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Vadakkan K, Sathishkumar K, Raphael R, Mapranathukaran VO, Mathew J, Jose B. Review on biochar as a sustainable green resource for the rehabilitation of petroleum hydrocarbon-contaminated soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 941:173679. [PMID: 38844221 DOI: 10.1016/j.scitotenv.2024.173679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Revised: 05/27/2024] [Accepted: 05/29/2024] [Indexed: 06/10/2024]
Abstract
Petroleum pollution is one of the primary threats to the environment and public health. Therefore, it is essential to create new strategies and enhance current ones. The process of biological reclamation, which utilizes a biological agent to eliminate harmful substances from polluted soil, has drawn much interest. Biochars are inexpensive, environmentally beneficial carbon compounds extensively employed to remove petroleum hydrocarbons from the environment. Biochar has demonstrated an excellent capability to remediate soil pollutants because of its abundant supply of the required raw materials, sustainability, affordability, high efficacy, substantial specific surface area, and desired physical-chemical surface characteristics. This paper reviews biochar's methods, effectiveness, and possible toxic effects on the natural environment, amended biochar, and their integration with other remediating materials towards sustainable remediation of petroleum-polluted soil environments. Efforts are being undertaken to enhance the effectiveness of biochar in the hydrocarbon-based rehabilitation approach by altering its characteristics. Additionally, the adsorption, biodegradability, chemical breakdown, and regenerative facets of biochar amendment and combined usage culminated in augmenting the remedial effectiveness. Lastly, several shortcomings of the prevailing methods and prospective directions were provided to overcome the constraints in tailored biochar studies for long-term performance stability and ecological sustainability towards restoring petroleum hydrocarbon adultered soil environments.
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Affiliation(s)
- Kayeen Vadakkan
- Department of Biotechnology, St. Mary's College (Autonomous), Thrissur, Kerala 680020, India.
| | - Kuppusamy Sathishkumar
- Center for Global Health Research, Saveetha Medical College and Hospitals, Saveetha Institute of Medical and Technical Sciences (SIMATS), Saveetha University, Chennai 600077, India.
| | - Rini Raphael
- Department of Zoology, Carmel College (Autonomous), Mala, Kerala 680732, India
| | | | - Jennees Mathew
- Department of Chemistry, Morning Star Home Science College, Angamaly, Kerala 683589, India
| | - Beena Jose
- Department of Chemistry, Vimala College (Autonomous), Thrissur 680009, Kerala, India
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Ngo ACR, Celebi B, Hermann Hadewig SN, Mügge C, Tischler D. Selective pressure leads to an improved synthetic consortium fit for dye degradation. CHEMOSPHERE 2024; 361:142489. [PMID: 38825247 DOI: 10.1016/j.chemosphere.2024.142489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 05/17/2024] [Accepted: 05/29/2024] [Indexed: 06/04/2024]
Abstract
Microorganisms have great potential for bioremediation as they have powerful enzymes and machineries that can transform xenobiotics. The use of a microbial consortium provides more advantages in application point of view than pure cultures due to cross-feeding, adaptations, functional redundancies, and positive interactions among the organisms. In this study, we screened about 107 isolates for their ability to degrade dyes in aerobic conditions and without additional carbon source. From our screening results, we finally limited our synthetic consortium to Gordonia and Rhodococcus isolates. The synthetic consortium was trained and optimized for azo dye degradation using sequential treatment of small aromatic compounds such as phenols that act as selective pressure agents. After four rounds of optimization with different aims for each round, the consortium was able to decolorize and degrade various dyes after 48 h (80%-100% for brilliant black bn, methyl orange, and chromotrop 2b; 50-70% for orange II and reactive orange 16; 15-30% for chlorazol black e, reactive red 120, and allura red ac). Through rational approaches, we can show that treatment with phenolic compounds at micromolar dosages can significantly improve the degradation of bulky dyes and increase its substrate scope. Moreover, our selective pressure approach led to the production of various dye-degrading enzymes as azoreductase, laccase-like, and peroxidase-like activities were detected from the phenol-treated consortium. Evidence of degradation was also shown as metabolites arising from the degradation of methyl red and brilliant black bn were detected using HPLC and LC-MS analysis. Therefore, this study establishes the importance of rational and systematic screening and optimization of a consortium. Not only can this approach be applied to dye degradation, but this study also offers insights into how we can fully maximize microbial consortium activity for other applications, especially in biodegradation and biotransformation.
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Affiliation(s)
| | - Beyzanur Celebi
- Microbial Biotechnology, Ruhr Universität Bochum, Bochum, Germany
| | | | - Carolin Mügge
- Microbial Biotechnology, Ruhr Universität Bochum, Bochum, Germany
| | - Dirk Tischler
- Microbial Biotechnology, Ruhr Universität Bochum, Bochum, Germany
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Peng L, Hou J, Zhang Y, Wang B, Zhang Y, Zhao K, Wang Q, Christie P, Liu W, Luo Y. Metagenomic analysis of a thermophilic bacterial consortium and its use in the bioremediation of a petroleum-contaminated soil. CHEMOSPHERE 2024; 360:142379. [PMID: 38777200 DOI: 10.1016/j.chemosphere.2024.142379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 05/16/2024] [Accepted: 05/17/2024] [Indexed: 05/25/2024]
Abstract
Biodegradation is difficult at high temperatures due to the limited capacity of microorganisms to survive and function outside their optimum temperature range. Here, a thermophilic petroleum-degrading consortium was enriched from compost at a temperature of 55 °C. 16S rDNA and metagenomic techniques were used to analyze the composition of the consortium and the mechanisms of degradation. The consortium degraded 17000 mg total petroleum hydrocarbons (TPHs) L-1 with a degradation efficiency of 81.5% in 14 days. The consortium utilized a range of substrates such as n-hexadecane, n-docosane, naphthalene and pyrene and grew well over a wide range of pH (4-10) and salinity (0-90 g L-1). The hydrocarbon-degrading extremophilic consortium contained, inter alia, (relative abundance >1%) Caldibacillus, Geobacillus, Mycolicibacterium, Bacillus, Chelatococcus, and Aeribacillus spp. Metagenomic analysis was conducted to discover the degradation and environmental tolerance functional genes of the consortium. Two alkane hydroxylase genes, alkB and ladA, were found. A microcosm study shows that the consortium promoted the bioremediation of soil TPHs. The results indicate that the consortium may be a good candidate for the high-temperature bioremediation of petroleum-contaminated soils.
