On the relation between the Kautsky effect (chlorophyll a fluorescence induction) and Photosystem II: basics and applications of the OJIP fluorescence transient

Genetic and Physiological Dissection of Photosynthesis in Barley Exposed to Drought Stress

Balanced photosynthesis under drought is essential for better survival and for agricultural benefits in terms of biomass and yield. Given the current attempts to improve the photosynthetic efficiency for greater crop yield, the explanation of the genetic basis of that process, together with the phenotypic analysis, is significant in terms of both basic studies and potential agricultural application. Therefore, the main objective of this study was to uncover the molecular basis of the photosynthesis process under drought stress in barley. To address that goal, we conducted transcriptomic examination together with detailed photosynthesis analysis using the JIP-test. Using this approach, we indicated that photosynthesis is a process that is very early affected in barley seedlings treated with severe drought stress. Rather than focusing on individual genes, our strategy was pointed to the identification of groups of genes with similar expression patterns. As such, we identified and annotated almost 150 barley genes as crucial core-components of photosystems, electron transport components, and Calvin cycle enzymes. Moreover, we designated 17 possible regulatory interactions between photosynthesis-related genes and transcription factors in barley. Summarizing, our results provide a list of candidate genes for future genetic research and improvement of barley drought tolerance by targeting photosynthesis.

Slow induction of chlorophyll a fluorescence excited by blue and red light in Tradescantia leaves acclimated to high and low light

Tradescantia is a good model for assaying induction events in higher plant leaves. Chlorophyll (Chl) fluorescence serves as a sensitive reporter of the functional state of photosynthetic apparatus in chloroplasts. The fluorescence time-course depends on the leaf growth conditions and actinic light quality. In this work, we investigated slow induction of Chl a fluorescence (SIF) excited by blue light (BL, λ_max = 455 nm) or red light (RL, λ_max = 630 nm) in dark-adapted leaves of Tradescantia fluminensis acclimated to high light (~ 1000 µmol photons m^-2 s^-1; HL) or low light (~ 100 µmol photons m^-2 s^-1; LL). Our special interest was focused on the contribution of the avoidance response to SIF kinetics. Bearing in mind that BL and RL have different impacts on photoreceptors that initiate chloroplast movements within the cell (accumulation/avoidance responses), we have compared the SIF patterns during the action of BL and RL. The time-courses of SIF and kinetics of non-photochemical quenching (NPQ) of Chl a fluorescence revealed a certain difference when leaves were illuminated by BL or RL. In both cases, the yield of fluorescence rose to the maximal level P and then, after the lag-phase P-S-M₁, the fluorescence level decreased toward the steady state T (via the intermediate phases M₁-M₂ and M₂-T). In LL-acclimated leaves, the duration of the P-S-M₁ phase was almost two times longer that in HL-grown plants. In the case of BL, the fluorescence decay included the transient phase M₁-M₂. This phase was obscure during the RL illumination. Non-photochemical quenching of Chl a fluorescence has been quantified as [Formula: see text], where [Formula: see text] and [Formula: see text] stand for the fluorescence response to saturating pulses of light applied to dark-adapted and illuminated samples, respectively. The time-courses of such a formally determined NPQ value were markedly different during the action of RL and BL. In LL-grown leaves, BL induced higher NPQ as compared to the action of RL. In HL-grown plants, the difference between the NPQ responses to BL and RL illumination was insignificant. Comparing the peculiarities of Chl a fluorescence induced by BL and RL, we conclude that the avoidance response can provide a marked contribution to SIF and NPQ generation. The dependence of NPQ on the quality of actinic light suggests that chloroplast movements within the cell have a noticeable impact on the formally determined NPQ value. Analyzing kinetics of post-illumination decay of NPQ in the context of solar stress resistance, we have found that LL-acclimated Tradescantia leaves are more vulnerable to strong light than the HL-grown leaves.

A guide to Open-JIP, a low-cost open-source chlorophyll fluorometer

Chlorophyll a fluorescence is the most widely used method to study photosynthesis and plant stress. While several commercial fluorometers are available, there is a need for a low-cost and highly customisable chlorophyll fluorometer. Such a device would aid in performing high-throughput assessment of photosynthesis, as these instruments can be mass-produced. Novel investigations into photosynthesis can also be performed as a result of the user's ability to modify the devices functionality for their specific needs. Motivated by this, we present an open-source chlorophyll fluorometer based on the Kautsky induction curve (OJIP). The instrument consists of low-cost, easy-to-acquire electrical components and an open-source microcontroller (Arduino Mega) whose performance is equivalent to that of commercial instruments. Two 3D printable Open-JIP configurations are presented, one for higher plants and the other for microalgae cells in suspension. Directions for its construction are presented and the instrument is benchmarked against widely used commercial chlorophyll fluorometers.

Interactions between decabromodiphenyl ether and lead in soil-plant system

Pot experiments were conducted under abiotic conditions to investigate the interactive influence of decabromodiphenyl ether (BDE-209) and lead (Pb) on the seed germination, germ length, root exudation and physiological characteristics of tall fescue (Festuca arundinaceae), and the uptake, accumulation of Pb and BDE-209 in the plant tissues. Results show that seed germination and germ length were impacted by Pb but less influenced by BDE-209. BDE-209 spiking (10 and 50 mg/L) could alleviate the toxicity of high Pb concentration on seed germination and growth. The chlorophyll content was significantly increased at 500 mg/kg Pb but declined at 2000 mg/kg Pb. Low-level Pb contamination (500 mg/kg) activated antioxidase activity; however, 2000 mg/kg Pb significantly reduced the antioxidase activity. Plant biomass slightly decreased at 500 mg/kg Pb but significantly declined at 2000 mg/kg Pb. The addition of a moderate dosage of BDE-209 (10-50 mg/kg) lessened Pb phytotoxicity, leading to improved plant growth relative to the case of Pb spiking alone. The exudate secretion was significantly enhanced by Pb addition, but BDE-209 spiking only caused slightly increased secretion. Pb could interfere with BDE-209 adsorption and translocation of tall fescue by affecting physiological behavior of the plant, but BDE-209 exhibited little influence on the Pb fate in the plant. Overall, BDE-209 had slight interference on the impact of Pb towards tall fescue. The results demonstrate the complex interactive effects of organic pollutants and heavy metals in the soil-plant system.

Chromium effects on photosynthetic electron transport in pea (Pisum sativum L.)

MAIN CONCLUSION

Components of the photosynthetic electron transport chain in pea (Pisum sativum L.) leaves under in vivo conditions showed the following sensitivity to the inhibitory action of chromium(VI): intersystem electron transport > photosystem I > photosystem II. Inhibitory effects of chromium (VI) (K2Cr2O7, Cr) on the light reactions of photosynthesis were studied in vivo in Pisum sativum L. by using Multi-function Plant Efficiency Analyser (M-PEA-2). Photosynthetic parameters related to photosystem (PS) II, PSI and intersystem electron carriers were calculated from the light-induced kinetics of prompt chlorophyll a fluorescence (OJIP transient), delayed chlorophyll a fluorescence (DF), and 820 nm modulated reflection (MR). We showed that the I2 step of DF induction is sensitive to inhibition of the Q0 site of the cytochrome b6f complex. Such parameters as δRo of the JIP test related to the functional state of photosynthetic reactions beyond the PQ pool, Vred of the MR induction assigned to the overall rate of P700+ and plastocyanin reduction, and I2 step of the DF induction were significantly altered in the presence of low-dose Cr(VI). Moderate doses of Cr affected mainly PSI-related parameters including Vox and ΔMR parameters of the MR induction, whereas high-dose treatment influenced JIP test parameters φPo(= FV/FM) and ψEo related to PSII. The obtained results showed that the earliest Cr(VI) effect on the photosynthetic electron transport chain manifests itself by inhibition of the intersystem electron transport, rather, at the level of the cytochrome b6f complex. Inhibitory effects of Cr on PSI were more pronounced than those on PSII. Sensitivity of the used kinetic parameters toward the functional state of photosynthetic reactions makes this approach suitable for early diagnostics of toxic action of pollutants on plants.

Comparative Proteomics Reveals Cold Acclimation Machinery Through Enhanced Carbohydrate and Amino Acid Metabolism in Wucai (Brassica Campestris L.)

Limited information is available on the cold acclimation of non-heading Chinese cabbage (NHCC) under low temperatures. In this study, the isobaric tags for relative and absolute quantification (iTRAQ) were used to illustrate the molecular machinery of cold acclimation. Compared to the control (Cont), altogether, 89 differentially expressed proteins (DEPs) were identified in wucai leaves responding to low temperatures (LT). Among these proteins, 35 proteins were up-regulated ((and 54 were down-regulated). These differentially expressed proteins were categorized as having roles in carbohydrate metabolism, photosynthesis and energy metabolism, oxidative defense, amino acid metabolism, metabolic progress, cold regulation, methylation progress, and signal transduction. The fructose, glucose, and sucrose were dramatically increased in response to cold acclimation. It was firstly reported that aspartate, serine, glutamate, proline, and threonine were significantly accumulated under low temperatures. Results of quantitative real-time PCR analysis of nine DEPs displayed that the transcriptional expression patterns of six genes were consistent with their protein expression abundance. Our results demonstrated that wucai acclimated to low temperatures through regulating the expression of several crucial proteins. Additionally, carbohydrate and amino acid conversion played indispensable and vital roles in improving cold assimilation in wucai.

