
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Affiliation(s)
- Carmen Capel
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL)Universidad de AlmeríaAlmeríaSpain
| | - Irene Albaladejo
- Centro de Edafología y Biología Aplicada del Segura (CEBAS‐CSIC)Campus Universitario de EspinardoEspinardo‐MurciaSpain
- Ctra Viator‐PJ. Mami S/NAlmeríaSpain
| | - Isabel Egea
- Centro de Edafología y Biología Aplicada del Segura (CEBAS‐CSIC)Campus Universitario de EspinardoEspinardo‐MurciaSpain
| | - Isabel L. Massaretto
- Department of Food Science and Experimental Nutrition, School of Pharmaceutical Sciences, Food Research Center (FoRC‐CEPID)University of São PauloSão PauloBrazil
| | | | - Benito Pineda
- Instituto de Biología Molecular y Celular de Plantas (IBMCP‐UPV/CSIC)Universidad Politécnica de ValenciaValenciaSpain
| | - Begoña García‐Sogo
- Instituto de Biología Molecular y Celular de Plantas (IBMCP‐UPV/CSIC)Universidad Politécnica de ValenciaValenciaSpain
| | - Trinidad Angosto
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL)Universidad de AlmeríaAlmeríaSpain
| | - Francisco B. Flores
- Centro de Edafología y Biología Aplicada del Segura (CEBAS‐CSIC)Campus Universitario de EspinardoEspinardo‐MurciaSpain
| | - Vicente Moreno
- Instituto de Biología Molecular y Celular de Plantas (IBMCP‐UPV/CSIC)Universidad Politécnica de ValenciaValenciaSpain
| | - Rafael Lozano
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL)Universidad de AlmeríaAlmeríaSpain
| | - María C. Bolarín
- Centro de Edafología y Biología Aplicada del Segura (CEBAS‐CSIC)Campus Universitario de EspinardoEspinardo‐MurciaSpain
| | - Juan Capel
- Centro de Investigación en Biotecnología Agroalimentaria (BITAL)Universidad de AlmeríaAlmeríaSpain
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Renau-Morata B, Carrillo L, Cebolla-Cornejo J, Molina RV, Martí R, Domínguez-Figueroa J, Vicente-Carbajosa J, Medina J, Nebauer SG. The targeted overexpression of SlCDF4 in the fruit enhances tomato size and yield involving gibberellin signalling. Sci Rep 2020; 10:10645. [PMID: 32606421 PMCID: PMC7326986 DOI: 10.1038/s41598-020-67537-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Accepted: 06/09/2020] [Indexed: 12/19/2022] Open
Abstract
Tomato is one of the most widely cultivated vegetable crops and a model for studying fruit biology. Although several genes involved in the traits of fruit quality, development and size have been identified, little is known about the regulatory genes controlling its growth. In this study, we characterized the role of the tomato SlCDF4 gene in fruit development, a cycling DOF-type transcription factor highly expressed in fruits. The targeted overexpression of SlCDF4 gene in the fruit induced an increased yield based on a higher amount of both water and dry matter accumulated in the fruits. Accordingly, transcript levels of genes involved in water transport and cell division and expansion during the fruit enlargement phase also increased. Furthermore, the larger amount of biomass partitioned to the fruit relied on the greater sink strength of the fruits induced by the increased activity of sucrose-metabolising enzymes. Additionally, our results suggest a positive role of SlCDF4 in the gibberellin-signalling pathway through the modulation of GA4 biosynthesis. Finally, the overexpression of SlCDF4 also promoted changes in the profile of carbon and nitrogen compounds related to fruit quality. Overall, our results unveil SlCDF4 as a new key factor controlling tomato size and composition.
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Affiliation(s)
- Begoña Renau-Morata
- Plant Physiology Area, Department of Plant Production, Universitat Politècnica de València, Valencia, Spain
| | - Laura Carrillo
- Centro de Biotecnología y Genómica de Plantas, INIA-Universidad Politécnica de Madrid, Madrid, Spain
| | - Jaime Cebolla-Cornejo
- Unidad Mixta de Investigación Mejora de la Calidad Agroalimentaria UJI-UPV, COMAV, Universitat Politècnica de València, Valencia, Spain
| | - Rosa V Molina
- Plant Physiology Area, Department of Plant Production, Universitat Politècnica de València, Valencia, Spain
| | - Raúl Martí
- Unidad Mixta de Investigación Mejora de la Calidad Agroalimentaria UJI-UPV, COMAV, Universitat Politècnica de València, Valencia, Spain
| | - José Domínguez-Figueroa
- Centro de Biotecnología y Genómica de Plantas, INIA-Universidad Politécnica de Madrid, Madrid, Spain
| | - Jesús Vicente-Carbajosa
- Centro de Biotecnología y Genómica de Plantas, INIA-Universidad Politécnica de Madrid, Madrid, Spain
| | - Joaquín Medina
- Centro de Biotecnología y Genómica de Plantas, INIA-Universidad Politécnica de Madrid, Madrid, Spain.
| | - Sergio G Nebauer
- Plant Physiology Area, Department of Plant Production, Universitat Politècnica de València, Valencia, Spain.
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Sanmartín N, Pastor V, Pastor-Fernández J, Flors V, Pozo MJ, Sánchez-Bel P. Role and mechanisms of callose priming in mycorrhiza-induced resistance. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2769-2781. [PMID: 31985797 PMCID: PMC7210776 DOI: 10.1093/jxb/eraa030] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Accepted: 03/11/2020] [Indexed: 05/12/2023]
Abstract
Mycorrhizal plants display enhanced resistance to several pathogens. However, the molecular mechanisms regulating mycorrhiza-induced resistance (MIR) are still elusive. We aim to study the mechanisms underlying MIR against Botrytis cinerea and the role of callose accumulation during this process. Mycorrhizal tomato plants inoculated with Rhizoglomus irregularis displayed callose priming upon B. cinerea infection. The callose inhibitor 2-deoxy-d-glucose abolished MIR, confirming the relevance of callose in the bioprotection phenomena. While studying the mechanisms underlying mycorrhiza-induced callose priming, we found that mycorrhizal plants display an enhanced starch degradation rate that is correlated with increased levels of β-amylase1 transcripts following pathogen infection. Starch mobilization in mycorrhizal plants seems coordinated with the increased transcription of sugar transporter and invertase genes. Moreover, the expression levels of genes encoding the vesicular trafficking proteins ATL31 and SYP121 and callose synthase PMR4 were higher in the mycorrhizal plants and further boosted by subsequent pathogen infection. All these proteins play a key role in the priming of callose accumulation in Arabidopsis, suggesting that callose priming is an induced resistance mechanism conserved in different plant species. This evidence highlights the importance of sugar mobilization and vesicular trafficking in the priming of callose as a defence mechanism in mycorrhiza-induced resistance.
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Affiliation(s)
- Neus Sanmartín
- Metabolic Integration and Cell Signaling Laboratory, Plant Physiology Section, Unidad Asociada al Consejo Superior de Investigaciones Científicas (EEZ-CSIC)-Department of Ciencias Agrarias y del Medio Natural, Universitat Jaume I, Castellón, Spain
| | - Victoria Pastor
- Metabolic Integration and Cell Signaling Laboratory, Plant Physiology Section, Unidad Asociada al Consejo Superior de Investigaciones Científicas (EEZ-CSIC)-Department of Ciencias Agrarias y del Medio Natural, Universitat Jaume I, Castellón, Spain
| | - Julia Pastor-Fernández
- Metabolic Integration and Cell Signaling Laboratory, Plant Physiology Section, Unidad Asociada al Consejo Superior de Investigaciones Científicas (EEZ-CSIC)-Department of Ciencias Agrarias y del Medio Natural, Universitat Jaume I, Castellón, Spain
| | - Victor Flors
- Metabolic Integration and Cell Signaling Laboratory, Plant Physiology Section, Unidad Asociada al Consejo Superior de Investigaciones Científicas (EEZ-CSIC)-Department of Ciencias Agrarias y del Medio Natural, Universitat Jaume I, Castellón, Spain
| | - Maria Jose Pozo
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín (CSIC), Granada, Spain
| | - Paloma Sánchez-Bel
- Metabolic Integration and Cell Signaling Laboratory, Plant Physiology Section, Unidad Asociada al Consejo Superior de Investigaciones Científicas (EEZ-CSIC)-Department of Ciencias Agrarias y del Medio Natural, Universitat Jaume I, Castellón, Spain
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60
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Rowland SD, Zumstein K, Nakayama H, Cheng Z, Flores AM, Chitwood DH, Maloof JN, Sinha NR. Leaf shape is a predictor of fruit quality and cultivar performance in tomato. THE NEW PHYTOLOGIST 2020; 226:851-865. [PMID: 31880321 PMCID: PMC7187315 DOI: 10.1111/nph.16403] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 12/14/2019] [Indexed: 05/04/2023]
Abstract
Commercial tomato (Solanum lycopersicum) is one of the most widely grown vegetable crops worldwide. Heirloom tomatoes retain extensive genetic diversity and a considerable range of fruit quality and leaf morphological traits. Here the role of leaf morphology was investigated for its impact on fruit quality. Heirloom cultivars were grown in field conditions, and BRIX by yield (BY) and other traits were measured over a 14-wk period. The complex relationships among these morphological and physiological traits were evaluated using partial least-squares path modeling, and a consensus model was developed. Photosynthesis contributed strongly to vegetative biomass and sugar content of fruits but had a negative impact on yield. Conversely leaf shape, specifically rounder leaves, had a strong positive impact on both fruit sugar content and yield. Cultivars such as Stupice and Glacier, with very round leaves, had the highest performance in both fruit sugar and yield. Our model accurately predicted BY for two commercial cultivars using leaf shape data as input. This study revealed the importance of leaf shape to fruit quality in tomato, with rounder leaves having significantly improved fruit quality. This correlation was maintained across a range of diverse genetic backgrounds and shows the importance of leaf morphology in tomato crop improvement.
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Affiliation(s)
| | | | - Hokuto Nakayama
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
- Gradute School of ScienceUniversity of TokyoHongo Bunkyo‐kuTokyo113‐0033Japan
| | - Zizhang Cheng
- College of ScienceSichuan Agriculture UniversityYaanSichuan Province625014China
| | - Amber M. Flores
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
| | - Daniel H. Chitwood
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
- Department of HorticultureMichigan State UniversityEast LansingMI48824USA
| | - Julin N. Maloof
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
| | - Neelima R. Sinha
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
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Dantas LLDB, Almeida-Jesus FM, de Lima NO, Alves-Lima C, Nishiyama-Jr MY, Carneiro MS, Souza GM, Hotta CT. Rhythms of Transcription in Field-Grown Sugarcane Are Highly Organ Specific. Sci Rep 2020; 10:6565. [PMID: 32300143 PMCID: PMC7162945 DOI: 10.1038/s41598-020-63440-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2019] [Accepted: 03/25/2020] [Indexed: 12/29/2022] Open
Abstract
Circadian clocks improve plant fitness in a rhythmic environment. As each cell has its own circadian clock, we hypothesized that sets of cells with different functions would have distinct rhythmic behaviour. To test this, we investigated whether different organs in field-grown sugarcane follow the same rhythms in transcription. We assayed the transcriptomes of three organs during a day: leaf, a source organ; internodes 1 and 2, sink organs focused on cell division and elongation; and internode 5, a sink organ focused on sucrose storage. The leaf had twice as many rhythmic transcripts (>68%) as internodes, and the rhythmic transcriptomes of the internodes were more like each other than to those of the leaves. Among the transcripts expressed in all organs, only 7.4% showed the same rhythmic pattern. Surprisingly, the central oscillators of these organs - the networks that generate circadian rhythms - had similar dynamics, albeit with different amplitudes. The differences in rhythmic transcriptomes probably arise from amplitude differences in tissue-specific circadian clocks and different sensitivities to environmental cues, highlighted by the sampling under field conditions. The vast differences suggest that we must study tissue-specific circadian clocks in order to understand how the circadian clock increases the fitness of the whole plant.
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Affiliation(s)
- Luíza Lane de Barros Dantas
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, 05508-000, Brazil
- Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | | | - Natalia Oliveira de Lima
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, 05508-000, Brazil
| | - Cícero Alves-Lima
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, 05508-000, Brazil
| | | | - Monalisa Sampaio Carneiro
- Departamento de Biotecnologia e Produção Vegetal e Animal, Centro de Ciências Agrárias, Universidade Federal de São Carlos, São Carlos, SP, 13600-970, Brazil
| | - Glaucia Mendes Souza
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, 05508-000, Brazil
| | - Carlos Takeshi Hotta
- Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, 05508-000, Brazil.
