Intensified bioleaching of chalcopyrite by communities with enriched ferrous or sulfur oxidizers

Combined impact of antibiotics and Cr(VI) on antibiotic resistance, ARGs, and growth of Bacillussp. SH-1: A functionl analysis from gene to protease

The simultaneous selection of antibiotic resistance genes (ARGs) induced by heavy metals and antibiotics has emerged as a growing environmental problem. This study investigated the combined effects of chromium (Cr(VI)) and antibiotics on the ARGs of Bacillus cereus SH-1. As Cr(VI) concentration increased, it triggered reactive oxygen species oxidative stress in SH-1, increased antioxidant enzyme activity, enhanced plasmid conjugative transfer, and reduced the efficiency of Cr(VI) removal by SH-1. Antibiotic resistance varied with increasing tetracycline and amoxicillin minimum inhibitory concentrations (MICs), whereas azithromycin and chloramphenicol MICs decreased with Cr(VI) induction. The overexpression of eight genes of the HAE-1 family of efflux pumps was detected using metagenomics and proteomics. Co-contamination with Cr(VI) and antibiotics has led to the emergence and spread of antibiotic-resistant bacteria. Therefore, resistance gene contamination resulting from Cr(VI)-polluted environments cannot be overlooked.

Differential surface modification mechanism of chalcopyrite and pyrite by Thiobacillus ferrooxidans and its response to bioflotation

Mineral processing encounters the challenge of separating chalcopyrite and pyrite, with the conventional high alkali process characterized by issues such as large dosages of reagents, complex procedures, and environmental pollution. This study addresses this challenge by isolating and enriching Thiobacillus ferrooxidans (T·f) from acidic mine drainage, employing it as a biosurfactant. The modification mechanism of T·f was thoroughly analyzed. Fe dissolution through biological oxidation formed a passivation layer (jarosite [KFe3(SO4)2(OH)6], elemental sulfur (S0), and metal sulfides (Cu/Fe-S) on the surface of minerals. Metal oxides, hydroxides, and sulfates were detected on the surface of two minerals, but the difference was that elemental sulfur (S0) and copper sulfide (Cu-S) were detected on the surface of chalcopyrite. elucidating the fundamental reason for the significant difference in surface hydrophobicity between chalcopyrite and pyrite. T·f has been successfully used as a biosurfactant to achieve copper-sulfur separation.

Responses of microbial community to geochemical parameters on vertical depth in bioheap system of low-grade copper sulfide

Monitoring of the microbial community in bioleaching system is essential for control process parameters and enhance the leaching efficiency. Due to the difficulty of sampling, microbial distribution, community succession and bioleaching activity along the vertical depth of bioleaching heaps remain unresolved. This study investigated the geochemical parameters and microbial community structure along a depth profile in a bioleaching heap and leachate. 80 ore samples at different heap depths and 9 leaching solution samples from three bioheaps of Zijin Copper Mine were collected. Microbial composition, mineral types and geochemical parameters of these samples were analyzed by 16S rRNA high-throughput sequencing and a series of chemical measurement technologies. The results revealed that the pH, Cu, Fe and the total sulfur contents were the major factors shaping the composition of the microbial communities in the bioleaching system. The extent of mineral oxidation increased as the sample depth increases, followed by the increasing of sulfur oxidizers. The abundance of sulfur and iron oxidizers including members of Acidithiobacillus, Sulfobacillus and Acidiferrobacter were significantly higher in the leaching heap than in the leaching solution, meanwhile, they showed strong positive interactions with other members within the same genera and iron oxidizer Leptospirillum and Ferroplasma. Besides, Acidithiobacillus negatively interacted with heterotrophs such as Sphingobium, Exiguobacterium, Brevundimonas and so on. On the contrast, members of Leptospirillum and unclassified Archaea were significantly abundant in the leaching solution and revealed strong interactions with members of Thermoplasmatales. The main conclusion of this study, especially the leaching potential of microorganisms prevailing in bioheaps and their relationships with geochemical factors, provides theoretical guidance for future process design such as the control of processing parameters and microbial community in heap leaching.