CO2 uptake and chlorophyll a fluorescence of Suaeda fruticosa grown under diurnal rhythm and after transfer to continuous dark

Although only 2-4% of absorbed light is emitted as chlorophyll (Chl) a fluorescence, its measurement provides valuable information on photosynthesis of the plant, particularly of Photosystem II (PSII) and Photosystem I (PSI). In this paper, we have examined photosynthetic parameters of Suaeda fruticosa L. (family: Amaranthaceae), surviving under extreme xerohalophytic conditions, as influenced by diurnal rhythm or continuous dark condition. We report here CO₂ gas exchange and the kinetics of Chl a fluorescence of S. fruticosa, made every 3 hours (hrs) for 3 days, using a portable infra-red gas analyzer and a Handy PEA fluorimeter. Our measurements on CO₂ gas exchange show the maximum rate of photosynthesis to be at 08:00 hrs under diurnal condition and at 05:00 hrs under continuous dark. From the OJIP phase of Chl a fluorescence transient, we have inferred that the maximum quantum yield of PSII photochemistry must have increased during the night under diurnal rhythm, and between 11:00 and 17:00 hrs under constant dark. Overall, our study has revealed novel insights into how photosynthetic reactions are affected by the photoperiodic cycles in S. fruticosa under high salinity. This study has further revealed a unique strategy operating in this xero-halophyte where the repair mechanism for damaged PSII operates during the dark, which, we suggest, contributes to its ecological adaptation and ability to survive and reproduce under extreme saline, high light, and drought conditions. We expect these investigations to help in identifying key genes and pathways for raising crops for saline and dry areas.

The regulation of P700 is an important photoprotective mechanism to NaCl-salinity in Jatropha curcas

Salinity commonly affects photosynthesis and crop production worldwide. Salt stress disrupts the fine balance between photosynthetic electron transport and the Calvin cycle reactions, leading to over-reduction and excess energy within the thylakoids. The excess energy triggers reactive oxygen species (ROS) overproduction that causes photoinhibition in both photosystems (PS) I and II. However, the role of PSI photoinhibition and its physiological mechanisms for photoprotection have not yet been fully elucidated. In the present study, we analyzed the effects of 15 consecutive days of 100 mM NaCl in Jatropha curcas plants, primarily focusing on the photosynthetic electron flow at PSI level. We found that J. curcas plants have important photoprotective mechanisms to cope with the harmful effects of salinity. We show that maintaining P700 in an oxidized state is an important photoprotector mechanism, avoiding ROS burst in J. curcas exposed to salinity. In addition, upon photoinhibition of PSI, the highly reduced electron transport chain triggers a significant increase in H₂ O₂ content which can lead to the production of hydroxyl radical by Mehler reactions in chloroplast, thereby increasing PSI photoinhibition.

Effects of Burkholderia thailandensis rhamnolipids on the unicellular algae Dunaliella tertiolecta

The effects of rhamnolipids (RLs) produced and further purified from Burkholderia thailandensis, on the unicellular microalgae Dunaliella tertiolecta were investigated, in terms of RLs ability to affect algal growth, photosynthetic apparatus structure and energy flux, round and through photosystems II and I. Specifically, 24-48 h RLs-treated algae (RLs at concentrations ranged from 5 to 50 mg L^-1) showed significantly decreased levels of growth rate, while increased levels of Chl a and b were obtained only in 72-96 h RLs-treated algae. Similarly, although no changes were obtained in the Chl a/b ratio and almost all chlorophyll fluorescence parameters over time, yields of electron transport (ϕR₀, ϕE₀) and respective performance index (PI_total) were negatively affected at 72 and 96 h. Based on those findings, it seems that the inhibitory effect of RLs on the algae growth rate after 24 and 48 h and the gradual attenuation of the phenomenon (after 72 h of exposure), may indicate the initial response of the organism, as well as algae ability to overcome, since RLs showed no effects on algae photosynthetic ability. Those findings reveal for the first time that RLs from Burkholderia thailandensis are not harmful for Dunaliella tertiolecta. However, further studies with the use of more aquatic species could be essential for assessing the RLs-mediated effects on aquatic biota.

Inhibition of TOR in Chlamydomonas reinhardtii Leads to Rapid Cysteine Oxidation Reflecting Sustained Physiological Changes

The target of rapamycin (TOR) kinase is a master metabolic regulator with roles in nutritional sensing, protein translation, and autophagy. In Chlamydomonas reinhardtii, a unicellular green alga, TOR has been linked to the regulation of increased triacylglycerol (TAG) accumulation, suggesting that TOR or a downstream target(s) is responsible for the elusive “lipid switch” in control of increasing TAG accumulation under nutrient limitation. However, while TOR has been well characterized in mammalian systems, it is still poorly understood in photosynthetic systems, and little work has been done to show the role of oxidative signaling in TOR regulation. In this study, the TOR inhibitor AZD8055 was used to relate reversible thiol oxidation to the physiological changes seen under TOR inhibition, including increased TAG content. Using oxidized cysteine resin-assisted capture enrichment coupled with label-free quantitative proteomics, 401 proteins were determined to have significant changes in oxidation following TOR inhibition. These oxidative changes mirrored characterized physiological modifications, supporting the role of reversible thiol oxidation in TOR regulation of TAG production, protein translation, carbohydrate catabolism, and photosynthesis through the use of reversible thiol oxidation. The delineation of redox-controlled proteins under TOR inhibition provides a framework for further characterization of the TOR pathway in photosynthetic eukaryotes.

Salt-Induced Damage is Alleviated by Short-Term Pre-Cold Treatment in Bermudagrass (Cynodon dactylon)

Excess salinity is a major environmental stress that limits growth and development of plants. Improving salt stress tolerance of plants is important in order to enhance land utilization and crop yield. Cold priming has been reported to trigger the protective processes in plants that increase their stress tolerance. Bermudagrass (Cynodon dactylon) is one of the most widely used turfgrass species around the world. However, the effect of cold priming on salt tolerance of bermudagrass is largely unknown. In the present study, wild bermudagrass was pre-treated with 4 °C for 6 h before 150 mM NaCl treatment for one week. The results showed that the cell membrane stability, ion homeostasis and photosynthesis process which are usually negatively affected by salt stress in bermudagrass were alleviated by short-term pre-cold treatment. Additionally, the gene expression profile also corresponded to the change of physiological indexes in bermudagrass. The results suggest that cold priming plays a positive role in improving salt stress tolerance of bermudagrass.

Effect of phosphorus concentration on the photochemical stability of PSII and CO2 assimilation in Pistacia vera L. and Pistacia atlantica Desf

A greenhouse pot experiment was conducted at the faculty of sciences of Gafsa to evaluate the effect of phosphorus treatment on two pistachio species. The seedlings of Pistacia vera and Pistacia atlantica were subjected to six levels of phosphoric acid (P₂O₅) (0, 5, 15, 30, 60 and 120 ppm). Stomatal conductance, net photosynthesis, chlorophyll fluorescence (OJIP) and total chlorophyll content were measured after 1, 2, 3, 6, 8, 9 and 12 weeks of treatment. During the experiment, phosphorus application at 5 ppm increased photosynthesis and stomatal conductance, relative to the treatment 0 ppm only in P. atlantica. However, phosphorus supply at 60 and 120 ppm induced toxicity leading to an inhibition of CO₂ photo-assimilation rate, an alteration of photosystem II (PSII) structure and function and reduction in leaf chlorophyll content in both species. The (OJIP) transient showed complex changes in O-J, J-I and I-P phases of fluorescence. Due to phosphorus toxicity, both donor and acceptor sides of PSII were damaged, electron transport perturbed and chlorophyll pigment reduced which resulted in the fall of CO₂ photo-assimilation rate, followed by mortality in both species.