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Kuhalskaya A, Wijesingha Ahchige M, Perez de Souza L, Vallarino J, Brotman Y, Alseekh S. Network Analysis Provides Insight into Tomato Lipid Metabolism. Metabolites 2020; 10:metabo10040152. [PMID: 32295308 PMCID: PMC7240963 DOI: 10.3390/metabo10040152] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 03/26/2020] [Accepted: 04/11/2020] [Indexed: 11/16/2022] Open
Abstract
Metabolic correlation networks have been used in several instances to obtain a deeper insight into the complexity of plant metabolism as a whole. In tomato (Solanum lycopersicum), metabolites have a major influence on taste and overall fruit quality traits. Previously a broad spectrum of metabolic and phenotypic traits has been described using a Solanum pennellii introgression-lines (ILs) population. To obtain insights into tomato fruit metabolism, we performed metabolic network analysis from existing data, covering a wide range of metabolic traits, including lipophilic and volatile compounds, for the first time. We provide a comprehensive fruit correlation network and show how primary, secondary, lipophilic, and volatile compounds connect to each other and how the individual metabolic classes are linked to yield-related phenotypic traits. Results revealed a high connectivity within and between different classes of lipophilic compounds, as well as between lipophilic and secondary metabolites. We focused on lipid metabolism and generated a gene-expression network with lipophilic metabolites to identify new putative lipid-related genes. Metabolite–transcript correlation analysis revealed key putative genes involved in lipid biosynthesis pathways. The overall results will help to deepen our understanding of tomato metabolism and provide candidate genes for transgenic approaches toward improving nutritional qualities in tomato.
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Affiliation(s)
- Anastasiya Kuhalskaya
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; (A.K.); (M.W.A.); (L.P.d.S.); (J.V.); (Y.B.)
- Department of Life Sciences, Ben Gurion University of the Negev, 84105 Beersheva, Israel
| | - Micha Wijesingha Ahchige
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; (A.K.); (M.W.A.); (L.P.d.S.); (J.V.); (Y.B.)
| | - Leonardo Perez de Souza
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; (A.K.); (M.W.A.); (L.P.d.S.); (J.V.); (Y.B.)
| | - José Vallarino
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; (A.K.); (M.W.A.); (L.P.d.S.); (J.V.); (Y.B.)
| | - Yariv Brotman
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; (A.K.); (M.W.A.); (L.P.d.S.); (J.V.); (Y.B.)
- Department of Life Sciences, Ben Gurion University of the Negev, 84105 Beersheva, Israel
| | - Saleh Alseekh
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; (A.K.); (M.W.A.); (L.P.d.S.); (J.V.); (Y.B.)
- Centre of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
- Correspondence: ; Tel.: +49-(0)331-567-8211
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Hou X, Zhang W, Du T, Kang S, Davies WJ. Responses of water accumulation and solute metabolism in tomato fruit to water scarcity and implications for main fruit quality variables. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:1249-1264. [PMID: 31750924 PMCID: PMC7242001 DOI: 10.1093/jxb/erz526] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Accepted: 11/20/2019] [Indexed: 05/10/2023]
Abstract
Fruit is important for human health, and applying deficit irrigation in fruit production is a strategy to regulate fruit quality and support environmental sustainability. Responses of different fruit quality variables to deficit irrigation have been widely documented, and much progress has been made in understanding the mechanisms of these responses. We review the effects of water shortage on fruit water accumulation considering water transport from the parent plant into the fruit determined by hydraulic properties of the pathway (including xylem water transport and transmembrane water transport regulated by aquaporins) and the driving force for water movement. We discuss water relations and solute metabolism that affect the main fruit quality variables (e.g. size, flavour, nutrition, and firmness) at the cellular level under water shortage. We also summarize the most recent advances in the understanding of responses of the main fruit quality variables to water shortage, considering the effects of variety, the severity of water deficit imposed, and the developmental stage of the fruit. We finally identify knowledge gaps and suggest avenues for future research. This review provides new insights into the stress physiology of fleshy fruit, which will be beneficial for the sustainable production of high-quality fruit under deficit irrigation.
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Affiliation(s)
- Xuemin Hou
- Center for Agricultural Water Research in China, China Agricultural University, Beijing, China
| | - Wendong Zhang
- Center for Agricultural Water Research in China, China Agricultural University, Beijing, China
| | - Taisheng Du
- Center for Agricultural Water Research in China, China Agricultural University, Beijing, China
| | - Shaozhong Kang
- Center for Agricultural Water Research in China, China Agricultural University, Beijing, China
| | - William J Davies
- Lancaster Environment Centre, Lancaster University, Bailrigg, Lancaster, UK
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Geng Y, Wu M, Zhang C. Sugar Transporter ZjSWEET2.2 Mediates Sugar Loading in Leaves of Ziziphus jujuba Mill. FRONTIERS IN PLANT SCIENCE 2020; 11:1081. [PMID: 32849678 PMCID: PMC7396580 DOI: 10.3389/fpls.2020.01081] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 06/30/2020] [Indexed: 05/11/2023]
Abstract
In plants, sugar transporters play an important role in the allocation of sugars from cells in source organs to cells in sink organs. Hence, an understanding of the molecular basis and regulation of assimilate partitioning by sugar transporters is essential. Leaves are the main source of photosynthetic products. In jujube (Ziziphus jujuba Mill.), the mechanisms regulating initial sugar unloading in leaves are still unclear. In this study, an expression profiling analysis showed that ZjSWEET2.2, encoding a sugar transporter in the SWEET family, is highly expressed in leaves. Over-expression of ZjSWEET2.2 increased carbon fixation in photosynthetic organs. Our analyses showed that ZjSWEET2.2 encodes a plasma membrane-localized sugar transporter protein. Its expression levels were found to be suppressed under drought stress and by high concentrations of exogenous sugars, but increased by low concentrations of exogenous sugars. Finally, DNA sequence analyses revealed several cis-elements related to sugar signaling in the promoter of ZjSWEET2.2. Together, these results suggest that ZjSWEET2.2 functions to mediate photosynthesis by exporting sugars from photosynthetic cells in the leaves, and its gene expression is regulated by sugar signals.
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65
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Yan BF, Nguyen C, Pokrovsky OS, Candaudap F, Coriou C, Bussière S, Robert T, Cornu JY. Cadmium allocation to grains in durum wheat exposed to low Cd concentrations in hydroponics. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 184:109592. [PMID: 31499445 DOI: 10.1016/j.ecoenv.2019.109592] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 07/16/2019] [Accepted: 08/19/2019] [Indexed: 05/22/2023]
Abstract
This study aims to characterize the response of durum wheat to different concentrations of Cd found in agricultural soils. One French durum wheat cultivar (i.e. Sculptur) was exposed to low concentrations of Cd (5 nM or 100 nM) in hydroponics. After anthesis, the plants were fed with a solution enriched with the stable isotope 111Cd to trace the newly absorbed Cd. Plants were sampled at anthesis and grain maturity to assess how plant growth, Cd uptake and partitioning among organs, as well as Cd remobilization, differed between the two Cd exposure levels. Durum wheat did not show any visual symptoms of Cd toxicity, regardless of which Cd treatment was applied. However, post-anthesis durum wheat growth was 14% penalized at 100 nM due to the large transpiration-based accumulation of Cd in leaves at this stage. The allocation of Cd to the grains was not restricted but enhanced at 100 nM compared to 5 nM. Both the root-to-shoot Cd translocation and the fraction of aboveground Cd allocated to grains were higher in plants exposed to 100 nM. Cadmium was remobilized exclusively from roots and stems, and remobilized Cd contributed on average to 40-45% of the Cd accumulated in mature grains, regardless of which Cd treatment was applied. The relevance of these results to decreasing the concentration of Cd in durum wheat grains is discussed.
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Affiliation(s)
- B F Yan
- ISPA, Bordeaux Sciences Agro, INRA, 33140, Villenave d'Ornon, France
| | - C Nguyen
- ISPA, Bordeaux Sciences Agro, INRA, 33140, Villenave d'Ornon, France
| | - O S Pokrovsky
- Université Toulouse, CNRS, GET, UMR 5563, F-31400, Toulouse, France; IO-GEO-CLIM Laboratory, Tomsk State University, 36 Lenina Prospekt, Tomsk, 630050, Russia
| | - F Candaudap
- Université Toulouse, CNRS, GET, UMR 5563, F-31400, Toulouse, France
| | - C Coriou
- ISPA, Bordeaux Sciences Agro, INRA, 33140, Villenave d'Ornon, France
| | - S Bussière
- ISPA, Bordeaux Sciences Agro, INRA, 33140, Villenave d'Ornon, France
| | - T Robert
- ISPA, Bordeaux Sciences Agro, INRA, 33140, Villenave d'Ornon, France
| | - J Y Cornu
- ISPA, Bordeaux Sciences Agro, INRA, 33140, Villenave d'Ornon, France.
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66
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Li Y, Tu M, Feng Y, Wang W, Messing J. Common metabolic networks contribute to carbon sink strength of sorghum internodes: implications for bioenergy improvement. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:274. [PMID: 31832097 PMCID: PMC6868837 DOI: 10.1186/s13068-019-1612-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 11/09/2019] [Indexed: 05/24/2023]
Abstract
BACKGROUND Sorghum bicolor (L.) is an important bioenergy source. The stems of sweet sorghum function as carbon sinks and accumulate large amounts of sugars and lignocellulosic biomass and considerable amounts of starch, therefore providing a model of carbon allocation and accumulation for other bioenergy crops. While omics data sets for sugar accumulation have been reported in different genotypes, the common features of primary metabolism in sweet genotypes remain unclear. To obtain a cohesive and comparative picture of carbohydrate metabolism between sorghum genotypes, we compared the phenotypes and transcriptome dynamics of sugar-accumulating internodes among three different sweet genotypes (Della, Rio, and SIL-05) and two non-sweet genotypes (BTx406 and R9188). RESULTS Field experiments showed that Della and Rio had similar dynamics and internode patterns of sugar concentration, albeit distinct other phenotypes. Interestingly, cellulose synthases for primary cell wall and key genes in starch synthesis and degradation were coordinately upregulated in sweet genotypes. Sweet sorghums maintained active monolignol biosynthesis compared to the non-sweet genotypes. Comparative RNA-seq results support the role of candidate Tonoplast Sugar Transporter gene (TST), but not the Sugars Will Eventually be Exported Transporter genes (SWEETs) in the different sugar accumulations between sweet and non-sweet genotypes. CONCLUSIONS Comparisons of the expression dynamics of carbon metabolic genes across the RNA-seq data sets identify several candidate genes with contrasting expression patterns between sweet and non-sweet sorghum lines, including genes required for cellulose and monolignol synthesis (CesA, PTAL, and CCR), starch metabolism (AGPase, SS, SBE, and G6P-translocator SbGPT2), and sucrose metabolism and transport (TPP and TST2). The common transcriptome features of primary metabolism identified here suggest the metabolic networks contributing to carbon sink strength in sorghum internodes, prioritize the candidate genes for manipulating carbon allocation with bioenergy purposes, and provide a comparative and cohesive picture of the complexity of carbon sink strength in sorghum stem.
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Affiliation(s)
- Yin Li
- Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854 USA
| | - Min Tu
- Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854 USA
| | - Yaping Feng
- Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854 USA
| | - Wenqing Wang
- School of Agriculture and Biology, Shanghai Jiaotong University, 800 Dong Chuan Road, Shanghai, 200240 China
| | - Joachim Messing
- Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854 USA
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67
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Fabre D, Yin X, Dingkuhn M, Clément-Vidal A, Roques S, Rouan L, Soutiras A, Luquet D. Is triose phosphate utilization involved in the feedback inhibition of photosynthesis in rice under conditions of sink limitation? JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:5773-5785. [PMID: 31269202 DOI: 10.1093/jxb/erz318] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 06/27/2019] [Indexed: 05/02/2023]
Abstract
This study aimed to understand the physiological basis of rice photosynthetic response to C source-sink imbalances, focusing on the dynamics of the photosynthetic parameter triose phosphate utilization (TPU). Here, rice (Oriza sativa L.) indica cultivar IR64 were grown in controlled environment chambers under current ambient CO2 concentration until heading, and thereafter two CO2 treatments (400 and 800 μmol mol-1) were compared in the presence and absence of a panicle-pruning treatment modifying the C sink. At 2 weeks after heading, photosynthetic parameters derived from CO2 response curves, and non-structural carbohydrate content of flag leaf and internodes were measured three to four times of day. Spikelet number per panicle and flag leaf area on the main culm were recorded. Net C assimilation and TPU decreased progressively after midday in panicle-pruned plants, especially under 800 μmol mol-1 CO2. This TPU reduction was explained by sucrose accumulation in the flag leaf resulting from the sink limitation. Taking together, our findings suggest that TPU is involved in the regulation of photosynthesis in rice under elevated CO2 conditions, and that sink limitation effects should be considered in crop models.
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Affiliation(s)
- Denis Fabre
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Xinyou Yin
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands
| | - Michael Dingkuhn
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Anne Clément-Vidal
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Sandrine Roques
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Lauriane Rouan
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Armelle Soutiras
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Delphine Luquet
- CIRAD, UMR AGAP, Montpellier, France
- Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
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68
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Pontiggia D, Spinelli F, Fabbri C, Licursi V, Negri R, De Lorenzo G, Mattei B. Changes in the microsomal proteome of tomato fruit during ripening. Sci Rep 2019; 9:14350. [PMID: 31586085 PMCID: PMC6778153 DOI: 10.1038/s41598-019-50575-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2019] [Accepted: 08/23/2019] [Indexed: 11/09/2022] Open
Abstract
The variations in the membrane proteome of tomato fruit pericarp during ripening have been investigated by mass spectrometry-based label-free proteomics. Mature green (MG30) and red ripe (R45) stages were chosen because they are pivotal in the ripening process: MG30 corresponds to the end of cellular expansion, when fruit growth has stopped and fruit starts ripening, whereas R45 corresponds to the mature fruit. Protein patterns were markedly different: among the 1315 proteins identified with at least two unique peptides, 145 significantly varied in abundance in the process of fruit ripening. The subcellular and biochemical fractionation resulted in GO term enrichment for organelle proteins in our dataset, and allowed the detection of low-abundance proteins that were not detected in previous proteomic studies on tomato fruits. Functional annotation showed that the largest proportion of identified proteins were involved in cell wall metabolism, vesicle-mediated transport, hormone biosynthesis, secondary metabolism, lipid metabolism, protein synthesis and degradation, carbohydrate metabolic processes, signalling and response to stress.