Divergent prokaryotic microbial assembly, co-existence patterns and functions in surrounding river sediments of a Cu-polymetallic deposit in Tibet

The exploitation of polymetallic deposits produces large amounts of mine drainage, which poses great challenges to the surrounding aquatic ecosystem. However, the prokaryotic microbial community assembly and co-existence patterns in the polluted area are poorly understood, especially in high-altitude localities. Herein, we investigated the prokaryotic microbial assembly, co-existence patterns and their potential functional responses in surrounding river sediments of a Cu-polymetallic deposit in Tibet. The sediments from mine drainage and surrounding tributaries exhibited distinct geochemical gradients, especially the changes in Cu content. The microbial community structure changed significantly, accompanied by decreased richness and diversity with increased Cu content. Interestingly, the relative abundances of some potential functional bacteria (e.g., Planctomycetota) actually increased as the Cu levels raised. In low contaminated area, ecological drift was the most important assembly process, whereas deterministic processes gained importance with pollution levels. Meanwhile, negative interactions in co-occurrence networks were more frequent with higher modularity and reduced keystone taxa in high contaminated area. Notably, the functions related to ABC transporters and quorum sensing (QS) were more abundant with high Cu content, which helped bacteria work together to cope with the stressful environment. Taken together, the physicochemical gradients dominated by Cu content drove the distribution, assembly and co-existence patterns of microbial communities in surrounding river sediments of a Cu-polymetallic deposit. These findings provide new insights into the maintenance mechanisms of prokaryotic microbial communities in response to heavy metal stress at high altitudes.

Genetic engineering of extremely acidophilic Acidithiobacillus species for biomining: Progress and perspectives

With global demands for mineral resources increasing and ore grades decreasing, microorganisms have been increasingly deployed in biomining applications to recover valuable metals particularly from normally considered waste, such as low-grade ores and used consumer electronics. Acidithiobacillus are a genus of chemolithoautotrophic extreme acidophiles that are commonly found in mining process waters and acid mine drainage, which have been reported in several studies to aid in metal recovery from bioremediation of metal-contaminated sites. Compared to conventional mineral processing technologies, biomining is often cited as a more sustainable and environmentally friendly process, but long leaching cycles and low extraction efficiency are main disadvantages that have hampered its industrial applications. Genetic engineering is a powerful technology that can be used to enhance the performance of microorganisms, such as Acidithiobacillus species. In this review, we compile existing data on Acidithiobacillus species' physiological traits and genomic characteristics, progresses in developing genetic tools to engineer them: plasmids, shutter vectors, transformation methods, selection markers, promoters and reporter systems developed, and genome editing techniques. We further propose genetic engineering strategies for enhancing biomining efficiency of Acidithiobacillus species and provide our perspectives on their future applications.

Green extraction of nickel and valuable metals from pyrrhotite samples with different crystallographic structures through acidophilic bioleaching

Nowadays, due to the strategic status of nickel in the global market, utilizing its disregarded resources like low-grade nickel containing pyrrhotite is of significant importance. A comprehensive set of experiments and analyses were performed to determine the bioleaching capability and mechanism for nickel extraction from hexagonal and monoclinic pyrrhotite. Over 95% Ni extraction was achieved from the hexagonal pyrrhotite sample. Ni extraction from the monoclinic sample reached its maximum value of 67% and 90% at 3% pulp density, with mixed mesophilic and moderately thermophilic cultures, respectively. Characterization analyses indicated that jarosite and elemental sulfur formation in mixed mesophilic bioleaching reduced the samples' bio-oxidation rate and metal dissolution. The kinetics study revealed that the controlling step in thermophilic bioleaching is the chemical reaction; however, the mixed control model was best fitted on mesophilic data. Electrochemistry studies confirmed bioleaching results and indicated that monoclinic pyrrhotite's oxidation rate under the operating conditions is faster than hexagonal pyrrhotite, and the temperature positively correlates with the oxidation rate. Toxicity assessment analysis showed that the final residues of both bioleached samples could be considered environmentally safe.