Performance Index and PSII Connectivity Under Drought and Contrasting Light Regimes in the CAM Orchid Phalaenopsis

Crassulacean acid metabolism (CAM) is a specialized mode of photosynthesis characterized by improved water use efficiency mediated by major nocturnal CO2 fixation. Due to its inherent metabolic plasticity CAM represents a successful physiological strategy for plant adaptation to abiotic stress. The present study reports on the impact of drought stress and different light intensities (PPFD 50 and 200 μmol m-2 s-1) on the photosynthetic performance of the obligate CAM orchid Phalaenopsis "Edessa" by integrating diel gas exchange patterns with assessments of the light reactions by analyzing fast chlorophyll a fluorescence induction. Parameters such as PIabs (performance index), different energy fluxes per active reaction centre (RC) reflecting the electron flow from photosystem II to photosystem I and the energetic communication between PSII complexes defined as connectivity were considered for the first time in a CAM plant. A higher PS II connectivity for plants grown under low light (p ∼ 0.51) compared to plants grown under high light (p ∼ 0.31) brought about similar specific energy fluxes of light absorbance, dissipation and processing through the electron transport chain, irrespective of the light treatment. With a 25% higher maximum quantum yield and comparable biomass formation, low light grown plants indeed proved to process light energy more efficiently compared to high light grown plants. The performance index was identified as a very reliable and sensitive parameter to indicate the onset and progress of drought stress. Under restricted CO2 availability (due to closed stomata) leaves showed higher energy dissipation and partial inactivation of PSII reaction centres to reduce the energy input to the electron transport chain and as such aid in avoiding overexcitation and photodamage. Especially during CAM idling there is a discrepancy between continuous input of light energy but severely reduced availability of both water and CO2, which represents the ultimate electron acceptor. Taken together, our results show a unique flexibility of CAM plants to optimize the light reactions under different environmental conditions in a dual way by either attenuating or increasing energy flux.

Organelle Studies and Proteome Analyses of Mitochondria and Plastids Fractions from the Diatom Thalassiosira pseudonana

Diatoms are unicellular algae and evolved by secondary endosymbiosis, a process in which a red alga-like eukaryote was engulfed by a heterotrophic eukaryotic cell. This gave rise to plastids of remarkable complex architecture and ultrastructure that require elaborate protein importing, trafficking, signaling and intracellular cross-talk pathways. Studying both plastids and mitochondria and their distinctive physiological pathways in organello may greatly contribute to our understanding of photosynthesis, mitochondrial respiration and diatom evolution. The isolation of such complex organelles, however, is still demanding, and existing protocols are either limited to a few species (for plastids) or have not been reported for diatoms so far (for mitochondria). In this work, we present the first isolation protocol for mitochondria from the model diatom Thalassiosira pseudonana. Apart from that, we extended the protocol so that it is also applicable for the purification of a high-quality plastids fraction, and provide detailed structural and physiological characterizations of the resulting organelles. Isolated mitochondria were structurally intact, showed clear evidence of mitochondrial respiration, but the fractions still contained residual cell fragments. In contrast, plastid isolates were virtually free of cellular contaminants, featured structurally preserved thylakoids performing electron transport, but lost most of their stromal components as concluded from Western blots and mass spectrometry. Liquid chromatography electrospray-ionization mass spectrometry studies on mitochondria and thylakoids, moreover, allowed detailed proteome analyses which resulted in extensive proteome maps for both plastids and mitochondria thus helping us to broaden our understanding of organelle metabolism and functionality in diatoms.

Sensing Plant Physiology and Environmental Stress by Automatically Tracking Fj and Fi Features in PSII Chlorophyll Fluorescence Induction

Following a step excitation, chlorophyll fluorescence (ChlF) from photosystem II (PSII) of a dark-adapted photosynthetic organism exhibits the well-known OJIP pattern. The OJIP induction has been widely used in plant science and agriculture engineering. While the J and I phases are related to transitions of photochemical reaction redox states, characteristic fluorescence intensities at the two phases (F_j and F_i ) are often treated at fixed time points in routine measurement and thus do not account for variations in plant and experimental conditions, this (1) neglects the differences in the time of appearance of these phases, which is potentially useful information for characterizing plant status and environmental factors, and (2) leads to errors in measured F_j and F_i values in the many publications. In this work, an alternative method for consistent measurement of F_j and F_i was presented. The proposed method measures the curvatures in the OJIP curve and automatically tracks the characteristic transition points under variable sample and experimental conditions. Experiments were carried out to demonstrate the concept and classification capabilities of the method. This research has established a new framework to analyze ChlF and has enhanced the application capability of ChlF. It is expect useful in analysis ChlF from PSII.

Estimation of Chlorophyll Fluorescence at Different Scales: A Review

Measuring chlorophyll fluorescence is a direct and non-destructive way to monitor vegetation. In this paper, the fluorescence retrieval methods from multiple scales, ranging from near the ground to the use of space-borne sensors, are analyzed and summarized in detail. At the leaf-scale, the chlorophyll fluorescence is measured using active and passive technology. Active remote sensing technology uses a fluorimeter to measure the chlorophyll fluorescence, and passive remote sensing technology mainly depends on the sun-induced chlorophyll fluorescence filling in the Fraunhofer lines or oxygen absorptions bands. Based on these retrieval principles, many retrieval methods have been developed, including the radiance-based methods and the reflectance-based methods near the ground, as well as physically and statistically-based methods that make use of satellite data. The advantages and disadvantages of different approaches for sun-induced chlorophyll fluorescence retrieval are compared and the key issues of the current sun-induced chlorophyll fluorescence retrieval algorithms are discussed. Finally, conclusions and key problems are proposed for the future research.

An eco-designed paper-based algal biosensor for nanoformulated herbicide optical detection

In this study we reported the development of a paper-based algal biosensor for the optical detection of nanoencapsulated-atrazine, a forefront nanoformulated herbicide with a high effective post-emergence herbicidal activity. In particular, the unicellular green photosynthetic algae Chlamydomonas reinhardtii was immobilised on a paper substrate soaked with an agar thin film and placed in a glass optical measurement cell, obtaining a totally environmental-friendly device. Nanoencapsulated-atrazine was detected by following the variable fluorescence (1-V_J) parameter, which decreased inversely proportional to the herbicide concentrations, in a range between 0.5 and 200 nM, indicating a linear relationship in the measured dose-response curves and a detection limit of 4 pM. Interference studies resulted in a very slight interference in presence of 2 ppm copper and 10 ppb arsenic at safety limits, as well as a slight matrix effect and a satisfactory recovery value of 96 ± 5% for 75 nM nanoencapsulated-atrazine in tap water. Stability studies were also performed obtaining a good storage stability up to 3 weeks. Results demonstrated the suitability of the proposed paper-based optical biosensor as a valid support in smart agriculture for on site, environmental friendly, cost effective and sensitive nanoencapsulated-atrazine analysis.

Effect of differently methyl-substituted ionic liquids on Scenedesmus obliquus growth, photosynthesis, respiration, and ultrastructure

Concerns have been raised regarding the ecotoxicity of ionic liquids (ILs) owing to their wide usage in numerous fields. Three imidazolium chloride ILs with different numbers of methyl substituents, 1-decyl-imidazolium chloride ([C₁₀IM]Cl), 1-decyl-3-methylimidazolium chloride ([C₁₀MIM]Cl), and 1-decyl-2,3-dimethylimidazolium chloride ([C₁₀DMIM]Cl), were examined to assess their effects on growth, photosynthesis pigments content, chlorophyll fluorescence, photosynthetic and respiration rate, and cellular ultrastructure of Scenedesmus obliquus. The results showed that algal growth was significantly inhibited by ILs treatments. The observed IC_50,48h doses were 0.10 mg/L [C₁₀IM]Cl, 0.01 mg/L [C₁₀MIM]Cl, and 0.02 mg/L [C₁₀DMIM]Cl. The chlorophyll a, chlorophyll b, and total chlorophyll content declined, and the chlorophyll fluorescence parameters, minimal fluorescence yield (F₀), maximal fluorescence yield (F_m), maximum quantum yield of PSII photochemistry (F_v/F_m), effective quantum yield of PSII [Y(II)], non-photochemical quenching (NPQ) and non-photosynthetic losses yield [Y(NO)] were notably affected by ILs in a dose-dependent manner. ILs affected the primary photosynthetic reaction, impaired heat dissipation capability, and diminished photosynthetic efficiency, indicating negative effects on photosystem II. The photosynthetic and respiration rates of algal cells were also reduced due to the ILs treatments. The adverse effects of ILs on plasmolysis and chloroplast deformation were examined using ultrastructural analyses; chloroplast swelling and lamellar structure almost disappeared after the [C₁₀MIM]Cl treatment, and an increased number of starch grains and vacuoles was observed after all ILs treatments. The results indicated that one-methyl-substituted ILs were more toxic than non-methyl-substituted ILs, which were also more toxic than di-methyl-substituted ILs. The toxicity of the examined ILs showed the following order: [C₁₀IM]Cl < [C₁₀DMIM]Cl ≤ [C₁₀MIM]Cl.

