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Liu Z, Heng S, Dai Q, Gao Y, Han Y, Hu L, Liu Y, Lu X, Zhen G. Simultaneous removal of antibiotic resistance genes and improved dewatering ability of waste activated sludge by Fe(II)-activated persulfate oxidation. WATER RESEARCH 2024; 253:121265. [PMID: 38340701 DOI: 10.1016/j.watres.2024.121265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 01/21/2024] [Accepted: 02/04/2024] [Indexed: 02/12/2024]
Abstract
Waste activated sludge properties vary widely with different regions due to the difference in living standards and geographical distribution, making a big challenge to developing a universally effective sludge dewatering technique. The Fe(II)-activated persulfate (S2O82-) oxidation process shows excellent ability to disrupt sludge cells and extracellular polymeric substances (EPS), and release bound water from sludge flocs. In this study, the discrepancies in the physicochemical characteristics of sludge samples from seven representative cities in China (e.g., dewaterability, EPS composition, surface charge, microbial community, relative abundance of antibiotic resistance genes (ARGs), etc.) were investigated, and the role of Fe(II)-S2O82- oxidation in enhancing removal of antibiotic resistance genes and dewatering ability were explored. The results showed significant differences between the EPS distribution and chemical composition of sludge samples due to different treatment processes, effluent sources, and regions. The Fe(II)-S2O82- oxidation pretreatment had a good enhancement of sludge dewatering capacity (up to 76 %). Microbial analysis showed that the microbial community in each sludge varied significantly depending on the types of wastewater, the wastewater treatment processes, and the regions, but Fe(II)-S2O82- oxidation was able to attack and rupture the sludge zoogloea indiscriminately. Genetic analysis further showed that a considerable number of ARGs were detected in all of these sludge samples and that Fe(II)-S2O82- oxidation was effective in removing ARGs by higher than 90 %. The highly active radicals (e.g., SO4-·, ·OH) produced in this process caused drastic damage to sludge microbial cells and DNA stability while liberating the EPS/cell-bound water. Co-occurrence network analysis highlighted a positive correlation between population distribution and ARGs abundance, while variations in microbial communities were linked to regional differences in living standards and level of economic development. Despite these variations, the Fe(II)-S2O82- oxidation consistently achieved excellent performance in both ARGs removal and sludge dewatering. The significant modularity of associations between different microbial communities also confirms its ability to reduce horizontal gene transfer (HGT) by scavenging microbes.
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Affiliation(s)
- Zhaobin Liu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Shiliang Heng
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Qicai Dai
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Yijing Gao
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Yule Han
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Lingtian Hu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Yisheng Liu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Xueqin Lu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China; Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, Shanghai 200241, PR China; Institute of Eco-Chongming (IEC), 3663N. Zhongshan Rd., Shanghai 200062, China
| | - Guangyin Zhen
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China; Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, Shanghai 200241, PR China; Shanghai Institute of Pollution Control and Ecological Security, 1515 North Zhongshan Rd. (No. 2), Shanghai 200092, PR China; Technology Innovation Center for Land Spatial Eco-restoration in Metropolitan Area, Ministry of Natural Resources, 3663N. Zhongshan Road, Shanghai 200062, China.
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Pan D, Chen P, Yang G, Niu R, Bai Y, Cheng K, Huang G, Liu T, Li X, Li F. Fe(II) Oxidation Shaped Functional Genes and Bacteria Involved in Denitrification and Dissimilatory Nitrate Reduction to Ammonium from Different Paddy Soils. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:21156-21167. [PMID: 38064275 DOI: 10.1021/acs.est.3c06337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2023]
Abstract
Microbial nitrate reduction can drive Fe(II) oxidation in anoxic environments, affecting the nitrous oxide emission and ammonium availability. The nitrate-reducing Fe(II) oxidation usually causes severe cell encrustation via chemodenitrification and potentially inhibits bacterial activity due to the blocking effect of secondary minerals. However, it remains unclear how Fe(II) oxidation and subsequent cell encrustation affect the functional genes and bacteria for denitrification and dissimilatory nitrate reduction to ammonium (DNRA). Here, bacteria were enriched from different paddy soils with and without Fe(II) under nitrate-reducing conditions. Fe(II) addition decelerated nitrate reduction and increased NO2- accumulation, due to the rapid Fe(II) oxidation and cell encrustation in the periplasm and on the cell surface. The N2O accumulation was lower in the treatment with Fe(II) and nitrate than that in the treatment with nitrate only, although the proportions of N2O and NH4+ to the reduced NO3- were low (3.25% ∼ 6.51%) at the end of incubation regardless of Fe(II) addition. The dominant bacteria varied from soils under nitrate-reducing conditions, while Fe(II) addition shaped a similar microbial community, including Dechloromonas, Azospira, and Pseudomonas. Fe(II) addition increased the relative abundance of napAB, nirS, norBC, nosZ, and nirBD genes but decreased that of narG and nrfA, suggesting that Fe(II) oxidation favored denitrification in the periplasm and NO2--to-NH4+ reduction in the cytoplasm. Dechloromonas dominated the NO2--to-N2O reduction, while Thauera mediated the periplasmic nitrate reduction and cytoplasmic NO2--to-NH4+ during Fe(II) oxidation. However, Thauera showed much lower abundance than the dominant genera, resulting in slow nitrate reduction and limited NH4+ production. These findings provide new insights into the response of denitrification and DNRA bacteria to Fe(II) oxidation and cell encrustation in anoxic environments.
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Affiliation(s)
- Dandan Pan
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Provincial Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Pengcheng Chen
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Guang Yang
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Rumiao Niu
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Yan Bai
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Provincial Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Kuan Cheng
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Provincial Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Guoyong Huang
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Provincial Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Tongxu Liu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Provincial Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Xiaomin Li
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Fangbai Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Provincial Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
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Tian L, Ou Y, Yan B, Zhu H, Liu H, Cheng L, Jiao P. Synergistic improvement of nitrogen and phosphorus removal in constructed wetlands by the addition of solid iron substrates and ferrous irons. FUNDAMENTAL RESEARCH 2023; 3:890-897. [PMID: 38933005 PMCID: PMC11197743 DOI: 10.1016/j.fmre.2022.10.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 09/13/2022] [Accepted: 10/11/2022] [Indexed: 11/30/2022] Open
Abstract
Sanjiang Plain is intensively used for rice production, and ditch drainage diffuse pollution prevention is crucial. Groundwater, rich in Fe ions, is the main source of irrigation water in this region. In this study, pyrite and zero-valent iron (ZVI) (sponge iron and iron scraps) were used as substrates to identify the synergistic influence of exogenous Fe2+ addition and solid iron substrates on pollutant removal in constructed wetlands. Based on the results, iron substrates hardly improved the ammonia removal, mainly because of the physical structure and oxidation activity. At a hydraulic retention time longer than 8 h, the pollution removal efficiency in the zero-valent iron (ZVI) substrate treatment increased significantly, and the removal of nitrate (NO3 --N) and total phosphorus (TP) in the iron scrap substrate treatment reached about 60% and 70%, respectively. The high-throughput sequencing results showed a significant increase in the abundance of microorganisms involved in denitrification and phosphate accumulation in biofilms on ZVI substrates. The highest diversities of such microorganisms in biofilms on iron scraps were found for denitrifying bacteria (Pseudomonas), nitrate-reducing Fe (II)-oxidizing bacteria (Acidovorax), and Dechloromonas with autotrophic denitrification and phosphate accumulation, with a 43% cumulative abundance. Dechloromonas dominated in the iron sponge substrate treatment. The highest relative abundance of Acidovorax was found in the mixed iron substrate (pyrite, sponge iron, and iron scraps) treatment. The addition of ZVI substrate significantly improved the removal of NO3 --N and TP and reduced the hydraulic retention time through the continuous release of Fe2+ and the promotion of microbial growth. When designing constructed wetlands for treating paddy field drainage, the appropriate addition of iron scrap substrates is recommended to enhance the pollutant removal efficiency and shock load resistance of CWs.
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Affiliation(s)
- Liping Tian
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yang Ou
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- Jilin Provincial Engineering Center of CWs Design in Cold Region & Beautiful Country Construction, Changchun 130102, China
| | - Baixing Yan
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- Jilin Provincial Engineering Center of CWs Design in Cold Region & Beautiful Country Construction, Changchun 130102, China
| | - Hui Zhu
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- Jilin Provincial Engineering Center of CWs Design in Cold Region & Beautiful Country Construction, Changchun 130102, China
| | - Huiping Liu
- College of Plant Protection, Jilin Agricultural University, Changchun 130118, China
| | - Lei Cheng
- College of Plant Protection, Jilin Agricultural University, Changchun 130118, China
| | - Peng Jiao
- College of Resources and Environment, Jilin Agricultural University, Changchun 130118, China
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Tian Q, Gong Y, Liu S, Ji M, Tang R, Kong D, Xue Z, Wang L, Hu F, Huang L, Qin S. Endophytic bacterial communities in wild rice ( Oryza officinalis) and their plant growth-promoting effects on perennial rice. FRONTIERS IN PLANT SCIENCE 2023; 14:1184489. [PMID: 37645460 PMCID: PMC10461003 DOI: 10.3389/fpls.2023.1184489] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Accepted: 07/24/2023] [Indexed: 08/31/2023]
Abstract
Endophytic bacterial microbiomes of plants contribute to the physiological health of the host and its adaptive evolution and stress tolerance. Wild rice possesses enriched endophytic bacteria diversity, which is a potential resource for sustainable agriculture. Oryza officinalis is a unique perennial wild rice species in China with rich genetic resources. However, endophytic bacterial communities of this species and their plant growth-promoting (PGP) traits remain largely unknown. In this study, endophytic bacteria in the root, stem, and leaf tissues of O. officinalis were characterized using 16S rRNA gene Illumina sequencing. Culturable bacterial endophytes were also isolated from O. officinalis tissues and characterized for their PGP traits. The microbiome analysis showed a more complex structure and powerful function of the endophytic bacterial community in roots compared with those in other tissue compartments. Each compartment had its specific endophytic bacterial biomarkers, including Desulfomonile and Ruminiclostridium for roots; Lactobacillus, Acinetobacter, Cutibacterium and Dechloromonas for stems; and Stenotrophomonas, Chryseobacterium, Achromobacter and Methylobacterium for leaves. A total of 96 endophytic bacterial strains with PGP traits of phosphate solubilization, potassium release, nitrogen fixation, 1-aminocyclopropane-1-carboxylate (ACC) deaminase secretion, and siderophore or indole-3-acetic acid (IAA) production were isolated from O. officinalis. Among them, 11 strains identified as Enterobacter mori, E. ludwigii, E. cloacae, Bacillus amyloliquefaciens, B. siamensis, Pseudomonas rhodesiae and Kosakonia oryzae were selected for inoculation of perennial rice based on their IAA production traits. These strains showed promising PGP effects on perennial rice seedlings. They promoted plants to form a strong root system, stimulate biomass accumulation, and increase chlorophyll content and nitrogen uptake, which could fulfil the ecologically sustainable cultivation model of perennial rice. These results provide insights into the bacterial endosphere of O. officinalis and its application potential in perennial rice. There is the prospect of mining beneficial endophytic bacteria from wild rice species, which could rewild the microbiome of cultivated rice varieties and promote their growth.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Fengyi Hu
- Key Laboratory of Biology and Germplasm Innovation of Perennial Rice From Ministry of Agriculture and Rural Affairs, School of Agriculture, Yunnan University, Kunming, Yunnan, China
| | - Liyu Huang
- Key Laboratory of Biology and Germplasm Innovation of Perennial Rice From Ministry of Agriculture and Rural Affairs, School of Agriculture, Yunnan University, Kunming, Yunnan, China
| | - Shiwen Qin
- Key Laboratory of Biology and Germplasm Innovation of Perennial Rice From Ministry of Agriculture and Rural Affairs, School of Agriculture, Yunnan University, Kunming, Yunnan, China
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Gu X, Peng Y, Yan P, Fan Y, Zhang M, Sun S, He S. Microbial response to nitrogen removal driven by combined iron and biomass in subsurface flow constructed wetlands with plants of different ages. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 875:162692. [PMID: 36894080 DOI: 10.1016/j.scitotenv.2023.162692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 02/28/2023] [Accepted: 03/03/2023] [Indexed: 06/18/2023]
Abstract
This study investigated the nitrogen removal enhanced by combined iron scraps and plant biomass, and its microbial response in the wetland with different plant ages and temperatures. The results showed that older plants benefitted the efficiency and stability of nitrogen removal, which could reach 1.97 ± 0.25 g m-2 d-1 in summer and 0.42 ± 0.12 g m-2 d-1 in winter. Plant age and temperature were the main factors determining the microbial community structure. Compared with temperature, plant ages affected more significantly on relative abundance of microorganisms such as Chloroflexi, Nitrospirae, Bacteroidetes and Cyanobacteria, and functional genera for nitrification (e.g., Nitrospira) and iron reduction (e.g., Geothrix). The absolute abundance of total bacterial 16S rRNA ranged from 5.22 × 108 to 2.63 × 109 copies g-1 and presented extremely significant negative correlation to plant age, which would lead to a decline in microbial function on information storage and processing. The quantitative relationship further revealed that the ammonia removal was related to 16S rRNA and AOB amoA, while nitrate removal was controlled by 16S rRNA, narG, norB and AOA amoA jointly. These findings suggested that a mature wetland for nitrogen removal enhancement should focus on aging microbes caused by old plants and possible endogenous pollution.
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Affiliation(s)
- Xushun Gu
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Yuanyuan Peng
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Pan Yan
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Yuanyuan Fan
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Manping Zhang
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Shanshan Sun
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Shengbing He
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China.