Copper extraction from low-grade chalcopyrite in a bioleaching column assisted by bioelectrochemical system

Low-grade ores, tailings, and solid wastes contain small amounts of valuable heavy metals. Improper disposal of these substances results in the waste of resources and contamination of soil or groundwater. Accordingly, the treatment and recycling of low-grade ores, tailings, and solid wastes attracted much attention recently. Bioelectrochemical system, an innovative technology for the removal and recovery of heavy metals, has been further developed and applied in recent years. In the current study, the low-grade chalcopyrite was bioleached with the assistance of microbial fuel cells. Copper extraction along with electricity generation from the low-grade chalcopyrite was achieved in the column bioleaching process assisted by MFCs. Results showed that after 197 days bioleaching of low-grade chalcopyrite, 423.9 mg copper was extracted from 200 g low-grade chalcopyrite and the average coulomb production reached 1.75 C/d. The introduction of MFCs into bioleaching processes promoted the copper extraction efficiency by 2.7 times (3.62% vs. 1.33%), mainly via promoting ferrous oxidation, reducing ORP, and stimulating bacterial growth. This work provides a feasible method for the treatment and recycling of low-grade ores, tailings, and solid wastes. But balancing energy consumption of aeration and circulation frequency and chemical consumption of acid to improve the copper extraction efficiency need further investigation.

Growth in ever-increasing acidity condition enhanced the adaptation and bioleaching ability of Leptospirillum ferriphilum

Low pH eliminated the jarosite accumulation and improved the interfacial reaction rate during the bioleaching process. However, high acidity tends to make environments less hospitable, even for organisms that live in extreme places, so a great challenge existed for bioleaching at low pH conditions. This study demonstrated that the adaption and bioleaching ability of Leptospirillum ferriphilum could be improved after the long-term adaptive evolution of the community under acidity conditions. It was found that the acidity-adapted strain showed robust ferrous iron oxidation activity in wider pH, high concentration of ferrous iron, and lower temperature. Although the enhancement for heavy metal tolerance was limited, the resistance for MgSO₄, Na₂SO₄, and organic matter was stimulative. More importantly, both pyrite and printed circuit board bioleaching revealed the higher bioleaching ability of the acid-resistant strain. These adaptation and bioleaching details provided an available approach for the improvement of bioleaching techniques.

Microbial recovery of critical metals from secondary sources

The continuous development of technologies involving critical metals, both in Europe and over the world, and geopolitical challenges in areas rich in critical metal sources, imposed increased research efforts to recover them from secondary sources, by eco-efficient processes. Yet, microbes-metal interactions are not sufficiently exploited to recover metals from secondary sources, although they are already used in ore extraction. This review examines and compare strategies and processes involving microorganisms for critical metals recovery, since conventional physico-chemical methods are energy-intensive and often polluting. Two groups of microbial assisted recovery processes are discussed: metal mobilization from metal bearing waste, and selective metal separation from leaching solutions by immobilization on microbial biomass. Because most of the identified microbial technologies are developed on laboratory scale, the increase of biorecovery efficiency is compulsory for enhancing scaling-up potential. Future developments focused on novel microorganisms and high-performance strategies for critical metal recovery by microbial processes are considered.

The interaction of acidophiles driving community functional responses to the re-inoculated chalcopyrite bioleaching process

Re-inoculation was an effective way to improve bioleaching efficiency by enhancing the synergetic effects of biogenic Fe³⁺ coupling with S⁰ oxidation. However, the complex microbial interactions after re-inoculation have received far less attention, which was crucial to the bioleaching performances. Herein, the enriched ferrous oxidizers (FeO) or sulfur oxidizers (SO) were inoculated to chalcopyrite microcosm, then they were crossly re-inoculated again to characterize the interspecific interaction patterns. The results showed that the dominant species in Fe groups were Acidithiobacillus ferrooxidans, while A. thiooxidans predominated in S groups. Introducing FeO resulted in a great disturbance by shifting the community diversity and evenness significantly (p < 0.05). In comparison, the communities intensified by SO maintained the original composition and structures. Microbial networks were constructed positively and modularly. The networks intensified by FeO were less connected and complex with less nodes and edges, but showed faster responses to the re-inoculation disturbance reflected by shorter average path length. Interestingly, the genus Leptospirillum were identified as keystones in S groups, playing critical roles in iron-oxidizing with lots of sulfur oxidizers. The introduced sulfur oxidizers enhanced microbial cooperation, formed robust community with strong bio-dissolution capability, and harbored the highest bioleaching efficiency. These findings improved our understanding about the acidophiles interactions, which drive community functional responses to the re-inoculated bioleaching process.