Exploration of Chlorophyll a Fluorescence and Plant Gas Exchange Parameters as Indicators of Drought Tolerance in Perennial Ryegrass

Perennial ryegrass (Lolium perenne L.) belongs to the common cultivated grass species in Central and Western Europe. Despite being considered to be susceptible to drought, it is frequently used for forming the turf in urban green areas. In such areas, the water deficit in soil is recognized as one of the most important environmental factors, which can limit plant growth. The basic aim of this work was to explore the mechanisms standing behind the changes in the photosynthetic apparatus performance of two perennial ryegrass turf varieties grown under drought stress using comprehensive in vivo chlorophyll fluorescence signal analyses and plant gas exchange measurements. Drought was applied after eight weeks of sowing by controlling the humidity of the roots ground medium at the levels of 30, 50, and 70% of the field water capacity. Measurements were carried out at four times: 0, 120, and 240 h after drought application and after recovery (refilling water to 70%). We found that the difference between the two tested varieties' response resulted from a particular re-reduction of P700+ (reaction certer of PSI) that was caused by slower electron donation from P680. The difference in the rate of electron flow from Photosystem II (PSII) to PSI was also detected. The application of the combined tools (plants' photosynthetic efficiency analysis and plant gas exchange measurements) allowed exploring and explaining the specific variety response to drought stress.

Growth, physiological function, and antioxidant defense system responses of Lemna minor L. to decabromodiphenyl ether (BDE-209) induced phytotoxicity

Polybrominated diphenyl ethers (PBDEs), represent one of the new types of persistent organic pollutants (POPs) that are currently found in ambient aquatic ecosystems. Lemna minor L. is a floating freshwater plant, which is widely employed for phytotoxicity studies of xenobiotic substances. For this study, we investigated the growth, physiological functions, and antioxidant capacities of L. minor, which were exposed to 0-20 mg L^-1 decabromodiphenyl ether (BDE-209) for 14 days. A logistic model was suitable for describing the growth of L. minor when the BDE-209 concentration was in the range of from 0 to 15 mg L^-1. When exposed to 5 and 10 mg L^-1 BDE-209, the growth of L. minor was significantly increased, where the intrinsic rate (r) and the maximum capacity of the environment (K) of L. minor were significantly higher than those of the control. In this case, the chlorophyll content and soluble proteins were also markedly increased. Moreover, the photosynthetic function (Fv/Fm, PI) was enhanced. However, for 15 mg L^-1 BDE-29 treated group, the growth of L. minor was significantly inhibited, with decreases in chlorophyll and the soluble protein content, until the L. minor yellowed and expired under a concentration of 20 mg L^-1. Photosynthetic functions were also negatively correlated with increasing increments of BDE-209 (15 and 20 mg L^-1). The malondialdehyde (MDA), superoxide anion radical (O₂^̄·) content, and permeability of the plasma membranes increased with higher BDE-209 concentrations (0-20 mg L^-1). The superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activities of L. minor increased when the BDE-209 concentration ranged from 0 to 10 mg L^-1; however, the activities of SOD and POD were decreased. Only the CAT activity remained higher in contrast to the control group under 15-20 mg L^-1 BDE-209. These results demonstrated that 15 mg L^-1 BDE-209 imparted high toxicity to L. minor, which was a consequence of the overproduction of reactive oxygen species (ROS), which conveyed oxidative damage to plant cells. This study provided a theoretical understanding of BDE-209 induced toxicity as relates to the physiology and biochemistry of higher hydrophytes.

Ancient barley landraces adapted to marginal soils demonstrate exceptional tolerance to manganese limitation

BACKGROUND AND AIMS

Micronutrient deficiency in cereals is a problem of global significance, severely reducing grain yield and quality in marginal soils. Ancient landraces represent, through hundreds of years of local adaptation to adverse soil conditions, a unique reservoir of genes and unexplored traits for enhancing yield and abiotic stress tolerance. Here we explored and compared the genetic variation in a population of Northern European barley landraces and modern elite varieties, and their tolerance to manganese (Mn) limitation.

METHODS

A total of 135 barley accessions were genotyped and the genetic diversity was explored using Neighbor-Joining clustering. Based on this analysis, a sub-population of genetically diverse landraces and modern elite control lines were evaluated phenotypically for their ability to cope with Mn-deficient conditions, across three different environments increasing in complexity from hydroponics through pot experiments to regional field trials.

KEY RESULTS

Genetically a group of Scottish barley landraces (Bere barley) were found to cluster according to their island of origin, and accessions adapted to distinct biogeographical zones with reduced soil fertility had particularly larger Mn, but also zinc (Zn) and copper (Cu) concentrations in the shoot. Strikingly, when grown in an alkaline sandy soil in the field, the locally adapted landraces demonstrated an exceptional ability to acquire and translocate Mn to developing leaves, maintain photosynthesis and generate robust grain yields, whereas modern elite varieties totally failed to complete their life cycle.

CONCLUSIONS

Our results highlight the importance of gene pools of local adaptation and the value of ancient landrace material to identify and characterize genes that control nutrient use efficiency traits in adverse environments to raise future crop production and improve agricultural sustainability in marginal soils. We propose and discuss a model summarizing the physiological mechanisms involved in the complex trait of tolerance to Mn limitation.

Drought tolerance response of high-yielding soybean varieties to mild drought: physiological and photochemical adjustments

Soybean is a crop of agronomic importance that requires adequate watering during its growth to achieve high production. In this study, we determined physiological, photochemical and metabolic differences in five soybean varieties selected from the parental lines of a nested association mapping population during mild drought. These varieties have been described as high yielding (NE3001, HY1; LD01-5907, HY2) or drought tolerant (PI518751; HYD1; PI398881, HYD2). Nevertheless, there has been little research on the physiological traits that sustain their high productivity under water-limited conditions. The results indicate that high-yielding varieties under drought cope with the shortage of water by enhancing their photoprotective defences and invest in growth and productivity, linked to a higher intrinsic water use efficiency. This is the case of the variety N-3001 (HY1), with a tolerance strategy involving a faster transition into the reproductive stage to avoid the drought period. The present study highlights the role of the physiological and biochemical adjustments of various soybean varieties to cope with water-limited conditions. Moreover, the obtained results underscore the fact that the high phenotypic plasticity among soybean phenotypes should be exploited to compensate for the low genetic variability of this species when selecting plant productivity in constrained environments.

Genome-wide association study identifies variation of glucosidase being linked to natural variation of the maximal quantum yield of photosystem II

The maximum quantum yield of photosystem II (as reflected by variable to maximum chlorophyll a fluorescence, F_v /F_m ) is regarded as one of the most important photosynthetic parameters. The genetic basis underlying natural variation in F_v /F_m , which shows low level of variations in plants under non-stress conditions, is not easy to be exploited using the conventional gene cloning approaches. Thus, in order to answer this question, we have followed another strategy: we used genome-wide association study (GWAS) and transgenic analysis in a rice mini-core collection. We report here that four single-nucleotide polymorphisms, located in the promoter region of β-glucosidase 5 (BGlu-5), are associated with observed variation in F_v /F_m . Indeed, our transgenic analysis showed a good correlation between BGlu-5 and F_v /F_m . Thus, our work demonstrates the feasibility of using GWAS to study natural variation in F_v /F_m , suggesting that cis-element polymorphism, affecting the BGlu-5 expression level, may, indirectly, contribute to F_v /F_m variation in rice through the gibberellin signaling pathway. Further research is needed to understand the mechanism of our novel observation.

Photo-reducible plastoquinone pools in chloroplasts of Tradescentia plants acclimated to high and low light

In photosynthetic systems of oxygenic type, plastoquinone (PQ) molecules are reduced by photosystem II (PSII). The turnover of PQ determines the rate of PSII operation. PQ molecules are present in surplus with respect to PSII. In this work, using the pulse amplitude modulation-fluorometry technique, we quantified photo-reducible PQ pools in chloroplasts of two contrasting ecotypes of Tradescantia, acclimated either to low light (~ 100 μmol photons·m^-2 ·s^-1 , LL) or to high light (~ 1000 μmol photons·m^-2 ·s^-1 , HL). The LL-grown plants are characterized by higher capacity of rapidly reducible PQ pool ([PQ]₀ /[PSII] ≈ 8) as compared to HL-grown plants of both species ([PQ]₀ /[PSII] ≈ 4). The elevated content of PQ in LL plants favours photosynthetic electron flow at low-solar irradiance.