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Affiliation(s)
- Li Peng
- School of Environmental Science and Engineering, Nanjing Tech University, Nanjing, 210008, China; State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Jinyu Hou
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Yufeng Zhang
- School of Environmental Science and Engineering, Nanjing Tech University, Nanjing, 210008, China
| | - Beibei Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yun Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ke Zhao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Qingling Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Peter Christie
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Wuxing Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Yongming Luo
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
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Zhang F, Zhang D, Lou H, Li X, Fu H, Sun X, Sun P, Wang X, Bao M. Distribution, sources and ecological risks of PAHs and n-alkanes in water and sediments of typically polluted estuaries: Insights from the Xiaoqing River. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 364:121471. [PMID: 38878581 DOI: 10.1016/j.jenvman.2024.121471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 06/08/2024] [Accepted: 06/10/2024] [Indexed: 06/24/2024]
Abstract
Seasonal water and sediment samples were collected from the Xiaoqing River estuary and the neighboring sea to study the spatial and temporal distributions, sources and ecological risks of polycyclic aromatic hydrocarbons (PAHs) and n-alkanes. The results showed significant spatial and temporal differences in the concentrations of PAHs and n-alkanes under the influence of precipitation, temperature, and human activities. The concentrations of PAHs in water were lower in the wet season than in the dry season, and those in sediments were higher in the wet season than in the dry season. The concentrations of n-alkanes were higher in the rainy season than in the dry season for both water and sediments. The spatial distributions of PAHs and n-alkanes were estuarine > offshore. The concentration ranges of ∑PAHs in water and sediments were 230.66-599.86 ng/L and 84.51-5548.62 ng/g, respectively, in the wet season and 192.46-8649.55 ng/L and 23.39-1208.92 ng/g, respectively, in the dry season. The proportion of three-ring PAHs in water (57.03% and 78.27% in the wet and dry seasons, respectively) was high, followed by two-ring PAHs (27.31% and 13.59% in the wet and dry seasons, respectively). The proportion of four-ring PAHs was higher in sediments (24.79% and 32.20% in the wet and dry seasons, respectively). The ecological risk of PAHs assessed using the toxicity equivalent quotient and risk quotient was at moderate to moderately high risk levels. The high concentration of n-alkane fraction C16 (611.65-75594.58 ng/L) in the water is indicative of petroleum or other fossil fuel inputs. The main peaks of n-alkanes in river sediments were C27, C29 and C31, indicating higher inputs of plant sources. The sediments in the estuary showed dominance of both short-chain C16 and long-chain C25-C31, indicating a combined input of higher plants and petroleum. The diagnostic ratios of PAHs and n-alkanes indicated that their sources were mainly oil/coal/biomass combustion and petroleum spills attributed to frequent vehicular, vessel and mariculture activities. Given the potential ecological risks of PAHs and n-alkanes in water and sediments, future studies should focus on their bioaccumulation and biotoxicity.
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Affiliation(s)
- Feifei Zhang
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced, Ocean Study, Ocean University of China, Qingdao, 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao, 266100, China
| | - Dong Zhang
- Shouguang Marine Fishery Development Center ,Weifang, 262700, China
| | - Huawei Lou
- Shouguang Marine Fishery Development Center ,Weifang, 262700, China
| | - Xiaoyue Li
- Shouguang Marine Fishery Development Center ,Weifang, 262700, China
| | - Hongrui Fu
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced, Ocean Study, Ocean University of China, Qingdao, 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao, 266100, China
| | - Xiaojun Sun
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced, Ocean Study, Ocean University of China, Qingdao, 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao, 266100, China.
| | - Peiyan Sun
- Key Laboratory of Ecological Warning, Protection & Restoration for Bohai Sea, Ministry of Natural Resources, Qingdao, 266100, China
| | - Xinping Wang
- Key Laboratory of Ecological Warning, Protection & Restoration for Bohai Sea, Ministry of Natural Resources, Qingdao, 266100, China
| | - Mutai Bao
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced, Ocean Study, Ocean University of China, Qingdao, 266100, China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao, 266100, China.
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Aso RE, Obuekwe IS. Polycyclic aromatic hydrocarbon: underpinning the contribution of specialist microbial species to contaminant mitigation in the soil. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:654. [PMID: 38913190 DOI: 10.1007/s10661-024-12778-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 06/06/2024] [Indexed: 06/25/2024]
Abstract
The persistence of PAHs poses a significant challenge for conventional remediation approaches, necessitating the exploration of alternative, sustainable strategies for their mitigation. This review underscores the vital role of specialized microbial species (nitrogen-fixing, phosphate-solubilizing, and biosurfactant-producing bacteria) in tackling the environmental impact of polycyclic aromatic hydrocarbons (PAHs). These resistant compounds demand innovative remediation strategies. The study explores microbial metabolic capabilities for converting complex PAHs into less harmful byproducts, ensuring sustainable mitigation. Synthesizing literature from 2016 to 2023, it covers PAH characteristics, sources, and associated risks. Degradation mechanisms by bacteria and fungi, key species, and enzymatic processes are examined. Nitrogen-fixing and phosphate-solubilizing bacteria contributions in symbiotic relationships with plants are highlighted. Biosurfactant-producing bacteria enhance PAH solubility, expanding microbial accessibility for degradation. Cutting-edge trends in omics technologies, synthetic biology, genetic engineering, and nano-remediation offer promising avenues. Recommendations emphasize genetic regulation, field-scale studies, sustainability assessments, interdisciplinary collaboration, and knowledge dissemination. These insights pave the way for innovative, sustainable PAH-contaminated environment restoration.
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Affiliation(s)
- Rufus Emamoge Aso
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Benin, Edo State, Nigeria
| | - Ifeyinwa Sarah Obuekwe
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Benin, Edo State, Nigeria.
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Imam A, Suman SK, Vasavdutta S, Chatterjee S, Vempatapu BP, Ray A, Kanaujia PK. Degradation of multiple PAHs and co-contaminants by microbial consortia and their toxicity assessment. Biodegradation 2024; 35:299-313. [PMID: 37792261 DOI: 10.1007/s10532-023-10055-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Accepted: 09/21/2023] [Indexed: 10/05/2023]
Abstract
The anthropogenic activities toward meeting the energy requirements have resulted in an alarming rise in environmental pollution levels. Among pollutants, polycyclic aromatic hydrocarbons (PAHs) are the most predominant due to their persistent and toxic nature. Amidst the several pollutants depuration methods, bioremediation utilizing biodegradation is the most viable alternative. This study investigated the biodegradation efficacy using developed microbial consortium PBR-21 for 2-4 ringed PAHs named naphthalene (NAP), anthracene (ANT), fluorene (FLU), and pyrene (PYR). The removal efficiency was observed up to 100 ± 0.0%, 70.26 ± 4.2%, 64.23 ± 2.3%, and 61.50 ± 2.6%, respectively, for initial concentrations of 400 mg L-1 for NAP, ANT, FLU, and PYR respectively. Degradation followed first-order kinetics with rate constants of 0.39 d-1, 0.10 d-1, 0.08 d-1, and 0.07 d-1 and half-lifet 1 / 2 of 1.8 h, 7.2 h, 8.5 h, and 10 h, respectively. The microbial consortia were found to be efficient towards the co-contaminants with 1 mM concentration. Toxicity examination indicated that microbial-treated PAHs resulted in lesser toxicity in aquatic crustaceans (Artemia salina) than untreated PAHs. Also, the study suggests that indigenous microbial consortia PBR-21 has the potential to be used in the bioremediation of PAH-contaminated environment.