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Shi Y, Wei Z, Xu Y, Lu X, Ruan A. Effects of electrochemical intervention on the remediation of black-odorous water: insights into microbial community dynamics and functional shifts in sediments. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2023; 87:2776-2792. [PMID: 37318923 PMCID: wst_2023_169 DOI: 10.2166/wst.2023.169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Black-odorous water is a severe environmental issue that has received continuous attention. The major purpose of the present study was to propose an economical, practical, and pollution-free treatment technology. In this study, the in situ remediation of black-odorous water was conducted by applying different voltages (2.5, 5, and 10 V) to improve oxidation conditions of the surface sediments. The study investigated the effects of voltage intervention on water quality, gas emissions, and microbial community dynamics in surface sediments during the remediation process. The results indicated that the voltage intervention can effectively increase the oxidation-reduction potential (ORP) of the surface sediments and inhibit the emissions of H2S, NH3, and CH4. Moreover, the relative abundances of typical methanogens (Methanosarcina and Methanolobus) and sulfate-reducing bacteria (Desulfovirga) decreased because of the increase in ORP after the voltage treatment. The microbial functions predicted by FAPROTAX also demonstrated the inhibition of methanogenesis and sulfate reduction functions. On the contrary, the total relative abundances of chemoheterotrophic microorganisms (e.g., Dechloromonas, Azospira, Azospirillum, and Pannonibacter) in the surface sediments increased significantly, which led to enhanced biochemical degradability of the black-odorous sediments as well as CO2 emissions.
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Affiliation(s)
- Yingying Shi
- State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China E-mail: ; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Zhipeng Wei
- State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China E-mail: ; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Yaofei Xu
- State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China E-mail: ; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Xiang Lu
- Department of Biosciences, Centre for Biogeochemistry in the Anthropocene, University of Oslo, Oslo 0316, Norway
| | - Aidong Ruan
- State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing 210098, China E-mail: ; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
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Chen D, Feng Q, Zhang Y. Enrichment and response of iron-metabolizing microorganisms and metabolic genes in the contaminated area of stratified stacking coal gangue dumps, Northern China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:63603-63619. [PMID: 37046168 DOI: 10.1007/s11356-023-26775-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 03/28/2023] [Indexed: 05/11/2023]
Abstract
In the Xishan coalfield of northern China, the stratified stacking of soil and gangue was applied to limit the acid pollution from high-sulfur coal gangue. In this study, we found that stratified stacking can effectively neutralize the acidity, with the pH value of gangue-leaching water being 6.02-8.13. In contrast to the acidic contaminated area, most of the microorganisms in the study area sediment were neutrophilic, with the main genera being Arthrobacter, Pseudorhodobacter, Pseudomonas, and Rhodoferax. A variety of iron- and sulfur-metabolizing bacteria was discovered in the gangue-leaching sediment, with the total relative abundance ranging from 4.20 to 23.75%, of which the iron-reducing bacteria (FeRB) accounted for the highest percentage. The distributions of these functional microorganisms in the samples were significantly influenced by Fe and S. The co-occurrence network analysis revealed a significant positive correlation between the iron- and sulfur-metabolizing bacteria in the sediment (93.75%), indicating a strong reciprocal symbiotic relationship between these bacteria. The iron and sulfur metabolism genes in the sediment were predicted and compared based on the Tax4Fun functional prediction method. Results showed that functional genes related to iron metabolism were highly expressed in the gangue-leaching sediment. This study enhances the understanding of iron and sulfur metabolism in gangue-leaching contaminated areas.
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Affiliation(s)
- Di Chen
- Engineering Research Center of Ministry of Education for Mine Ecological Restoration, China University of Mining and Technology, No.1 Daxue Street, Quanshan District, Xuzhou, 221116, People's Republic of China
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, No.1 Daxue Street, Quanshan District, Xuzhou, 221116, People's Republic of China
| | - Qiyan Feng
- Engineering Research Center of Ministry of Education for Mine Ecological Restoration, China University of Mining and Technology, No.1 Daxue Street, Quanshan District, Xuzhou, 221116, People's Republic of China.
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, No.1 Daxue Street, Quanshan District, Xuzhou, 221116, People's Republic of China.
| | - Yun Zhang
- Engineering Research Center of Ministry of Education for Mine Ecological Restoration, China University of Mining and Technology, No.1 Daxue Street, Quanshan District, Xuzhou, 221116, People's Republic of China
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, No.1 Daxue Street, Quanshan District, Xuzhou, 221116, People's Republic of China
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Ma B, Zhang H, Huang T, Chen S, Sun W, Yang W, Niu L, Liu X, Liu H, Pan S, Liu H, Zhang X. Aerobic Denitrification Enhanced by Immobilized Slow-Released Iron/Activated Carbon Aquagel Treatment of Low C/N Micropolluted Water: Denitrification Performance, Denitrifying Bacterial Community Co-occurrence, and Implications. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:5252-5263. [PMID: 36944030 DOI: 10.1021/acs.est.2c08770] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The key limiting factors in the treatment of low C/N micropolluted water bodies are deficient essential electron donors for nitrogen removal processes. An iron/activated carbon aquagel (IACA) was synthesized as a slowly released inorganic electron donor to enhance aerobic denitrification performance in low C/N micropolluted water treatment. The denitrification efficiency in IACA reactors was enhanced by more than 56.72% and the highest of 94.12% was accomplished compared with those of the control reactors. Moreover, the CODMn removal efficiency improved by more than 34.32% in IACA reactors. The Illumina MiSeq sequencing consequence explained that the denitrifying bacteria with facultative denitrification, iron oxidation, and iron reduction function were located in the dominant species niches in the IACA reactors (e.g., Pseudomonas, Leptothrix, and Comamonas). The diversity and richness of the denitrifying bacterial communities were enhanced in the IACA reactors. Network analysis indicated that aerobic denitrifying bacterial consortia in IACA reactors presented a more complicated co-occurrence structure. The IACA reactors presented the potential for long-term denitrification operation. This study affords a pathway to utilize IACA, promoting aerobic denitrification during low C/N micropolluted water body treatment.
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Affiliation(s)
- Ben Ma
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Haihan Zhang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Tinglin Huang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Shengnan Chen
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Wanqiu Yang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Limin Niu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Xiang Liu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Hanyan Liu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Sixuan Pan
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Huan Liu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Xiaoli Zhang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, China
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
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9
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Shen C, Su L, Zhao Y, Liu W, Liu R, Zhang F, Shi Y, Wang J, Tang Q, Yang Y, Bon Man Y, Zhang J. Plants boost pyrrhotite-driven nitrogen removal in constructed wetlands. BIORESOURCE TECHNOLOGY 2023; 367:128240. [PMID: 36332867 DOI: 10.1016/j.biortech.2022.128240] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 10/25/2022] [Accepted: 10/27/2022] [Indexed: 06/16/2023]
Abstract
Pyrrhotite is a promising electron donor for autotrophic denitrification. Using pyrrhotite as the substrate in constructed wetlands (CWs) can enhance the nitrogen removal performance in carbon-limited wastewater treatment. However, the role of plants in pyrrhotite-integrated CW is under debate as the oxygen released from plant roots may destroy the anoxic condition for autotrophic denitrification. This study compared pyrrhotite-integrated CWs with and without plants and identified the effects of plants' presence in nitrogen removal, pyrrhotite oxidized dissolution, and microbial community. The results show that plants enhanced the TN removal significantly (from 41.6 ± 3.9 % to 97.1 ± 2.6 %). Plants can accelerate the PAD in CW through the strengthening of pyrrhotite dissolution. Enriched functional (Thiobacillus and Acidiferrobacter) and a more complex bacterial co-occurrence network has been found in CW with plants. This study identified the role of plants in PAD acceleration, providing an in-depth understanding of pyrrhotite in CW systems.
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Affiliation(s)
- Cheng Shen
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China; Dooge Centre for Water Resources Research, School of Civil Engineering, University College Dublin, Belfield Dublin 4, Ireland
| | - Liti Su
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China
| | - Yaqian Zhao
- Dooge Centre for Water Resources Research, School of Civil Engineering, University College Dublin, Belfield Dublin 4, Ireland; State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, China
| | - Wenbo Liu
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China
| | - Ranbin Liu
- Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies/Beijing Advanced Innovation Center of Future Urban Design, Beijing University of Civil Engineering & Architecture, Beijing 100044, China; Dooge Centre for Water Resources Research, School of Civil Engineering, University College Dublin, Belfield Dublin 4, Ireland
| | - Fuhao Zhang
- Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies/Beijing Advanced Innovation Center of Future Urban Design, Beijing University of Civil Engineering & Architecture, Beijing 100044, China; State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, China
| | - Yun Shi
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China
| | - Jie Wang
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China
| | - Qiuqi Tang
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China
| | - Yan Yang
- Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies/Beijing Advanced Innovation Center of Future Urban Design, Beijing University of Civil Engineering & Architecture, Beijing 100044, China
| | - Yu Bon Man
- Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, The Education University of Hong Kong, 10 Lo Ping Road, Tai Po, Hong Kong SAR, China
| | - Jin Zhang
- Zhejiang Province Key Laboratory of Recycling and Ecological Treatment of Waste Biomass, School of Environment and Natural Resources, Zhejiang University of Science & Technology, Hangzhou, Zhejiang 310023, China.
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10
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Gao W, Liu P, Ye Z, Zhou J, Wang X, Huang X, Deng X, Ma L. Divergent prokaryotic microbial assembly, co-existence patterns and functions in surrounding river sediments of a Cu-polymetallic deposit in Tibet. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 851:158192. [PMID: 35988602 DOI: 10.1016/j.scitotenv.2022.158192] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 08/16/2022] [Accepted: 08/17/2022] [Indexed: 06/15/2023]
Abstract
The exploitation of polymetallic deposits produces large amounts of mine drainage, which poses great challenges to the surrounding aquatic ecosystem. However, the prokaryotic microbial community assembly and co-existence patterns in the polluted area are poorly understood, especially in high-altitude localities. Herein, we investigated the prokaryotic microbial assembly, co-existence patterns and their potential functional responses in surrounding river sediments of a Cu-polymetallic deposit in Tibet. The sediments from mine drainage and surrounding tributaries exhibited distinct geochemical gradients, especially the changes in Cu content. The microbial community structure changed significantly, accompanied by decreased richness and diversity with increased Cu content. Interestingly, the relative abundances of some potential functional bacteria (e.g., Planctomycetota) actually increased as the Cu levels raised. In low contaminated area, ecological drift was the most important assembly process, whereas deterministic processes gained importance with pollution levels. Meanwhile, negative interactions in co-occurrence networks were more frequent with higher modularity and reduced keystone taxa in high contaminated area. Notably, the functions related to ABC transporters and quorum sensing (QS) were more abundant with high Cu content, which helped bacteria work together to cope with the stressful environment. Taken together, the physicochemical gradients dominated by Cu content drove the distribution, assembly and co-existence patterns of microbial communities in surrounding river sediments of a Cu-polymetallic deposit. These findings provide new insights into the maintenance mechanisms of prokaryotic microbial communities in response to heavy metal stress at high altitudes.
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Affiliation(s)
- Weikang Gao
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Peng Liu
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Zhihang Ye
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Jianwei Zhou
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Xingjie Wang
- Institute of Geological Survey, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Xinping Huang
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Xiaoyu Deng
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China
| | - Liyuan Ma
- Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, School of Environmental Studies, China University of Geosciences, Wuhan 430074, Hubei, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, Hubei, China.
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11
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Chen Y, Li X, Liu T, Li F, Sun W, Young LY, Huang W. Metagenomic analysis of Fe(II)-oxidizing bacteria for Fe(III) mineral formation and carbon assimilation under microoxic conditions in paddy soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 851:158068. [PMID: 35987227 DOI: 10.1016/j.scitotenv.2022.158068] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 08/08/2022] [Accepted: 08/12/2022] [Indexed: 06/15/2023]
Abstract
Microbially mediated Fe(II) oxidation is prevalent and thought to be central to many biogeochemical processes in paddy soils. However, we have limited insights into the Fe(II) oxidation process in paddy fields, considered the world's largest engineered wetland, where microoxic conditions are ubiquitous. In this study, microaerophilic Fe(II) oxidizing bacteria (FeOB) from paddy soil were enriched in gradient tubes with FeS, FeCO3, and Fe3(PO4)2 as iron sources to investigate their capacity for Fe(II) oxidation and carbon assimilation. Results showed that the highest rate of Fe(II) oxidation (k = 0.836 mM d-1) was obtained in the FeCO3 tubes, and cells grown in the Fe3(PO4)2 tubes yielded maximum assimilation amounts of 13C-NaHCO3 of 1.74% on Day 15. Amorphous Fe(III) oxides were found in all the cell bands with iron substrates as a result of microbial Fe(II) oxidation. Metagenomics analysis of the enriched microbes targeted genes encoding iron oxidase Cyc2, oxygen-reducing terminal oxidase, and ribulose-bisphosphate carboxylase, with results indicated that the potential Fe(II) oxidizers include nitrate-reducing FeOB (Dechloromonas and Thiobacillus), Curvibacter, and Magnetospirillum. By combining cultivation-dependent and metagenomic approaches, our results found a number of FeOB from paddy soil under microoxic conditions, which provide insight into the complex biogeochemical interactions of iron and carbon within paddy fields. The contribution of the FeOB to the element cycling in rice-growing regions deserves further investigation.
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Affiliation(s)
- Yating Chen
- Institute for Disaster Management and Reconstruction, Sichuan University-Hong Kong Polytechnic University, Chengdu 610207, China
| | - Xiaomin Li
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, China.
| | - Tongxu Liu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Fangbai Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China.