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Affiliation(s)
- Daniela Pontiggia
- Department of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Rome, Italy
| | - Francesco Spinelli
- Department of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Rome, Italy
| | - Claudia Fabbri
- Department of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Rome, Italy
| | - Valerio Licursi
- Department of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Rome, Italy.,Institute for Systems Analysis and Computer Science "Antonio Ruberti", National Research Council, Rome, Italy
| | - Rodolfo Negri
- Department of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Rome, Italy.,Foundation Cenci Bolognetti-Institut Pasteur, Rome, Italy
| | - Giulia De Lorenzo
- Department of Biology and Biotechnology "C. Darwin", Sapienza University of Rome, Rome, Italy. .,Foundation Cenci Bolognetti-Institut Pasteur, Rome, Italy.
| | - Benedetta Mattei
- Department of Life, Health and Environmental Sciences, University of L'Aquila, L'Aquila, Italy
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Ho LH, Klemens PAW, Neuhaus HE, Ko HY, Hsieh SY, Guo WJ. SlSWEET1a is involved in glucose import to young leaves in tomato plants. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3241-3254. [PMID: 30958535 PMCID: PMC6598072 DOI: 10.1093/jxb/erz154] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 03/20/2019] [Indexed: 05/04/2023]
Abstract
Sugar allocation from source to sink (young) leaves, critical for plant development, relies on activities of plasma membrane sugar transporters. However, the key sugar unloading mechanism to sink leaves remains elusive. SWEET transporters mediate sugar efflux into reproductive sinks; therefore, they are promising candidates for sugar unloading during leaf growth. Transcripts of SlSWEET1a, belonging to clade I of the SWEET family, were markedly more abundant than those of all other 30 SlSWEET genes in young leaves of tomatoes. High expression of SlSWEET1a was also detected in reproductive sinks, such as flowers. SlSWEET1a was dominantly expressed in leaf unloading veins, and the green fluorescent protein (GFP) fusion protein was localized to the plasma membrane using Arabidopsis protoplasts, further implicating this carrier in sugar unloading. In addition, yeast growth assays and radiotracer uptake analyses further demonstrated that SlSWEET1a acted as a low-affinity (Km ~100 mM) glucose-specific carrier with a passive diffusion manner. Finally, virus-induced gene silencing of SlSWEET1a expression reduced hexose accumulation to ~50% in young leaves, with a parallel 2-fold increase in mature leaves. Thus, we propose a novel function for SlSWEET1a in the uptake of glucose into unloading cells as part of the sugar unloading mechanism in sink leaves of tomato.
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Affiliation(s)
- Li-Hsuan Ho
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan City, Taiwan
| | - Patrick A W Klemens
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Straße, Kaiserslautern, Germany
| | - H Ekkehard Neuhaus
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Straße, Kaiserslautern, Germany
| | - Han-Yu Ko
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan City, Taiwan
| | - Shu-Ying Hsieh
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan City, Taiwan
| | - Woei-Jiun Guo
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan City, Taiwan
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70
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de Ávila Silva L, Condori-Apfata JA, Marcelino MM, Tavares ACA, Raimundi SCJ, Martino PB, Araújo WL, Zsögön A, Sulpice R, Nunes-Nesi A. Nitrogen differentially modulates photosynthesis, carbon allocation and yield related traits in two contrasting Capsicum chinense cultivars. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 283:224-237. [PMID: 31128692 DOI: 10.1016/j.plantsci.2019.02.014] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Revised: 02/20/2019] [Accepted: 02/22/2019] [Indexed: 05/24/2023]
Abstract
Yield-related traits of Capsicum chinense are highly dependent on coordination between vegetative and reproductive growth, since the formation of reproductive tissues occurs iteratively in new sympodial bifurcations. In this study, we used two C. chinense cultivars (Biquinho and Habanero), contrasting for fruit size and fruit set, to investigate the responses of nitrogen (N) deficiency and excess on growth, photosynthesis, carbon (C) and N metabolisms as well as yield-related traits. Both cultivars increased biomass allocation to leaves in conditions of higher N supply and exhibited a parabolic behavior for fruit biomass allocation. Plants growing under N-deficiency produced a lower number of flowers and heavier fruits. Contrarily, plants under high N condition tended to decrease their CO2 assimilation rate, harvest index and fruit weight. Biquinho, the cultivar with lower fruit size and higher fruit set, was initially less affected by excess of N due to its continuous formation of new reproductive sinks in relation to Habanero (which has lower fruit set and higher fruit size). The results suggest that N amount influences sucrose supply to different organs and can differentially affect yield-related traits between Capsicum cultivars with contrasting source-sink relations.
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Affiliation(s)
- Lucas de Ávila Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Jorge A Condori-Apfata
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Mariana Marques Marcelino
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Ana C Azevedo Tavares
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Sábata C Januário Raimundi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Pedro Brandão Martino
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil; Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Agustin Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Ronan Sulpice
- National University of Ireland, Galway, Plant Systems Biology Lab, Plant and AgriBiosciences Research Centre, Ryan Institute, Ireland
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil.
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71
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Deblais L, Helmy YA, Testen A, Vrisman C, Jimenez Madrid AM, Kathayat D, Miller SA, Rajashekara G. Specific Environmental Temperature and Relative Humidity Conditions and Grafting Affect the Persistence and Dissemination of Salmonella enterica subsp. enterica Serotype Typhimurium in Tomato Plant Tissues. Appl Environ Microbiol 2019; 85:e00403-19. [PMID: 30926732 PMCID: PMC6532026 DOI: 10.1128/aem.00403-19] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 03/18/2019] [Indexed: 01/28/2023] Open
Abstract
Little is known about the abiotic factors contributing to the preharvest persistence of Salmonella in tomato tissues. Therefore, we investigated the effects of specific environmental conditions and contamination methods on the persistence and dissemination of Salmonella enterica subsp. enterica serotype Typhimurium (JSG626) in tomato plants. When plants were sprayed on the leaves with a JSG626-contaminated solution, JSG626 persistence in the phyllosphere (bacteria located on the surface of the inoculated foliage and stem tissues) was lower at higher temperatures (30°C day/25°C night) than at lower temperatures (20°C day/15°C night). However, wounding cotyledons with contaminated tools improved JSG626 persistence and the internalization rate (2.27%) in planta compared to spray inoculation (0.004%). The systemic dissemination of JSG626 to other tissues increased when contaminated plants were grown under low relative humidity (<40%); however, JSG626 was only detected in the root systems at later sampling times (between 21 and 98 days postinoculation [dpi]). Further, after tomato scions were grafted onto rootstocks using contaminated cutting tools, dissemination of JSG626 was preferentially basipetal and occasionally acropetal in the plants, with higher persistence rates and loads of JSG626 in root systems compared to foliar tissues. JSG626 was detected in the grafting point and root systems up to 242 dpi; however, none of the fruits harvested from contaminated plants between 90 and 137 dpi were positive for JSG626. This study demonstrates that environmental temperature and relative humidity could be good indicators for estimating the persistence of Salmonella enterica in tomato plants. Further, root systems may represent a risk for long-term persistence of Salmonella enterica in tomato plants.IMPORTANCE Tomatoes are one of the most widely produced vegetables around the world; however, fresh tomatoes have been connected to multiple wide-scale salmonellosis outbreaks over the past decades. Salmonella is commonly found in the environment and can persist in hostile conditions for several weeks before being internalized into plant tissues, where it is protected from conventional sanitation methods. In addition to biotic factors (host, inoculum size, and phytobiome), abiotic factors (environmental conditions) may affect the persistence of Salmonella in crop production. This study demonstrates that specific environmental conditions, the inoculation method, and the inoculum density affect the persistence and dissemination of JSG626 in tomato plant tissues. Our findings enhance the understanding of interactions between Salmonella enterica and fresh produce and may lead to the development of novel management practices on farms.
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Affiliation(s)
- Loïc Deblais
- Department of Veterinary Preventive Medicine, Food Animal Health Research Program, OARDC, Wooster, Ohio, USA
- Department of Plant Pathology, The Ohio State University, OARDC, Wooster, Ohio, USA
| | - Yosra A Helmy
- Department of Veterinary Preventive Medicine, Food Animal Health Research Program, OARDC, Wooster, Ohio, USA
| | - Anna Testen
- Department of Plant Pathology, The Ohio State University, OARDC, Wooster, Ohio, USA
| | - Claudio Vrisman
- Department of Plant Pathology, The Ohio State University, OARDC, Wooster, Ohio, USA
| | | | - Dipak Kathayat
- Department of Veterinary Preventive Medicine, Food Animal Health Research Program, OARDC, Wooster, Ohio, USA
| | - Sally A Miller
- Department of Plant Pathology, The Ohio State University, OARDC, Wooster, Ohio, USA
| | - Gireesh Rajashekara
- Department of Veterinary Preventive Medicine, Food Animal Health Research Program, OARDC, Wooster, Ohio, USA
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72
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Abelenda JA, Bergonzi S, Oortwijn M, Sonnewald S, Du M, Visser RGF, Sonnewald U, Bachem CWB. Source-Sink Regulation Is Mediated by Interaction of an FT Homolog with a SWEET Protein in Potato. Curr Biol 2019; 29:1178-1186.e6. [PMID: 30905604 DOI: 10.1016/j.cub.2019.02.018] [Citation(s) in RCA: 115] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Revised: 12/18/2018] [Accepted: 02/05/2019] [Indexed: 12/22/2022]
Abstract
Potato plants form tuberous storage organs on underground modified stems called stolons. Tubers are rich in starch, proteins, and other important nutrients, making potato one of the most important staple food crops. The timing of tuber development in wild potato is regulated by day length through a mechanism that is closely related to floral transition [1, 2]. Tuberization is also known to be regulated by the availability of assimilates, in particular sucrose, the transported form of sugar, required for starch synthesis. During the onset of tuber development, the mode of sucrose unloading switches from apoplastic to symplastic [3]. Here, we show that this switch may be mediated by the interaction between the tuberization-specific FT homolog StSP6A and the sucrose efflux transporter StSWEET11 [4]. The binding of StSP6A to StSWEET11 blocked the leakage of sucrose to the apoplast, and is therefore likely to promote symplastic sucrose transport. The direct physical interaction between StSWEET11 and StSP6A proteins represents a link between the sugar and photoperiodic pathways for the regulation of potato tuber formation. Our data suggest that a previously undiscovered function for the FT family of proteins extends their role as mobile signals to mediators of source-sink partitioning, opening the possibility for modifying source-sink interactions.
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Affiliation(s)
- José A Abelenda
- Plant Breeding, Wageningen University & Research, P.O. Box 386, 6700 AJ Wageningen, the Netherlands
| | - Sara Bergonzi
- Plant Breeding, Wageningen University & Research, P.O. Box 386, 6700 AJ Wageningen, the Netherlands
| | - Marian Oortwijn
- Plant Breeding, Wageningen University & Research, P.O. Box 386, 6700 AJ Wageningen, the Netherlands
| | - Sophia Sonnewald
- Division of Biochemistry, Department of Biology, University of Erlangen-Nuremberg, Staudtstrasse 5, 91058 Erlangen, Germany
| | - Miru Du
- Plant Breeding, Wageningen University & Research, P.O. Box 386, 6700 AJ Wageningen, the Netherlands; Inner Mongolia Potato Engineering & Technology Research Centre, Inner Mongolia University, West College Road 235, Hohhot 010021, China
| | - Richard G F Visser
- Plant Breeding, Wageningen University & Research, P.O. Box 386, 6700 AJ Wageningen, the Netherlands
| | - Uwe Sonnewald
- Division of Biochemistry, Department of Biology, University of Erlangen-Nuremberg, Staudtstrasse 5, 91058 Erlangen, Germany
| | - Christian W B Bachem
- Plant Breeding, Wageningen University & Research, P.O. Box 386, 6700 AJ Wageningen, the Netherlands.