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Affiliation(s)
- Arfin Imam
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, Uttarakhand, 248005, India
- Material Resource Efficiency Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, Uttarakhand, 248005, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Sunil Kumar Suman
- Material Resource Efficiency Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, Uttarakhand, 248005, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
| | - Sonpal Vasavdutta
- CSIR-Central Salt & Marine Chemicals Research Institute, G.B. Marg, Bhavnagar, Gujarat, 364002, India
| | - Shruti Chatterjee
- CSIR-Central Salt & Marine Chemicals Research Institute, G.B. Marg, Bhavnagar, Gujarat, 364002, India
| | - Bhanu Prasad Vempatapu
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, Uttarakhand, 248005, India
| | - Anjan Ray
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, Uttarakhand, 248005, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Pankaj K Kanaujia
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, Uttarakhand, 248005, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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Huizenga JM, Schindler J, Simonich MT, Truong L, Garcia-Jaramillo M, Tanguay RL, Semprini L. PAH bioremediation with Rhodococcus rhodochrous ATCC 21198: Impact of cell immobilization and surfactant use on PAH treatment and post-remediation toxicity. JOURNAL OF HAZARDOUS MATERIALS 2024; 470:134109. [PMID: 38547751 DOI: 10.1016/j.jhazmat.2024.134109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 03/19/2024] [Accepted: 03/20/2024] [Indexed: 04/25/2024]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are prevalent environmental contaminants that are harmful to ecological and human health. Bioremediation is a promising technique for remediating PAHs in the environment, however bioremediation often results in the accumulation of toxic PAH metabolites. The objectives of this research were to demonstrate the cometabolic treatment of a mixture of PAHs by a pure bacterial culture, Rhodococcus rhodochrous ATCC 21198, and investigate PAH metabolites and toxicity. Additionally, the surfactant Tween ® 80 and cell immobilization techniques were used to enhance bioremediation. Total PAH removal ranged from 70-95% for fluorene, 44-89% for phenanthrene, 86-97% for anthracene, and 6.5-78% for pyrene. Maximum removal was achieved with immobilized cells in the presence of Tween ® 80. Investigation of PAH metabolites produced by 21198 revealed a complex mixture of hydroxylated compounds, quinones, and ring-fission products. Toxicity appeared to increase after bioremediation, manifesting as mortality and developmental effects in embryonic zebrafish. 21198's ability to rapidly transform PAHs of a variety of molecular structures and sizes suggests that 21198 can be a valuable microorganism for catalyzing PAH remediation. However, implementing further treatment processes to address toxic PAH metabolites should be pursued to help lower post-remediation toxicity in future studies.
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Affiliation(s)
- Juliana M Huizenga
- Oregon State University, School of Chemical, Biological, and Environmental Engineering, 105 SW 26th St, Corvallis, OR 97331, USA.
| | - Jason Schindler
- Oregon State University, Department of Environmental and Molecular Toxicology, 28645 East Hwy 34, Corvallis, OR 97333, USA.
| | - Michael T Simonich
- Oregon State University, Department of Environmental and Molecular Toxicology, 28645 East Hwy 34, Corvallis, OR 97333, USA.
| | - Lisa Truong
- Oregon State University, Department of Environmental and Molecular Toxicology, 28645 East Hwy 34, Corvallis, OR 97333, USA.
| | - Manuel Garcia-Jaramillo
- Oregon State University, Department of Environmental and Molecular Toxicology, 28645 East Hwy 34, Corvallis, OR 97333, USA.
| | - Robyn L Tanguay
- Oregon State University, Department of Environmental and Molecular Toxicology, 28645 East Hwy 34, Corvallis, OR 97333, USA.
| | - Lewis Semprini
- Oregon State University, School of Chemical, Biological, and Environmental Engineering, 105 SW 26th St, Corvallis, OR 97331, USA.
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Tang L, Sun Y, Lu W, Chen X, Mosa A, Minkina T, Gao Y, Ling W. A novel remediation strategy of mixed calcium peroxide and degrading bacteria for polycyclic aromatic hydrocarbon contaminated water. JOURNAL OF HAZARDOUS MATERIALS 2024; 470:134122. [PMID: 38552397 DOI: 10.1016/j.jhazmat.2024.134122] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 03/11/2024] [Accepted: 03/23/2024] [Indexed: 04/25/2024]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are a class of toxic organic pollutants commonly detected in the aqueous phase. Traditional biodegradation is inefficient and advanced oxidation technologies are expensive. In the current study, a novel strategy was developed using calcium peroxide (CP) and PAH-degrading bacteria (PDB) to effectively augment PAH degradation by 28.62-59.22%. The PDB consisted of the genera Acinetobacter, Stenotrophomonas, and Comamonas. Applying the response surface model (RSM), the most appropriate parameters were identified, and the predictive degradation rates of phenanthrene (Phe), pyrene (Pyr), and ΣPAHs were 98%, 76%, and 84%, respectively. The constructed mixed system could reduce 90% of Phe and more than 60% of ΣPAHs and will perform better at pH 5-7 and lower salinity. Because PAHs tend to bind to dissolved organic matter (DOM) with larger molecular weights, humic acid (HA) had a larger negative effect on the PAH-degradation efficiency of the CP-PDB mixed system than fulvic acid (FA). The proposed PAH-degradation pathways in the mixed system were based on the detection of intermediates at different times. The investigation constructed and optimized a novel environmental PAH-degradation strategy. The synergistic application of PDB and oxidation was extended for organic contaminant degradation in aqueous environments.