Light acclimation of shade-tolerant and sun-resistant Tradescantia species: photochemical activity of PSII and its sensitivity to heat treatment

In this work, we have compared photosynthetic characteristics of photosystem II (PSII) in Tradescantia leaves of two contrasting ecotypes grown under the low light (LL) and high light (HL) regimes during their entire growth period. Plants of the same genus, T. fluminensis (shade-tolerant) and T. sillamontana (sun-resistant), were cultivated at 50-125 µmol photons m^-2 s^-1 (LL) or at 875-1000 µmol photons m^-2 s^-1 (HL). Analyses of intrinsic PSII efficiency was based on measurements of fast chlorophyll (Chl) a fluorescence kinetics (the OJIP test). The fluorescence parameters F_v/F_m (variable fluorescence) and F₀ (the initial level of fluorescence) in dark-adapted leaves were used to quantify the photochemical properties of PSII. Plants of different ecotypes showed different sustainability with respect to changes in the environmental light intensity and temperature treatment. The sun-resistant species T. sillamontana revealed the tolerance to variations in irradiation intensity, demonstrating constancy of maximum quantum efficiency of PSII upon variations of the growth light. In contrast to T. sillamontana, facultative shade species T. fluminensis demonstrated variability of PSII photochemical activity, depending on the growth light intensity. The susceptibility of T. fluminensis to solar stress was documented by a decrease in F_v/F_m and a rise of F₀ during the long-term exposition of T. fluminensis to HL, indicating the loss of photochemical activity of PSII. The short-term (10 min) heat treatment of leaf cuttings caused inactivation of PSII. The temperature-dependent heating effects were different in T. fluminensis and T. sillamontana. Sun-resistant plants T. sillamontana acclimated to LL and HL displayed the same plots of F_v/F_m versus the treatment temperature (t), demonstrating a decrease in F_v/F_m at t ≥ 45 °C. The leaves of shadow-tolerant species T. fluminensis grown under the LL and HL conditions revealed different sensitivities to heat treatment. Plants grown under the solar stress conditions (HL) demonstrated a gradual decline of F_v/F_m at lower heating temperatures (t ≥ 25 °C), indicating the "fragility" of their PSII as compared to T. fluminensis grown at LL. Different responses of sun and shadow species of Tradescantia to growth light and heat treatment are discussed in the context of their biochemical and ecophysiological properties.

Characterizing the effect of Poast on Chlorella vulgaris, a non-target organism

Herbicides may cause unexpected damage to non-target organisms as it is challenging to predict undesirable biotic interactions. Poast is a widely used herbicide formulation that contains sethoxydim and targets the acetyl-CoA carboxylase of perennial grasses. In this study, Chlorella vulgaris, a unicellular green microalga, was exposed to a 0.08% working concentration of Poast and the physiological and biochemical changes that took place were monitored using biochemical assays, fluorometry, oximetry, and immunoblotting. Within 15 min, severe photosynthetic damage was observed through a reduction in oxygen production and a reduced rate of electron transfer beyond photosystem II. In addition to direct damage to the photosynthetic machinery, it was shown that cells experienced membrane fragmentation. Within 30 min, over 90% of the exposed cells were nonviable. However, sethoxydim, the active ingredient, did not cause detrimental effects when applied along with mineral spirits, the primary solvent of the formulation. A synergistic or additive effect between sethoxydim and the formulation components cannot be ruled out. This data suggests that Poast has the potential to cause severe harm to unicellular phototrophs in the case of herbicide over application or runoff.

A sixty-year tryst with photosynthesis and related processes: an informal personal perspective

After briefly describing my early collaborative work at the University of Allahabad, that had laid the foundation of my research life, I present here some of our research on photosynthesis at the University of Illinois at Urbana-Champaign, randomly selected from light absorption to NADP⁺ reduction in plants, algae, and cyanobacteria. These include the fact that (i) both the light reactions I and II are powered by light absorbed by chlorophyll (Chl) a of different spectral forms; (ii) light emission (fluorescence, delayed fluorescence, and thermoluminescence) by plants, algae, and cyanobacteria provides detailed information on these reactions and beyond; (iii) primary photochemistry in both the photosystems I (PS I) and II (PS II) occurs within a few picoseconds; and (iv) most importantly, bicarbonate plays a unique role on the electron acceptor side of PS II, specifically at the two-electron gate of PS II. Currently, the ongoing research around the world is, and should be, directed towards making photosynthesis better able to deal with the global issues (such as increasing population, dwindling resources, and rising temperature) particularly through genetic modification. However, basic research is necessary to continue to provide us with an understanding of the molecular mechanism of the process and to guide us in reaching our goals of increasing food production and other chemicals we need for our lives.

Changes in the photosynthetic apparatus and lipid droplet formation in Chlamydomonas reinhardtii under iron deficiency

The unicellular photosynthetic alga Chlamydomonas reinhardtii was propagated in iron deficiency medium and patterns of growth, photosynthetic efficiency, lipid accumulation, as well as the expression of lipid biosynthetic and photosynthesis-related proteins were analysed and compared with iron-sufficient growth conditions. As expected, the photosynthetic rate was reduced (maximally after 4 days of growth) as a result of increased non-photochemical quenching (NPQ). Surprisingly, the stress-response protein LHCSR3 was expressed in conditions of iron deficiency that cause NPQ induction. In addition, the protein contents of both the PSI and PSII reaction centres were gradually reduced during growth in iron deficiency medium. Interestingly, the two generations of Fe deficiency cells could be able to recover the photosynthesis but the second generation cells recovered much slower as these cells were severely in shock. Analysis by flow cytometry with fluorescence-activated cell sorting and thin layer chromatography showed that iron deficiency also induced the accumulation of triacylglycerides (TAG), which resulted in the formation of lipid droplets. This was most significant between 48 and 72 h of growth. Dramatic increases in DGAT2A and PDAT1 levels were caused by iron starvation, which indicated that the biosynthesis of TAG had been increased. Analysis using gas chromatography mass spectrometry showed that levels of 16:0, 18:0, 18:2 and 18:3^Δ9,12,15 fatty acids were significantly elevated. The results of this study highlight the genes/enzymes of Chlamydomonas that affect lipid synthesis through their influence on photosynthesis, and these represent potential targets of metabolic engineering to develop strains for biofuel production.

Influence of nitrogen source on photochemistry and antenna size of the photosystems in marine green macroalgae, Ulva lactuca

Ulva lactuca is regarded as a prospective energy crop for biorefinery owing to its affluent biochemical composition and high growth rate. In fast-growing macroalgae, biomass development strictly depends on external nitrogen pools. Additionally, nitrogen uptake rates and photosynthetic pigment content vary with type of nitrogen source and light conditions. However, the combined influence of nitrogen source and light intensity on photosynthesis is not widely studied. In present study, pale green phenotype of U. lactuca was obtained under high light (HL) condition when inorganic nitrogen (nitrate) in the media was substituted with organic nitrogen (urea). Further, pale green phenotype survived the saturating light intensities in contrast to the normal pigmented control which bleached in HL. Detailed analysis of biochemical composition and photosynthesis was performed to understand functional antenna size and photoprotection in pale green phenotype. Under HL, urea-grown cultures exhibited increased growth rate, carbohydrate and lipid content while substantial reduction in protein, chlorophyll content and PSII antenna size was observed. Further, in vivo slow and polyphasic chlorophyll a (Chl a) fluorescence studies revealed reduction in excitation pressure on PSII along with low non-photochemical quenching thus, transmitting most of the absorbed energy into photochemistry. The results obtained could be correlated to previous report on cultivation of U. lactuca through saturating summer intensities (1000 µmole photons m^-2 s^-1) in urea based: poultry litter extract (PLE). Having proved critical role of urea in conforming photoprotection, the application PLE was authenticated for futuristic, sustainable and year-round biomass cultivation.

Modulation in light utilization by a microalga Asteracys sp. under mixotrophic growth regimes

This study is the first to explore the influence of incident light intensity on the photosynthetic responses under mixotrophic growth of microalga Asteracys sp. When grown mixotrophically, there was an enhanced regulation of non-photochemical quenching (NPQ) of the excited state of chlorophyll (Chl) a within the cells in response to white cool fluorescent high light (HL; 600 µmol photons m^-2 s^-1). Simultaneous measurement of reactive oxygen species (ROS) production as malondialdehyde (MDA) and ascorbate peroxidase (APX), an ROS scavenger, showed improved management of stress within mixotrophic cells under HL. Despite the observed decrease in quantum yield of photosynthesis measured through the Chl a fluorescence transient, no reduction in biomass accumulation was observed under HL for mixotrophy. However, biomass loss owing to photoinhibition was observed in cells grown phototrophically under the same irradiance. The measurements of dark recovery of NPQ suggested that "state transitions" may be partly responsible for regulating overall photosynthesis in Asteracys sp. The partitioning of photochemical and non-photochemical processes to sustain HL stress was analysed. Collectively, this study proposes that mixotrophy using glucose leads to a change in the photosynthetic abilities of Asteracys sp. while enhancing the adaptability of the alga to high irradiances.