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Lily Y Young
- Department of Environmental Sciences, Rutgers University, New Brunswick, NJ 08901, USA
| | - Weilin Huang
- Department of Environmental Sciences, Rutgers University, New Brunswick, NJ 08901, USA
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12
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Tan M, Wu H, Yan S, Jiang D. Evaluating the Toxic Effects of Tannic Acid Treatment on Hyphantria cunea Larvae. INSECTS 2022; 13:872. [PMID: 36292820 PMCID: PMC9604457 DOI: 10.3390/insects13100872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 09/19/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
To increase the development potential of botanical pesticides, it is necessary to expand the toxicology research on plant secondary metabolites. Herein, the Hyphantria cunea larvae were exposed to tannic acid concentrations consistent with those found in larch needles, and, subsequently, the growth and nutrient utilization, oxidative damage, and detoxification abilities in the larval midgut, as well as the changes in the gut microbiome, were analyzed. Our results revealed that tannic acid treatment significantly increased the mortality of H. cunea larvae and inhibited larval growth and food utilization. The contents of malondialdehyde and hydrogen peroxide in the larval midgut were significantly elevated in the treatment group, along with a significant decrease in the activities of antioxidant enzymes and detoxifying enzymes. However, the non-enzymatic antioxidants showed a significant increase in the tannic acid-treated larvae. From gut microbiome analysis in the treatment group, the abundance of gut microbiota related to toxin degradation and nutrient metabolism was significantly reduced, and the enrichment analysis also suggested that all pathways related to nutritional and detoxification metabolism were substantially inhibited. Taken together, tannic acid exerts toxic effects on H. cunea larvae at multiple levels and is a potential botanical pesticide for the control of H. cunea larvae.
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Affiliation(s)
- Mingtao Tan
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Hongfei Wu
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Shanchun Yan
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
| | - Dun Jiang
- School of Forestry, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China
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13
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Li MJ, Wei MY, Fan XT, Zhou GW. Underestimation about the Contribution of Nitrate Reducers to Iron Cycling Indicated by Enterobacter Strain. Molecules 2022; 27:molecules27175581. [PMID: 36080348 PMCID: PMC9457790 DOI: 10.3390/molecules27175581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 08/19/2022] [Accepted: 08/25/2022] [Indexed: 11/18/2022] Open
Abstract
Nitrate-reducing iron(II) oxidation (NRFO) has been intensively reported in various bacteria. Iron(II) oxidation is found to be involved in both enzymatic and chemical reactions in nitrate-reducing Fe(II)-oxidizing microorganisms (NRFOMs). However, little is known about the relative contribution of biotic and abiotic reactions to iron(II) oxidation for the common nitrate reducers during the NRFO process. In this study, the typical nitrate reducers, four Enterobacter strains E. hormaechei, E. tabaci, E. mori and E. asburiae, were utilized as the model microorganisms. The comparison of the kinetics of nitrate, iron(II) and nitrite and N2O production in setups with and without iron(II) indicates a mixture of enzymatic and abiotic oxidation of iron(II) in all four Enterobacter strains. It was estimated that 22−29% of total oxidized iron(II) was coupled to microbial nitrate reduction by E. hormaechei, E. tabaci, E. mori, and E. asburiae. Enterobacter strains displayed an metabolic inactivity with heavy iron(III) encrustation on the cell surface in the NRFOmedium during days of incubation. Moreover, both respiratory and periplasmic nitrate-reducing genes are encoded by genomes of Enterobacter strains, suggesting that cell encrustation may occur with periplasmic iron(III) oxide precipitation as well as the surface iron(II) mineral coating for nitrate reducers. Overall, this study clarified the potential role of nitrate reducers in the biochemical cycling of iron under anoxic conditions, in turn, re-shaping their activity during denitrification because of cell encrustation with iron(III) minerals.
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Affiliation(s)
- Ming-Jun Li
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, China
| | - Meng-Yun Wei
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Xiao-Ting Fan
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Guo-Wei Zhou
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, China
- Correspondence:
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14
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Chakraborty A, Suchy M, Hubert CRJ, Ryan MC. Vertical stratification of microbial communities and isotope geochemistry tie groundwater denitrification to sampling location within a nitrate-contaminated aquifer. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 820:153092. [PMID: 35038526 DOI: 10.1016/j.scitotenv.2022.153092] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 12/29/2021] [Accepted: 01/09/2022] [Indexed: 06/14/2023]
Abstract
Nitrate pollution is a major threat to groundwater quality in agricultural areas. Natural attenuation of nitrate in contaminated aquifers is mediated by denitrifying microbial populations in anoxic environments. Vertical distribution of denitrifying microbial communities in aquifers is greatly influenced by groundwater redox conditions, local hydrogeological parameters, and seasonal variability in groundwater flow and recharge. In this study, we investigated groundwater geochemistry and the composition of bacterial and archaeal communities with increasing depth in a shallow nitrate-contaminated aquifer in British Columbia, Canada. High-resolution passive diffusion sampling was conducted to collect groundwater at 10-cm intervals from 4 to 20 m below ground surface (mbgs) in the aquifer. Geochemical analyses of major ions indicated a general shift in the groundwater chemistry below 16 mbgs including decreasing chloride concentrations that suggest two-end member mixing of shallow and deep groundwater with different chemistries. A redoxcline was further observed within a 2 m transition zone at 18-20 mbgs characterized by sharp declines in nitrate concentrations and increases in sulfate and total inorganic carbon. Excursions in δ15N-NO3- and δ18O-NO3- in the same depth interval are consistent with denitrification, and a concomitant decrease in δ34S-SO42- suggested that denitrification was coupled to sulfide or sulfur oxidation. Microbial communities within this depth interval were significantly dissimilar to those above and below, featuring putative lithotrophic denitrifying bacteria belonging to the genera Sulfurifustis, Sulfuritalea and Sulfuricella. These lineages were detected in greatest abundance at 19 mbgs while the abundances of putative heterotrophic sulfate-reducing bacteria belonging to the genus Desulfosporosinus were greatest at 20 mbgs. In addition to help distinguish denitrification from mixing-induced changes in groundwater chemistry, the above observed vertical stratification of the microbial key players connects nitrate removal to the locations of the aquifer sampled.
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Affiliation(s)
- Anirban Chakraborty
- Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
| | - Martin Suchy
- Environment and Climate Change Canada, Vancouver, British Columbia, Canada
| | - Casey R J Hubert
- Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada
| | - M Cathryn Ryan
- Department of Geoscience, University of Calgary, Calgary, Alberta, Canada
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15
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Salinity Impact on Composition and Activity of Nitrate-Reducing Fe(II)-Oxidizing Microorganisms in Saline Lakes. Appl Environ Microbiol 2022; 88:e0013222. [PMID: 35499328 DOI: 10.1128/aem.00132-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Nitrate-reducing Fe(II)-oxidizing (NRFeOx) microorganisms contribute to nitrogen, carbon, and iron cycling in freshwater and marine ecosystems. However, NRFeOx microorganisms have not been investigated in hypersaline lakes, and their identity, as well as their activity in response to salinity, is unknown. In this study, we combined cultivation-based most probable number (MPN) counts with Illumina MiSeq sequencing to analyze the abundance and community compositions of NRFeOx microorganisms enriched from five lake sediments with different salinities (ranging from 0.67 g/L to 346 g/L). MPN results showed that the abundance of NRFeOx microorganisms significantly (P < 0.05) decreased with increasing lake salinity, from 7.55 × 103 to 8.09 cells/g dry sediment. The community composition of the NRFeOx enrichment cultures obtained from the MPNs differed distinctly among the five lakes and clustered with lake salinity. Two stable enrichment cultures, named FeN-EHL and FeN-CKL, were obtained from microcosm incubations of sediment from freshwater Lake Erhai and hypersaline Lake Chaka. The culture FeN-EHL was dominated by genus Gallionella (68.4%), while the culture FeN-CKL was dominated by genus Marinobacter (71.2%), with the former growing autotrophically and the latter requiring an additional organic substrate (acetate) and Fe(II) oxidation, caused to a large extent by chemodenitrification [reaction of nitrite with Fe(II)]. Short-range ordered Fe(III) (oxyhydr)oxides were the product of Fe(II) oxidation, and the cells were partially attached to or encrusted by the formed iron minerals in both cultures. In summary, different types of interactions between Fe(II) and nitrate-reducing bacteria may exist in freshwater and hypersaline lakes, i.e., autotrophic NRFeOx and chemodenitrification in freshwater and hypersaline environments, respectively. IMPORTANCE NRFeOx microorganisms are globally distributed in various types of environments and play a vital role in iron transformation and nitrate and heavy metal removal. However, most known NRFeOx microorganisms were isolated from freshwater and marine environments, while their identity and activity under hypersaline conditions remain unknown. Here, we demonstrated that salinity may affect the abundance, identity, and nutrition modes of NRFeOx microorganisms. Autotrophy was only detectable in a freshwater lake but not in the saline lake investigated. We enriched a mixotrophic culture capable of nitrate-reducing Fe(II) oxidation from hypersaline lake sediments. However, Fe(II) oxidation was probably caused by abiotic nitrite reduction (chemodenitrification) rather than by a biologically mediated process. Consequently, our study suggests that in hypersaline environments, Fe(II) oxidation is largely caused by chemodentrification initiated by nitrite formation by chemoheterotrophic bacteria, and additional experiments are needed to demonstrate whether or to what extent Fe(II) is enzymatically oxidized.
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16
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Singh D, Sinha RK, Singh P, Roy N, Mukherjee S. Astrobiological Potential of Fe/Mg Smectites with Special Emphasis on Jezero Crater, Mars 2020 Landing Site. ASTROBIOLOGY 2022; 22:579-597. [PMID: 35171004 DOI: 10.1089/ast.2021.0013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Life is known to adapt in accordance with its surrounding environment and sustainable resources available to it. Since harsh conditions would have precluded any possible aerobic evolution of life at the martian surface, it is plausible that martian life, should it exist, would have evolved in such a way as to derive energy from more optimum resources. Iron is one of the most abundant elements present in the martian crust and occurs at about twice the amount present on Earth. Clay minerals contribute to about half the iron found in soils and sediments. On Earth, clay acts as an electron donor as well as an acceptor in the carbon cycles and thereby supports a wide variety of metabolic reactions. In this context, we consider the potential of Fe/Mg smectites, one of the most widely reported hydrated minerals on Mars, for preservation of macro- and microscopic biosignatures. We proceed by understanding the environmental conditions during the formation of smectites and various microbes and metabolic processes associated with them as indicated in Earth-based studies. We also explore the possibility of biosignatures and their identification within the Mars 2020 landing site (Jezero Crater) by using the astrobiological payloads on board the Perseverance rover.
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Affiliation(s)
- Deepali Singh
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India
| | | | - Priyadarshini Singh
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Nidhi Roy
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Saumitra Mukherjee
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India
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17
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Wang Y, Mairinger W, Raj SJ, Yakubu H, Siesel C, Green J, Durry S, Joseph G, Rahman M, Amin N, Hassan MZ, Wicken J, Dourng D, Larbi E, Adomako LAB, Senayah AK, Doe B, Buamah R, Tetteh-Nortey JNN, Kang G, Karthikeyan A, Roy S, Brown J, Muneme B, Sene SO, Tuffuor B, Mugambe RK, Bateganya NL, Surridge T, Ndashe GM, Ndashe K, Ban R, Schrecongost A, Moe CL. Quantitative assessment of exposure to fecal contamination in urban environment across nine cities in low-income and lower-middle-income countries and a city in the United States. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 763:143007. [PMID: 34718001 DOI: 10.1016/j.scitotenv.2020.143007] [Citation(s) in RCA: 48] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 10/08/2020] [Accepted: 10/08/2020] [Indexed: 05/23/2023]
Abstract
BACKGROUND During 2014 to 2019, the SaniPath Exposure Assessment Tool, a standardized set of methods to evaluate risk of exposure to fecal contamination in the urban environment through multiple exposure pathways, was deployed in 45 neighborhoods in ten cities, including Accra and Kumasi, Ghana; Vellore, India; Maputo, Mozambique; Siem Reap, Cambodia; Atlanta, United States; Dhaka, Bangladesh; Lusaka, Zambia; Kampala, Uganda; Dakar, Senegal. OBJECTIVE Assess and compare risk of exposure to fecal contamination via multiple pathways in ten cities. METHODS In total, 4053 environmental samples, 4586 household surveys, 128 community surveys, and 124 school surveys were collected. E. coli concentrations were measured in environmental samples as an indicator of fecal contamination magnitude. Bayesian methods were used to estimate the distributions of fecal contamination concentration and contact frequency. Exposure to fecal contamination was estimated by the Monte Carlo method. The contamination levels of ten environmental compartments, frequency of contact with those compartments for adults and children, and estimated exposure to fecal contamination through any of the surveyed environmental pathways were compared across cities and neighborhoods. RESULTS Distribution of fecal contamination in the environment and human contact behavior varied by city. Universally, food pathways were the most common dominant route of exposure to fecal contamination across cities in low-income and lower-middle-income countries. Risks of fecal exposure via water pathways, such as open drains, flood water, and municipal drinking water, were site-specific and often limited to smaller geographic areas (i.e., neighborhoods) instead of larger areas (i.e., cities). CONCLUSIONS Knowledge of the relative contribution to fecal exposure from multiple pathways, and the environmental contamination level and frequency of contact for those "dominant pathways" could provide guidance for Water, Sanitation, and Hygiene (WASH) programming and investments and enable local governments and municipalities to improve intervention strategies to reduce the risk of exposure to fecal contamination.