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Affiliation(s)
- Lei Tang
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Yulong Sun
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Wenyi Lu
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Xuwen Chen
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Ahmed Mosa
- Soils Department, Faculty of Agriculture, Mansoura University, Mansoura 35516, Egypt
| | - Tatiana Minkina
- Academy of Biology and Biotechnology named after D I Ivanovsky, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Yanzheng Gao
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
| | - Wanting Ling
- Institute of Organic Contaminant Control and Soil Remediation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
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9
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Thakur M, Yadav V, Kumar Y, Pramanik A, Dubey KK. How to deal with xenobiotic compounds through environment friendly approach? Crit Rev Biotechnol 2024:1-20. [PMID: 38710611 DOI: 10.1080/07388551.2024.2336527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 03/13/2024] [Indexed: 05/08/2024]
Abstract
Every year, a huge amount of lethal compounds, such as synthetic dyes, pesticides, pharmaceuticals, hydrocarbons, etc. are mass produced worldwide, which negatively affect soil, air, and water quality. At present, pesticides are used very frequently to meet the requirements of modernized agriculture. The Food and Agriculture Organization of the United Nations (FAO) estimates that food production will increase by 80% by 2050 to keep up with the growing population, consequently pesticides will continue to play a role in agriculture. However, improper handling of these highly persistent chemicals leads to pollution of the environment and accumulation in food chain. These effects necessitate the development of technologies to eliminate or degrade these pollutants. Degradation of these compounds by physical and chemical processes is expensive and usually results in secondary compounds with higher toxicity. The biological strategies proposed for the degradation of these compounds are both cost-effective and eco-friendly. Microbes play an imperative role in the degradation of xenobiotic compounds that have toxic effects on the environment. This review on the fate of xenobiotic compounds in the environment presents cutting-edge insights and novel contributions in different fields. Microbial community dynamics in water bodies, genetic modification for enhanced pesticide degradation and the use of fungi for pharmaceutical removal, white-rot fungi's versatile ligninolytic enzymes and biodegradation potential are highlighted. Here we emphasize the factors influencing bioremediation, such as microbial interactions and carbon catabolism repression, along with a nuanced view of challenges and limitations. Overall, this review provides a comprehensive perspective on the bioremediation strategies.
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Affiliation(s)
- Mony Thakur
- Department of Microbiology, Central University of Haryana, Mahendergarh, India
| | - Vinod Yadav
- Department of Microbiology, Central University of Haryana, Mahendergarh, India
| | - Yatin Kumar
- Department of Microbiology, Central University of Haryana, Mahendergarh, India
| | - Avijit Pramanik
- Department of Microbiology, Central University of Haryana, Mahendergarh, India
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10
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Meng S, Peng T, Liu Y, Zhang S, Qian Z, Huang T, Xie Q, Gu JD, Hu Z. Novel insights into the synergetic degradation of pyrene by microbial communities from mangroves in China. JOURNAL OF HAZARDOUS MATERIALS 2024; 469:133907. [PMID: 38471380 DOI: 10.1016/j.jhazmat.2024.133907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 02/18/2024] [Accepted: 02/25/2024] [Indexed: 03/14/2024]
Abstract
Pyrene is a high molecular weight polycyclic aromatic hydrocarbon (HMW-PAHs). It is a ubiquitous, persistent, and carcinogenic environmental contaminant that has raised concern worldwide. This research explored synergistic bacterial communities for efficient pyrene degradation in seven typical Southern China mangroves. The bacterial communities of seven typical mangroves were enriched by pyrene, and enriched bacterial communities showed an excellent pyrene degradation capacity of > 95% (except for HK mangrove and ZJ mangrove). Devosia, Hyphomicrobium, Flavobacterium, Marinobacter, Algoriphahus, and Youhaiella all have significant positive correlations with pyrene (R>0, p < 0.05) by 16SrRNA gene sequencing and metagenomics analysis, indicated that these genera play a vital role in pyrene metabolism. Meanwhile, the functional genes were involved in pyrene degradation that was enriched in the bacterial communities, including the genes of nagAa, ndoR, pcaG, etc. Furthermore, the analyses of functional genes and binning genomes demonstrated that some bacterial communities as a unique teamwork to cooperatively participate in pyrene degradation. Interestingly, the genes related to biogeochemical cycles were enriched, such as narG , soxA, and cyxJ, suggested that bacterial communities were also helpful in maintaining the stability of the ecological environment. In addition, some novel species with pyrene-degradation potential were identified in the pyrene-degrading bacterial communities, which can enrich the resource pool of pyrene-degrading strains. Overall, this study will help develop further research strategies for pollutant removal.
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Affiliation(s)
- Shanshan Meng
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China
| | - Tao Peng
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China
| | - Yongjin Liu
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China
| | - Shan Zhang
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China
| | - Zhihui Qian
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China
| | - Tongwang Huang
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China
| | - Qingyi Xie
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou 571101, PR China
| | - Ji-Dong Gu
- Environmental Science and Engineering Research Group, Guangdong Technion -Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, China
| | - Zhong Hu
- Department of Biology, Shantou University, Shantou, Guangdong 515063, PR China; Offshore Environmental Pollution Control Engineering Research, Shantou University, Shantou, Guangdong 515063, PR China.
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11
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Achife CE, Ijah UJJ, Oyeleke SB, Bala JD, Oyewole OA, Maddela NR, Prasad R. Assessment and Biodegradation of Polycyclic Aromatic Hydrocarbons in Soil and Water Around Petroleum Products Depot Suleja, Nigeria. Appl Biochem Biotechnol 2024; 196:2819-2838. [PMID: 37676559 DOI: 10.1007/s12010-023-04672-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/16/2023] [Indexed: 09/08/2023]
Abstract
Petroleum contamination constitutes a frequent incidence in various petroleum depots in Nigeria. In this study, the polycyclic aromatic hydrocarbons (PAHs) present in soil and water in communities around Petroleum Products Marketing Company (PPMC) Suleja, Nigeria, were evaluated and degraded using indigenous microorganisms. The samples sites were divided into 7 plots from where samples of water and soil were obtained: one within the PPMC depot, five from communities surrounding the depot, and the control 93,000 km from the depot. The microbial counts were determined using spread plate inoculation technique on minimal salt media. The microbial isolates were characterized and identified based on their cultural, biochemical, and molecular characteristics. The potential of the microbial isolates to utilize 0.05 mL of diesel, kerosene, engine oil, and crude oil was determined in a Bushnell Haas Broth, and the biodegradation was determined by total viable cell counts and spectrophotometry. The ability of the isolates to mineralize PAHs was also evaluated in a minimum salt media. The bacterial isolates were species of Streptococcus, Pseudomonas, Staphylococcus, Proteus, Escherichia, and Bacillus, while species of Penicillium, Aspergillus, Mucor, and Rhizopus were isolated among the fungi. Aspergillus niger strain ATCC 1015 and Bacillus thuringiensis strain M43 showed high capacity to utilize the 16 priority PAHs. The pahE1 gene was used by Bacillus thuringiensis, Pseudomonas aeruginosa and A. niger, while Penicillium notatum used pahE2 gene for the degradation of the PAH. The current study identified microbial isolates that can utilize priority PAHs, making them beneficial for oil spill bioremediation in tropical environments.
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Affiliation(s)
| | | | | | - Jeremiah David Bala
- Department of Microbiology, Federal University of Technology, PMB 65, Minna, Nigeria
- African Center of Excellence for Mycotoxin and Food Safety (ACEMFS), Federal University of Technology, Minna, Nigeria
| | - Oluwafemi Adebayo Oyewole
- Department of Microbiology, Federal University of Technology, PMB 65, Minna, Nigeria.