Low temperature induced modulation of photosynthetic induction in non-acclimated and cold-acclimated Arabidopsis thaliana: chlorophyll a fluorescence and gas-exchange measurements

Cold acclimation modifies the photosynthetic machinery and enables plants to survive at sub-zero temperatures, whereas in warm habitats, many species suffer even at non-freezing temperatures. We have measured chlorophyll a fluorescence (ChlF) and CO₂ assimilation to investigate the effects of cold acclimation, and of low temperatures, on a cold-sensitive Arabidopsis thaliana accession C24. Upon excitation with low intensity (40 µmol photons m^- 2 s^- 1) ~ 620 nm light, slow (minute range) ChlF transients, at ~ 22 °C, showed two waves in the SMT phase (S, semi steady-state; M, maximum; T, terminal steady-state), whereas CO₂ assimilation showed a linear increase with time. Low-temperature treatment (down to - 1.5 °C) strongly modulated the SMT phase and stimulated a peak in the CO₂ assimilation induction curve. We show that the SMT phase, at ~ 22 °C, was abolished when measured under high actinic irradiance, or when 3-(3, 4-dichlorophenyl)-1, 1- dimethylurea (DCMU, an inhibitor of electron flow) or methyl viologen (MV, a Photosystem I (PSI) electron acceptor) was added to the system. Our data suggest that stimulation of the SMT wave, at low temperatures, has multiple reasons, which may include changes in both photochemical and biochemical reactions leading to modulations in non-photochemical quenching (NPQ) of the excited state of Chl, "state transitions," as well as changes in the rate of cyclic electron flow through PSI. Further, we suggest that cold acclimation, in accession C24, promotes "state transition" and protects photosystems by preventing high excitation pressure during low-temperature exposure.

Three phases of energy-dependent induction of [Formula: see text] and Chl a fluorescence in Tradescantia fluminensis leaves

In plants, the short-term regulation (STR, seconds to minute time scale) of photosynthetic apparatus is associated with the energy-dependent control in the chloroplast electron transport, the distribution of light energy between photosystems (PS) II and I, activation/deactivation of the Calvin-Benson cycle (CBC) enzymes, and relocation of chloroplasts within the plant cell. In this work, using a dual-PAM technique for measuring the time-courses of P₇₀₀ photooxidation and Chl a fluorescence, we have investigated the STR events in Tradescantia fluminensis leaves. The comparison of Chl a fluorescence and [Formula: see text] induction allowed us to investigate the contribution of the trans-thylakoid pH difference (ΔpH) to the STR events. Two parameters were used as the indicators of ΔpH generation: pH-dependent component of non-photochemical quenching of Chl a fluorescence, and pH_in-dependent rate of electron transfer from plastoquinol (PQH₂) to [Formula: see text] (via the Cyt b₆f complex and plastocyanin). In dark-adapted leaves, kinetics of [Formula: see text] induction revealed three phases. Initial phase is characterized by rapid electron flow to [Formula: see text] (τ_1/2 ~ 5-10 ms), which is likely related to cyclic electron flow around PSI, while the outflow of electrons from PSI is restricted by slow consumption of NADPH in the CBC. The light-induced generation of ΔpH and activation of the CBC promote photooxidation of P₇₀₀ and concomitant retardation of [Formula: see text] reduction (τ_1/2 ~ 20 ms). Prolonged illumination induces additional slowing down of electron transfer to [Formula: see text] (τ_1/2 ≥ 30-35 ms). The latter effect is not accompanied by changes in the Chl a fluorescence parameters which are sensitive to ΔpH generation. We suggest the tentative explanation of the latter results by the reversal of Q-cycle, which causes the deceleration of PQH₂ oxidation due to the back pressure of stromal reductants.

An Altered Circadian Clock Coupled with a Higher Photosynthesis Efficiency Could Explain the Better Agronomic Performance of a New Coffee Clone When Compared with a Standard Variety

In a context where climate change is threatening coffee productivity, the management of coffee leaf rust is a challenging issue. Major resistant genes, which have been used for many years, are systematically being overcome by pathogens. Developing healthy plants, able to defend themselves and be productive even when attacked by the pathogen, should be part of a more sustainable alternative approach. We compared one hybrid (GPFA124), selected for its good health in various environments including a reduced rust incidence, and the cv. 'Caturra', considered as a standard in terms of productivity and quality but highly susceptible to rust, for phenotypic variables and for the expression of genes involved in the circadian clock and in primary photosynthetic metabolism. The GPFA124 hybrid showed increased photosynthetic electron transport efficiency, better carbon partitioning, and higher chlorophyll content. A strong relationship exists between chlorophyll a fluorescence and the expression of genes related to the photosynthetic electron transport chain. We also showed an alteration of the amplitude of circadian clock genes in the clone. Our work also indicated that increased photosynthetic electron transport efficiency is related to the clone's better performance. Chlorophyll a fluorescence measurement is a good indicator of the coffee tree's physiological status for the breeder. We suggest a connection between the circadian clock and carbon metabolism in coffee tree.

Resource allocation in response to herbivory and gall formation in Linaria vulgaris

Trehalose and its precursor, trehalose 6-phosphate (T6P), are essential regulators of plant response to abiotic and biotic stress. Here we used the specific host-insect interaction between Linaria vulgaris (Plantaginaceae) and stem-galling weevil, Rhinusa pilosa (Mecinini, Curculionidae) with the aim to distinguish carbohydrate allocation patterns in response to herbivory, gall formation (G1, 24 h after oviposition), and gall development (G2, 7 days after oviposition) under controlled conditions. The hypothesis is that herbivory and galling induce distinct responses in both leaves and stems, and that shifts in carbon allocations are regulated by signaling sugars. Systemic response to herbivory was accumulation of T6P and maltose. The main feature of G1 in the stems was accumulation of trehalose, accompanied by increased T6P, turanose and glucose content, oppositely to the leaves. In G2, galls had 3-folds higher weight than controls, with further accumulation of fructose, glucose, turanose, and total water-insoluble carbohydrates (TIC), while the sucrose/hexose ratio decreased. Analysis of fast chlorophyll fluorescence kinetic (OJIP) transients in G2 showed a slight decrease in quantum yield of electron transport flux from Q_A to Q_B, and towards photosystem I acceptor side, correlated with the decreased content of photosynthetic pigments and hexoses accumulation. Redistribution of photosynthates, and accumulation of T6P were induced in response to herbivory, indicating its signaling role. The results support the hypothesis that R. pilosa can induce plant reprogramming towards the accumulation of beneficial carbohydrates in developing gall by mechanisms which include both T6P and trehalose.

Distinction and characterisation of rice genotypes tolerant to combined stresses of salinity and partial submergence, proved by a high-resolution chlorophyll fluorescence imaging system

Chlorophyll a fluorescence (ChlF) parameters measured with fluorescence imaging techniques were used to investigate the combined effect of salt and partial submergence stress to understand photosynthetic performance in rice (Oryza sativa L.). ChlF parameters such as maximal fluorescence (Fm), variable fluorescence (Fv=Fm -F0), the maximal photochemical efficiency of PSII (Fv/Fm) and the quantum yield of nonregulated energy dissipation of PSII (Y(NO)) were able to distinguish genotypes precisely based on their sensitivity to stress. Upon analysis, we found the images of F0 were indistinguishable among the genotypes, irrespective of their tolerance to salt and partial submergence stress. On the contrary, the images of Fm and Fv/Fm showed marked differences between the tolerant and susceptible genotypes in terms of tissue greenness and the appearance of dark spots as stress symptoms. The images of effective PSII quantum yield, the coefficient of nonphotochemical quenching (qN) and the coefficient of photochemical quenching (qP) captured under different PAR were able to distinguish the tolerant and susceptible genotypes, and were also quite effective for differentiating the tolerant and moderately tolerant ones. Similarly, the values of electron transport rate, qN, qP and Y(NO) were also able to distinguish the genotypes based on their sensitivity to stress. Overall, this investigation indicates the suitability of chlorophyll fluorescence imaging technique for precise phenotyping of rice based on their sensitivity to the combined effect of salt and partial submergence.

Effects of Low-Temperature Stress and Brassinolide Application on the Photosynthesis and Leaf Structure of Tung Tree Seedlings

The tung tree is an important woody oil tree species. Tung oil extracted from the tung fruit seeds is used in the manufacture of environmentally friendly paint. This study investigated the effects of the application of brassinolide (BR) under different temperature conditions on the chlorophyll content, photosynthesis, chlorophyll fluorescence, leaf structure, and chloroplast ultrastructure in Vernicia fordii and Vernicia montana. The conditions used were 8°C-Control (low temperature and no BR), 8°C-BR (low temperature and BR application), 28°C-Control (normal temperature and no BR), and 28°C-BR (normal temperature and BR application), and effects were monitored from 5 to 15 days after the treatments (DAT). The results showed that the low temperature treatment (8°C-Control) significantly reduced the net photosynthetic rate (P_n ), stomatal conductance (G_s ), maximum fluorescence (F_m ), maximum photochemical efficiency (F _v/F _m), and actual photochemical and quantum efficiency (Φ _PSII ) compared to the control condition (28°C-Control). However, the external application of BR alleviated the negative effects of low-temperature stress to some degree for all the above parameters for both species tested, except for P _n and G _s at 15 DAT. There were no significant differences in most of the parameters in either species between the 28°C-Control and 28°C-BR treatments. At 10 and 15 DAT of low-temperature stress, the 8°C-Control treatment significantly reduced leaf cell tense ratio (CTR) and increased spongy ratio (SR) compared to the 28°C-Control, whereas BR application alleviated the adverse effects. Moreover, the 8°C-Control treatment significantly destroyed the chloroplast structure, loosening the thylakoids until they disintegrated, while exogenous spraying of BR protected the chloroplast structure and enabled it to function properly in both species. Our results suggested that long-term low temperatures significantly reduced the photosynthetic efficiency of tung tree seedlings, affecting the formation of the internal structure of plant leaves and destroying the integrity and function of the chloroplast. To prevent this, external application of BR to tung tree seedlings could enhance the photosynthetic potential of tung trees by maintaining the stability of the leaf structure, morphology, and function, and alleviating the damage caused by cold injury. The results also showed that V. fordii seedlings are more resistant to low temperatures than V. montana seedlings.