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Affiliation(s)
- Yuke Wang
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.
| | - Wolfgang Mairinger
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Suraja J Raj
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Habib Yakubu
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Casey Siesel
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Jamie Green
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Sarah Durry
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - George Joseph
- Water Global Practice, The World Bank, Washington, DC, USA
| | - Mahbubur Rahman
- Environmental Interventions Unit, Infectious Disease Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Nuhu Amin
- Environmental Interventions Unit, Infectious Disease Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | | | | | | | - Eugene Larbi
- Training Research and Networking for Development (TREND), Accra, Ghana
| | | | | | - Benjamin Doe
- Training Research and Networking for Development (TREND), Accra, Ghana
| | - Richard Buamah
- Department of Civil Engineering, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | | | - Gagandeep Kang
- Wellcome Research Laboratory, Christian Medical College, Vellore, India
| | - Arun Karthikeyan
- Wellcome Research Laboratory, Christian Medical College, Vellore, India
| | - Sheela Roy
- Wellcome Research Laboratory, Christian Medical College, Vellore, India
| | - Joe Brown
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Bacelar Muneme
- Water Supply and Mapping, WE Consult, Maputo, Mozambique
| | - Seydina O Sene
- Initiative Prospective Agricole et Rurale (IPAR), Dakar, Senegal
| | - Benedict Tuffuor
- Training Research and Networking for Development (TREND), Accra, Ghana
| | - Richard K Mugambe
- Department of Disease Control and Environmental Health, Makerere University School of Public Health, Kampala, Uganda
| | - Najib Lukooya Bateganya
- Department of Environment and Public Health, Kampala Capital City Authority, Kampala, Uganda
| | - Trevor Surridge
- Deutsche Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH, Lusaka, Zambia
| | | | - Kunda Ndashe
- Department of Environmental Health, Faculty of Health Science, Lusaka Apex Medical University, Lusaka, Zambia
| | - Radu Ban
- Bill & Melinda Gates Foundation, Seattle, WA, USA
| | | | - Christine L Moe
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
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18
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Zhang L, Jiang M, Zhou S. Conversion of nitrogen and carbon in enriched paddy soil by denitrification coupled with anammox in a bioelectrochemical system. J Environ Sci (China) 2022; 111:197-207. [PMID: 34949349 DOI: 10.1016/j.jes.2021.03.033] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Revised: 03/15/2021] [Accepted: 03/15/2021] [Indexed: 06/14/2023]
Abstract
The aim of this study is to investigate conversion of nitrogen and COD in enriched paddy soil by nitrification coupled with anammox process in a dual chamber bioelectrochemical system. The paddy soil was enriched for denitrification coupled with anammox by microbial consortia and was acclimatized in the cathodic chamber of microbial fuel cells (MFCs). The bioelectrochemical systems were treated with different ammonium concentrations in the cathodic chamber: the MFC with low concentration ammonium (LA-MFC, 50 mg/L ammonium), the MFC with medium concentration ammonium (MA-MFC, 500 mg/L ammonium), and MFC with high concentration ammonium (HA-MFC, 1000 mg/L ammonium), and the initial COD in the anodic chamber was 1200 mg/L. The CK treatments were conducted with 1000 mg/L ammonium under the same conditions, except without inoculum in the cathode chamber. The consumption rate of ammonium in the cathodic chambers of CK, LA-MFC, MA-MFC, and HA-MFC were 9%, 64%, 84%, and 84%, respectively. The degradation rate for COD achieved in the anode chambers of CK, LA-MFC, MA-MFC, and HA-MFC were 70%, 86%, 93%, and 93%, respectively. The analysis of the microbial community of three treated MFCs in the cathode chamber indicated that the nitrification-denitrification process occurs in the cathode chamber. The dominant species for nitrification was Nitrospira, and the dominant species for denitrification were Denitratisoma, Dechloromonas, and Candidatus_Competibacter. Moreover, anammox process also observed in the cathode chamber. The functional genes nirS/K, hzsB, and 16S rDNA were assessed by qPCR analysis, and the results confirmed the presence of denitrification-coupled anammox in the cathodic chamber.
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Affiliation(s)
- Luan Zhang
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Minghe Jiang
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shungui Zhou
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
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19
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Yu X, Yu K, Liao Z, Chen B, Deng C, Yu J, Yao Q, Qin Z, Liang J. Seasonal fluctuations in symbiotic bacteria and their role in environmental adaptation of the scleractinian coral Acropora pruinosa in high-latitude coral reef area of the South China Sea. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 792:148438. [PMID: 34153755 DOI: 10.1016/j.scitotenv.2021.148438] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 06/09/2021] [Accepted: 06/09/2021] [Indexed: 06/13/2023]
Abstract
Coral-associated bacterial communities are paramount for coral ecosystems and holobiont health. However, the role of symbiotic bacteria in the adaptation of high-latitude corals to seasonal fluctuations remains underexplored. Therefore, we used 16S rRNA-based high-throughput sequencing to analyze the symbiotic bacterial diversity, composition, and core bacterial community in high-latitude coral and explored the seasonal fluctuation characteristics of symbiotic bacterial communities. We found that bacterial richness and α-diversity changed significantly across different seasons. Additionally, the community structure recombined seasonally, with different dominant bacterial phyla and genera in different seasons. However, the symbiotic bacterial community structures of Acropora pruinosa in winter and spring were similar. Proteobacteria were the dominant bacteria in spring, autumn, and winter. In summer, the dominant bacterial taxa were Bacteroidota and Proteobacteria. Ralstonia was the dominant bacterial genus in spring and winter, whereas in autumn, BD1-7_clade was dominant. Linear discriminant analysis effect size identified 20 abundant genera between the different groups. Core microbiome analysis revealed that 12 core bacterial operational taxonomic units were associated with A. pruinosa in all seasons, seven of which varied with the seasons, changing between dominant and rare. Distance-based redundancy and variation partitioning analyses revealed that sea surface temperature was the major contributor of variation in the microbial community structure. We hypothesized that the high diversity and abundance of symbiotic bacteria and the increase in Prosthecochloris abundance in coral in summer can help A. pruinosa maintain its physiological functions, ameliorating the negative physiological effects of the decrease in Symbiodiniaceae density under high-temperature stress. Thus, the rapid reorganization of the symbiotic bacterial community structure and core microflora in different seasons may allow the corals to adapt to large seasonal environmental fluctuations. In conclusion, seasonal variation of bacteria plays an important role in coral adaptation to large environmental fluctuations.
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Affiliation(s)
- Xiaopeng Yu
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Kefu Yu
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), China.
| | - Zhiheng Liao
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Biao Chen
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Chuanqi Deng
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Jiaoyang Yu
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Qiucui Yao
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Zhenjun Qin
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
| | - Jiayuan Liang
- Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Coral Reef Research Center of China, School of Marine Sciences, Guangxi University, Nanning, China
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20
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Nitrate Removal by a Novel Lithoautotrophic Nitrate-Reducing, Iron(II)-Oxidizing Culture Enriched from a Pyrite-Rich Limestone Aquifer. Appl Environ Microbiol 2021; 87:e0046021. [PMID: 34085863 DOI: 10.1128/aem.00460-21] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Nitrate removal in oligotrophic environments is often limited by the availability of suitable organic electron donors. Chemolithoautotrophic bacteria may play a key role in denitrification in aquifers depleted in organic carbon. Under anoxic and circumneutral pH conditions, iron(II) was hypothesized to serve as an electron donor for microbially mediated nitrate reduction by Fe(II)-oxidizing (NRFeOx) microorganisms. However, lithoautotrophic NRFeOx cultures have never been enriched from any aquifer, and as such, there are no model cultures available to study the physiology and geochemistry of this potentially environmentally relevant process. Using iron(II) as an electron donor, we enriched a lithoautotrophic NRFeOx culture from nitrate-containing groundwater of a pyrite-rich limestone aquifer. In the enriched NRFeOx culture that does not require additional organic cosubstrates for growth, within 7 to 11 days, 0.3 to 0.5 mM nitrate was reduced and 1.3 to 2 mM iron(II) was oxidized, leading to a stoichiometric NO3-/Fe(II) ratio of 0.2, with N2 and N2O identified as the main nitrate reduction products. Short-range ordered Fe(III) (oxyhydr)oxides were the product of iron(II) oxidation. Microorganisms were observed to be closely associated with formed minerals, but only few cells were encrusted, suggesting that most of the bacteria were able to avoid mineral precipitation at their surface. Analysis of the microbial community by long-read 16S rRNA gene sequencing revealed that the culture is dominated by members of the Gallionellaceae family that are known as autotrophic, neutrophilic, and microaerophilic iron(II) oxidizers. In summary, our study suggests that NRFeOx mediated by lithoautotrophic bacteria can lead to nitrate removal in anthropogenically affected aquifers. IMPORTANCE Removal of nitrate by microbial denitrification in groundwater is often limited by low concentrations of organic carbon. In these carbon-poor ecosystems, nitrate-reducing bacteria that can use inorganic compounds such as Fe(II) (NRFeOx) as electron donors could play a major role in nitrate removal. However, no lithoautotrophic NRFeOx culture has been successfully isolated or enriched from this type of environment, and as such, there are no model cultures available to study the rate-limiting factors of this potentially important process. Here, we present the physiology and microbial community composition of a novel lithoautotrophic NRFeOx culture enriched from a fractured aquifer in southern Germany. The culture is dominated by a putative Fe(II) oxidizer affiliated with the Gallionellaceae family and performs nitrate reduction coupled to Fe(II) oxidation leading to N2O and N2 formation without the addition of organic substrates. Our analyses demonstrate that lithoautotrophic NRFeOx can potentially lead to nitrate removal in nitrate-contaminated aquifers.
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21
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Saha A, Mohapatra B, Kazy SK, Sar P. Variable response of arsenic contaminated groundwater microbial community to electron acceptor regime revealed by microcosm based high-throughput sequencing approach. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2021; 56:804-817. [PMID: 34284694 DOI: 10.1080/10934529.2021.1930448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 05/10/2021] [Accepted: 05/11/2021] [Indexed: 06/13/2023]
Abstract
Arsenic (As) mobilization in alluvial aquifers is facilitated by microbially catalyzed redox transformations that depend on the availability of electron acceptors (EAs). In this study, the response of an As-contaminated groundwater microbial community from West Bengal, India towards varied EAs was elucidated through microcosm based 16S rRNA gene amplicon sequencing. Acinetobacter, Deinococcus, Nocardioides, etc., and several unclassified bacteria (Ignavibacteria) and archaea (Bathyarchaeia, Micrarchaeia) previously not reported from As-contaminated groundwater of West Bengal, characterized the groundwater community. Distinct shifts in community composition were observed in response to various EAs. Enrichment of operational taxonomic units (OTUs) affiliated to Denitratisoma (NO3-), Spirochaetaceae (Mn4+), Deinococcus (As5+), Ruminiclostridium (Fe3+), Macellibacteroides (SO42-), Holophagae-Subgroup 7 (HCO3-), Dechloromonas and Geobacter (EA mixture) was noted. Alternatively, As3+ amendment as electron donor allowed predominance of Rhizobium. Taxonomy based functional profiling highlighted the role of chemoorganoheterotrophs capable of concurrent reduction of NO3-, Fe3+, SO42-, and As biotransformation in As-contaminated groundwater of West Bengal. Our analysis revealed two major aspects of the community, (a) taxa selective toward responding to the EAs, and (b) multifaceted nature of taxa appearing in abundance in response to multiple substrates. Thus, the results emphasized the potential of microbial community members to influence the biogeochemical cycling of As and other dominant anions/cations.
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Affiliation(s)
- Anumeha Saha
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
| | - Balaram Mohapatra
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
| | - Sufia Khannam Kazy
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal, India
| | - Pinaki Sar
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
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22
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Sun S, Gu X, Zhang M, Tang L, He S. Response mechanism of different electron donors for treating secondary effluent in ecological floating bed. BIORESOURCE TECHNOLOGY 2021; 332:125083. [PMID: 33826983 DOI: 10.1016/j.biortech.2021.125083] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Revised: 03/23/2021] [Accepted: 03/25/2021] [Indexed: 06/12/2023]
Abstract
Electron donors have been widely used to improve denitrification performance. However, it is controversial which electron donor could be chosen. In this study, three electron donors were used to improve nitrogen removal from ecological floating beds (EFBs). The results showed that TN removal efficiency was 49-80%, 46-81%, and 45-79% in EFB-C (sodium acetate), EFB-S (sodium thiosulfate), EFB-Fe (iron scraps), respectively. Nitrification was limited in EFB-C and EFB-S while denitrification in EFB-Fe. The TN removal in the three EFBs were almost equivalent when HRT was 3 days. Lowest CH4 and N2O emissions were measured in EFB-Fe. Nitrifying and denitrifying bacteria were mainly concentrated in the root rhizospheres while iron cycle related and anammox bacteria were mainly concentrated on iron scraps surface. Heterotrophic denitrification and autotrophic denitrification were mainly attributed to TN removal in EFB-C and EFB-S, respectively. Autotrophic, heterotrophic denitrification and anammox contributed to TN removal in EFB-Fe.
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Affiliation(s)
- Shanshan Sun
- School of Environmental Science and Engineering, Shanghai Jiaotong University, Shanghai 200240, PR China
| | - Xushun Gu
- School of Environmental Science and Engineering, Shanghai Jiaotong University, Shanghai 200240, PR China
| | - Manping Zhang
- School of Environmental Science and Engineering, Shanghai Jiaotong University, Shanghai 200240, PR China
| | - Li Tang
- Shanghai Engineering Research Center of Landscape Water Environment, Shanghai 200031, PR China; Shanghai Landscape Architecture Design Institute , Shanghai 200031, PR China
| | - Shengbing He
- School of Environmental Science and Engineering, Shanghai Jiaotong University, Shanghai 200240, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 20092, PR China; Shanghai Engineering Research Center of Landscape Water Environment, Shanghai 200031, PR China.