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73
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Takei H, Shinozaki Y, Yano R, Kashojiya S, Hernould M, Chevalier C, Ezura H, Ariizumi T. Loss-of-Function of a Tomato Receptor-Like Kinase Impairs Male Fertility and Induces Parthenocarpic Fruit Set. FRONTIERS IN PLANT SCIENCE 2019; 10:403. [PMID: 31040856 PMCID: PMC6477066 DOI: 10.3389/fpls.2019.00403] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 03/18/2019] [Indexed: 05/12/2023]
Abstract
Parthenocarpy arises when an ovary develops into fruit without pollination/fertilization. The mechanisms involved in genetic parthenocarpy have attracted attention because of their potential application in plant breeding and also for their elucidation of the mechanisms involved in early fruit development. We have isolated and characterized a novel small parthenocarpic fruit and flower (spff) mutant in the tomato (Solanum lycopersicum) cultivar Micro-Tom. This plant showed both vegetative and reproductive phenotypes including dwarfism of floral organs, male sterility, delayed flowering, altered axillary shoot development, and parthenocarpic production of small fruits. Genome-wide single nucleotide polymorphism array analysis coupled with mapping-by-sequencing using next generation sequencing-based high-throughput approaches resulted in the identification of a candidate locus responsible for the spff mutant phenotype. Subsequent linkage analysis and RNA interference-based silencing indicated that these phenotypes were caused by a loss-of-function mutation of a single gene (Solyc04g077010), which encodes a receptor-like protein kinase that was expressed in vascular bundles in young buds. Cytological and transcriptomic analyses suggested that parthenocarpy in the spff mutant was associated with enlarged ovarian cells and with elevated expression of the gibberellin metabolism gene, GA20ox1. Taken together, our results suggest a role for Solyc04g077010 in male organ development and indicate that loss of this receptor-like protein kinase activity could result in parthenocarpy.
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Affiliation(s)
- Hitomi Takei
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
- Japan Society for the Promotion of Science (JSPS), Kôjimachi, Japan
| | - Yoshihito Shinozaki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
- Japan Society for the Promotion of Science (JSPS), Kôjimachi, Japan
| | - Ryoichi Yano
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Sachiko Kashojiya
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Michel Hernould
- UMR1332 BFP, Institut National de la Recherche Agronomique (INRA), Villenave-d’Ornon, France
- UMR1332 BFP, University of Bordeaux, Bordeaux, France
| | - Christian Chevalier
- UMR1332 BFP, Institut National de la Recherche Agronomique (INRA), Villenave-d’Ornon, France
| | - Hiroshi Ezura
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
- Tsukuba-Plant Innovation Research Center, University of Tsukuba, Tsukuba, Japan
| | - Tohru Ariizumi
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
- Tsukuba-Plant Innovation Research Center, University of Tsukuba, Tsukuba, Japan
- *Correspondence: Tohru Ariizumi,
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74
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Song Q, Liu Y, Pang J, Yong JWH, Chen Y, Bai C, Gille C, Shi Q, Wu D, Han X, Li T, Siddique KHM, Lambers H. Supplementary Calcium Restores Peanut ( Arachis hypogaea) Growth and Photosynthetic Capacity Under Low Nocturnal Temperature. FRONTIERS IN PLANT SCIENCE 2019; 10:1637. [PMID: 32038667 PMCID: PMC6985363 DOI: 10.3389/fpls.2019.01637] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 11/20/2019] [Indexed: 05/11/2023]
Abstract
Peanut (Arachis hypogaea L.) is a globally important oil crop, which often experiences poor growth and seedling necrosis under low nocturnal temperatures (LNT). This study assessed the effects of supplementary calcium (Ca2+) and a calmodulin inhibitor on peanut growth and photosynthetic characteristics of plants exposed to LNT, followed by recovery at a higher temperature. We monitored key growth and photosynthetic parameters in a climate-controlled chamber in pots containing soil. LNT reduced peanut growth and dry matter accumulation, enhanced leaf nonstructural carbohydrates concentrations and non-photochemical quenching, decreased the electron transport rate, increased the transmembrane proton gradient, and decreased gas exchange rates. In peanuts subjected to LNT, foliar application of Ca2+ restored growth, dry matter production and leaf photosynthetic capacity. In particular, the foliar Ca2+ application restored temperature-dependent photosynthesis feedback inhibition due to improved growth/sink demand. Foliar sprays of a calmodulin inhibitor further deteriorated the effects of LNT which validated the protective role of Ca2+ in facilitating LNT tolerance of peanuts.
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Affiliation(s)
- Qiaobo Song
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Station for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
| | - Yifei Liu
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Station for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- *Correspondence: Yifei Liu,
| | - Jiayin Pang
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Jean Wan Hong Yong
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- Department of Biosystems and Technology, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Yinglong Chen
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Chunming Bai
- Liaoning Academy of Agricultural Sciences, Shenyang, China
| | - Clément Gille
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
| | - Qingwen Shi
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Station for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
| | - Di Wu
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Station for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
| | - Xiaori Han
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Station for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
| | - Tianlai Li
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Station for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
| | | | - Hans Lambers
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing, China
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Li W, Sun K, Ren Z, Song C, Pei X, Liu Y, Wang Z, He K, Zhang F, Zhou X, Ma X, Yang D. Molecular Evolution and Stress and Phytohormone Responsiveness of SUT Genes in Gossypium hirsutum. Front Genet 2018; 9:494. [PMID: 30405700 PMCID: PMC6205988 DOI: 10.3389/fgene.2018.00494] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Accepted: 10/04/2018] [Indexed: 11/13/2022] Open
Abstract
Sucrose transporters (SUTs) play key roles in allocating the translocation of assimilates from source to sink tissues. Although the characteristics and biological roles of SUTs have been intensively investigated in higher plants, this gene family has not been functionally characterized in cotton. In this study, we performed a comprehensive analysis of SUT genes in the tetraploid cotton Gossypium hirsutum. A total of 18 G. hirsutum SUT genes were identified and classified into three groups based on their evolutionary relationships. Up to eight SUT genes in G. hirsutum were placed in the dicot-specific SUT1 group, while four and six SUT genes were, respectively, clustered into SUT4 and SUT2 groups together with members from both dicot and monocot species. The G. hirsutum SUT genes within the same group displayed similar exon/intron characteristics, and homologous genes in G. hirsutum At and Dt subgenomes, G. arboreum, and G. raimondii exhibited one-to-one relationships. Additionally, the duplicated genes in the diploid and polyploid cotton species have evolved through purifying selection, suggesting the strong conservation of SUT loci in these species. Expression analysis in different tissues indicated that SUT genes might play significant roles in cotton fiber elongation. Moreover, analyses of cis-acting regulatory elements in promoter regions and expression profiling under different abiotic stress and exogenous phytohormone treatments implied that SUT genes, especially GhSUT6A/D, might participate in plant responses to diverse abiotic stresses and phytohormones. Our findings provide valuable information for future studies on the evolution and function of SUT genes in cotton.
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Affiliation(s)
- Wei Li
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Kuan Sun
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Zhongying Ren
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | | | - Xiaoyu Pei
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Yangai Liu
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Zhenyu Wang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Kunlun He
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Fei Zhang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Xiaojian Zhou
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Xiongfeng Ma
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
| | - Daigang Yang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, China
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76
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Fukushima A, Hikosaka S, Kobayashi M, Nishizawa T, Saito K, Goto E, Kusano M. A Systems Analysis With "Simplified Source-Sink Model" Reveals Metabolic Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development in Tomato by LED Light Treatments. FRONTIERS IN PLANT SCIENCE 2018; 9:1439. [PMID: 30364178 PMCID: PMC6191670 DOI: 10.3389/fpls.2018.01439] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Accepted: 09/10/2018] [Indexed: 05/29/2023]
Abstract
Tomato (Solanum lycopersicum) is a model crop for studying development regulation and ripening in flesh fruits and vegetables. Supplementary light to maintain the optimal light environment can lead to the stable growth of tomatoes in greenhouses and areas without sufficient daily light integral. Technological advances in genome-wide molecular phenotyping have dramatically enhanced our understanding of metabolic shifts in the plant metabolism across tomato fruit development. However, comprehensive metabolic and transcriptional behaviors along the developmental process under supplementary light provided by light-emitting diodes (LEDs) remain to be fully elucidated. We present integrative omic approaches to identify the impact on the metabolism of a single tomato plant leaf exposed to monochromatic red LEDs of different intensities during the fruit development stage. Our special light delivery system, the "simplified source-sink model," involves the exposure of a single leaf below the second truss to red LED light of different intensities. We evaluated fruit-size- and fruit-shape variations elicited by different light intensities. Our findings suggest that more than high-light treatment (500 μmol m-2 s-1) with the red LED light is required to accelerate fruit growth for 2 weeks after anthesis. To investigate transcriptomic and metabolomic changes in leaf- and fruit samples we used microarray-, RNA sequencing-, and gas chromatography-mass spectrometry techniques. We found that metabolic shifts in the carbohydrate metabolism and in several key pathways contributed to fruit development, including ripening and cell-wall modification. Our findings suggest that the proposed workflow aids in the identification of key metabolites in the central metabolism that respond to monochromatic red-LED treatment and contribute to increase the fruit size of tomato plants. This study expands our understanding of systems-level responses mediated by low-, appropriate-, and high levels of red light irradiation in the fruit growth of tomato plants.
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Affiliation(s)
| | - Shoko Hikosaka
- Graduate School of Horticulture, Chiba University, Chiba, Japan
| | | | | | - Kazuki Saito
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
| | - Eiji Goto
- Graduate School of Horticulture, Chiba University, Chiba, Japan
| | - Miyako Kusano
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
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77
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Shammai A, Petreikov M, Yeselson Y, Faigenboim A, Moy-Komemi M, Cohen S, Cohen D, Besaulov E, Efrati A, Houminer N, Bar M, Ast T, Schuldiner M, Klemens PAW, Neuhaus E, Baxter CJ, Rickett D, Bonnet J, White R, Giovannoni JJ, Levin I, Schaffer A. Natural genetic variation for expression of a SWEET transporter among wild species of Solanum lycopersicum (tomato) determines the hexose composition of ripening tomato fruit. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 96:343-357. [PMID: 30044900 DOI: 10.1111/tpj.14035] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 06/19/2018] [Accepted: 06/26/2018] [Indexed: 05/22/2023]
Abstract
The sugar content of Solanum lycopersicum (tomato) fruit is a primary determinant of taste and quality. Cultivated tomato fruit are characterized by near-equimolar levels of the hexoses glucose and fructose, derived from the hydrolysis of translocated sucrose. As fructose is perceived as approximately twice as sweet as glucose, increasing its concentration at the expense of glucose can improve tomato fruit taste. Introgressions of the FgrH allele from the wild species Solanum habrochaites (LA1777) into cultivated tomato increased the fructose-to-glucose ratio of the ripe fruit by reducing glucose levels and concomitantly increasing fructose levels. In order to identify the function of the Fgr gene, we combined a fine-mapping strategy with RNAseq differential expression analysis of near-isogenic tomato lines. The results indicated that a SWEET protein was strongly upregulated in the lines with a high fructose-to-glucose ratio. Overexpressing the SWEET protein in transgenic tomato plants dramatically reduced the glucose levels and increased the fructose : glucose ratio in the developing fruit, thereby proving the function of the protein. The SWEET protein was localized to the plasma membrane and expression of the SlFgr gene in a yeast line lacking native hexose transporters complemented growth with glucose, but not with fructose. These results indicate that the SlFgr gene encodes a plasma membrane-localized glucose efflux transporter of the SWEET family, the overexpression of which reduces glucose levels and may allow for increased fructose levels. This article identifies the function of the tomato Fgr gene as a SWEET transporter, the upregulation of which leads to a modified sugar accumulation pattern in the fleshy fruit. The results point to the potential of the inedible wild species to improve fruit sugar accumulation via sugar transport mechanisms.
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Affiliation(s)
- Arik Shammai
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Marina Petreikov
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Yelena Yeselson
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Adi Faigenboim
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Michal Moy-Komemi
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Shahar Cohen
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Dvir Cohen
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Eduard Besaulov
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Ari Efrati
- Zeraim-Syngenta Seed Co., Gedera, Israel
| | | | - Moshe Bar
- Zeraim-Syngenta Seed Co., Gedera, Israel
| | - Tslil Ast
- Department of Molecular Genetics, Weizmann Institute, Rehovot, Israel
| | - Maya Schuldiner
- Department of Molecular Genetics, Weizmann Institute, Rehovot, Israel
| | - P A W Klemens
- Department of Plant Physiology, University of Kaiserslautern, Kaiserslautern, Germany
| | - Ekkehard Neuhaus
- Department of Plant Physiology, University of Kaiserslautern, Kaiserslautern, Germany
| | - Charles J Baxter
- Syngenta Seed Co., Jeallott's Hill Research Centre, Bracknell, UK
| | - Dan Rickett
- Syngenta Seed Co., Jeallott's Hill Research Centre, Bracknell, UK
| | - Julien Bonnet
- Syngenta Seed Co., Toulouse Innovation Center, Saint Sauveur, France
| | - Ruth White
- USDA-ARS and Boyce-Thompson Institute, Ithaca, NY, USA
| | | | - Ilan Levin
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Arthur Schaffer
- Institute of Plant Sciences Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
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Genetic diversity of strawberry germplasm using metabolomic biomarkers. Sci Rep 2018; 8:14386. [PMID: 30258188 PMCID: PMC6158285 DOI: 10.1038/s41598-018-32212-9] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Accepted: 08/23/2018] [Indexed: 12/22/2022] Open
Abstract
High-throughput metabolomics technologies can provide the quantification of metabolites levels across various biological processes in different tissues, organs and species, allowing the identification of genes underpinning these complex traits. Information about changes of metabolites during strawberry development and ripening processes is key to aiding the development of new approaches to improve fruit attributes. We used network-based methods and multivariate statistical approaches to characterize and investigate variation in the primary and secondary metabolism of seven domesticated and seven wild strawberry fruit accessions at three different fruit development and ripening stages. Our results demonstrated that Fragaria sub-species can be identified solely based on the gathered metabolic profiles. We also showed that domesticated accessions displayed highly similar metabolic changes due to shared domestication history. Differences between domesticated and wild accessions were detected at the level of metabolite associations which served to rank metabolites whose regulation was mostly altered in the process of domestication. The discovery of comprehensive metabolic variation among strawberry accessions offers opportunities to probe into the genetic basis of variation, providing insights into the pathways to relate metabolic variation with important traits.