Cadmium accumulation and toxicity affect the extracytoplasmic polyphosphate level in Chlamydomonas reinhardtii

Cadmium is a non-essential metal and highly toxic for biological functions. Depending on the dose of Cd²⁺, the biochemical response will differ. In this study, we investigated the level of extracytoplasmic polyphosphate (polyP) when Chlamydomonas reinhardtii was exposed to the effect of CdCl₂. When compared to control cells, Cd²⁺-treated cells to 400-600 µM showed a decrease in the growth rate from 0.78 to 0.38 d^-1 for the strain CC-125, and a decrease from 0.81 to 0.32-0.35 d^-1 for CC-503. This indicated a strong toxicity effect on the population growth of cells during 72 h. In addition, the results demonstrated the decrease in the synthesis and/or the degradation of polyP that was correlated with the accumulation of Cd²⁺ in both algal strains. Furthermore, the level of polyP decreased in relation to the decrease of F_V/F_M value. The toxicity of Cd²⁺ induced a high level of cell necrosis for CC-503, and the level of polyP could not be recovered at 72 h. In response to the toxic effects of Cd²⁺, the observed formation of palmelloid colonies by CC-125 cells was correlated with the recovery of the polyP level. Nevertheless, both algal strains were able to accumulate significant amount of Cd²⁺ in their biomass. Therefore, our study demonstrated a distinct impact of Cd²⁺ on the metabolism of polyP (synthesis and/or degradation), which was dependent on the concentration of CdCl₂ and the Chlamydomonas strain. Based on this study, the level of polyP can be used as a biomarker of Cd²⁺ toxicity at 24-48 h, even with the cell wall-deficient strain CC-503.

Morphophysiological responses and tolerance mechanisms of Xanthium strumarium to manganese stress

Effective phytoremediation of manganese (Mn) requires the careful selection of a species that has a relatively high manganese tolerance. Exploring the physiological mechanisms related to Mn stress responses is crucial for identifying and employing species for Mn phytoremediation. Xanthium strumarium is a species that can accumulate high levels of Mn, thus it is a candidate species for Mn-phytoremediation. To reveal the tolerance mechanisms of this species to manage Mn stress, the morphological, physiological, and biochemical responses of seedlings grown in water cultures under six different Mn concentrations were analyzed. The results showed that X. strumarium can accumulate high levels of Mn, even as plant growth was inhibited by rising Mn concentrations. Malondialdehyde (MDA) content increased and catalase (CAT) activity decreased along with the increased Mn concentrations, while soluble protein and proline content, as well as the superoxide dismutase (SOD) and peroxidase (POD) enzymes, all increased initially and then declined. The highest value of POD, SOD, soluble protein and proline all occurred at 5000 µM of Mn stress, which means that X. strumarium can adapt to low concentration of Mn stress. The net photosynthetic rate (Pn), stomatal conductance (Gs), intercellular CO₂ concentration (Ci) and transpiration rate (Tr) decreased, and the stomatal limitation (Ls) increased in response to Mn stress. Furthermore, water use efficiency (WUE) and intrinsic water use efficiency (WUEi) increased first under low concentration of Mn, and then reduced as the concentration of Mn increased. The maximum quantum efficiency of PSII photochemistry (Fv/Fm), efficiency of excitation capture by open PSII reaction centers (Fv'/Fm'), electron transport rate (ETR) declined as Mn concentration increased. In conclusion, the above results showed that X. strumarium can be effectively used for phytoremediation of Mn-contaminated soils.

Nitric oxide alleviates toxicity of hexavalent chromium on tall fescue and improves performance of photosystem II

Tall fescue (Festuca arundinacea Schreb) was widely studied for phytoremediation of organic or heavy metal contaminated soils. However, there is still little information concerning toxicity of chromium (Cr) to tall fescue and roles of nitric oxide (NO) in plants against Cr(VI) stress. In this study, different Cr(VI) treatments (0, 1, 5 and 10 mg/L Cr(VI)) and NO treatments were applied with different combinations in hydroponics culture and their interactions to tall fescue were studied. Specifically, 100 µM sodium nitroprusside (SNP) and 100 µM N^G-nitro-L-arginine-methyl ester (L-NAME) treatments were used to apply exogenous NO or inhibit synthesis of NO respectively. Our results showed that tall fescue exhibits comparable Cr(VI) tolerance as wheat (Triticum aestivum L.). Additionally, Cr(VI) accumulation in tall fescue leaves were carefully studied and discussed. Moreover, we observed the significantly increased reactive oxygen species (ROS) contents of tall fescue when subjected to Cr(VI) stress, as well as decreased photosynthetic activities induced by Cr(VI) stress by methods of chlorophyll a fluorescence transient, slow chlorophyll fluorescence kinetics and rapid light response curves. Decreased behaviors of photosynthetic activities may due to destruction of antennae pigments by Cr(VI), ROS burst induced by Cr(VI), and down regulation of photosystem II (PSII) by non-photochemical quenching to avoid over reduction of quinone A, which could be considered as an important strategy to cope with Cr(VI) stress. Meanwhile, exogenous NO treatment improves overall physiological and photosynthetic behaviors of tall fescue against Cr(VI) stress. Moreover, increased translocation factors and improved Cr(VI) tolerance of plants under exogenous NO treatment suggest that SNP treatment could be a useful application for Cr phytoremediation.

Identification of genomic loci associated with 21chlorophyll fluorescence phenotypes by genome-wide association analysis in soybean

BACKGROUND

Photosynthesis is able to convert solar energy into chemical energy in the form of biomass, but the efficiency of photosynthetic solar energy conversion is low. Chlorophyll fluorescence measurements are rapid, non-destructive, and can provide a wealth of information about the efficiencies of the photosynthetic light reaction processes. Efforts aimed at assessing genetic variation and/or mapping of genetic loci associated with chlorophyll fluorescence phenotypes have been rather limited.

RESULTS

Evaluation of SoySNP50K iSelect SNP Beadchip data from the 189 genotypes phenotyped in this analysis identified 32,453 SNPs with a minor allele frequency (MAF) ≥ 5%. A total of 288 (non-unique) SNPs were significantly associated with one or more of the 21 chlorophyll fluorescence phenotypes. Of these, 155 were unique SNPs and 100 SNPs were only associated with a single fluorescence phenotype, while 28, 11, 2, and 14 SNPs, were associated with two, three, four and five or more fluorescence phenotypes, respectively. The 288 non-unique SNPs represent 155 unique SNPs that mark 53 loci. The 155 unique SNPs included 27 that were associated with three or more phenotypes, and thus were called multi-phenotype SNPs. These 27 multi-phenotype SNPs marked 13 multi-phenotype loci (MPL) identified by individual SNPs associated with multiple chlorophyll fluorescence phenotypes or by more than one SNP located within 0.5 MB of other multi-phenotype SNPs.

CONCLUSION

A search in the genomic regions highlighted by these 13 MPL identified genes with annotations indicating involvement in photosynthetic light dependent reactions. These, as well as loci associated with only one or two chlorophyll fluorescence traits, should be useful to develop a better understanding of the genetic basis of photosynthetic light dependent reactions as a whole as well as of specific components of the electron transport chain in soybean. Accordingly, additional genetic and physiological analyses are necessary to determine the relevance and effectiveness of the identified loci for crop improvement efforts.

Identification of genomic loci associated with 21chlorophyll fluorescence phenotypes by genome-wide association analysis in soybean

BACKGROUND

Photosynthesis is able to convert solar energy into chemical energy in the form of biomass, but the efficiency of photosynthetic solar energy conversion is low. Chlorophyll fluorescence measurements are rapid, non-destructive, and can provide a wealth of information about the efficiencies of the photosynthetic light reaction processes. Efforts aimed at assessing genetic variation and/or mapping of genetic loci associated with chlorophyll fluorescence phenotypes have been rather limited.