Biofilm Formation Is Crucial for Efficient Copper Bioleaching From Bornite Under Mesophilic Conditions: Unveiling the Lifestyle and Catalytic Role of Sulfur-Oxidizing Bacteria

Biofilm formation within the process of bioleaching of copper sulfides is a relevant aspect of iron- and sulfur-oxidizing acidophilic microorganisms as it represents their lifestyle in the actual heap/dump mining industry. Here, we used biofilm flow cell chambers to establish laminar regimes and compare them with turbulent conditions to evaluate biofilm formation and mineralogic dynamics through QEMSCAN and SEM-EDS during bioleaching of primary copper sulfide minerals at 30°C. We found that laminar regimes triggered the buildup of biofilm using Leptospirillum spp. and Acidithiobacillus thiooxidans (inoculation ratio 3:1) at a cell concentration of 10⁶ cells/g mineral on bornite (Cu₅FeS₄) but not for chalcopyrite (CuFeS₂). Conversely, biofilm did not occur on any of the tested minerals under turbulent conditions. Inoculating the bacterial community with ferric iron (Fe³⁺) under shaking conditions resulted in rapid copper recovery from bornite, leaching 40% of the Cu content after 10 days of cultivation. The addition of ferrous iron (Fe²⁺) instead promoted Cu recovery of 30% at day 48, clearly delaying the leaching process. More efficiently, the biofilm-forming laminar regime almost doubled the leached copper amount (54%) after 32 days. In-depth inspection of the microbiologic dynamics showed that bacteria developing biofilm on the surface of bornite corresponded mainly to At. Thiooxidans, while Leptospirillum spp. were detected in planktonic form, highlighting the role of biofilm buildup as a means for the bioleaching of primary sulfides. We finally propose a mechanism for bornite bioleaching during biofilm formation where sulfur regeneration to sulfuric acid by the sulfur-oxidizing microorganisms is crucial to prevent iron precipitation for efficient copper recovery.

Bioleaching and Electrochemical Behavior of Chalcopyrite by a Mixed Culture at Low Temperature

Low-temperature biohydrometallurgy is implicated in metal recovery in alpine mining areas, but bioleaching using microbial consortia at temperatures <10°C was scarcely discussed. To this end, a mixed culture was used for chalcopyrite bioleaching at 6°C. The mixed culture resulted in a higher copper leaching rate than the pure culture of Acidithiobacillus ferrivorans strain YL15. High-throughput sequencing technology showed that Acidithiobacillus spp. and Sulfobacillus spp. were the mixed culture's major lineages. Cyclic voltammograms, potentiodynamic polarization and electrochemical impedance spectroscopy unveiled that the mixed culture enhanced the dissolution reactions, decreased the corrosion potential and increased the corrosion current, and lowered the charge transfer resistance and passivation layer impedance of the chalcopyrite electrode compared with the pure culture. This study revealed the mechanisms via which the mixed culture promoted the chalcopyrite bioleaching.

Simultaneously enhance iron/sulfur metabolism in column bioleaching of chalcocite by pyrite and sulfur oxidizers based on joint utilization of waste resource