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79
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McVey PA, Alexander LE, Fu X, Xie B, Galayda KJ, Nikolau BJ, Houk RS. Light-Dependent Changes in the Spatial Localization of Metabolites in Solenostemon scutellarioides (Coleus Henna) Visualized by Matrix-Free Atmospheric Pressure Electrospray Laser Desorption Ionization Mass Spectrometry Imaging. FRONTIERS IN PLANT SCIENCE 2018; 9:1348. [PMID: 30283472 PMCID: PMC6156358 DOI: 10.3389/fpls.2018.01348] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 08/27/2018] [Indexed: 05/05/2023]
Abstract
The visualization of foliage color in plants provides immediate insight into some of the compounds that exist in the leaf. However, many non-colored compounds are also present; their cellular distributions are not readily identifiable optically. In this study we evaluate the applicability of mass spectrometry imaging (MSI) via electrospray laser desorption ionization (ELDI) to reveal the spatial distribution of metabolites. ELDI-MSI is a matrix free, atmospheric pressure ionization method that utilizes a UV laser coupled with supplemental ionization by electrospray. We specifically applied ELDI-MSI to determine the spatial distribution of metabolites in Coleus Henna half leaves that were grown with half-sections either fully illuminated or shaded. We monitored dynamic changes in the spatial distribution of metabolites in response to the change of illumination every 7 days for a 28 day period. A novel source-sink relationship was observed between the 2 halves of the experimental leaf. Furthermore, Coleus Henna leaves present visually recognizable sectors associated with the differential accumulation of flavonoids. Thus, we correlated the effect of differential illumination and presence or absence of flavonoids with metabolic changes revealed by the accumulation of carbohydrates, amino acids, and organic acids. The results show the potential of ELDI-MSI to provide spatial information for a variety of plant metabolites with little sample preparation.
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Affiliation(s)
- Patrick A. McVey
- Department of Chemistry, Iowa State University, Ames, IA, United States
- Ames Laboratory-US DOE, Ames, IA, United States
| | - Liza E. Alexander
- Ames Laboratory-US DOE, Ames, IA, United States
- Center for Metabolic Biology, Iowa State University, Ames, IA, United States
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, United States
| | - Xinyu Fu
- Ames Laboratory-US DOE, Ames, IA, United States
- Center for Metabolic Biology, Iowa State University, Ames, IA, United States
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, United States
| | - Bo Xie
- Ames Laboratory-US DOE, Ames, IA, United States
| | - Katherine-Jo Galayda
- Department of Chemistry, Iowa State University, Ames, IA, United States
- Ames Laboratory-US DOE, Ames, IA, United States
| | - Basil J. Nikolau
- Ames Laboratory-US DOE, Ames, IA, United States
- Center for Metabolic Biology, Iowa State University, Ames, IA, United States
- Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, United States
| | - Robert S. Houk
- Department of Chemistry, Iowa State University, Ames, IA, United States
- Ames Laboratory-US DOE, Ames, IA, United States
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80
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Liang Y, Zhu Y, Dou M, Xu K, Chu RK, Chrisler WB, Zhao R, Hixson KK, Kelly RT. Spatially Resolved Proteome Profiling of <200 Cells from Tomato Fruit Pericarp by Integrating Laser-Capture Microdissection with Nanodroplet Sample Preparation. Anal Chem 2018; 90:11106-11114. [PMID: 30118597 DOI: 10.1021/acs.analchem.8b03005] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Due to sensitivity limitations, global proteome measurements generally require large amounts of biological starting material, which masks heterogeneity within the samples and differential protein expression among constituent cell types. Methods for spatially resolved proteomics are being developed to resolve protein expression for distinct cell types among highly heterogeneous tissues, but have primarily been applied to mammalian systems. Here we evaluate the performance of cell-type-specific proteome analysis of tomato fruit pericarp tissues by a platform integrating laser-capture microdissection (LCM) and a recently developed automated sample preparation system (nanoPOTS, nanodroplet processing in one pot for trace samples). Tomato fruits were cryosectioned prior to LCM and tissues were dissected and captured directly into nanoPOTS chips for processing. Following processing, samples were analyzed by nanoLC-MS/MS. Approximately 1900 unique peptides and 422 proteins were identified on average from ∼0.04 mm2 tissues comprising ∼8-15 parenchyma cells. Spatially resolved proteome analyses were performed using cells of outer epidermis, collenchyma, and parenchyma. Using ≤200 cells, a total of 1,870 protein groups were identified and the various tissues were easily resolved. The results provide spatial and tissue-specific insights into key enzymes and pathways involved in carbohydrate transport and source-sink relationships in tomato fruit. Of note, at the time of fruit ripening studied here, we identified differentially abundant proteins throughout the pericarp related to chlorophyll biogenesis, photosynthesis, and especially transport.
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Affiliation(s)
- Yiran Liang
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Ying Zhu
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Maowei Dou
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Kerui Xu
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Rosalie K Chu
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - William B Chrisler
- Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Rui Zhao
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Kim K Hixson
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States
| | - Ryan T Kelly
- Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.,Department of Chemistry and Biochemistry , Brigham Young University , Provo , Utah 84602 , United States
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81
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Moles TM, Mariotti L, De Pedro LF, Guglielminetti L, Picciarelli P, Scartazza A. Drought induced changes of leaf-to-root relationships in two tomato genotypes. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 128:24-31. [PMID: 29751252 DOI: 10.1016/j.plaphy.2018.05.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Revised: 04/23/2018] [Accepted: 05/04/2018] [Indexed: 05/14/2023]
Abstract
Water deficit triggers a dynamic and integrated cross-talk between leaves and roots. Tolerant plants have developed several physiological and molecular mechanisms to establish new cell metabolism homeostasis, avoiding and/or escaping from permanent impairments triggered by drought. Two tomato genotypes (a Southern Italy landrace called Ciettaicale and the well-known commercial cultivar Moneymaker) were investigated at vegetative stage to assess leaf and root metabolic strategies under 20 days of water deficit. Physiological and metabolic changes, in terms of ABA, IAA, proline, soluble sugars and phenols contents, occurred in both tomato genotypes under water stress. Overall, our results pointed out the higher plasticity of Ciettaicale to manage plant water status under drought in order to preserve the source-sink relationships. This aim was achieved by maintaining a more efficient leaf photosystem II (PSII) photochemistry, as suggested by chlorophyll fluorescence parameters, associated with a major investment towards root growth and activity to improve water uptake. On the contrary, the higher accumulation of carbon compounds, resulting from reduced PSII photochemistry and enhanced starch reserve mobilization, in leaves and roots of Moneymaker under drought could play a key role in the osmotic adjustment, although causing a feedback disruption of the source-sink relations. This hypothesis was also supported by the different drought-induced redox unbalance, as suggested by H2O2 and MDA contents. This could affect both PSII photochemistry and root activity, leading to a major involvement of NPQ and antioxidant system in response to drought in Moneymaker than Ciettaicale.
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Affiliation(s)
| | - Lorenzo Mariotti
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
| | | | - Lorenzo Guglielminetti
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy; Interdepartmental Research Center Nutrafood-Nutraceuticals and Food for Health, University of Pisa, Pisa, Italy.
| | - Piero Picciarelli
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy; Interdepartmental Research Center Nutrafood-Nutraceuticals and Food for Health, University of Pisa, Pisa, Italy
| | - Andrea Scartazza
- Institute of Agro-environmental and Forest Biology, National Research Council, Monterotondo Scalo, RM, Italy
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82
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Beauvoit B, Belouah I, Bertin N, Cakpo CB, Colombié S, Dai Z, Gautier H, Génard M, Moing A, Roch L, Vercambre G, Gibon Y. Putting primary metabolism into perspective to obtain better fruits. ANNALS OF BOTANY 2018; 122:1-21. [PMID: 29718072 PMCID: PMC6025238 DOI: 10.1093/aob/mcy057] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2017] [Accepted: 03/29/2017] [Indexed: 05/18/2023]
Abstract
Background One of the key goals of fruit biology is to understand the factors that influence fruit growth and quality, ultimately with a view to manipulating them for improvement of fruit traits. Scope Primary metabolism, which is not only essential for growth but is also a major component of fruit quality, is an obvious target for improvement. However, metabolism is a moving target that undergoes marked changes throughout fruit growth and ripening. Conclusions Agricultural practice and breeding have successfully improved fruit metabolic traits, but both face the complexity of the interplay between development, metabolism and the environment. Thus, more fundamental knowledge is needed to identify further strategies for the manipulation of fruit metabolism. Nearly two decades of post-genomics approaches involving transcriptomics, proteomics and/or metabolomics have generated a lot of information about the behaviour of fruit metabolic networks. Today, the emergence of modelling tools is providing the opportunity to turn this information into a mechanistic understanding of fruits, and ultimately to design better fruits. Since high-quality data are a key requirement in modelling, a range of must-have parameters and variables is proposed.
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Affiliation(s)
| | - Isma Belouah
- UMR 1332 BFP, INRA, Univ. Bordeaux, Villenave d’Ornon, France
| | | | | | - Sophie Colombié
- UMR 1332 BFP, INRA, Univ. Bordeaux, Villenave d’Ornon, France
| | - Zhanwu Dai
- UMR 1287 EGFV, INRA, Univ. Bordeaux, Bordeaux Sci Agro, F-Villenave d’Ornon, France
| | | | | | - Annick Moing
- UMR 1332 BFP, INRA, Univ. Bordeaux, Villenave d’Ornon, France
| | - Léa Roch
- UMR 1332 BFP, INRA, Univ. Bordeaux, Villenave d’Ornon, France
| | | | - Yves Gibon
- UMR 1332 BFP, INRA, Univ. Bordeaux, Villenave d’Ornon, France
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83
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84
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Lanoue J, Leonardos ED, Grodzinski B. Effects of Light Quality and Intensity on Diurnal Patterns and Rates of Photo-Assimilate Translocation and Transpiration in Tomato Leaves. FRONTIERS IN PLANT SCIENCE 2018; 9:756. [PMID: 29915612 PMCID: PMC5994434 DOI: 10.3389/fpls.2018.00756] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2018] [Accepted: 05/17/2018] [Indexed: 05/05/2023]
Abstract
Translocation of assimilates is a fundamental process involving carbon and water balance affecting source/sink relationships. Diurnal patterns of CO2 exchange, translocation (carbon export), and transpiration of an intact tomato source leaf were determined during 14CO2 steady-state labeling under different wavelengths at three pre-set photosynthetic rates. Daily patterns showed that photosynthesis and export were supported by all wavelengths of light tested including orange and green. Export in the light, under all wavelengths was always higher than that at night. Export in the light varied from 65-83% of the total daily carbon fixed, depending on light intensity. Photosynthesis and export were highly correlated under all wavelengths (r = 0.90-0.96). Export as a percentage of photosynthesis (relative export) decreased as photosynthesis increased by increasing light intensity under all wavelengths. These data indicate an upper limit for export under all spectral conditions. Interestingly, only at the medium photosynthetic rate, relative export under the blue and the orange light-emitting diodes (LEDs) were higher than under white and red-white LEDs. Stomatal conductance, transpiration rates, and water-use-efficiency showed similar daily patterns under all wavelengths. Illuminating tomato leaves with different spectral quality resulted in similar carbon export rates, but stomatal conductance and transpiration rates varied due to wavelength specific control of stomatal function. Thus, we caution that the link between transpiration and C-export may be more complex than previously thought. In summary, these data indicate that orange and green LEDs, not simply the traditionally used red and blue LEDs, should be considered and tested when designing lighting systems for optimizing source leaf strength during plant production in controlled environment systems. In addition, knowledge related to the interplay between water and C-movement within a plant and how they are affected by environmental stimuli, is needed to develop a better understanding of source/sink relationships.