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23
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Zhang S, Amanze C, Sun C, Zou K, Fu S, Deng Y, Liu X, Liang Y. Evolutionary, genomic, and biogeographic characterization of two novel xenobiotics-degrading strains affiliated with Dechloromonas. Heliyon 2021; 7:e07181. [PMID: 34159268 PMCID: PMC8203704 DOI: 10.1016/j.heliyon.2021.e07181] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 03/11/2021] [Accepted: 05/27/2021] [Indexed: 12/26/2022] Open
Abstract
Xenobiotics are generally known as man-made refractory organic pollutants widely distributed in various environments. For exploring the bioremediation possibility of xenobiotics, two novel xenobiotics-degrading strains affiliated with Azonexaceae were isolated. We report here the phylogenetics, genome, and geo-distribution of a novel and ubiquitous Azonexaceae species that primarily joins in the cometabolic process of some xenobiotics in natural communities. Strains s22 and t15 could be proposed as a novel species within Dechloromonas based on genomic and multi-phylogenetic analysis. Pan-genome analysis showed that the 63 core genes in Dechloromonas include genes for dozens of metabolisms such as nitrogen fixation protein (nifU), nitrogen regulatory protein (glnK), dCTP deaminase, C4-dicarboxylate transporter, and fructose-bisphosphate aldolase. Strains s22 and t15 have the ability to metabolize nitrogen, including nitrogen fixation, NirS-dependent denitrification, and dissimilatory nitrate reduction. Moreover, the novel species possesses the EnvZ-OmpR two-component system for controlling osmotic stress and QseC-QseB system for quorum sensing to rapidly sense environmental changes. It is intriguing that this new species has a series of genes for the biodegradation of some xenobiotics such as azathioprine, 6-Mercaptopurine, trinitrotoluene, chloroalkane, and chloroalkene. Specifically, glutathione S-transferase (GST) and 4-oxalocrotonate tautomerase (praC) in this novel species play important roles in the detoxification metabolism of some xenobiotics like dioxin, trichloroethene, chloroacetyl chloride, benzo[a]pyrene, and aflatoxin B1. Using data from GenBank, DDBJ and EMBL databases, we also demonstrated that members of this novel species were found globally in plants (e.g. rice), guts (e.g. insect), pristine and contaminated regions. Given these data, Dechloromonas sp. strains s22 and t15 take part in the biodegradation of some xenobiotics through key enzymes.
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Affiliation(s)
- Shuangfei Zhang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Charles Amanze
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Chongran Sun
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Kai Zou
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Shaodong Fu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Yan Deng
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Xueduan Liu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
| | - Yili Liang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, Hunan, China
- Corresponding author.
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24
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Berger S, Shaw DR, Berben T, Ouboter HT, In 't Zandt MH, Frank J, Reimann J, Jetten MSM, Welte CU. Current production by non-methanotrophic bacteria enriched from an anaerobic methane-oxidizing microbial community. Biofilm 2021; 3:100054. [PMID: 34308332 PMCID: PMC8258643 DOI: 10.1016/j.bioflm.2021.100054] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 04/12/2021] [Accepted: 05/19/2021] [Indexed: 12/21/2022] Open
Abstract
In recent years, the externalization of electrons as part of respiratory metabolic processes has been discovered in many different bacteria and some archaea. Microbial extracellular electron transfer (EET) plays an important role in many anoxic natural or engineered ecosystems. In this study, an anaerobic methane-converting microbial community was investigated with regard to its potential to perform EET. At this point, it is not well-known if or how EET confers a competitive advantage to certain species in methane-converting communities. EET was investigated in a two-chamber electrochemical system, sparged with methane and with an applied potential of +400 mV versus standard hydrogen electrode. A biofilm developed on the working electrode and stable low-density current was produced, confirming that EET indeed did occur. The appearance and presence of redox centers at −140 to −160 mV and at −230 mV in the biofilm was confirmed by cyclic voltammetry scans. Metagenomic analysis and fluorescence in situ hybridization of the biofilm showed that the anaerobic methanotroph ‘Candidatus Methanoperedens BLZ2’ was a significant member of the biofilm community, but its relative abundance did not increase compared to the inoculum. On the contrary, the relative abundance of other members of the microbial community significantly increased (up to 720-fold, 7.2% of mapped reads), placing these microorganisms among the dominant species in the bioanode community. This group included Zoogloea sp., Dechloromonas sp., two members of the Bacteroidetes phylum, and the spirochete Leptonema sp. Genes encoding proteins putatively involved in EET were identified in Zoogloea sp., Dechloromonas sp. and one member of the Bacteroidetes phylum. We suggest that instead of methane, alternative carbon sources such as acetate were the substrate for EET. Hence, EET in a methane-driven chemolithoautotrophic microbial community seems a complex process in which interactions within the microbial community are driving extracellular electron transfer to the electrode.
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Affiliation(s)
- S Berger
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - D R Shaw
- Biological and Environmental Science and Engineering Division, Water Desalination and Reuse Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - T Berben
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - H T Ouboter
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - M H In 't Zandt
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Netherlands Earth System Science Center, Utrecht University, Utrecht, the Netherlands
| | - J Frank
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - J Reimann
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - M S M Jetten
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Netherlands Earth System Science Center, Utrecht University, Utrecht, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - C U Welte
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
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25
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Wang Y, Zhou J, Shi S, Zhou J, He X, He L. Hydraulic flow direction alters nutrients removal performance and microbial mechanisms in electrolysis-assisted constructed wetlands. BIORESOURCE TECHNOLOGY 2021; 325:124692. [PMID: 33453660 DOI: 10.1016/j.biortech.2021.124692] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 01/02/2021] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
In this study, an electrolysis-assisted down-flow constructed wetland (E-DFCW) was successfully established, and achieved simultaneously efficient removal of PO43--P (93.6% ± 3.2%), NO3--N (97.1% ± 2.0%) and TN (80.6% ± 5.4%). When compared with electrolysis-assisted up-flow constructed wetland (E-UFCW), E-DFCW allowed significantly lower concentrations of PO43--P, NO3--N, total Fe and SO42--S in effluents. In addition, microbial community and functional genes prediction results indicated that hydraulic flow direction significantly altered microbial nitrogen, sulfur and carbon metabolisms in electrolysis-assisted constructed wetlands (E-CWs). Specifically, multi-path denitrification facilitated NO3--N reduction in cathodic chamber of E-DFCW, whereas autohydrogenotrophic denitrification might dominate NO3--N reduction in cathodic chamber of E-UFCW. More abundant and diverse denitrifiers in cathodic chamber of E-DFCW contributed to enhanced denitrification performance. Overall, this work provides microbial insights into multi-path nitrogen metabolisms in electrolysis-assisted denitrification systems in response to hydraulic flow direction.
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Affiliation(s)
- Yingmu Wang
- College of Civil Engineering, Fuzhou University, Fujian 350116, China; Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Jian Zhou
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China.
| | - Shuohui Shi
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Jiong Zhou
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Xuejie He
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Lei He
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
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26
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Castaño A, Prosenkov A, Baragaño D, Otaegui N, Sastre H, Rodríguez-Valdés E, Gallego JLR, Peláez AI. Effects of in situ Remediation With Nanoscale Zero Valence Iron on the Physicochemical Conditions and Bacterial Communities of Groundwater Contaminated With Arsenic. Front Microbiol 2021; 12:643589. [PMID: 33815330 PMCID: PMC8010140 DOI: 10.3389/fmicb.2021.643589] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Accepted: 02/25/2021] [Indexed: 12/31/2022] Open
Abstract
Nanoscale Zero-Valent Iron (nZVI) is a cost-effective nanomaterial that is widely used to remove a broad range of metal(loid)s and organic contaminants from soil and groundwater. In some cases, this material alters the taxonomic and functional composition of the bacterial communities present in these matrices; however, there is no conclusive data that can be generalized to all scenarios. Here we studied the effect of nZVI application in situ on groundwater from the site of an abandoned fertilizer factory in Asturias, Spain, mainly polluted with arsenic (As). The geochemical characteristics of the water correspond to a microaerophilic and oligotrophic environment. Physico-chemical and microbiological (cultured and total bacterial diversity) parameters were monitored before and after nZVI application over six months. nZVI treatment led to a marked increase in Fe(II) concentration and a notable fall in the oxidation-reduction potential during the first month of treatment. A substantial decrease in the concentration of As during the first days of treatment was observed, although strong fluctuations were subsequently detected in most of the wells throughout the six-month experiment. The possible toxic effects of nZVI on groundwater bacteria could not be clearly determined from direct observation of those bacteria after staining with viability dyes. The number of cultured bacteria increased during the first two weeks of the treatment, although this was followed by a continuous decrease for the following two weeks, reaching levels moderately below the initial number at the end of sampling, and by changes in their taxonomic composition. Most bacteria were tolerant to high As(V) concentrations and showed the presence of diverse As resistance genes. A more complete study of the structure and diversity of the bacterial community in the groundwater using automated ribosomal intergenic spacer analysis (ARISA) and sequencing of the 16S rRNA amplicons by Illumina confirmed significant alterations in its composition, with a reduction in richness and diversity (the latter evidenced by Illumina data) after treatment with nZVI. The anaerobic conditions stimulated by treatment favored the development of sulfate-reducing bacteria, thereby opening up the possibility to achieve more efficient removal of As.
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Affiliation(s)
- Ana Castaño
- Area of Microbiology, Department of Functional Biology and Environmental Biogeochemistry and Raw Materials Group, University of Oviedo, Oviedo, Spain
| | - Alexander Prosenkov
- Area of Microbiology, Department of Functional Biology and Environmental Biogeochemistry and Raw Materials Group, University of Oviedo, Oviedo, Spain
| | - Diego Baragaño
- INDUROT and Environmental Biogeochemistry and Raw Materials Group, Campus of Mieres, University of Oviedo, Mieres, Spain
| | - Nerea Otaegui
- TECNALIA, Basque Research and Technology Alliance (BRTA), Parque Tecnológico de Bizkaia, Derio, Spain
| | - Herminio Sastre
- Department of Chemical and Environmental Engineering and Environmental Biogeochemistry and Raw Materials Group, University of Oviedo, Oviedo, Spain
| | - Eduardo Rodríguez-Valdés
- INDUROT and Environmental Biogeochemistry and Raw Materials Group, Campus of Mieres, University of Oviedo, Mieres, Spain
| | - José Luis R Gallego
- INDUROT and Environmental Biogeochemistry and Raw Materials Group, Campus of Mieres, University of Oviedo, Mieres, Spain
| | - Ana Isabel Peláez
- Area of Microbiology, Department of Functional Biology and Environmental Biogeochemistry and Raw Materials Group, University of Oviedo, Oviedo, Spain.,University Institute of Biotechnology of Asturias (IUBA), University of Oviedo, Oviedo, Spain
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27
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Casar CP, Kruger BR, Flynn TM, Masterson AL, Momper LM, Osburn MR. Mineral-hosted biofilm communities in the continental deep subsurface, Deep Mine Microbial Observatory, SD, USA. GEOBIOLOGY 2020; 18:508-522. [PMID: 32216092 DOI: 10.1111/gbi.12391] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 01/29/2020] [Accepted: 02/27/2020] [Indexed: 06/10/2023]
Abstract
Deep subsurface biofilms are estimated to host the majority of prokaryotic life on Earth, yet fundamental aspects of their ecology remain unknown. An inherent difficulty in studying subsurface biofilms is that of sample acquisition. While samples from marine and terrestrial deep subsurface fluids have revealed abundant and diverse microbial life, limited work has described the corresponding biofilms on rock fracture and pore space surfaces. The recently established Deep Mine Microbial Observatory (DeMMO) is a long-term monitoring network at which we can explore the ecological role of biofilms in fluid-filled fractures to depths of 1.5 km. We carried out in situ cultivation experiments with single minerals representative of DeMMO host rock to explore the ecological drivers of biodiversity and biomass in biofilm communities in the continental subsurface. Coupling cell densities to thermodynamic models of putative metabolic reactions with minerals suggests a metabolic relationship between biofilms and the minerals they colonize. Our findings indicate that minerals can significantly enhance biofilm cell densities and promote selective colonization by taxa putatively capable of extracellular electron transfer. In turn, minerals can drive significant differences in biodiversity between fluid and biofilm communities. Given our findings at DeMMO, we suggest that host rock mineralogy is an important ecological driver in deep continental biospheres.
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Affiliation(s)
- Caitlin P Casar
- Department of Earth and Planetary Sciences, Northwestern University, Evanston, IL, USA
| | - Brittany R Kruger
- Division of Hydrologic Sciences, Desert Research Institute, Las Vegas, NV, USA
| | - Theodore M Flynn
- Biosciences Division, Argonne National Laboratory, Argonne, IL, USA
| | - Andrew L Masterson
- Department of Earth and Planetary Sciences, Northwestern University, Evanston, IL, USA
| | - Lily M Momper
- Department of Earth and Planetary Sciences, Northwestern University, Evanston, IL, USA
| | - Magdalena R Osburn
- Department of Earth and Planetary Sciences, Northwestern University, Evanston, IL, USA
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Liu Y, Sheng Y, Feng C, Chen N, Liu T. Distinct functional microbial communities mediating the heterotrophic denitrification in response to the excessive Fe(II) stress in groundwater under wheat-rice stone and rock phosphate amendments. ENVIRONMENTAL RESEARCH 2020; 185:109391. [PMID: 32240841 DOI: 10.1016/j.envres.2020.109391] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 03/11/2020] [Accepted: 03/12/2020] [Indexed: 06/11/2023]
Abstract
Denitrifying microbial community can be utilized for eliminating nitrate and Fe(II) combined contamination in groundwater, while excessive amount of Fe(II) limit the process. Natural mineral can be additional substrate for the microbial growth, whereas how it influences the microbial community that mediating the denitrification coupling with Fe(II) oxidation and balancing inhibition of excessive Fe(II) on denitrification remain unclear. In the present study, we conducted a series of microcosm experiments to explore the denitrification and Fe(II) oxidation kinetic, and used RNA-based qPCR and DNA-based high-throughput sequencing to elucidate microbial diversity, co-occurrence and metabolic profiles amended by wheat-rice stone and rock phosphate. The results showed that both minerals could extensively improve and double the denitrification rates (2.0 ± 0.03 to 2.12 ± 0.13 times), decrease the nitrite accumulation and trigger the high resistance of the denitrifiers from the stress of Fe(II), whereas only wheat-rice stone with higher surface area increased the oxidation of Fe(II) (<10%). The addition of both minerals enhanced the microbial alpha-diversity, shaped the beta-diversity and co-occurrence network, and recovered the transcription of nitrate and nitrite reductase (Nar, Nap, NirS, NirK) from the Fe(II) inhibition. Accordingly, heterotroph Methyloversatilis sp., Methylotenra sp. might contribute to the denitrification under wheat-rice stone amendment, Denitratisoma sp. contribute to the denitrification for rock phosphate, and Fe oxidation was partially catalyzed by Dechloromonas sp. or abiotically by the nitrite/nitrous oxide. These findings would be helpful for better understanding the bioremediation of nitrate and Fe contaminated groundwater.