In chalcocite (Cu₂S) bioleaching, the lack of iron metabolism is a key restricting factor. As the most common sulfide mineral, pyrite (FeS₂) can release Fe(Ⅱ) and compensate for the iron metabolism deficiency in chalcocite bioleaching. The bioleaching of chalcocite in an imitated industrial system was improved by enhancing the iron-sulfur metabolism simultaneously using pyrite and sulfur oxidizers based on the joint utilization of waste resources, while the bioleaching performance and community structure in the leachate were systematically investigated. Due to the active sulfur/iron metabolism, the pH reached 1.2, and Fe³⁺ was increased by 77.78%, while the biomass of planktonic cells was improved to 2.19 × 10⁷ cells/mL. Fourier transform infrared reflection (FTIR) and X-ray diffraction (XRD) analysis results showed that more iron-sulfur crystals were produced due to more active iron-sulfur metabolism. Scanning electron microscopy (SEM) revealed that many derivative particles and corrosion marks appeared on the surface of the ore, implying that the mineral-microbe interaction was strengthened. Confocal laser scanning microscopy (CLSM) showed the accumulation of cells and extracellular polymeric substances (EPS) on the ore surface, indicating a stronger contact leaching mechanism. Furthermore, the community structure and canonical correspondence analysis (CCA) demonstrated that the introduction of sulfur-oxidizing bacteria and pyrite could maintain the diversity of dominant leaching microorganisms at a high level. Sulfobacillus (27.75%) and Leptospirllillum (20.26%) were the dominant sulfur-oxidizing and iron-oxidizing bacteria during the bioleaching process. With the accumulation of multiple positive effects, the copper ion leaching rate was improved by 44.8%. In general, this new type of multiple intervention strategy can provide an important guide for the bioleaching of low-grade ores.

Intensified bioleaching of chalcopyrite concentrate using adapted mesophilic culture in continuous stirred tank reactors

The bioleaching of chalcopyrite concentrate, intensified by the adapted mesophilic culture in the continuous stirred tank reactors (CSTR) was investigated. The cumulative bioleaching efficiency of copper was found to be increased from 34.8% to 49.3% in CSTR-1, 40.3% to 71.2% in CSTR-2, and 44.3% to 73.8% in CSTR-3, while the temperature was elevated from 30 to 37 °C, respectively; whereas, the pulp density (10%, w/v), agitation speed (350 rpm), aeration (400 cc/min), and retention time (7 days across the three reactors) were also optimized to keep constant. Further, the activation energy calculated for copper dissolution under the continuous flow indicated that the surface-diffusion was the overall rate-limiting step for the bioleaching process. Instrumental analysis of solid samples could reveal the degradation pathways of chalcopyrite bioleaching as: CuFeS₂ → Cu₂S → Cu_0.3333Fe_0.6667S → H₉Fe₃O₁₈S₈. It follows a complex mechanism that includes the occurrence of polysulfide and cooperative mechanism along with the passivation onto mineral surfaces.

Efficient removal of heavy metals by synergistic actions of microorganisms and waste molasses

In this study, two bacteria strains (Enterobacter sp. SL and Acinetobacter sp. SL-1) and waste molasses (carbon source) were used to remove Zn(II), Cd(II), Cr(VI), and Cr(Total) in the liquid solution (87 mg·L). The results showed the removal efficiencies of Cr(Total) and Cr(VI) could reach over 98.00% after reaction, and the removal efficiencies of Zn(II) and Cd(II) were all about 90.00% by the synergistic actions of microorganisms and waste molasses. In this process, waste molasses provides nutrients for microorganisms and has the characteristics and capability of Cr, Zn, and Cd. Microorganisms mainly use biological adsorption (36.95% and 45.69%) and metabolism (24.37% and 17.05% by producing humic-acid and fulvic-acid like substances) to remove Zn(II) and Cd(II), while waste molasses could to remove Cr(Total) (81.24%) and Cr(VI) (75.90%). This study has potential application value for the treatment of wastewater containing high concentrations of heavy metals.

Leaching Chalcopyrite with an Imidazolium-Based Ionic Liquid and Bromide

The unique properties of ionic liquids (ILs) drive the growing number of novel applications in different industries. The main features of ILs are high thermal stability, recyclability, low flash point, and low vapor pressure. This study investigated pure chalcopyrite dissolution in the presence of the ionic liquid 1-butyl-3-methylimidazolium hydrogen sulfate, [BMIm]HSO4, and a bromide-like complexing agent. The proposed system was compared with acid leaching in sulfate media with the addition of chloride and bromide ions. The results demonstrated that the use of ionic liquid and bromide ions improved the chalcopyrite leaching performance. The best operational conditions were at a temperature of 90 °C, with an ionic liquid concentration of 20% and 100 g/L of bromide.