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Affiliation(s)
- Jason Lanoue
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
- Harrow Research and Development Centre, Agriculture and Agri-Food Canada, Harrow, ON, Canada
| | | | - Bernard Grodzinski
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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85
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Petridis A, van der Kaay J, Chrysanthou E, McCallum S, Graham J, Hancock RD. Photosynthetic limitation as a factor influencing yield in highbush blueberries (Vaccinium corymbosum) grown in a northern European environment. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3069-3080. [PMID: 29590429 PMCID: PMC5972668 DOI: 10.1093/jxb/ery118] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 03/21/2018] [Indexed: 05/20/2023]
Abstract
Published evidence indicates that nearly 60% of blueberry-producing countries experience yield instability. Yield is a complex trait determined by genetic and environmental factors. Here, using physiological and biochemical approaches, we tested the hypothesis that yield instability results from year-to-year environmental variation that limits carbon assimilation, storage and partitioning. The data indicate that fruit development depends primarily on the daily production of non-structural carbohydrates by leaves, and there is no accumulation of a starch buffer to allow continuous ripening under conditions limiting for photosynthesis. Photosynthesis was saturated at moderate light irradiance and this was mainly due to stomatal and biochemical limitations. In a dynamic light environment, photosynthesis was further limited by slow stomatal response to increasing light. Finally, labelling with 13CO2 at specific stages of fruit development revealed a relatively even distribution of newly assimilated carbon between stems, roots and fruits, suggesting that the fruit is not a strong sink. We conclude that a significant component of yield variability results from limitations in photosynthetic efficiency that are compounded by an inability to accumulate starch reserves in blueberry storage tissues in a typical northern European environment. This work informs techniques for improving agronomic management and indicates key traits required for yield stability in such environments.
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Affiliation(s)
- Antonios Petridis
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Jeroen van der Kaay
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Elina Chrysanthou
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Susan McCallum
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Julie Graham
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Robert D Hancock
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK
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86
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Fruit sugar and organic acid were significantly related to fruit Mg of six citrus cultivars. Food Chem 2018; 259:278-285. [PMID: 29680055 DOI: 10.1016/j.foodchem.2018.03.102] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Revised: 03/17/2018] [Accepted: 03/22/2018] [Indexed: 11/20/2022]
Abstract
The fruit quality of 6 citrus cultivars growing in the same orchard was determined at ripening stage in both 2014 and 2015. We further measured the components of sugar (sucrose, fructose and glucose), organic acid (citric, malate and quinic acid), enzymes related to Glycolysis and Krebs cycle and mineral elements at 5 stages of fruit development in the second year. The results showed that at ripening stage of both years, 'Newhall' cultivar had higher TSS concentration and the TSS/TA ratio but lower TA concentration, while 'Flame' cultivar was exactly opposite. Sucrose and citric acid were the most accumulated compounds in fruit during the fruit development of 6 citrus cultivars. Fruit sucrose concentration increased from 9.26 mg·kg-1 at 60 DAFB to 50.92 mg·kg-1 at 180 DAFB, and the citric acid concentration increased from 1.41 mg·kg-1 at 60 DAFB to 29.87 mg·kg-1 at 90 DAFB or 29.02 mg·kg-1 at 120 DAFB then decreased till ripening (5.47 mg·kg-1). We found ACO was the key enzyme resulting in the difference of citric acid accumulation, but not quite clear in sucrose metabolism. The fruit mineral nutrient concentrations of 6 cultivars during the fruit development were 0.94-1.92% of N, 0.11-0.23% of P, 1.03-1.37% of K, 0.31-1.15% of Ca, 0.11-0.29% of Mg, 3.97-72.34 mg·Fe kg-1, 1.93-10.64 mg·Mn kg-1, 1.56-10.73 mg·Cu kg-1, and 0.90-16.80 mg·Zn kg-1. We also analyzed the relationship among each sugar, organic acid component and mineral nutrient in this study by curve estimation and PCA analysis. The results indicated that only Mg was significantly correlated with both sugar and organic acid component, negative and positive respectively. It suggested that the accumulation of sugar and organic acid might be related to the dynamic changes of fruit Mg concentrations of 6 citrus cultivars.
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87
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Yang F, Fan Y, Wu X, Cheng Y, Liu Q, Feng L, Chen J, Wang Z, Wang X, Yong T, Liu W, Liu J, Du J, Shu K, Yang W. Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning. FRONTIERS IN PLANT SCIENCE 2018; 9:56. [PMID: 29441084 PMCID: PMC5797538 DOI: 10.3389/fpls.2018.00056] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2017] [Accepted: 01/11/2018] [Indexed: 05/04/2023]
Abstract
The intensity and quality (red to far-red (R/Fr) ratio) of light directly affect growth of plant under shading. Gibberellins (GAs) and auxin [indole-3-acetic acid (IAA)] play important roles in mediating the shading adaptive responses of plants. Thus, the intensity and quality of the uncoupling light from shading were assessed to identify the influence of each component on the morphology and matter distribution of the leaf, stem, and petiole. This assessment was based on the changes in endogenous Gibberellin 1 (GA1) and IAA levels. Soybean plants were grown in a growth chamber with four treatments [normal (N), N+Fr, low (L), and L+Fr light]. Results revealed that the reductions in photosynthetically active radiation (PAR) and R/Fr ratio equally increased height and stem mass fractions (SMFs) of the soybean seedling. The light intensity significantly influenced the dry mass per unit area and mass fraction of soybean leaves, whereas the light quality regulated the petiole elongation and mass fraction. Low R/Fr ratio (high Fr light) increased the soybean biomass by improving the photosynthetic assimilation rate and quantum yield of photosystem II. In addition, the IAA and GA1 levels in the leaf, stem, and petiole did not reflect the growth response trends of each tissue toward light intensity and quality; however, trends of the IAA-to-GA1 content ratios were similar to those of the growth and matter allocation of each soybean tissue under different light environments. Therefore, the response of growth and matter allocation of soybean to light intensity and quality may be regulated by the IAA-to-GA1 content ratio in the tissues of the soybean plant.
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Affiliation(s)
- Feng Yang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Yuanfang Fan
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Xiaoling Wu
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Yajiao Cheng
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Qinlin Liu
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Lingyang Feng
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Junxu Chen
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Zhonglin Wang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Xiaochun Wang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Taiwen Yong
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Weiguo Liu
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Jiang Liu
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Junbo Du
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Kai Shu
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
| | - Wenyu Yang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
- Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, China
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88
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High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening. Nat Commun 2018; 9:364. [PMID: 29371663 PMCID: PMC5785480 DOI: 10.1038/s41467-017-02782-9] [Citation(s) in RCA: 190] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Accepted: 12/22/2017] [Indexed: 12/20/2022] Open
Abstract
Tomato (Solanum lycopersicum) is an established model for studying fruit biology; however, most studies of tomato fruit growth and ripening are based on homogenized pericarp, and do not consider the internal tissues, or the expression signatures of individual cell and tissue types. We present a spatiotemporally resolved transcriptome analysis of tomato fruit ontogeny, using laser microdissection (LM) or hand dissection coupled with RNA-Seq analysis. Regulatory and structural gene networks, including families of transcription factors and hormone synthesis and signaling pathways, are defined across tissue and developmental spectra. The ripening program is revealed as comprising gradients of gene expression, initiating in internal tissues then radiating outward, and basipetally along a latitudinal axis. We also identify spatial variations in the patterns of epigenetic control superimposed on ripening gradients. Functional studies elucidate previously masked regulatory phenomena and relationships, including those associated with fruit quality traits, such as texture, color, aroma, and metabolite profiles. Cell-type transcriptome profiling greatly elucidate organismal development. Here, the authors report a spatiotemporally resolved comprehensive transcriptome analysis of tomato fruit ontogeny and suggest a new model of fruit maturation which initiates in internal tissues then radiates outwards.
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Massaretto IL, Albaladejo I, Purgatto E, Flores FB, Plasencia F, Egea-Fernández JM, Bolarin MC, Egea I. Recovering Tomato Landraces to Simultaneously Improve Fruit Yield and Nutritional Quality Against Salt Stress. FRONTIERS IN PLANT SCIENCE 2018; 9:1778. [PMID: 30555505 PMCID: PMC6284034 DOI: 10.3389/fpls.2018.01778] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Accepted: 11/15/2018] [Indexed: 05/18/2023]
Abstract
Salt stress generally induces important negative effects on tomato (Solanum lycopersicum) productivity but it may also cause a positive effect improving fruit quality, one of the greatest challenges in nowadays agriculture. Because of the genetic erosion of this horticultural species, the recovery of locally adapted landraces could play a very important role in avoiding, at least partially, production losses and simultaneously improving fruit quality. Two tomato landraces endemic of the Spanish Southeast area, characterized by the harsh climatic conditions of the Mediterranean basin, have been selected: Negro Yeste (NY) characterized by its dark-red colored fruits and Verdal (V), which fruits did not achieve the characteristic red color at ripening. Here the agronomic, physiological, and metabolic responses of these landraces were compared with the reference tomato commercial cv. Moneymaker (MM), in plants grown without salt (control) and with salt stress (100 mM NaCl) for 70 days. The higher salt tolerance of both landraces was mainly reflected in the fruit number, as NY only reduced the fruit number in salt stress by 20% whereas in MM it was reduced till 43%, and in V the fruit number even showed an increase of 33% with salt stress. An important fruit quality parameter is soluble solids content, which increases induced by salinity were significantly higher in both landraces (60 and 78% in NY and V, respectively) compared with MM (34%). Although both landraces showed a similar response in relation to the high chlorophyll accumulation detected in their fruits, the fruit metabolic profiles were very different. Increased carotenoids levels were found in NY fruits, especially lycopene in ripe fruit, and this characteristic was observed in both control and salt stress. Contrarily, the carotenoid biosynthesis pathway was disrupted in V ripe fruits, but other metabolites, such as Ca2+, mannose, formate, and glutamate were accumulated. These results highlight the potential of tomato landraces to improve nutritional fruit quality and maintain fruit yield stability under salt stress.
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Affiliation(s)
- Isabel L. Massaretto
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CEBAS-CSIC, Murcia, Spain
- Department of Food Science and Experimental Nutrition, Faculty of Pharmaceutical Sciences, Food Research Center (FoRC-CEPID), University of São Paulo, São Paulo, Brazil
| | - Irene Albaladejo
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CEBAS-CSIC, Murcia, Spain
| | - Eduardo Purgatto
- Department of Food Science and Experimental Nutrition, Faculty of Pharmaceutical Sciences, Food Research Center (FoRC-CEPID), University of São Paulo, São Paulo, Brazil
| | - Francisco B. Flores
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CEBAS-CSIC, Murcia, Spain
| | - Félix Plasencia
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CEBAS-CSIC, Murcia, Spain
| | | | - Maria C. Bolarin
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CEBAS-CSIC, Murcia, Spain
| | - Isabel Egea
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CEBAS-CSIC, Murcia, Spain
- *Correspondence: Isabel Egea
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90
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Bianchetti RE, Cruz AB, Oliveira BS, Demarco D, Purgatto E, Peres LEP, Rossi M, Freschi L. Phytochromobilin deficiency impairs sugar metabolism through the regulation of cytokinin and auxin signaling in tomato fruits. Sci Rep 2017; 7:7822. [PMID: 28798491 PMCID: PMC5552807 DOI: 10.1038/s41598-017-08448-2] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Accepted: 07/10/2017] [Indexed: 12/22/2022] Open
Abstract
Phytochomes and plant hormones have been emerging as important regulators of fleshy fruit biology and quality traits; however, the relevance of phytochrome-hormonal signaling crosstalk in controlling fruit development and metabolism remains elusive. Here, we show that the deficiency in phytochrome chromophore phytochromobilin (PΦB) biosynthesis inhibits sugar accumulation in tomato (Solanum lycopersicum) fruits by transcriptionally downregulating sink- and starch biosynthesis-related enzymes, such as cell-wall invertases, sucrose transporters and ADP-glucose pyrophosphorylases. PΦB deficiency was also shown to repress fruit chloroplast biogenesis, which implicates more limited production of photoassimilates via fruit photosynthesis. Genetic and physiological data revealed the involvement of auxins and cytokinins in mediating the negative impact of PΦB deficiency on fruit sink strength and chloroplast formation. PΦB deficiency was shown to transcriptionally repress type-A TOMATO RESPONSE REGULATORs and AUXIN RESPONSE FACTORs both in pericarp and columella, suggesting active phytochrome-hormonal signaling crosstalk in these tissues. Data also revealed that PΦB deficiency influences fruit ripening by delaying the climacteric rise in ethylene production and signaling. Altogether, the data uncover the impact of phytochromobilin deficiency in fine-tuning sugar metabolism, chloroplast formation and the timing of fruit ripening and also reveal a link between auxins, cytokinins and phytochromes in regulating sugar import and accumulation in fruits.
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Affiliation(s)
- Ricardo Ernesto Bianchetti
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, 05508-900, São Paulo, Brazil
| | - Aline Bertinatto Cruz
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, 05508-900, São Paulo, Brazil
| | - Bruna Soares Oliveira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, 05508-900, São Paulo, Brazil
| | - Diego Demarco
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, 05508-900, São Paulo, Brazil
| | - Eduardo Purgatto
- Departamento de Alimentos e Nutrição Experimental, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, Av. Professor Lineu Prestes, 580, 05508-000, São Paulo, Brazil
| | - Lázaro Eustáquio Pereira Peres
- Departamento de Ciências Biológicas, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Av. Pádua Dias, 11, CP 09, 13418-900, Piracicaba, Brazil
| | - Magdalena Rossi
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, 05508-900, São Paulo, Brazil
| | - Luciano Freschi
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 277, 05508-900, São Paulo, Brazil.