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Affiliation(s)
- Ying Liu
- School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, China; The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
| | - Yizhi Sheng
- School of Environment, Tsinghua University, Beijing, 100084, China; Department of Geology and Environmental Earth Science, Miami University, OH, 45056, USA
| | - Chuanping Feng
- School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, China.
| | - Nan Chen
- School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, China
| | - Tong Liu
- School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, China
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29
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Wei H, Gao D, Liu Y, Lin X. Sediment nitrate reduction processes in response to environmental gradients along an urban river-estuary-sea continuum. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 718:137185. [PMID: 32092511 DOI: 10.1016/j.scitotenv.2020.137185] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 01/29/2020] [Accepted: 02/06/2020] [Indexed: 06/10/2023]
Abstract
Sediment denitrification (DEN), anaerobic ammonium oxidation (Anammox), and dissimilatory nitrate reduction to ammonium (DNRA) are three important nitrate (NO3-) reduction pathways in aquatic ecosystems. These processes modify nitrogen (N) loadings from land to the ocean, with important implications on the management of coastal eutrophication. While NO3- reduction has been studied intensively for various types of habitats, studies on its distributions along river-estuary-sea continua remain scarce. In this study, we examined these three pathways along a N-laden urban river-estuary-sea continuum comprised of three types of habitats (urban river, estuary, and adjacent sea) in the densely populated Shanghai-East China Sea area. The potential DEN, Anammox, and DNRA rates decreased seaward both in summer and winter in response to decreasing sediment organic matter (OM, 20 to 7 to 7 mg C g-1), ferrous oxide (9 to 2.7 to 2.8 mg Fe g-1), and bottom water dissolved inorganic nitrogen (543 to 112 to 21 μM). Among these pathways, DEN remained a major component (~69.6%) across habitats, while Anammox (47.9%) rivaled DEN (48.3%) in the urban river in winter. N retention index (NIRI), the ratio between retained and removed NO3-, ranged from 0 to 0.5 and increased downstream. Together, these results suggest that the decreasing gradients of OM and inorganic matter shape the distribution of NO3- reduction along the continuum, reflecting the diminishing impact of the river and human inputs from the urban river to the ocean. Our results highlight the importance of taking a continuum perspective in N cycling studies and emphasize the role of urban rivers as N removal hotspots, which should be a focus of research and management.
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Affiliation(s)
- Hengchen Wei
- The University of Texas at Austin Marine Science Institute, 750 Channel View Drive, Port Aransas, TX 78373, USA
| | - Dengzhou Gao
- School of Geographic Sciences, Key Laboratory of Geographic Information Science of the Ministry of Education, East China Normal University, Shanghai 200241, China
| | - Yong Liu
- Key Laboratory of South China Sea Fishery Resources Exploitation & Utilization, Ministry of Agriculture and Rural Affairs, Guangzhou 510300, China
| | - Xianbiao Lin
- Laboratory of Microbial Ecology and Matter Cycles, School of Marine Sciences, Sun Yat-Sen University, Zhuhai 519082, China; School of Geographic Sciences, Key Laboratory of Geographic Information Science of the Ministry of Education, East China Normal University, Shanghai 200241, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China.
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30
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Wang Y, Lin Z, Huang W, He S, Zhou J. Electron storage and resupply modes during sulfur cycle enhanced nitrogen removal stability in electrochemically assisted constructed wetlands under low temperature. BIORESOURCE TECHNOLOGY 2020; 300:122704. [PMID: 31911318 DOI: 10.1016/j.biortech.2019.122704] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 12/21/2019] [Accepted: 12/26/2019] [Indexed: 06/10/2023]
Abstract
In this work, an electrochemically assisted vertical flow constructed wetland (E-VFCW) achieved efficient PO43--P (92.9-96.6%), NO3--N (50.8-91.8%) and TN (38.8-73.1%) removal from synthetic sewage effluent within 1-12 h at 12 °C. Abiotic reduction, Fe(II)-, S- and H2-dependent denitrification, as well as coupling of fermentation, acetogenesis and heterotrophic denitrification might facilitate NO3--N removal in the E-VFCW. Particularly, electron resupply for NO3--N reduction by the in-situ deposited FeS, FeS2 and S0 in the E-VFCW would occur during electron supply-demand disequilibrium situations (e.g., lower HRT or temperature). Stoichiometric results suggested that 21.7-278.7 mmol e- d-1 from the in-situ deposited S contributed to NO3--N reduction under HRT of 1-6 h at 12 °C, which improved the resilience capabilities of the E-VFCW to temperature and nitrogen loads fluctuations. Overall, this work provides new insights into the modes of S cycle mediating NO3--N conversions in the E-VFCW under low temperature.
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Affiliation(s)
- Yingmu Wang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China; National Centre for International Research of Low-Carbon and Green Buildings, Chongqing University, Chongqing 400045, China
| | - Ziyuan Lin
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China; National Centre for International Research of Low-Carbon and Green Buildings, Chongqing University, Chongqing 400045, China
| | - Wei Huang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China; National Centre for International Research of Low-Carbon and Green Buildings, Chongqing University, Chongqing 400045, China
| | - Shuang He
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China; National Centre for International Research of Low-Carbon and Green Buildings, Chongqing University, Chongqing 400045, China
| | - Jian Zhou
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China; National Centre for International Research of Low-Carbon and Green Buildings, Chongqing University, Chongqing 400045, China.
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31
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Rahman MM, Roberts KL, Grace MR, Kessler AJ, Cook PLM. Role of organic carbon, nitrate and ferrous iron on the partitioning between denitrification and DNRA in constructed stormwater urban wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 666:608-617. [PMID: 30807951 DOI: 10.1016/j.scitotenv.2019.02.225] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 02/14/2019] [Accepted: 02/14/2019] [Indexed: 06/09/2023]
Abstract
Denitrification (DNF) and dissimilatory nitrate reduction to ammonium (DNRA) are two competing nitrate reduction pathways that remove or recycle nitrogen, respectively. However, factors controlling the partitioning between these two pathways are manifold and our understanding of these factors is critical for the management of N loads in constructed wetlands. An important factor that controls DNRA in an aquatic ecosystem is the electron donor, commonly organic carbon (OC) or alternatively ferrous iron and sulfide. In this study, we investigated the role of natural organic carbon (NOC) and acetate at different OC/NO3- ratios and ferrous iron on the partitioning between DNF and DNRA using the 15N-tracer method in slurries from four constructed stormwater urban wetlands in Melbourne, Australia. The carbon and nitrate experiments revealed that DNF dominated at all OC/NO3- ratios. The higher DNF and DNRA rates observed after the addition of NOC indicates that nitrate reduction was enhanced more by NOC than acetate. Moreover, addition of NOC in slurries stimulated DNRA more than DNF. Interestingly, slurries amended with Fe2+ showed that Fe2+ had significant control on the balance between DNF and DNRA. From two out of four wetlands, a significant increase in DNRA rates (p < .05) at the cost of DNF in the presence of available Fe2+ suggests DNRA is coupled to Fe2+ oxidation. Rates of DNRA increased 1.5-3.5 times in the Fe2+ treatment compared to the control. Overall, our study provides direct evidence that DNRA is linked to Fe2+ oxidation in some wetland sediments and highlights the role of Fe2+ in controlling the partitioning between removal (DNF) and recycling (DNRA) of bioavailable N in stormwater urban constructed wetlands. In our study we also measured anammox and found that it was always <0.05% of total nitrate reduction in these sediments.
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Affiliation(s)
- Md Moklesur Rahman
- Water Studies Centre, School of Chemistry, Monash University, Clayton, Australia.
| | - Keryn L Roberts
- Water Studies Centre, School of Chemistry, Monash University, Clayton, Australia.
| | - Michael R Grace
- Water Studies Centre, School of Chemistry, Monash University, Clayton, Australia.
| | - Adam J Kessler
- Water Studies Centre, School of Chemistry, Monash University, Clayton, Australia.
| | - Perran L M Cook
- Water Studies Centre, School of Chemistry, Monash University, Clayton, Australia.
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Yuan H, Li Y, Zhang X, Wang X, Wang H. Alteration of denitrifying microbial communities by redox mediators available at low temperature. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2019; 79:1253-1262. [PMID: 31123225 DOI: 10.2166/wst.2019.116] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Four sequential batch reactors (SBRs) containing synthetic sewage for denitrification were investigated in this study. Three of them had added one of the three redox mediators, which were anthraquinone-1,5-disulfonate (AQDS), 1,2-naphthoquinone-4-sulfonate (NQS), and 2-hydroxy-1,4-naphthoquinone (LAW), operated at 20 °C and 10 °C, and an additional one to serve as the control. Results showed that 10 °C inhibited denitrification to a considerable extent, but the addition of mediators increased the denitrification rate and efficiency. The total nitrogen removal efficiency increased in the presence of three different redox mediators (100 μmol/L), among which LAW express the best accelerating effectiveness at normal temperature and NQS at low temperature. This may be due to the growth of microorganisms, whose community compositions changed considerably when the different redox mediators were added. Therefore, Illumina MiSeq sequencing was used to identify the different microbial communities. Thauera was dominant at 10 °C (25.60%). Furthermore, the addition of mediators greatly promoted Thauera growth (31.11%-42.41%), especially LAW (42.41%). At 20 °C, Candidatus Competibacter (8.31%-9.59%) and Denitratisoma (6.33%-7.39%) were dominant. Thauera and Denitratisoma are denitrifiers. These results could improve understanding of the sewage biological process at low temperature.
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Affiliation(s)
- Hongying Yuan
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China E-mail:
| | - Yuanling Li
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China E-mail:
| | - Xiaoya Zhang
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China E-mail:
| | - Xue Wang
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China E-mail:
| | - Hongybin Wang
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin 300384, China E-mail:
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Wang Y, Lin Z, Wang Y, Huang W, Wang J, Zhou J, He Q. Sulfur and iron cycles promoted nitrogen and phosphorus removal in electrochemically assisted vertical flow constructed wetland treating wastewater treatment plant effluent with high S/N ratio. WATER RESEARCH 2019; 151:20-30. [PMID: 30579051 DOI: 10.1016/j.watres.2018.12.005] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 11/24/2018] [Accepted: 12/07/2018] [Indexed: 06/09/2023]
Abstract
Phosphate (PO43--P) and nitrate (NO3--N) in the effluent of wastewater treatment plants are the predominant sources of eutrophication. In this study, a bench-scale electrochemically assisted vertical flow constructed wetland (E-VFCW) was developed, which exhibited favorable PO43--P (89.7-99.4%), NO3--N (82.7-99.6%), and TN (51.9-93.7%) removal efficiency in tertiary wastewater treatment. In addition, little N2O accumulation (0.32-2.19% of △NO3--N) was observed. The study further elucidated that PO43--P was removed mainly in the anode chamber by co-precipitation (Fe(n+)OH-PO4) and adsorption (FeOOH-PO4) pathways. Multi-pathway of NO3--N reduction was proposed, with 13.9-30.2% of NO3--N predominantly eliminated in the anode chamber by ferrous-dependent NO3--N reduction bacteria. In the cathode chamber, electrons storage and resupply modes during S cycle exerted crucial roles in NO3--N reduction, which enhanced the resilience capabilities of the E-VFCW to shock loadings. Stoichiometric analysis revealed that 3.3-6.6 mmol e-/cycle were stored in the form of S0, FeS, and FeS2 in the E-VFCW under longer HRT or higher current density. However, the deposited S resupplied 19.6% and 28.3% of electrons for NO3--N reduction under shorter HRT (1 h) or lower current density (0.01 mA cm-2). Moreover, ferrous-driven NO3--N-reducing or DNRA bacteria also promoted NO3--N elimination in the cathode chamber. These findings provide new insight into the coupling interactions among S, Fe and H cycles, as well as N and P transformations in electrochemically assisted NO3--N reduction systems.
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Affiliation(s)
- Yingmu Wang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Ziyuan Lin
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Yue Wang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Wei Huang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Jiale Wang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Jian Zhou
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China.
| | - Qiang He
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China.
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Liu T, Chen D, Li X, Li F. Microbially mediated coupling of nitrate reduction and Fe(II) oxidation under anoxic conditions. FEMS Microbiol Ecol 2019; 95:5371120. [DOI: 10.1093/femsec/fiz030] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 03/06/2019] [Indexed: 11/12/2022] Open
Affiliation(s)
- Tongxu Liu
- Guangzhou Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, P. R. China
| | - Dandan Chen
- Guangzhou Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, P. R. China
- Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Xiaomin Li
- The Environmental Research Institute, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Fangbai Li
- Guangzhou Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, P. R. China
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Liu Y, Feng C, Sheng Y, Dong S, Chen N, Hao C. Effect of Fe(II) on reactivity of heterotrophic denitrifiers in the remediation of nitrate- and Fe(II)-contaminated groundwater. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 166:437-445. [PMID: 30292110 DOI: 10.1016/j.ecoenv.2018.09.104] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 09/07/2018] [Accepted: 09/24/2018] [Indexed: 06/08/2023]
Abstract
Heterotrophic denitrifiers, capable of simultaneous nitrate reduction and Fe(II) oxidation, can be applied for the remediation of nitrate and Fe(II) combined contamination in groundwater. Under strictly anaerobic condition, denitrifying microbial communities were enriched with the coexistence of soluble nitrate, Fe(II) and associated nutrient elements to monitor the denitrification process. Low abundance of Fe(II) (e.g., 10 mg L-1 in this study) tended to stimulate the activity of denitrifying microbial communities. However, elevated Fe(II) concentration (50 and 100 mg L-1 in this study), acted as a stress, strongly inhibited the activity and reproduction of denitrifiers. Besides, through thermodynamics calculations, methanol rather than Fe(II) was proved to be the preferable electron donors for both energy metabolism and anabolism. Betaproteobacteria was found to be the most predominant (sub)phylum in all enriched microbial assemblages. Methylovesartilis was the most predominant group mainly catalyzed for methanol based denitrification, and others denitrifiers included Methylophilaceae, Dechloromonas and Denitratisoma. Excessive Fe(II) in the solution greatly reduced the proportions of these denitrifying groups, while the influence seemed to be less apparent on functional genes composition. As such, a conceptional metabolism pathway of the most dominant genus (i.e., Methylovesartilis) for nitrate reducing as well as methanol and Fe(II) oxidation confirmed that biotic nitrate reducing and Fe(II) oxidizing were potentially proceeded in cytoplasm by enzymes such as NarGHI. The Fe(II) oxidation rate depended on the rate of Fe(II) entering into the cell. These findings provide a clear mechanistic understanding of heterotrophic denitrification coupling with Fe(II) oxidation, and environmental implication for the bioremediation of nitrate and Fe(II) contaminated groundwater.