Effect of Introduction of Exogenous Strain Acidithiobacillus thiooxidans A01 on Structure and Function of Adsorbed and Planktonic Microbial Consortia During Bioleaching of Low-Grade Copper Sulfide

The introduction of Acidithiobacillus thiooxidans A01 strengthens the positive interactions between physiologically distinct microorganisms and enhances the bioleaching ability of the consortium. However, the effect of introducing an exogenous strain, A. thiooxidans A01 on the structure and function of the adsorbed and planktonic microbial consortia during bioleaching of low-grade copper sulfide remains unclear. In this study, A. thiooxidans A01 was introduced into an indigenous leaching microbial community on the 0th (group B), 24th (group C), and 36th day (group D). Results revealed that the copper leaching efficiency was highest in group D, in which the Cu2+ concentration in the solution reached 251.5 mg/L on day 48, which was 18.5% higher than that of the control (group A, no addition of A. thiooxidans A01). Restriction fragment length polymorphism (RFLP) analysis of the microbial community in group D revealed the presence of Leptospirillum ferriphilum, Acidithiobacillus ferrooxidans, Acidithiobacillus caldus, Sulfobacillus sp., Acidiphilium spp., and Acidithiobacillus albertensis before introduction of A. thiooxidans A01 on the 36th or 48th day; however, A. albertensis was absent on day 48 in group A. Further, the proportion of dominant A. caldus, L. ferriphilum, and A. ferrooxidans became altered. The results of real-time PCR in group D showed that A. thiooxidans A01 was primarily adsorbed on the surface of the ore, with the adsorption reaching the maxima on day 42; while the free A. thiooxidans A01 in solution grew slowly, reaching its maximum concentration on day 45. Compared with that in the control group, the abundance of both free and attached A. caldus and Sulfobacillus sp. decreased following the introduction of A. thiooxidans A01, while that of L ferriphilum, A. ferrooxidans, and Acidiphilium sp. increased. Functional gene arrays data indicated that the abundance of genes involved in sulfide and iron oxidation in L. ferriphilum and A. ferrooxidans, as well as that of the metal (loid) resistance genes of A. ferrooxidans, L. ferriphilum, and Acidiphilium sp. increased, while the abundance of genes involved in sulfur metabolism in A. caldus and Sulfolobus spp. decreased. Taken together, these results provide useful information for application of bioleaching of copper sulfide in industry.

Combined effects of jarosite and visible light on chalcopyrite dissolution mediated by Acidithiobacillus ferrooxidans

Although jarosite and visible light are important factors for the formation of acid mine drainage (AMD), the effects of combined jarosite and visible light on chalcopyrite biodissolution have not been explored until now. In order to fill this knowledge gap, the combined effects of jarosite and visible light on chalcopyrite dissolution mediated by Acidithiobacillus ferrooxidans were investigated. The results indicated that jarosite and visible light could significantly accelerate chalcopyrite biodissolution, thus releasing more copper ions, iron ions and producing more acid. This in turn suggests enhanced generation of AMD under these conditions. Biodissolution results, mineral surface morphology, mineralogical phase and elemental composition analyses revealed that the promotion of chalcopyrite dissolution by additional jarosite and visible light was mainly attributed to the acceleration of ferric iron/ferrous iron cycling and the inhibition of the formation of a passivation layer (jarosite and S_n^2-/S⁰) on the surface of chalcopyrite. This study provides a better understanding of the effects of jarosite and visible light on chalcopyrite biodissolution. In the future, the influences of jarosite and visible light on chalcopyrite dissolution should be considered in AMD evaluation to ensure reliability.

Enhancing microbial community performance on acid resistance by modified adaptive laboratory evolution

A new strategy of three-step adaptive laboratory evolution (ALE) was developed to enhance the bioleaching performance of moderately thermophilic consortia. Through consortium construction, directed evolution and chemostat selection, an improved consortium (ALEend) that composed of Leptospirillum ferriphilum (80.32%), Sulfobacillus thermosulfidooxidans (15.82%) and Ferroplasma thermophilum (3.86%) was obtained, showing ferrous iron oxidation rate of 500 mgL^-1h^-1 and biomass production of 2.0 × 10⁸ cells/mL at pH 0.75. During batch culturing, the ALEend consortium exhibited stable ferrous iron oxidation in wider conditions. PCA indicated that the communities were similar under fluctuating culture conditions, which demonstrated the stable community structure and the reinforced synergistic interactions resulting in the enhanced community performance. Pyrite bioleaching conducted at pH 1.5 and 0.75 revealed that the ALEend consortium extracted 26% and 55% more total iron relative to the original consortium. These findings indicated that the modified ALE may be a promising strategy for microbial community modification to enhance bioleaching.