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91
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Kumar R, Bohra A, Pandey AK, Pandey MK, Kumar A. Metabolomics for Plant Improvement: Status and Prospects. FRONTIERS IN PLANT SCIENCE 2017; 8:1302. [PMID: 28824660 PMCID: PMC5545584 DOI: 10.3389/fpls.2017.01302] [Citation(s) in RCA: 129] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Accepted: 07/11/2017] [Indexed: 05/12/2023]
Abstract
Post-genomics era has witnessed the development of cutting-edge technologies that have offered cost-efficient and high-throughput ways for molecular characterization of the function of a cell or organism. Large-scale metabolite profiling assays have allowed researchers to access the global data sets of metabolites and the corresponding metabolic pathways in an unprecedented way. Recent efforts in metabolomics have been directed to improve the quality along with a major focus on yield related traits. Importantly, an integration of metabolomics with other approaches such as quantitative genetics, transcriptomics and genetic modification has established its immense relevance to plant improvement. An effective combination of these modern approaches guides researchers to pinpoint the functional gene(s) and the characterization of massive metabolites, in order to prioritize the candidate genes for downstream analyses and ultimately, offering trait specific markers to improve commercially important traits. This in turn will improve the ability of a plant breeder by allowing him to make more informed decisions. Given this, the present review captures the significant leads gained in the past decade in the field of plant metabolomics accompanied by a brief discussion on the current contribution and the future scope of metabolomics to accelerate plant improvement.
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Affiliation(s)
- Rakesh Kumar
- Department of Plant Sciences, University of Hyderabad (UoH)Hyderabad, India
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)Hyderabad, India
| | - Abhishek Bohra
- Crop Improvement Division, Indian Institute of Pulses Research (IIPR)Kanpur, India
| | - Arun K. Pandey
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)Hyderabad, India
| | - Manish K. Pandey
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)Hyderabad, India
| | - Anirudh Kumar
- Department of Botany, Indira Gandhi National Tribal University (IGNTU)Amarkantak, India
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92
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Xu Y, Sechet J, Wu Y, Fu Y, Zhu L, Li J, Zhang Y, Gineau E, Gaertner C, Zhou J, Fan X, Liu Y, Zhou L, Mouille G, Lin X. Rice Sucrose Partitioning Mediated by a Putative Pectin Methyltransferase and Homogalacturonan Methylesterification. PLANT PHYSIOLOGY 2017; 174:1595-1608. [PMID: 28495893 PMCID: PMC5490883 DOI: 10.1104/pp.16.01555] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Accepted: 05/02/2017] [Indexed: 05/02/2023]
Abstract
Homogalacturonan (HG) is the main component of pectins. HG methylesterification has recently emerged as a key determinant controlling cell attachment, organ formation, and phyllotaxy. However, whether and how HG methylesterification affects intercellular metabolite transport has rarely been reported. Here, we identified and characterized knockout mutants of the rice (Oryza sativa) OsQUA2 gene encoding a putative pectin methyltransferase. Osqua2 mutants exhibit a remarkable decrease in the degree of methylesterification of HG in the culm-sieve element cell wall and a markedly reduced grain yield. The culm of Osqua2 mutant plants contains excessive sucrose (Suc), and a 13CO2 feeding experiment showed that the Suc overaccumulation in the culm was caused by blocked Suc translocation. These and other findings demonstrate that OsQUA2 is essential for maintaining a high degree of methylesterification of HG in the rice culm-sieve element cell wall, which may be critical for efficient Suc partitioning and grain filling. In addition, our results suggest that the apoplastic pathway is involved in long-distance Suc transport in rice. The identification and characterization of the OsQUA2 gene and its functionality revealed a previously unknown contribution of HG methylesterification and provided insight into how modification of the cell wall regulates intercellular transport in plants.
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Affiliation(s)
- Yonghan Xu
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China
- Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Agriculture and Food Science, Zhejiang Agriculture and Forest University, Hangzhou 311300, China
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forest University, Lin'an, Hangzhou 311300, China
- JJiangsu Collaborative Innovation Center for Modern Crop Production, College of Agronomy, Anhui Agricultural University, Hefei 230036, China
| | - Julien Sechet
- Institut Jean-Pierre Bourgin, Unité Mixte de Recherche 1318, Institut National de la Recherche Agronomique/AgroParisTech, ERL3559 Centre National de la Recherche Scientifique, Saclay Plant Sciences, 78026 Versailles, France
| | - Yingbao Wu
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
- Suzhou Academy of Agricultural Science, Suzhou 215155, China
| | - Yaping Fu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China
| | - Longfei Zhu
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forest University, Lin'an, Hangzhou 311300, China
| | - Jincai Li
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China
- JJiangsu Collaborative Innovation Center for Modern Crop Production, College of Agronomy, Anhui Agricultural University, Hefei 230036, China
| | - Yinping Zhang
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China
- JJiangsu Collaborative Innovation Center for Modern Crop Production, College of Agronomy, Anhui Agricultural University, Hefei 230036, China
| | - Emilie Gineau
- Institut Jean-Pierre Bourgin, Unité Mixte de Recherche 1318, Institut National de la Recherche Agronomique/AgroParisTech, ERL3559 Centre National de la Recherche Scientifique, Saclay Plant Sciences, 78026 Versailles, France
| | - Cyril Gaertner
- Institut Jean-Pierre Bourgin, Unité Mixte de Recherche 1318, Institut National de la Recherche Agronomique/AgroParisTech, ERL3559 Centre National de la Recherche Scientifique, Saclay Plant Sciences, 78026 Versailles, France
| | - Jian Zhou
- Center For Earth System Science, Tsinghua University, Beijing 100084, China
| | - Xiaorong Fan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Yu Liu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310029, China
| | - Li Zhou
- Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Agriculture and Food Science, Zhejiang Agriculture and Forest University, Hangzhou 311300, China
| | - Grégory Mouille
- Institut Jean-Pierre Bourgin, Unité Mixte de Recherche 1318, Institut National de la Recherche Agronomique/AgroParisTech, ERL3559 Centre National de la Recherche Scientifique, Saclay Plant Sciences, 78026 Versailles, France
| | - Xinchun Lin
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang Agriculture and Forest University, Lin'an, Hangzhou 311300, China
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93
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Thitisaksakul M, Arias MC, Dong S, Beckles DM. Overexpression of GSK3-like Kinase 5 (OsGSK5) in rice (Oryza sativa) enhances salinity tolerance in part via preferential carbon allocation to root starch. FUNCTIONAL PLANT BIOLOGY : FPB 2017; 44:705-719. [PMID: 32480600 DOI: 10.1071/fp16424] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Accepted: 04/01/2017] [Indexed: 05/26/2023]
Abstract
Rice (Oryza sativa L.) is very sensitive to soil salinity. To identify endogenous mechanisms that may help rice to better survive salt stress, we studied a rice GSK3-like isoform (OsGSK5), an orthologue of a Medicago GSK3 previously shown to enhance salinity tolerance in Arabidopsis by altering carbohydrate metabolism. We wanted to determine whether OsGSK5 functions similarly in rice. OsGSK5 was cloned and sequence, expression, evolutionary and functional analyses were conducted. OsGSK5 was expressed highest in rice seedling roots and was both salt and sugar starvation inducible in this tissue. A short-term salt-shock (150mM) activated OsGSK5, whereas moderate (50mM) salinity over the same period repressed the transcript. OsGSK5 response to salinity was due to an ionic effect since it was unaffected by polyethylene glycol. We engineered a rice line with 3.5-fold higher OsGSK5 transcript, which better tolerated cultivation on saline soils (EC=8 and 10dSm-2). This line produced more panicles and leaves, and a higher shoot biomass under high salt stress than the control genotypes. Whole-plant 14C-tracing and correlative analysis of OsGSK5 transcript with eco-physiological assessments pointed to the accelerated allocation of carbon to the root and its deposition as starch, as part of the tolerance mechanism.
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Affiliation(s)
- Maysaya Thitisaksakul
- Department of Plant Sciences, University of California, One Shields Avenue, Davis, CA 95616, USA
| | - Maria C Arias
- Unité de Glycobiologie Structurale et Fonctionnelle, Université des Sciences et Technologies de Lille, Unité Mixte de Recherche du Centre National de la Recherche Scientifique no. 8576, 59655 Villeneuve D'Ascq cedex, France
| | - Shaoyun Dong
- Department of Plant Sciences, University of California, One Shields Avenue, Davis, CA 95616, USA
| | - Diane M Beckles
- Department of Plant Sciences, University of California, One Shields Avenue, Davis, CA 95616, USA
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94
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Constantinescu D, Memmah MM, Vercambre G, Génard M, Baldazzi V, Causse M, Albert E, Brunel B, Valsesia P, Bertin N. Model-Assisted Estimation of the Genetic Variability in Physiological Parameters Related to Tomato Fruit Growth under Contrasted Water Conditions. FRONTIERS IN PLANT SCIENCE 2016; 7:1841. [PMID: 28018381 PMCID: PMC5145867 DOI: 10.3389/fpls.2016.01841] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Accepted: 11/22/2016] [Indexed: 05/25/2023]
Abstract
Drought stress is a major abiotic stress threatening plant and crop productivity. In case of fleshy fruits, understanding mechanisms governing water and carbon accumulations and identifying genes, QTLs and phenotypes, that will enable trade-offs between fruit growth and quality under Water Deficit (WD) condition is a crucial challenge for breeders and growers. In the present work, 117 recombinant inbred lines of a population of Solanum lycopersicum were phenotyped under control and WD conditions. Plant water status, fruit growth and composition were measured and data were used to calibrate a process-based model describing water and carbon fluxes in a growing fruit as a function of plant and environment. Eight genotype-dependent model parameters were estimated using a multiobjective evolutionary algorithm in order to minimize the prediction errors of fruit dry and fresh mass throughout fruit development. WD increased the fruit dry matter content (up to 85%) and decreased its fresh weight (up to 60%), big fruit size genotypes being the most sensitive. The mean normalized root mean squared errors of the predictions ranged between 16-18% in the population. Variability in model genotypic parameters allowed us to explore diverse genetic strategies in response to WD. An interesting group of genotypes could be discriminated in which (i) the low loss of fresh mass under WD was associated with high active uptake of sugars and low value of the maximum cell wall extensibility, and (ii) the high dry matter content in control treatment (C) was associated with a slow decrease of mass flow. Using 501 SNP markers genotyped across the genome, a QTL analysis of model parameters allowed to detect three main QTLs related to xylem and phloem conductivities, on chromosomes 2, 4, and 8. The model was then applied to design ideotypes with high dry matter content in C condition and low fresh mass loss in WD condition. The ideotypes outperformed the RILs especially for large and medium fruit-size genotypes, by combining high pedicel conductance and high active uptake of sugars. Interestingly, five small fruit-size RILs were close to the selected ideotypes, and likely bear interesting traits and alleles for adaptation to WD.
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Affiliation(s)
- Dario Constantinescu
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Mohamed-Mahmoud Memmah
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Gilles Vercambre
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Michel Génard
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Valentina Baldazzi
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Mathilde Causse
- Unité Génétique et Amélioration des Fruits et Légumes, Institut National de la Recherche Agronomique – Centre PACAMontfavet, France
| | - Elise Albert
- Unité Génétique et Amélioration des Fruits et Légumes, Institut National de la Recherche Agronomique – Centre PACAMontfavet, France
| | - Béatrice Brunel
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Pierre Valsesia
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
| | - Nadia Bertin
- Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique - Centre PACAAvignon, France
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95
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Albert E, Segura V, Gricourt J, Bonnefoi J, Derivot L, Causse M. Association mapping reveals the genetic architecture of tomato response to water deficit: focus on major fruit quality traits. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:6413-6430. [PMID: 27856709 PMCID: PMC5181584 DOI: 10.1093/jxb/erw411] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Water scarcity constitutes a crucial constraint for agriculture productivity. High-throughput approaches in model plant species identified hundreds of genes potentially involved in survival under drought, but few having beneficial effects on quality and yield. Nonetheless, controlled water deficit may improve fruit quality through higher concentration of flavor compounds. The underlying genetic determinants are still poorly known. In this study, we phenotyped 141 highly diverse small fruit tomato accessions for 27 traits under two contrasting watering conditions. A subset of 55 accessions exhibited increased metabolite contents and maintained yield under water deficit. Using 6100 single nucleotide polymorphisms (SNPs), association mapping revealed 31, 41, and 44 quantitative trait loci (QTLs) under drought, control, and both conditions, respectively. Twenty-five additional QTLs were interactive between conditions, emphasizing the interest in accounting for QTLs by watering regime interactions in fruit quality improvement. Combining our results with the loci previously identified in a biparental progeny resulted in 11 common QTLs and contributed to a first detailed characterization of the genetic determinants of response to water deficit in tomato. Major QTLs for fruit quality traits were dissected and candidate genes were proposed using expression and polymorphism data. The outcomes provide a basis for fruit quality improvement under deficit irrigation while limiting yield losses.