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Affiliation(s)
- Ying Liu
- Key Laboratory of Groundwater Circulation and Environmental Evolution (China University of Geosciences (Beijing)), Ministry of Education, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
| | - Chuanping Feng
- Key Laboratory of Groundwater Circulation and Environmental Evolution (China University of Geosciences (Beijing)), Ministry of Education, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China.
| | - Yizhi Sheng
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Shanshan Dong
- Key Laboratory of Groundwater Circulation and Environmental Evolution (China University of Geosciences (Beijing)), Ministry of Education, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
| | - Nan Chen
- Key Laboratory of Groundwater Circulation and Environmental Evolution (China University of Geosciences (Beijing)), Ministry of Education, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
| | - Chunbo Hao
- Key Laboratory of Groundwater Circulation and Environmental Evolution (China University of Geosciences (Beijing)), Ministry of Education, Beijing 100083, China; School of Water Resources and Environment, China University of Geosciences, Beijing 100083, China
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36
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Si Z, Song X, Wang Y, Cao X, Zhao Y, Wang B, Chen Y, Arefe A. Intensified heterotrophic denitrification in constructed wetlands using four solid carbon sources: Denitrification efficiency and bacterial community structure. BIORESOURCE TECHNOLOGY 2018; 267:416-425. [PMID: 30032055 DOI: 10.1016/j.biortech.2018.07.029] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2018] [Revised: 07/03/2018] [Accepted: 07/06/2018] [Indexed: 06/08/2023]
Abstract
Biodenitrification using solid carbon sources is a cost-effective way for nitrate removal. In the study, wheat straw, cotton, poly(butylene succinate), and newspaper was chosen as the carbon source to compare the denitrification efficiency and bacterial communities in constructed wetlands. Parameters including COD, NO3--N, NO2--N and total nitrogen (TN) were analyzed. Results indicated that newspaper provided significantly higher NO3--N and TN removal efficiency than the other three solid carbon sources in low-temperature condition. Moreover, both newspaper and wheat straw allowed high NO3--N and TN removal efficiency in high-temperature condition. According to pyrosequencing analysis, denitrifying bacteria Dechloromonas and Thauera were the predominant genus in the anaerobic zone of CO- (3.92 and 2.35%, respectively), WS- (1.97 and 1.02%, respectively) and NP-CWs (1.71 and 1.31%, respectively). Genus of Levilinea was enriched in NP- (1.02%) and WS-CWs (0.91%). Furthermore, genus Paludibacter (2.69%) and Saccharofermentans (3.14%) showed high relative abundance in WS-CWs.
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Affiliation(s)
- Zhihao Si
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
| | - Xinshan Song
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China.
| | - Yuhui Wang
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
| | - Xin Cao
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
| | - Yufeng Zhao
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
| | - Bodi Wang
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
| | - Yan Chen
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
| | - Awet Arefe
- College of Environmental Science and Engineering, State Environmental Protection Engineering Center for Pollution Treatment and Control in Textile Industry, Donghua University, Shanghai 201620, China
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Price A, Pearson VK, Schwenzer SP, Miot J, Olsson-Francis K. Nitrate-Dependent Iron Oxidation: A Potential Mars Metabolism. Front Microbiol 2018; 9:513. [PMID: 29616015 PMCID: PMC5869265 DOI: 10.3389/fmicb.2018.00513] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 03/06/2018] [Indexed: 11/13/2022] Open
Abstract
This work considers the hypothetical viability of microbial nitrate-dependent Fe2+ oxidation (NDFO) for supporting simple life in the context of the early Mars environment. This draws on knowledge built up over several decades of remote and in situ observation, as well as recent discoveries that have shaped current understanding of early Mars. Our current understanding is that certain early martian environments fulfill several of the key requirements for microbes with NDFO metabolism. First, abundant Fe2+ has been identified on Mars and provides evidence of an accessible electron donor; evidence of anoxia suggests that abiotic Fe2+ oxidation by molecular oxygen would not have interfered and competed with microbial iron metabolism in these environments. Second, nitrate, which can be used by some iron oxidizing microorganisms as an electron acceptor, has also been confirmed in modern aeolian and ancient sediment deposits on Mars. In addition to redox substrates, reservoirs of both organic and inorganic carbon are available for biosynthesis, and geochemical evidence suggests that lacustrine systems during the hydrologically active Noachian period (4.1-3.7 Ga) match the circumneutral pH requirements of nitrate-dependent iron-oxidizing microorganisms. As well as potentially acting as a primary producer in early martian lakes and fluvial systems, the light-independent nature of NDFO suggests that such microbes could have persisted in sub-surface aquifers long after the desiccation of the surface, provided that adequate carbon and nitrates sources were prevalent. Traces of NDFO microorganisms may be preserved in the rock record by biomineralization and cellular encrustation in zones of high Fe2+ concentrations. These processes could produce morphological biosignatures, preserve distinctive Fe-isotope variation patterns, and enhance preservation of biological organic compounds. Such biosignatures could be detectable by future missions to Mars with appropriate instrumentation.
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Affiliation(s)
- Alex Price
- Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Victoria K. Pearson
- Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Susanne P. Schwenzer
- Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Jennyfer Miot
- CNRS, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie – Sorbonne Universités, UMR 7590, Paris, France
| | - Karen Olsson-Francis
- Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
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Meyer-Dombard DR, Casar CP, Simon AG, Cardace D, Schrenk MO, Arcilla CA. Biofilm formation and potential for iron cycling in serpentinization-influenced groundwater of the Zambales and Coast Range ophiolites. Extremophiles 2018; 22:407-431. [PMID: 29450709 DOI: 10.1007/s00792-018-1005-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2016] [Accepted: 02/05/2018] [Indexed: 02/01/2023]
Abstract
Terrestrial serpentinizing systems harbor microbial subsurface life. Passive or active microbially mediated iron transformations at alkaline conditions in deep biosphere serpentinizing ecosystems are understudied. We explore these processes in the Zambales (Philippines) and Coast Range (CA, USA) ophiolites, and associated surface ecosystems by probing the relevance of samples acquired at the surface to in situ, subsurface ecosystems, and the nature of microbe-mineral associations in the subsurface. In this pilot study, we use microcosm experiments and batch culturing directed at iron redox transformations to confirm thermodynamically based predictions that iron transformations may be important in subsurface serpentinizing ecosystems. Biofilms formed on rock cores from the Zambales ophiolite on surface and in-pit associations, confirming that organisms from serpentinizing systems can form biofilms in subsurface environments. Analysis by XPS and FTIR confirmed that enrichment culturing utilizing ferric iron growth substrates produced reduced, magnetic solids containing siderite, spinels, and FeO minerals. Microcosms and enrichment cultures supported organisms whose near relatives participate in iron redox transformations. Further, a potential 'principal' microbial community common to solid samples in serpentinizing systems was identified. These results indicate collectively that iron redox transformations should be more thoroughly and universally considered when assessing the function of terrestrial subsurface ecosystems driven by serpentinization.
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Affiliation(s)
- D'Arcy R Meyer-Dombard
- Department of Earth and Environmental Sciences, University of Illinois at Chicago, m/c 186, 845 W. Taylor St., Chicago, IL, 60515, USA.
| | - Caitlin P Casar
- Department of Earth and Environmental Sciences, University of Illinois at Chicago, m/c 186, 845 W. Taylor St., Chicago, IL, 60515, USA
| | - Alexander G Simon
- Department of Earth and Environmental Sciences, University of Illinois at Chicago, m/c 186, 845 W. Taylor St., Chicago, IL, 60515, USA
| | - Dawn Cardace
- Department of Geosciences, University of Rhode Island, Kingston, IL, USA
| | - Matthew O Schrenk
- Department of Earth and Environmental Sciences, Michigan State University, East Lansing, MI, USA
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA
| | - Carlo A Arcilla
- National Institute of Geological Sciences, University of the Philippines, Diliman, Quezon City, Philippines
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Weisener C, Lee J, Chaganti SR, Reid T, Falk N, Drouillard K. Investigating sources and sinks of N 2O expression from freshwater microbial communities in urban watershed sediments. CHEMOSPHERE 2017; 188:697-705. [PMID: 28934707 DOI: 10.1016/j.chemosphere.2017.09.036] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Revised: 09/06/2017] [Accepted: 09/09/2017] [Indexed: 06/07/2023]
Abstract
Wastewater treatment plants (WWTPs) serve as point-source inputs for a variety of nutrients often dominated by nitrogenous compounds as a result of anthropogenic influence. These effluents can impact biogeochemical cycles in freshwater estuaries, influencing microbial communities in both the water and sediment compartments. To assess the impact of point source nutrients, a transect of sediment and pore water samples were collected from 4 locations in the Little River Sub-watershed including locations above and below the Little River Pollution Control Plant (LRPCP). Variation in chemistry and microbial community/gene expression revealed significant influences of the effluent discharge on the adjacent sediments. Phosphorus and sulfur showed high concentrations within plume sediments compared to the reference sediments while nitrate concentrations were low. Increased abundance of denitrifiers Dechloromonas, Dok59 and Thermomonas correlating with increased expression of nitrous-oxide reductase suggests a conversion of N2O to N2 within the LRPCP effluent sediments. This study provides valuable insight into the gene regulation of microbes involved in N metabolism (denitrification, nitrification, and nitrite reduction to ammonia) within the sediment compartment influenced by wastewater effluent.
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Affiliation(s)
- Christopher Weisener
- Great Lakes Institute for Environmental Science, University of Windsor, 401 Sunset Avenue, Windsor, Ontario, N9B 3P4, Canada.
| | - Jumin Lee
- Great Lakes Institute for Environmental Science, University of Windsor, 401 Sunset Avenue, Windsor, Ontario, N9B 3P4, Canada; Earth Science Department, Western University, London, Ontario, Canada
| | - Subba Rao Chaganti
- Great Lakes Institute for Environmental Science, University of Windsor, 401 Sunset Avenue, Windsor, Ontario, N9B 3P4, Canada
| | - Thomas Reid
- Great Lakes Institute for Environmental Science, University of Windsor, 401 Sunset Avenue, Windsor, Ontario, N9B 3P4, Canada
| | - Nick Falk
- Great Lakes Institute for Environmental Science, University of Windsor, 401 Sunset Avenue, Windsor, Ontario, N9B 3P4, Canada
| | - Ken Drouillard
- Great Lakes Institute for Environmental Science, University of Windsor, 401 Sunset Avenue, Windsor, Ontario, N9B 3P4, Canada
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40
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He Z, Long X, Li L, Yu G, Chong Y, Xing W, Zhu Z. Temperature response of sulfide/ferrous oxidation and microbial community in anoxic sediments treated with calcium nitrate addition. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2017; 191:209-218. [PMID: 28104553 DOI: 10.1016/j.jenvman.2017.01.008] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Revised: 01/02/2017] [Accepted: 01/05/2017] [Indexed: 06/06/2023]
Abstract
Nitrate-driven sulfide oxidation has been proved a cost-effective way to control sediments odor which has long been a universal problem for urban rivers in south China areas. In this work, sediments treatment experiments under a dynamic variation of temperature from 5 °C to 35 °C with 3% of calcium nitrate added were conducted to reveal the influence of temperature variation on this process. The results showed that microbial community was remarkably restructured by temperature variation. Pseudomonas (15.56-29.31%), Sulfurimonas (26.81%) and Thiobacillus (37.99%) were dominant genus at temperature of ≤15 °C, 25 °C and 35 °C, respectively. It seemed that species enrichment occurring at different temperature gradient resulted in the distinct variation of microbial community structure and diversity. Moreover, nitrate-driven sulfide and ferrous oxidation were proportionally promoted only when temperature increased above 15 °C. The dominant bacteria at high temperature stage were those genus that closely related to autotrophic nitrate-driven sulfide and ferrous oxidizing bacteria (e.g.Thiobacillus, Sulfurimonas and Thermomonas), revealing that promotion of sulfide/ferrous oxidation could be attributed to the change of dominant bacteria determined by temperature variation. Thus, a higher treatment efficiency by calcium nitrate addition for odor control would be achieved in summer than any other seasons in south China areas.