- African Center of Excellence for Mycotoxin and Food Safety (ACEMFS), Federal University of Technology, Minna, Nigeria.
| | - Naga Raju Maddela
- Departamento de Ciencias Biológicas, Facultad de Ciencias de la Salud, Universidad Técnica de Manabí, Portoviejo, Ecuador.
| | - Ram Prasad
- Department of Botany, Mahatma Gandhi Central University, Motihari, Bihar, 845401, India.
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12
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Li Y, Zhao H, Wang L, Bai Y, Tang T, Liang H, Gao D. New insights in the biodegradation of high-cyclic polycyclic aromatic hydrocarbons with crude enzymes of Trametes versicolor. ENVIRONMENTAL TECHNOLOGY 2024; 45:2243-2254. [PMID: 36647685 DOI: 10.1080/09593330.2023.2169639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 01/08/2023] [Indexed: 06/17/2023]
Abstract
High-cyclic polycyclic aromatic hydrocarbons (PAHs), with complex fused aromatic structures, are widespread, refractory and harmful in soil, but the current remediation technologies for high-cyclic PAHs are often inefficient and costly. This study focused on the biodegradation process of high-cyclic benzo[a]pyrene by Trametes versicolor crude enzymes. The crude enzymes exhibited high laccase activity (22112 U/L) and benzo[a]pyrene degradation efficiency (42.21%) within a short reaction time. Through the actual degradation and degradation kinetics, the degradation efficiency of PAHs decreased with the increase of aromatic rings. And the degradation conditions (temperature, pH, Cu2+ concentration, mediator) were systematically optimised. The optimum degradation conditions (1.5 mM Cu2+, 28℃ and pH 6) showed significant degradation efficiency for the low and medium concentrations of benzo[a]pyrene. In addition, complete degradation of benzo[a]pyrene could be achieved using only 0.2 mM of HBT mediator compared with crude enzymes alone. Collectively, these results showed the high-cyclic PAHs degradation potential of Trametes versicolor crude enzymes, and provided references to evaluate applicable prospects of white rot fungus crude enzymes in PAHs-contaminated soils.
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Affiliation(s)
- Ying Li
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
| | - Huan Zhao
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
| | - Litao Wang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
| | - Yuhong Bai
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
| | - Teng Tang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
| | - Hong Liang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
| | - Dawen Gao
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
- Beijing Energy Conservation & Sustainable Urban and Rural Development Provincial and Ministry Co-construction Collaboration Innovation Center, Beijing University of Civil Engineering and Architecture, Beijing, People's Republic of China
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13
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Rahman MU, Ullah MW, Shah JA, Sethupathy S, Bilal H, Abdikakharovich SA, Khan AU, Khan KA, Elboughdiri N, Zhu D. Harnessing the power of bacterial laccases for xenobiotic degradation in water: A 10-year overview. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 918:170498. [PMID: 38307266 DOI: 10.1016/j.scitotenv.2024.170498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 11/10/2023] [Accepted: 01/25/2024] [Indexed: 02/04/2024]
Abstract
Industrialization and population growth are leading to the production of significant amounts of sewage containing hazardous xenobiotic compounds. These compounds pose a threat to human and animal health, as well as the overall ecosystem. To combat this issue, chemical, physical, and biological techniques have been used to remove these contaminants from water bodies affected by human activity. Biotechnological methods have proven effective in utilizing microorganisms and enzymes, particularly laccases, to address this problem. Laccases possess versatile enzymatic characteristics and have shown promise in degrading different xenobiotic compounds found in municipal, industrial, and medical wastewater. Both free enzymes and crude enzyme extracts have demonstrated success in the biotransformation of these compounds. Despite these advancements, the widespread use of laccases for bioremediation and wastewater treatment faces challenges due to the complex composition, high salt concentration, and extreme pH often present in contaminated media. These factors negatively impact protein stability, recovery, and recycling processes, hindering their large-scale application. These issues can be addressed by focusing on large-scale production, resolving operation problems, and utilizing cutting-edge genetic and protein engineering techniques. Additionally, finding novel sources of laccases, understanding their biochemical properties, enhancing their catalytic activity and thermostability, and improving their production processes are crucial steps towards overcoming these limitations. By doing so, enzyme-based biological degradation processes can be improved, resulting in more efficient removal of xenobiotics from water systems. This review summarizes the latest research on bacterial laccases over the past decade. It covers the advancements in identifying their structures, characterizing their biochemical properties, exploring their modes of action, and discovering their potential applications in the biotransformation and bioremediation of xenobiotic pollutants commonly present in water sources.
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Affiliation(s)
- Mujeeb Ur Rahman
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, PR China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, PR China
| | - Muhammad Wajid Ullah
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Junaid Ali Shah
- College of Life Sciences, Jilin University, Changchun 130012, PR China; Fergana Medical Institute of Public Health Uzbekistan, Fergana 150110, Uzbekistan
| | - Sivasamy Sethupathy
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, PR China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, PR China
| | - Hazart Bilal
- Department of Dermatology, The Second Affiliated Hospital of Shantou University Medical College, Shantou, PR China
| | | | - Afaq Ullah Khan
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Khalid Ali Khan
- Applied College, Mahala Campus and the Unit of Bee Research and Honey Production/Research Center for Advanced Materials Science (RCAMS), King Khalid University, Abha 61413, Saudi Arabia
| | - Noureddine Elboughdiri
- Chemical Engineering Department, College of Engineering, University of Ha'il, Ha'il 81441, Saudi Arabia; Chemical Engineering Process Department, National School of Engineers Gabes, University of Gabes, Gabes 6029, Tunisia
| | - Daochen Zhu
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, PR China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, PR China.
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14
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Li J, Ou Y, Wang L, Zheng Y, Xu W, Peng J, Zhang X, Cao Z, Ye J. Responses of a polycyclic aromatic hydrocarbon-degrading bacterium, Paraburkholderia fungorum JT-M8, to Cd (II) under P-limited oligotrophic conditions. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133123. [PMID: 38056271 DOI: 10.1016/j.jhazmat.2023.133123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 10/28/2023] [Accepted: 11/27/2023] [Indexed: 12/08/2023]
Abstract
For the bioremediation of mixed-contamination sites, studies on polycyclic aromatic hydrocarbon (PAH) degradation or Cd (II) tolerance in bacteria are commonly implemented in nutrient-rich media. In contrast, in the field, inocula usually encounter harsh oligotrophic habitats. In this study, the environmental strain Paraburkholderia fungorum JT-M8 was used to explore the overlooked Cd (II) defense mechanism during PAH dissipation under P-limited oligotrophic condition. The results showed that the growth and PAH degradation ability of JT-M8 under Cd (II) stress were correlated with phosphate contents and exhibited self-regulating properties. Phosphates mainly affected the Cd (II) content in solution, while the cellular distribution of Cd (II) depended on Cd (II) levels; Cd (II) was mainly located in the cytoplasm when exposed to less Cd (II), and vice versa. The unique Cd (II) detoxification pathways could be classified into three aspects: (i) Cd (II) ionic equilibrium and dose-response effects regulated by environmental matrices (phosphate contents); (ii) bacterial physiological self-regulation, e.g., cell surface-binding, protein secretion and active transport systems; and (iii) specific adaptive responses (flagellum aggregation). This study emphasizes the importance of considering culture conditions when assessing the metal tolerance and provides new insight into the bacterial detoxification process of complex PAH-Cd (II) pollutants.