Bioleaching of copper sulfide minerals assisted by microbial fuel cells

A proof-of-concept of copper sulfide mineral bioleaching assisted by microbial fuel cells (MFCs) was demonstrated in current study. Simultaneous copper extraction and electricity generation were obtained in this bioleaching process, providing a novel approach for copper sulfide mineral bioleaching. Compared with bioleaching of a mixture of chalcopyrite concentrate and porphyry molybdenite, bioleaching of chalcopyrite concentrate achieved higher coulomb production but lower copper extraction concentration. After 320 days bioleaching of chalcopyrite concentrate, the copper ion concentration in bioleaching solution was 244.2 mg/L and the average coulomb production was 4.4 ± 2.2C/d. The introduction of MFCs into bioleaching processes promoted copper extraction, mainly via the decrease of pH deriving from the anodic sulfide/sulfur oxidation.

Optimization of the Heap Leaching Process through Changes in Modes of Operation and Discrete Event Simulation

The importance of mine planning is often underestimated. Nonetheless, it is essential in achieving high performance by identifying the potential value of mineral resources and providing an optimal, practical, and realistic strategy for extraction, which considers the greatest quantity of options, materials, and scenarios. Conventional mine planning is based on a mostly deterministic approach, ignoring part of the uncertainty presented in the input data, such as the mineralogical composition of the feed. This work develops a methodology to optimize the mineral recovery of the heap leaching phase by addressing the mineralogical variation of the feed, by alternating the mode of operation depending on the type of ore in the feed. The operational changes considered in the analysis include the leaching of oxide ores by adding only sulfuric acid (H2SO4) as reagent and adding chloride in the case of sulfide ores (secondary sulfides). The incorporation of uncertainty allows the creation of models that maximize the productivity, while confronting the geological uncertainty, as the extraction program progresses. The model seeks to increase the expected recovery from leaching, considering a set of equiprobable geological scenarios. The modeling and simulation of this productive phase is developed through a discrete event simulation (DES) framework. The results of the simulation indicate the potential to address the dynamics of feed variation through the implementation of alternating modes of operation.

Dissolution and Passivation of Chalcopyrite during Bioleaching by Acidithiobacillus ferrivorans at Low Temperature

Our knowledge on the dissolution and passivation mechanisms of chalcopyrite during bioleaching at low temperature has been limited to date. In this study, an Acidithiobacillus ferrivorans strain with high tolerance to heavy metals and UV radiation was used for chalcopyrite bioleaching. At 6 °C, no apparent precipitate was detected on the mineral surface after bioleaching using a scanning electron microscope (SEM). X-ray diffraction (XRD) revealed that the ore residue contained only chalcopyrite and quartz. X-ray photoelectron spectroscopy (XPS) analysis revealed that the content of S0 on the mineral surface remained low and the ratio of SO42− decreased from 46.7% to 20.9%, but the amount of Sn2− increased from 10.4% to 21.4% after bioleaching. Expression of five critical iron- and sulfur-oxidation genes during bioleaching was analyzed using quantitative real-time PCR. The gene rusA had higher expression in the mid-log phase than in the stationary phase but hdrA and cyoC1 showed an opposite trend. All genes had higher expression at 6 °C than at 28 °C, so as to compensate for the decline in the enzyme activities. The study revealed that polysulfide was the most plausible passivating substance at 6 °C, and the strain can maintain the iron- and sulfur-oxidation activities during low-temperature bioleaching.