RESULTS

Evaluation of SoySNP50K iSelect SNP Beadchip data from the 189 genotypes phenotyped in this analysis identified 32,453 SNPs with a minor allele frequency (MAF) ≥ 5%. A total of 288 (non-unique) SNPs were significantly associated with one or more of the 21 chlorophyll fluorescence phenotypes. Of these, 155 were unique SNPs and 100 SNPs were only associated with a single fluorescence phenotype, while 28, 11, 2, and 14 SNPs, were associated with two, three, four and five or more fluorescence phenotypes, respectively. The 288 non-unique SNPs represent 155 unique SNPs that mark 53 loci. The 155 unique SNPs included 27 that were associated with three or more phenotypes, and thus were called multi-phenotype SNPs. These 27 multi-phenotype SNPs marked 13 multi-phenotype loci (MPL) identified by individual SNPs associated with multiple chlorophyll fluorescence phenotypes or by more than one SNP located within 0.5 MB of other multi-phenotype SNPs.

CONCLUSION

A search in the genomic regions highlighted by these 13 MPL identified genes with annotations indicating involvement in photosynthetic light dependent reactions. These, as well as loci associated with only one or two chlorophyll fluorescence traits, should be useful to develop a better understanding of the genetic basis of photosynthetic light dependent reactions as a whole as well as of specific components of the electron transport chain in soybean. Accordingly, additional genetic and physiological analyses are necessary to determine the relevance and effectiveness of the identified loci for crop improvement efforts.

Effects of drought stress on photosynthesis and photosynthetic electron transport chain in young apple tree leaves

In our study, the effects of water stress on photosynthesis and photosynthetic electron transport chain (PETC) were studied in several ways, including monitoring the change of gas exchange parameters, modulated chlorophyll fluorescence, rapid fluorescence induction kinetics, reactive oxygen species (ROS), antioxidant enzyme activities and D1 protein levels in apple leaves. Our results show that when leaf water potential (ψ w) is above -1.5 MPa, the stomatal limitation should be the main reason for a drop of photosynthesis. In this period, photosynthetic rate (P N), stomatal conductance (G s), transpiration rate (E) and intercellular CO2 concentration (C i) all showed a strong positive correlation with ψ w Modulated chlorophyll fluorescence parameters related to photosynthetic biochemistry activity including maximum photochemical efficiency (Fv/Fm), actual photochemical efficiency of PSII (ΦPSII), photochemical quenching coefficient (q P) and coefficient of photochemical fluorescence quenching assuming interconnected PSII antennae (q L) also showed a strong positive correlation as ψ w gradually decreased. On the other hand, in this period, Stern-Volmer type non-photochemical quenching coefficient (NPQ) and quantum yield of light-induced non-photochemical fluorescence quenching [Y (NPQ)] kept going up, which shows an attempt to dissipate excess energy to avoid damage to plants. When ψ w was below -1.5 MPa, P N continued to decrease linearly, while C i increased and a 'V' model presents the correlation between C i and ψ w by polynomial regression. This implies that, in this period, the drop in photosynthesis activity might be caused by non-stomatal limitation. Fv/Fm, ΦPSII, q P and q L in apple leaves treated with water stress were much lower than in control, while NPQ and Y (NPQ) started to go down. This demonstrates that excess energy might exceed the tolerance ability of apple leaves. Consistent with changes of these parameters, excess energy led to an increase in the production of ROS including H2O2 and O2 •- Although the activities of antioxidant enzymes like catalase (CAT), superoxide dismutase (SOD) and peroxidase (POD) increased dramatically and ascorbate peroxidase (APX) decreased in apple leaves with drought stress, it was still not sufficient to scavenge ROS. Consequently, the accumulation of ROS triggered a reduction of net D1 protein content, a core protein in the PSII reaction center. As D1 is responsible for the photosynthetic electron transport from plastoquinone A (QA) to plastoquinone B (QB), the capacity of PETC between QA and QB was considerably downregulated. The decline of photosynthesis and activity of PETC may result in the shortage of adenosine triphosphate (ATP) and limitation the regeneration of RuBP (J max), a key enzyme in CO2 assimilation. These are all non-stomatal factors and together contributed to decreased CO2 assimilation under severe water stress.

Simulation of chlorophyll fluorescence rise and decay kinetics, and P700-related absorbance changes by using a rule-based kinetic Monte-Carlo method

A model of primary photosynthetic reactions in the thylakoid membrane was developed and its validity was tested by simulating three types of experimental kinetic curves: (1) the light-induced chlorophyll a fluorescence rise (OJIP transients) reflecting the stepwise transition of the photosynthetic electron transport chain from the oxidized to the fully reduced state; (2) the dark relaxation of the flash-induced fluorescence yield attributed to the Q_A^- oxidation kinetics in PSII; and (3) the light-induced absorbance changes near 820 or 705 nm assigned to the redox transitions of P₇₀₀ in PSI. A model was implemented by using a rule-based kinetic Monte-Carlo method and verified by simulating experimental curves under different treatments including photosynthetic inhibitors, heat stress, anaerobic conditions, and very high light intensity.

Interaction of high seawater temperature and light intensity on photosynthetic electron transport of eelgrass (Zostera marina L.)

The interaction of widely recognized causes of eelgrass decline (high seawater temperature and limited light intensity) on photosynthetic electron transport was investigated via chlorophyll fluorescence technique. High seawater temperature combined light intensity significantly increasing the relative maximum electron transport rate (rETR_max); at critical temperature of 30 °C, the rETR_max increased with the enhancement of light intensity, indicating the elevation of overall photosynthetic performance. Based on the magnitude of effect size (η²), light intensity was the predominant factor affecting the performance index (PI_ABS), indicating that photosystem II (PSII) was sensitive to light intensity. Moreover, the donor side was severely damaged as evidenced by the higher decrease amplitude of fast component and its subsequent incomplete recovery. The reaction center exhibited limited flexibility due to the slight decrease amplitude in maximum photochemical quantum yield. In contrast with PSII, photosystem I (PSI) was more sensitive to high seawater temperature, based on the magnitude of η² derived from the maximal decrease in slope. High seawater temperature significantly increased PSI activity, plastoquinol reoxidation capacity, and probability for electron transfer to final PSI electron acceptors. Moreover, it combined elevated light intensity significantly stimulated the activity of cyclic electron flow (CEF) around PSI. Higher activity of both PSI and CEF contributed to balancing the linear electron transport via alleviating the over-reduction of the plastoquinone pool, exhibiting flexible regulation of photosynthetic electron transport at critical temperature. Therefore, limited light intensity decreased the tolerance of eelgrass to critical temperature, which might be a factor contributing factor in the observed decline.

Physiological characterization and allelic diversity of selected drought tolerant traditional rice (Oryza sativa L.) landraces of Koraput, India

Water-deficit stress tolerance in rice is important for maintaining stable yield, especially under rain-fed ecosystem. After a thorough drought-tolerance screening of more than 130 rice genotypes from various regions of Koraput in our previous study, six rice landraces were selected for drought tolerance capacity. These six rice landraces were further used for detailed physiological and molecular assessment under control and simulated drought stress conditions. After imposing various levels of drought stress, leaf photosynthetic rate (P_N), photochemical efficiency of photosystem II (Fv/Fm), SPAD chlorophyll index, membrane stability index and relative water content were found comparable with the drought-tolerant check variety (N22). Compared to the drought-susceptible variety IR64, significant positive attributes and varietal differences were observed for all the above physiological parameters in drought-tolerant landraces. Genetic diversity among the studied rice landraces was assessed using 19 previously reported drought tolerance trait linked SSR markers. A total of 50 alleles with an average of 2.6 per locus were detected at the loci of the 19 markers across studied rice genotypes. The Nei's genetic diversity (He) and the polymorphism information content (PIC) ranged from 0.0 to 0.767 and 0.0 to 0.718, respectively. Seven SSR loci, such as RM324, RM19367, RM72, RM246, RM3549, RM566 and RM515, showed the highest PIC values and are thus, useful in assessing the genetic diversity of studied rice lines for drought tolerance. Based on the result, two rice landraces (Pandkagura and Mugudi) showed the highest similarity index with tolerant check variety. However, three rice landraces (Kalajeera, Machhakanta and Haldichudi) are more diverse and showed highest genetic distance with N22. These landraces can be considered as the potential genetic resources for drought breeding program.

Riboflavin (Vitamin B2) mediated defence induction against bacterial leaf blight: probing through chlorophyll a fluorescence induction O-J-I-P transients

Bacterial leaf blight (BLB) is a serious threat for rice (Oryza sativa L.) cultivation caused by the bacterial pathogen Xanthomonas oryzae pv. oryzae. The pathogen mainly damages the leaf chlorophyllous tissue, resulting in poor photosynthesis and causing up to 50% reductions in grain yield. In the present work, we have compared the structural and functional ability of the chloroplast of three varieties of rice with different degrees of susceptibility (TN1, highly susceptible; IR-20, moderately resistant; DV-85, resistant to BLB) treated with riboflavin (1 and 2mM) and infected with BLB, with chlorophyll fluorescence as a tool. As indicated by the chlorophyll fluorescence technique, the disease progress curve and yield data, riboflavin acted as an effective vitamin for inducing resistance against BLB. Plants treated with riboflavin showed improved PSII activity, more chlorophyll content and higher yield than the diseased plants.