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Affiliation(s)
- Jinghua Li
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China; International Joint Laboratory on Key Techniques in Water Treatment, Xinxiang, Henan 453007, PR China; Henan Key Laboratory for Environmental Pollution Control, Xinxiang, Henan 453007, PR China; Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, Henan 453007, PR China.
| | - Yiwen Ou
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China; School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, PR China
| | - Lijuan Wang
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China
| | - Yue Zheng
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China
| | - Weiyun Xu
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China
| | - Jianbiao Peng
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China; International Joint Laboratory on Key Techniques in Water Treatment, Xinxiang, Henan 453007, PR China; Henan Key Laboratory for Environmental Pollution Control, Xinxiang, Henan 453007, PR China; Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, Henan 453007, PR China
| | - Xin Zhang
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China; International Joint Laboratory on Key Techniques in Water Treatment, Xinxiang, Henan 453007, PR China; Henan Key Laboratory for Environmental Pollution Control, Xinxiang, Henan 453007, PR China; Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, Henan 453007, PR China
| | - Zhiguo Cao
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China; International Joint Laboratory on Key Techniques in Water Treatment, Xinxiang, Henan 453007, PR China; Henan Key Laboratory for Environmental Pollution Control, Xinxiang, Henan 453007, PR China; Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, Henan 453007, PR China
| | - Junpei Ye
- School of Environment, Henan Normal University, Xinxiang, Henan 453007, PR China; International Joint Laboratory on Key Techniques in Water Treatment, Xinxiang, Henan 453007, PR China; Henan Key Laboratory for Environmental Pollution Control, Xinxiang, Henan 453007, PR China; Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, Henan 453007, PR China
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15
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Dai Y, Li J, Wang S, Cai X, Zhao X, Cheng X, Huang Q, Yang X, Luo C, Zhang G. Unveiling the synergistic mechanism of autochthonous fungal bioaugmentation and ammonium nitrogen biostimulation for enhanced phenanthrene degradation in oil-contaminated soils. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133293. [PMID: 38141301 DOI: 10.1016/j.jhazmat.2023.133293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 11/22/2023] [Accepted: 12/14/2023] [Indexed: 12/25/2023]
Abstract
Autochthonous bioaugmentation and nutrient biostimulation are promising bioremediation methods for polycyclic aromatic hydrocarbons (PAHs) in contaminated agricultural soils, but little is known about their combined working mechanism. In this study, a microcosm trial was conducted to explore the combined mechanism of autochthonous fungal bioaugmentation and ammonium nitrogen biostimulation, using DNA stable-isotope-probing (DNA-SIP) and microbial network analysis. Both treatments significantly improved phenanthrene (PHE) removal, with their combined application producing the best results. The microbial community composition was notably altered by all bioremediation treatments, particularly the PHE-degrading bacterial and fungal taxa. Fungal bioaugmentation removed PAHs through extracellular enzyme secretion but reduced soil microbial diversity and ecological stability, while nitrogen biostimulation promoted PAH dissipation by stimulating indigenous soil degrading microbes, including fungi and key bacteria in the soil co-occurrence networks, ensuring the ecological diversity of soil microorganisms. The combination of both approaches proved to be the most effective strategy, maintaining a high degradation efficiency and relatively stable soil biodiversity through the secretion of lignin hydrolytic enzymes by fungi, and stimulating the reproduction of soil native degrading microbes, especially the key degraders in the co-occurrence networks. Our findings provide a fresh perspective of the synergy between fungal bioaugmentation and nitrogen biostimulation, highlighting the potential of this combined bioremediation approach for in situ PAH-contaminated soils.
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Affiliation(s)
- Yeliang Dai
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Jibing Li
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China.
| | - Shuang Wang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Xixi Cai
- Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
| | - Xuan Zhao
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Xianghui Cheng
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Qihui Huang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Xiumin Yang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Chunling Luo
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China.
| | - Gan Zhang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
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16
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Olivera C, Laura Tondo M, Girardi V, Sol Herrero M, Lucía Balaban C, Matías Salvatierra L. High-performance diesel biodegradation using biogas digestate as microbial inoculum in lab-scale solid supported bioreactors. CHEMOSPHERE 2024; 352:141384. [PMID: 38350516 DOI: 10.1016/j.chemosphere.2024.141384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 01/30/2024] [Accepted: 02/02/2024] [Indexed: 02/15/2024]
Abstract
Industrial anaerobic digestion (AD) produces biogas and a digestate that is usually applied as a biofertilizer. However, the study and application of this by-product in terms of its rich microbial diversity and high metabolic activity have been barely investigated. In this work, the digestate regarded as an inoculum-without any further manipulation-was faced to a target hydrocarbon (i.e., diesel oil) to explore its biodegradation capability and potential application in bioaugmentation strategies. Lab-scale single batch bioreactors with solid support (i.e., sand or gravel) embedded with the inoculum and diesel were used to improve bioaccessibility and biofilm formation. In addition, different experimental conditions were assayed varying the initial diesel concentration, microbial load, type of solid support, inoculum aging time, and presence or absence of oxygen. Remaining diesel concentration, dehydrogenase activity and microbial community structure were periodically determined. Remarkably, this low-cost consortium was capable of a significant reduction (>90%) in the concentration of diesel, within 14 days and when the initial load was as high as 6950 mg/kg dry solid support. Furthermore, a 10-fold increment in dehydrogenase activity, alongside an increase in the abundance of hydrocarbon-degrading bacterial groups, and the enrichment of genes for alkane monooxygenase and aromatic ring-hydroxylating dioxygenases, encourage further study of this consortium for bioremediation purposes.