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Affiliation(s)
- Elise Albert
- INRA, UR1052, Génétique et Amélioration des Fruits et Légumes, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, Montfavet, 84143, France
| | - Vincent Segura
- INRA, UR0588, Amélioration, Génétique et Physiologie Forestières, 2163 Avenue de la Pomme de Pin, Centre de Recherche Val de Loire, CS 40001, Orléans, 45075, France
| | - Justine Gricourt
- INRA, UR1052, Génétique et Amélioration des Fruits et Légumes, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, Montfavet, 84143, France
| | | | | | - Mathilde Causse
- INRA, UR1052, Génétique et Amélioration des Fruits et Légumes, 67 Allée des Chênes, Centre de Recherche PACA, Domaine Saint Maurice, CS60094, Montfavet, 84143, France
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96
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Dai Z, Wu H, Baldazzi V, van Leeuwen C, Bertin N, Gautier H, Wu B, Duchêne E, Gomès E, Delrot S, Lescourret F, Génard M. Inter-Species Comparative Analysis of Components of Soluble Sugar Concentration in Fleshy Fruits. FRONTIERS IN PLANT SCIENCE 2016; 7:649. [PMID: 27242850 PMCID: PMC4872523 DOI: 10.3389/fpls.2016.00649] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Accepted: 04/28/2016] [Indexed: 05/03/2023]
Abstract
The soluble sugar concentration of fleshy fruit is a key determinant of fleshy fruit quality. It affects directly the sweetness of fresh fruits and indirectly the properties of processed products (e.g., alcohol content in wine). Despite considerable divergence among species, soluble sugar accumulation in a fruit results from the complex interplay of three main processes, namely sugar import, sugar metabolism, and water dilution. Therefore, inter-species comparison would help to identify common and/or species-specific modes of regulation in sugar accumulation. For this purpose, a process-based mathematical framework was used to compare soluble sugar accumulation in three fruits: grape, tomato, and peach. Representative datasets covering the time course of sugar accumulation during fruit development were collected. They encompassed 104 combinations of species (3), genotypes (30), and growing conditions (19 years and 16 nutrient and environmental treatments). At maturity, grape showed the highest soluble sugar concentrations (16.5-26.3 g/100 g FW), followed by peach (2.2 to 20 g/100 g FW) and tomato (1.4 to 5 g/100 g FW). Main processes determining soluble sugar concentration were decomposed into sugar importation, metabolism, and water dilution with the process-based analysis. Different regulation modes of soluble sugar concentration were then identified, showing either import-based, dilution-based, or import and dilution dual-based. Firstly, the higher soluble sugar concentration in grape than in tomato is a result of higher sugar importation. Secondly, the higher soluble sugar concentration in grape than in peach is due to a lower water dilution. The third mode of regulation is more complicated than the first two, with differences both in sugar importation and water dilution (grape vs. cherry tomato; cherry tomato vs. peach; peach vs. tomato). On the other hand, carbon utilization for synthesis of non-soluble sugar compounds (namely metabolism) was conserved among the three fruit species. These distinct modes appear to be quite species-specific, but the intensity of the effect may significantly vary depending on the genotype and management practices. These results provide novel insights into the drivers of differences in soluble sugar concentration among fleshy fruits.
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Affiliation(s)
- Zhanwu Dai
- EGFV, Bordeaux Sciences Agro, INRA, Université de BordeauxVillenave d’Ornon, France
| | - Huan Wu
- EGFV, Bordeaux Sciences Agro, INRA, Université de BordeauxVillenave d’Ornon, France
| | | | | | - Nadia Bertin
- INRA, UR1115, Plantes et Systèmes de Culture HorticolesAvignon, France
| | - Hélène Gautier
- INRA, UR1115, Plantes et Systèmes de Culture HorticolesAvignon, France
| | - Benhong Wu
- Institute of Botany – Chinese Academy of SciencesBeijing, China
| | | | - Eric Gomès
- EGFV, Bordeaux Sciences Agro, INRA, Université de BordeauxVillenave d’Ornon, France
| | - Serge Delrot
- EGFV, Bordeaux Sciences Agro, INRA, Université de BordeauxVillenave d’Ornon, France
| | | | - Michel Génard
- INRA, UR1115, Plantes et Systèmes de Culture HorticolesAvignon, France
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97
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Sagor GHM, Berberich T, Tanaka S, Nishiyama M, Kanayama Y, Kojima S, Muramoto K, Kusano T. A novel strategy to produce sweeter tomato fruits with high sugar contents by fruit-specific expression of a single bZIP transcription factor gene. PLANT BIOTECHNOLOGY JOURNAL 2016; 14:1116-26. [PMID: 26402509 DOI: 10.1111/pbi.12480] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Revised: 07/27/2015] [Accepted: 08/26/2015] [Indexed: 05/19/2023]
Abstract
Enhancement of sugar content and sweetness is desirable in some vegetables and in almost all fruits; however, biotechnological methods to increase sugar content are limited. Here, a completely novel methodological approach is presented that produces sweeter tomato fruits but does not have any negative effects on plant growth. Sucrose-induced repression of translation (SIRT), which is mediated by upstream open reading frames (uORFs), was initially reported in Arabidopsis AtbZIP11, a class S basic region leucine zipper (bZIP) transcription factor gene. Here, two AtbZIP11 orthologous genes, SlbZIP1 and SlbZIP2, were identified in tomato (Solanum lycopersicum). SlbZIP1 and SlbZIP2 contained four and three uORFs, respectively, in the cDNA 5'-leader regions. The second uORFs from the 5' cDNA end were conserved and involved in SIRT. Tomato plants were transformed with binary vectors in which only the main open reading frames (ORFs) of SlbZIP1 and SlbZIP2, without the SIRT-responsive uORFs, were placed under the control of the fruit-specific E8 promoter. Growth and morphology of the resulting transgenic tomato plants were comparable to those of wild-type plants. Transgenic fruits were approximately 1.5-fold higher in sugar content (sucrose/glucose/fructose) than nontransgenic tomato fruits. In addition, the levels of several amino acids, such as asparagine and glutamine, were higher in transgenic fruits than in wild-type fruits. This was expected because SlbZIP transactivates the asparagine synthase and proline dehydrogenase genes. This 'sweetening' technology is broadly applicable to other plants that utilize sucrose as a major translocation sugar.
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Affiliation(s)
- G H M Sagor
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
| | - Thomas Berberich
- Laboratory Center, Biodiversity and Climate Research Center, Frankfurt am Main, Germany
| | - Shun Tanaka
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
| | - Manabu Nishiyama
- Graduate School of Agricultural Science, Tohoku University, Aoba, Sendai, Japan
| | - Yoshinori Kanayama
- Graduate School of Agricultural Science, Tohoku University, Aoba, Sendai, Japan
| | - Seiji Kojima
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Aoba, Sendai, Japan
| | - Koji Muramoto
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
| | - Tomonobu Kusano
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
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98
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Wang L, Ruan YL. Shoot-root carbon allocation, sugar signalling and their coupling with nitrogen uptake and assimilation. FUNCTIONAL PLANT BIOLOGY : FPB 2016; 43:105-113. [PMID: 32480445 DOI: 10.1071/fp15249] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2015] [Accepted: 10/24/2015] [Indexed: 05/10/2023]
Abstract
Roots and shoots are distantly located but functionally interdependent. The growth and development of these two organ systems compete for energy and nutrient resource, and yet, they keep a dynamic balance with each other for growth and development. The success of such a relationship depends on efficient root-shoot communication. Aside from the well-known signalling processes mediated by hormones such as auxin and cytokinin, sugars have recently been shown to act as a rapid signal to co-ordinate root and shoot development in response to endogenous and exogenous clues, in parallel to their function as carbon and energy resources for biomass production. New findings from studies on vascular fluids have provided molecular insights into the role of sugars in long-distance communications between shoot and root. In this review, we discussed phloem- and xylem- translocation of sugars and the impacts of sugar allocation and signalling on balancing root-shoot development. Also, we have taken the shoot-root carbon-nitrogen allocation as an example to illustrate the communication between the two organs through multi-layer root-shoot-root signalling circuits, comprising sugar, nitrogen, cytokinin, auxin and vascular small peptide signals.
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Affiliation(s)
- Lu Wang
- School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW 2308, Australia
| | - Yong-Ling Ruan
- School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW 2308, Australia
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99
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Cirilli M, Bassi D, Ciacciulli A. Sugars in peach fruit: a breeding perspective. HORTICULTURE RESEARCH 2016; 3:15067. [PMID: 26816618 PMCID: PMC4720000 DOI: 10.1038/hortres.2015.67] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2015] [Revised: 12/10/2015] [Accepted: 12/10/2015] [Indexed: 05/23/2023]
Abstract
The last decade has been characterized by a decrease in peach (Prunus persica) fruit consumption in many countries, foremost due to unsatisfactory quality. The sugar content is one of the most important quality traits perceived by consumers, and the development of novel peach cultivars with sugar-enhanced content is a primary objective of breeding programs to revert the market inertia. Nevertheless, the progress reachable through classical phenotypic selection is limited by the narrow genetic bases of peach breeding material and by the complex quantitative nature of the trait, which is deeply affected by environmental conditions and agronomical management. The development of molecular markers applicable in MAS or MAB has become an essential strategy to boost the selection efficiency. Despite the enormous advances in 'omics' sciences, providing powerful tools for plant genotyping, the identification of the genetic bases of sugar-related traits is hindered by the lack of adequate phenotyping methods that are able to address strong within-plant variability. This review provides an overview of the current knowledge of the metabolic pathways and physiological mechanisms regulating sugar accumulation in peach fruit, the main advances in phenotyping approaches and genetic background, and finally addressing new research priorities and prospective for breeders.
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Affiliation(s)
- Marco Cirilli
- Department of Agricultural and Environmental Sciences (DISAA), University of Milan, via Celoria 2, 20133 Milan, Italy
| | - Daniele Bassi
- Department of Agricultural and Environmental Sciences (DISAA), University of Milan, via Celoria 2, 20133 Milan, Italy
| | - Angelo Ciacciulli
- Department of Agricultural and Environmental Sciences (DISAA), University of Milan, via Celoria 2, 20133 Milan, Italy
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100
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Ripoll J, Urban L, Brunel B, Bertin N. Water deficit effects on tomato quality depend on fruit developmental stage and genotype. JOURNAL OF PLANT PHYSIOLOGY 2016; 190:26-35. [PMID: 26629612 DOI: 10.1016/j.jplph.2015.10.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Revised: 10/19/2015] [Accepted: 10/20/2015] [Indexed: 05/23/2023]
Abstract
Many studies have advocated that water deficit (WD) may exert beneficial effects on fruit quality. However, the fruit response to WD at specific developmental stages was seldom investigated, although different mechanisms could be involved at each stage and lead to different effects on final fruit quality. In the present study, a moderate WD (-60% of water supply compared to control) was applied during each of the three major phases of fruit development, namely cell division (CD), cell expansion (CE) and maturation (MT). Two cocktail tomato (Solanum lycopersicum L.) genotypes were studied, one producing poor quality fruits (LA1420), and the other one producing tasty fruits (PlovdivXXIVa named Plovdiv). Contrasted responses were observed between the two genotypes. For both of them, fruit fresh mass and size were not significantly reduced by WD, whatever the developmental phase affected. Osmotic regulations were likely involved in the CD treatment for LA1420 fruits, which accumulated more sugars (both on a dry and fresh matter basis) and less acids (on a dry matter basis). In the CE treatment, other adaptive strategies involving sugar metabolism and sub-cellular compartmentation were suggested. In contrast, the composition of Plovdiv fruits changed only under the MT treatment, with less sugars, acids and carotenoids compared to control fruits (both on a dry and fresh matter basis). Total ascorbic acid (AsA) was not significantly influenced by treatments in both genotypes. On their whole, results suggest that, depending on genotypes, fruits are sweeter and less acidic under WD, but that the nutritive value related to vitamin and carotenoid contents may be lessened. The sensitivity of each developmental phase highly depends on the genotype. All phases were sensitive to WD for LA1420, but only the ripening phase for Plovdiv. Interestingly, major changes in fruit composition were observed in LA1420 which presents poor fruit quality under control conditions. This suggests the onset of fast adaptive response to WD at the fruit level in this genotype.
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Affiliation(s)
- Julie Ripoll
- INRA-Centre d'Avignon, UR1115 Plantes et Systèmes de Culture Horticoles, Domain Saint Paul-Site Agroparc, 228 route de l'aérodrome, CS 40509, 84 914 Avignon, Cedex 9, France; Université d'Avignon et des Pays du Vaucluse-Laboratoire de Physiologie des Fruits et Légumes EA4279, Bât. Agrosciences, 301 rue Baruch de Spinoza, B.P. 21239, 84916 Avignon, Cedex 9, France.
| | - Laurent Urban
- Université d'Avignon et des Pays du Vaucluse-Laboratoire de Physiologie des Fruits et Légumes EA4279, Bât. Agrosciences, 301 rue Baruch de Spinoza, B.P. 21239, 84916 Avignon, Cedex 9, France.
| | - Béatrice Brunel
- INRA-Centre d'Avignon, UR1115 Plantes et Systèmes de Culture Horticoles, Domain Saint Paul-Site Agroparc, 228 route de l'aérodrome, CS 40509, 84 914 Avignon, Cedex 9, France.
| | - Nadia Bertin
- INRA-Centre d'Avignon, UR1115 Plantes et Systèmes de Culture Horticoles, Domain Saint Paul-Site Agroparc, 228 route de l'aérodrome, CS 40509, 84 914 Avignon, Cedex 9, France.
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