Metal biorecovery and bioremediation: Whether or not thermophilic are better than mesophilic microorganisms

Metal mobilization and immobilization catalyzed by microbial action are key processes in environmental biotechnology. Metal mobilization from ores, mining wastes, or solid residues can be used for recovering metals and/or remediating polluted environments; furthermore, immobilization reduces the migration of metals; cleans up effluents plus ground- and surface water; and, moreover, can help to concentrate and recover metals. Usually these processes provide certain advantages over traditional technologies such as more efficient economical and environmentally sustainable results. Since elevated temperatures typically increase chemical kinetics, it could be expected that bioprocesses should also be enhanced by replacing mesophiles with thermophiles or hyperthermophiles. Nevertheless, other issues like process stability, flexibility, and thermophile-versus-mesophile resistance to acidity and/or metal toxicity should be carefully considered. This review critically analyzes and compares thermophilic and mesophilic microbial performances in recent and selected representative examples of metal bioremediation and biorecovery.

Metatranscriptomics reveals microbial adaptation and resistance to extreme environment coupling with bioleaching performance

Chalcopyrite bioleaching by 2, 4 and 6 acidophilic strains with the same inoculation density were studied, respectively. The results indicated that the 6-strain community firstly adapted to bioleaching environment, dissolved the chalcopyrite rapidly and maintained an efficient work until late stage. Transcriptome profiles of the 6-strain community at 6th and 30th day during bioleaching process were investigated by RNA-seq. Comparative transcriptomics identified 226 and 737 significantly up-regulated genes at early and late stage, respectively. Gene annotation results revealed that microorganisms adapted to the oligotrophic environment by enhancing cell proliferation, catalytic activation and binding action to maintain their life activities at early stage, and genes related to signal transduction, localization and transporter were highly expressed as an effective response to the stressful late stage. A graphical representation was presented to show how microorganisms adapted and resisted to the extreme environment by their inner functional properties and promoted the bioleaching efficiency.

Biological oxidation of iron sulfides

The biological oxidation of minerals and ores, called bioleaching, has been studied for the last decades to solubilize metals and recover them. In particular, iron sulfides are the most studied ores for an optimum extraction of different metals, such as copper or zinc. The use of chemolithotrophic bacteria, as Acidothiobacillus ferrooxidans, to oxidize both iron and sulfur species in aerobic conditions and at acidic pH shows promising results. In the field of heritage preservation, the development of "green" treatments is more and more studied. Waterlogged archeological wood presents an accumulation of iron sulfides within its structure, which, after exposition to oxygen, lead to salt precipitation and acidification and so to the degradation of the wooden artifact. A new extraction method, based on the dissolution of iron sulfides by the use of bacteria could be an alternative to the current chemical extraction methods, as being more respectful and ecological. While A. ferrooxidans is very effective in mines and groundwater, in the field of conservation-restoration of wood, Thiobacillus denitrificans is a better candidate as it grows at neutral pH, which is less aggressive for organic substrates (wood here). Preliminary studies show the efficiency of T. denitrificans for the dissolution of iron sulfides, as the concentration of nitrates used as electron donors decreases while the concentration of sulfates produced increases without degrading the wooden matrix. Long-term behavior should be studied to assess the stability of the artifacts after treatment.

Traits of Exogenous Species and Indigenous Community Contribute to the Species Colonization and Community Succession

Introducing exogenous species into an environment is an effective method to strengthen ecological functions. The traits of the exogenous species and the indigenous communities, as well as the resistance and subsequent succession of the community to exogenous species, are not well-understood. Here, three different functional consortia were introduced into two extremely acidic systems, leaching heap (LH) and leaching solution (LS), derived from the Zijin copper mine in China. The results showed that the structures of both LS and LH communities were affected by the three consortia, but not all the structural changes were in line with variations of community function. Among the three consortia, only the complementary sulfur oxidizers greatly enhanced copper extraction efficiency of LS (by 50.42%). This demonstrated that functional niche novelty gave exogenous species an advantage to occupy an ecological niche in a complementary manner, thus leading to successful colonization. The resistance to, and subsequent succession by, exogenous organisms varied between the two indigenous communities. More specifically, the LS community with low community diversity and simple composition was susceptible to exogenous species, and the community structural changes of LS were both divergent and irreversible. In comparison, the LH community with greater community diversity and more complex composition was more resistant to exogenous species, with the community structures showing a convergent trend over time despite different species being introduced. Therefore, we propose that diverse communities compete for resources more intensely with exogenous species and resist their introduction, and that communities with complex composition are able to cope with exogenous disturbances.