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Affiliation(s)
- Zihao He
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Xinxian Long
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China.
| | - Luyao Li
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Guangwei Yu
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China.
| | - Yunxiao Chong
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Wen Xing
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Ziao Zhu
- Department of Environmental Science and Engineering, College of Natural Resource and Environment, South China Agricultural University, Guangzhou 510642, China
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41
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Xing W, Li J, Cong Y, Gao W, Jia Z, Li D. Identification of the autotrophic denitrifying community in nitrate removal reactors by DNA-stable isotope probing. BIORESOURCE TECHNOLOGY 2017; 229:134-142. [PMID: 28110230 DOI: 10.1016/j.biortech.2017.01.010] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 01/01/2017] [Accepted: 01/06/2017] [Indexed: 06/06/2023]
Abstract
Autotrophic denitrification has attracted increasing attention for wastewater with insufficient organic carbon sources. Nevertheless, in situ identification of autotrophic denitrifying communities in reactors remains challenging. Here, a process combining micro-electrolysis and autotrophic denitrification with high nitrate removal efficiency was presented. Two batch reactors were fed organic-free nitrate influent, with H13CO3- and H12CO3- as inorganic carbon sources. DNA-based stable-isotope probing (DNA-SIP) was used to obtain molecular evidence for autotrophic denitrifying communities. The results showed that the nirS gene was strongly labeled by H13CO3-, demonstrating that the inorganic carbon source was assimilated by autotrophic denitrifiers. High-throughput sequencing and clone library analysis identified Thiobacillus-like bacteria as the most dominant autotrophic denitrifiers. However, 88% of nirS genes cloned from the 13C-labeled "heavy" DNA fraction showed low similarity with all culturable denitrifiers. These findings provided functional and taxonomical identification of autotrophic denitrifying communities, facilitating application of autotrophic denitrification process for wastewater treatment.
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Affiliation(s)
- Wei Xing
- School of Civil Engineering, Beijing Jiaotong University, Beijing 100044, China; Beijing Key Laboratory of Aqueous Typical Pollutants Control and Water Quality Safeguard, Beijing 100044, China.
| | - Jinlong Li
- School of Civil Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Yuan Cong
- School of Civil Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Wei Gao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Zhongjun Jia
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Desheng Li
- School of Civil Engineering, Beijing Jiaotong University, Beijing 100044, China; Beijing Key Laboratory of Aqueous Typical Pollutants Control and Water Quality Safeguard, Beijing 100044, China.
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42
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Li D, Hu N, Sui Y, Ding D, Li K, Li G, Wang Y. Influence of bicarbonate on the abundance of microbial communities capable of reducing U(vi) in groundwater. RSC Adv 2017. [DOI: 10.1039/c7ra09795f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
7 experiments amended with 0, 5, 10, 15, 20, 25 and 30 mM initial concentrations of bicarbonate were conducted to investigate the influence of different concentrations of bicarbonate on the abundance of microbial communities capable of reducing U(vi) in groundwater.
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Affiliation(s)
- Dianxin Li
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Nan Hu
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Yang Sui
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Dexin Ding
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Ke Li
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Guangyue Li
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Yongdong Wang
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
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White GF, Edwards MJ, Gomez-Perez L, Richardson DJ, Butt JN, Clarke TA. Mechanisms of Bacterial Extracellular Electron Exchange. Adv Microb Physiol 2016; 68:87-138. [PMID: 27134022 DOI: 10.1016/bs.ampbs.2016.02.002] [Citation(s) in RCA: 83] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The biochemical mechanisms by which microbes interact with extracellular soluble metal ions and insoluble redox-active minerals have been the focus of intense research over the last three decades. The process presents two challenges to the microorganism. Firstly, electrons have to be transported at the cell surface, which in Gram-negative bacteria presents an additional problem of electron transfer across the ~6nm of the outer membrane. Secondly, the electrons must be transferred to or from the terminal electron acceptors or donors. This review covers the known mechanisms that bacteria use to transport electrons across the cell envelope to external electron donors/acceptors. In Gram-negative bacteria, electron transfer across the outer membrane involves the use of an outer membrane β-barrel and cytochrome. These can be in the form of a porin-cytochrome protein, such as Cyc2 of Acidithiobacillus ferrooxidans, or a multiprotein porin-cytochrome complex like MtrCAB of Shewanella oneidensis MR-1. For mineral-respiring organisms, there is the additional challenge of transferring the electrons from the cell to mineral surface. For the strict anaerobe Geobacter sulfurreducens this requires electron transfer through conductive pili to associated cytochrome OmcS that directly reduces Fe(III)oxides, while the facultative anaerobe S. oneidensis MR-1 accomplishes mineral reduction through direct membrane contact, contact through filamentous extensions and soluble flavin shuttles, all of which require the outer membrane cytochromes MtrC and OmcA in addition to secreted flavin.
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Affiliation(s)
- G F White
- School of Biological Sciences and School of Chemistry, University of East Anglia, Norwich, United Kingdom
| | - M J Edwards
- School of Biological Sciences and School of Chemistry, University of East Anglia, Norwich, United Kingdom
| | - L Gomez-Perez
- School of Biological Sciences and School of Chemistry, University of East Anglia, Norwich, United Kingdom
| | - D J Richardson
- School of Biological Sciences and School of Chemistry, University of East Anglia, Norwich, United Kingdom
| | - J N Butt
- School of Biological Sciences and School of Chemistry, University of East Anglia, Norwich, United Kingdom
| | - T A Clarke
- School of Biological Sciences and School of Chemistry, University of East Anglia, Norwich, United Kingdom.
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Zhou J, Wang H, Yang K, Ji B, Chen D, Zhang H, Sun Y, Tian J. Autotrophic denitrification by nitrate-dependent Fe(II) oxidation in a continuous up-flow biofilter. Bioprocess Biosyst Eng 2015; 39:277-84. [DOI: 10.1007/s00449-015-1511-7] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Accepted: 11/18/2015] [Indexed: 10/22/2022]
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45
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Baek G, Kim J, Shin SG, Lee C. Bioaugmentation of anaerobic sludge digestion with iron-reducing bacteria: process and microbial responses to variations in hydraulic retention time. Appl Microbiol Biotechnol 2015; 100:927-37. [DOI: 10.1007/s00253-015-7018-y] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2015] [Revised: 09/07/2015] [Accepted: 09/17/2015] [Indexed: 10/23/2022]
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46
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Miot J, Remusat L, Duprat E, Gonzalez A, Pont S, Poinsot M. Fe biomineralization mirrors individual metabolic activity in a nitrate-dependent Fe(II)-oxidizer. Front Microbiol 2015; 6:879. [PMID: 26441847 PMCID: PMC4562303 DOI: 10.3389/fmicb.2015.00879] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Accepted: 08/10/2015] [Indexed: 12/15/2022] Open
Abstract
Microbial biomineralization sometimes leads to periplasmic encrustation, which is predicted to enhance microorganism preservation in the fossil record. Mineral precipitation within the periplasm is, however, thought to induce death, as a result of permeability loss preventing nutrient and waste transit across the cell wall. This hypothesis had, however, never been investigated down to the single cell level. Here, we cultured the nitrate reducing Fe(II) oxidizing bacteria Acidovorax sp. strain BoFeN1 that have been previously shown to promote the precipitation of a diversity of Fe minerals (lepidocrocite, goethite, Fe phosphate) encrusting the periplasm. We investigated the connection of Fe biomineralization with carbon assimilation at the single cell level, using a combination of electron microscopy and Nano-Secondary Ion Mass Spectrometry. Our analyses revealed strong individual heterogeneities of Fe biomineralization. Noteworthy, a small proportion of cells remaining free of any precipitate persisted even at advanced stages of biomineralization. Using pulse chase experiments with (13)C-acetate, we provide evidence of individual phenotypic heterogeneities of carbon assimilation, correlated with the level of Fe biomineralization. Whereas non- and moderately encrusted cells were able to assimilate acetate, higher levels of periplasmic encrustation prevented any carbon incorporation. Carbon assimilation only depended on the level of Fe encrustation and not on the nature of Fe minerals precipitated in the cell wall. Carbon assimilation decreased exponentially with increasing cell-associated Fe content. Persistence of a small proportion of non-mineralized and metabolically active cells might constitute a survival strategy in highly ferruginous environments. Eventually, our results suggest that periplasmic Fe biomineralization may provide a signature of individual metabolic status, which could be looked for in the fossil record and in modern environmental samples.
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Affiliation(s)
- Jennyfer Miot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie – Sorbonne Universités, CNRS UMR 7590, IRD 206Paris, France
| | - Laurent Remusat
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie – Sorbonne Universités, CNRS UMR 7590, IRD 206Paris, France
| | - Elodie Duprat
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie – Sorbonne Universités, CNRS UMR 7590, IRD 206Paris, France
| | - Adriana Gonzalez
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie – Sorbonne Universités, CNRS UMR 7590, IRD 206Paris, France
| | - Sylvain Pont
- Département des Collections, Muséum National d’Histoire NaturelleParis, France
| | - Mélanie Poinsot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie – Sorbonne Universités, CNRS UMR 7590, IRD 206Paris, France
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Zhang H, Wang H, Yang K, Chang Q, Sun Y, Tian J, Long C. Autotrophic denitrification with anaerobic Fe(2+) oxidation by a novel Pseudomonas sp. W1. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2015; 71:1081-1087. [PMID: 25860712 DOI: 10.2166/wst.2015.071] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In the present study, a novel Pseudomonas sp. W1 was characterized in terms of its ability to perform nitrate removal coupled with anaerobic Fe⁻¹ oxidation under autotrophic growth condition. The effects of operating parameters with respect to the initial solution pH, temperature and initial Fe⁻¹ concentration on nitrate removal were investigated by central composite design. Based on the results of response surface methodology, the maximal nitrate removal efficiency was achieved under the following conditions: pH 7.0, temperature 30 °C and initial Fe⁻¹ concentration 1,100 mg L⁻¹. Under this optimal condition and with an initial NO(3)(-)-N concentration of 55 mg L⁻¹, this strain could remove NO(3)(-)-N with 90% reduction of NO(3)(-)-N, corresponding to oxidizing Fe⁻¹ with 71% oxidation of Fe⁻¹ after 7 days of incubation. The result of kinetic evaluation indicated that this bacterium showed significant substrate affinity to both NO(3)(-)-N and Fe⁻¹.
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Affiliation(s)
- Huining Zhang
- School of Civil Engineering, Wuhan University, Wuhan 430072, China E-mail:
| | - Hongyu Wang
- School of Civil Engineering, Wuhan University, Wuhan 430072, China E-mail:
| | - Kai Yang
- School of Civil Engineering, Wuhan University, Wuhan 430072, China E-mail:
| | - Qing Chang
- School of Civil Engineering, Wuhan University, Wuhan 430072, China E-mail:
| | - Yuchong Sun
- Northeast Electric Power Design Institute, Changchun 130000, China
| | - Jun Tian
- Central and Southern China Municipal Engineering Design and Research Institute Co., Ltd, Wuhan 430010, China
| | - Chengli Long
- Central and Southern China Municipal Engineering Design and Research Institute Co., Ltd, Wuhan 430010, China
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48
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Nitrate removal by a novel autotrophic denitrifier (Microbacterium sp.) using Fe(II) as electron donor. ANN MICROBIOL 2014. [DOI: 10.1007/s13213-014-0952-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
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49
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Melton ED, Stief P, Behrens S, Kappler A, Schmidt C. High spatial resolution of distribution and interconnections between Fe- and N-redox processes in profundal lake sediments. Environ Microbiol 2014; 16:3287-303. [DOI: 10.1111/1462-2920.12566] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Accepted: 07/05/2014] [Indexed: 11/29/2022]
Affiliation(s)
- Emily D. Melton
- Geomicrobiology; Center for Applied Geosciences; University of Tübingen; Tübingen 72076 Germany
| | - Peter Stief
- Microsensor Research Group; Max Planck Institute for Marine Microbiology; Bremen Germany
| | - Sebastian Behrens
- Geomicrobiology; Center for Applied Geosciences; University of Tübingen; Tübingen 72076 Germany
| | - Andreas Kappler
- Geomicrobiology; Center for Applied Geosciences; University of Tübingen; Tübingen 72076 Germany
| | - Caroline Schmidt
- Geomicrobiology; Center for Applied Geosciences; University of Tübingen; Tübingen 72076 Germany
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Potential role of nitrite for abiotic Fe(II) oxidation and cell encrustation during nitrate reduction by denitrifying bacteria. Appl Environ Microbiol 2013; 80:1051-61. [PMID: 24271182 DOI: 10.1128/aem.03277-13] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Microorganisms have been observed to oxidize Fe(II) at neutral pH under anoxic and microoxic conditions. While most of the mixotrophic nitrate-reducing Fe(II)-oxidizing bacteria become encrusted with Fe(III)-rich minerals, photoautotrophic and microaerophilic Fe(II) oxidizers avoid cell encrustation. The Fe(II) oxidation mechanisms and the reasons for encrustation remain largely unresolved. Here we used cultivation-based methods and electron microscopy to compare two previously described nitrate-reducing Fe(II) oxidizers ( Acidovorax sp. strain BoFeN1 and Pseudogulbenkiania sp. strain 2002) and two heterotrophic nitrate reducers (Paracoccus denitrificans ATCC 19367 and P. denitrificans Pd 1222). All four strains oxidized ∼8 mM Fe(II) within 5 days in the presence of 5 mM acetate and accumulated nitrite (maximum concentrations of 0.8 to 1.0 mM) in the culture media. Iron(III) minerals, mainly goethite, formed and precipitated extracellularly in close proximity to the cell surface. Interestingly, mineral formation was also observed within the periplasm and cytoplasm; intracellular mineralization is expected to be physiologically disadvantageous, yet acetate consumption continued to be observed even at an advanced stage of Fe(II) oxidation. Extracellular polymeric substances (EPS) were detected by lectin staining with fluorescence microscopy, particularly in the presence of Fe(II), suggesting that EPS production is a response to Fe(II) toxicity or a strategy to decrease encrustation. Based on the data presented here, we propose a nitrite-driven, indirect mechanism of cell encrustation whereby nitrite forms during heterotrophic denitrification and abiotically oxidizes Fe(II). This work adds to the known assemblage of Fe(II)-oxidizing bacteria in nature and complicates our ability to delineate microbial Fe(II) oxidation in ancient microbes preserved as fossils in the geological record.
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