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Affiliation(s)
- Camila Olivera
- Instituto de Investigaciones en Ingeniería Ambiental, Química y Biotecnología Aplicada - INGEBIO-, Facultad de Química e Ingeniería del Rosario, Pontificia Universidad Católica Argentina (UCA), Av. Pellegrini 3314, (S2002QEO), Rosario, (Santa Fe), Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
| | - María Laura Tondo
- Instituto de Investigaciones en Ingeniería Ambiental, Química y Biotecnología Aplicada - INGEBIO-, Facultad de Química e Ingeniería del Rosario, Pontificia Universidad Católica Argentina (UCA), Av. Pellegrini 3314, (S2002QEO), Rosario, (Santa Fe), Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
| | - Valentina Girardi
- Instituto de Investigaciones en Ingeniería Ambiental, Química y Biotecnología Aplicada - INGEBIO-, Facultad de Química e Ingeniería del Rosario, Pontificia Universidad Católica Argentina (UCA), Av. Pellegrini 3314, (S2002QEO), Rosario, (Santa Fe), Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
| | - María Sol Herrero
- Instituto de Investigaciones en Ingeniería Ambiental, Química y Biotecnología Aplicada - INGEBIO-, Facultad de Química e Ingeniería del Rosario, Pontificia Universidad Católica Argentina (UCA), Av. Pellegrini 3314, (S2002QEO), Rosario, (Santa Fe), Argentina
| | - Cecilia Lucía Balaban
- Instituto de Investigaciones en Ingeniería Ambiental, Química y Biotecnología Aplicada - INGEBIO-, Facultad de Química e Ingeniería del Rosario, Pontificia Universidad Católica Argentina (UCA), Av. Pellegrini 3314, (S2002QEO), Rosario, (Santa Fe), Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
| | - Lucas Matías Salvatierra
- Instituto de Investigaciones en Ingeniería Ambiental, Química y Biotecnología Aplicada - INGEBIO-, Facultad de Química e Ingeniería del Rosario, Pontificia Universidad Católica Argentina (UCA), Av. Pellegrini 3314, (S2002QEO), Rosario, (Santa Fe), Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina.
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17
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Zhang X, Yao Z, Yang W, Zhang W, Liu Y, Wang Z, Li W. Distribution, sources, partition behavior and risk assessment of polycyclic aromatic hydrocarbons (PAHs) in the waters and sediments of Lake Ulansuhai, China. MARINE POLLUTION BULLETIN 2024; 200:116072. [PMID: 38290363 DOI: 10.1016/j.marpolbul.2024.116072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 01/10/2024] [Accepted: 01/21/2024] [Indexed: 02/01/2024]
Abstract
This study represents the first comprehensive investigation of 16 polycyclic aromatic hydrocarbons (PAHs) in the waters and sediments of Lake Ulansuhai. It explores their occurrence, sources, transport behavior, and associated risks to human health and ecosystems. The results revealed that concentrations of ∑PAHs in dissolved phase and sediment with no significant seasonal differences. In contrast, ∑PAHs concentrations in suspended particulate matter were significantly higher during the ice-free period compared to the ice period. Spatially, the northern part of Lake Ulansuhai displayed higher PAHs content. Diagnostic isomeric ratios and PMF models indicated that the PAHs were primarily derived from combustion sources. The distribution of PAHs within water-sediment demonstrated that non-equilibrium status. Fugacity calculations indicated that 2-4 rings PAHs acted as secondary sources of sediment emissions. Toxicity assessment, indicated that PAHs posed no significant carcinogenic risk to humans. Risk quotient values showed that PAHs as low to high ecological risk.
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Affiliation(s)
- Xiaoxue Zhang
- School of Energy and Environment, Inner Mongolia University of Science and Technology, Baotou, 014000, China; Autonomous Region Level Ecological Protection and Comprehensive Utilization Cooperative Innovation Center for the Inner Mongolia Section of the Yellow River Basin, Baotou, 014000, China
| | - Zhi Yao
- Autonomous Region Level Ecological Protection and Comprehensive Utilization Cooperative Innovation Center for the Inner Mongolia Section of the Yellow River Basin, Baotou, 014000, China; School of Mining and Coal, Inner Mongolia University of Science and Technology, Baotou, 014000, China
| | - Wenhuan Yang
- School of Energy and Environment, Inner Mongolia University of Science and Technology, Baotou, 014000, China; Autonomous Region Level Ecological Protection and Comprehensive Utilization Cooperative Innovation Center for the Inner Mongolia Section of the Yellow River Basin, Baotou, 014000, China.
| | - Wenxing Zhang
- Inner Mongolia Ecological Environment Research Institute Co., Ltd, Hohhot, 010000, China
| | - Yizhe Liu
- School of Energy and Environment, Inner Mongolia University of Science and Technology, Baotou, 014000, China; Autonomous Region Level Ecological Protection and Comprehensive Utilization Cooperative Innovation Center for the Inner Mongolia Section of the Yellow River Basin, Baotou, 014000, China
| | - Zhichao Wang
- School of Energy and Environment, Inner Mongolia University of Science and Technology, Baotou, 014000, China; Autonomous Region Level Ecological Protection and Comprehensive Utilization Cooperative Innovation Center for the Inner Mongolia Section of the Yellow River Basin, Baotou, 014000, China
| | - Weiping Li
- School of Energy and Environment, Inner Mongolia University of Science and Technology, Baotou, 014000, China; Autonomous Region Level Ecological Protection and Comprehensive Utilization Cooperative Innovation Center for the Inner Mongolia Section of the Yellow River Basin, Baotou, 014000, China.
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18
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Wang Y, Sun S, Liu Q, Su Y, Zhang H, Zhu M, Tang F, Gu Y, Zhao C. Characteristic microbiome and synergistic mechanism by engineering agent MAB-1 to evaluate oil-contaminated soil biodegradation in different layer soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:10802-10817. [PMID: 38212565 DOI: 10.1007/s11356-024-31891-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 01/03/2024] [Indexed: 01/13/2024]
Abstract
Bioremediation is a sustainable and pollution-free technology for crude oil-contaminated soil. However, most studies are limited to the remediation of shallow crude oil-contaminated soil, while ignoring the deeper soil. Here, a high-efficiency composite microbial agent MAB-1 was provided containing Bacillus (naphthalene and pyrene), Acinetobacter (cyclohexane), and Microbacterium (xylene) to be synergism degradation of crude oil components combined with other treatments. According to the crude oil degradation rate, the up-layer (63.64%), middle-layer (50.84%), and underlying-layer (54.21%) crude oil-contaminated soil are suitable for bioaugmentation (BA), biostimulation (BS), and biostimulation+bioventing (BS+BV), respectively. Combined with GC-MS and carbon number distribution analysis, under the optimal biotreatment, the degradation rates of 2-ring and 3-ring PAHs in layers soil were about 70% and 45%, respectively, and the medium and long-chain alkanes were reduced during the remediation. More importantly, the relative abundance of bacteria associated with crude oil degradation increased in each layer after the optimal treatment, such as Microbacterium (2.10-14%), Bacillus (2.56-12.1%), and Acinetobacter (0.95-12.15%) in the up-layer soil; Rhodococcus (1.5-6.9%) in the middle-layer soil; and Pseudomonas (3-5.4%) and Rhodococcus (1.3-13.2%) in the underlying-layer soil. Our evaluation results demonstrated that crude oil removal can be accelerated by adopting appropriate bioremediation approach for different depths of soil, providing a new perspective for the remediation of actual crude oil-contaminated sites.
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Affiliation(s)
- Yaru Wang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Shuo Sun
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Qiyou Liu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China.
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China.
| | - Yuhua Su
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Hang Zhang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Mingjun Zhu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Fang Tang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Yingying Gu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
| | - Chaocheng Zhao
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, People's Republic of China
- State Key Laboratory of Petroleum Pollution Control, No.66 Changjiang West Road, Huangdao District, Qingdao, 266580, People's Republic of China
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Tarigholizadeh S, Sushkova S, Rajput VD, Ranjan A, Arora J, Dudnikova T, Barbashev A, Mandzhieva S, Minkina T, Wong MH. Transfer and Degradation of PAHs in the Soil-Plant System: A Review. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:46-64. [PMID: 38108272 DOI: 10.1021/acs.jafc.3c05589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are highly toxic, persistent organic pollutants that threaten ecosystems and human health. Consistent monitoring is essential to minimize the entry of PAHs into plants and reduce food chain contamination. PAHs infiltrate plants through multiple pathways, causing detrimental effects and triggering diverse plant responses, ultimately increasing either toxicity or tolerance. Primary plant detoxification processes include enzymatic transformation, conjugation, and accumulation of contaminants in cell walls/vacuoles. Plants also play a crucial role in stimulating microbial PAHs degradation by producing root exudates, enhancing bioavailability, supplying nutrients, and promoting soil microbial diversity and activity. Thus, synergistic plant-microbe interactions efficiently decrease PAHs uptake by plants and, thereby, their accumulation along the food chain. This review highlights PAHs uptake pathways and their overall fate as contaminants of emerging concern (CEC). Understanding plant uptake mechanisms, responses to contaminants, and interactions with rhizosphere microbiota is vital for addressing PAH pollution in soil and ensuring food safety and quality.
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Affiliation(s)
| | - Svetlana Sushkova
- Southern Federal University, Rostov-on-Don, 344090, Russian Federation
| | - Vishnu D Rajput
- Southern Federal University, Rostov-on-Don, 344090, Russian Federation
| | - Anuj Ranjan
- Southern Federal University, Rostov-on-Don, 344090, Russian Federation
| | - Jayati Arora
- Amity Institute of Environmental Science, Amity University, Noida 201301, India
| | - Tamara Dudnikova
- Southern Federal University, Rostov-on-Don, 344090, Russian Federation
| | - Andrey Barbashev
- Southern Federal University, Rostov-on-Don, 344090, Russian Federation
| | | | - Tatiana Minkina
- Southern Federal University, Rostov-on-Don, 344090, Russian Federation
| | - Ming Hung Wong
- Consortium on Health, Environment, Education, and Research (CHEER), The Education University of Hong Kong, Hong Kong, China; Southern Federal University, Rostov-on-Don, 344090, Russian Federation
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20
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Lu J, Liu Y, Zhang R, Hu Z, Xue K, Dong B. Biochar inoculated with Pseudomonas putida alleviates its inhibitory effect on biodegradation pathways in phenanthrene-contaminated soil. JOURNAL OF HAZARDOUS MATERIALS 2024; 461:132550. [PMID: 37729712 DOI: 10.1016/j.jhazmat.2023.132550] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 08/23/2023] [Accepted: 09/11/2023] [Indexed: 09/22/2023]
Abstract
Controversial results are reported whereby biodegradation of polycyclic aromatic hydrocarbons (PAHs) can be promoted or inhibited by biochar amendment of soil. Metabolomics was applied to analyze the metabolic profiles of amendment with biochar (BB) and biochar inoculated with functional bacteria (Pseudomonas putida) (BP) involved in phenanthrene (PHE) degradation. Additionally, metagenomic analysis was utilized to assess the impact of different treatments on PHE degradation by soil microorganisms. Results indicated that BB treatment decreased the PHE biodegradation of the soil indigenous bacterial consortium, but BP treatment alleviated this inhibitory effect. Metabolomics revealed the differential metabolite 9-phenanthrol was absent in the BB treatment, but was found in the control group (CK), and in the treatment inoculated with the Pseudomonas putida (Ps) and the BP treatment. Metagenomic analysis showed that biochar decreased the abundance of the cytochrome P450 monooxygenase (CYP116), which was detected in the Pseudomonas putida, thus alleviating the inhibitory effect of biochar on PHE degradation. Moreover, a noticeable delayed increase of functional gene abundance and enzymes abundance in the BB treatment was observed in the PHE degradation pathway. Our findings elucidate the mechanism of inhibition with biochar amendment and the alleviating effect of biochar inoculated with degrading bacteria.
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Affiliation(s)
- Jinfeng Lu
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China; Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Yuexian Liu
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Ruili Zhang
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Zhengyi Hu
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China; Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Kai Xue
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Biya Dong
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
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21
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Brzeszcz J, Steliga T, Ryszka P, Kaszycki P, Kapusta P. Bacteria degrading both n-alkanes and aromatic hydrocarbons are prevalent in soils. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:5668-5683. [PMID: 38127231 PMCID: PMC10799122 DOI: 10.1007/s11356-023-31405-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 12/03/2023] [Indexed: 12/23/2023]
Abstract
This study was undertaken to determine the distribution of soil bacteria capable of utilizing both n-alkanes and aromatic hydrocarbons. These microorganisms have not been comprehensively investigated so far. Ten contaminated (4046-43,861 mg of total petroleum hydrocarbons (TPH) kg-1 of dry weight of soil) and five unpolluted (320-2754 mg TPH kg-1 of dry weight of soil) soil samples from temperate, arid, and Alpine soils were subjected to isolation of degraders with extended preferences and shotgun metagenomic sequencing (selected samples). The applied approach allowed to reveal that (a) these bacteria can be isolated from pristine and polluted soils, and (b) the distribution of alkane monooxygenase (alkB) and aromatic ring hydroxylating dioxygenases (ARHDs) encoding genes is not associated with the contamination presence. Some alkB and ARHD genes shared the same taxonomic affiliation; they were most often linked with the Rhodococcus, Pseudomonas, and Mycolicibacterium genera. Moreover, these taxa together with the Paeniglutamicibacter genus constituted the most numerous groups among 132 culturable strains growing in the presence of both n-alkanes and aromatic hydrocarbons. All those results indicate (a) the prevalence of the hydrocarbon degraders with extended preferences and (b) the potential of uncontaminated soil as a source of hydrocarbon degraders applied for bioremediation purposes.
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Affiliation(s)
- Joanna Brzeszcz
- Department of Microbiology, Oil and Gas Institute - National Research Institute, ul. Lubicz 25A, 31-503, Kraków, Poland.
| | - Teresa Steliga
- Department of Production Technology of Reservoir Fluids, Oil and Gas Institute - National Research Institute, ul. Lubicz 25A, 31-503, Kraków, Poland
| | - Przemysław Ryszka
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University in Kraków, ul. Gronostajowa 7, 30-387, Kraków, Poland
| | - Paweł Kaszycki
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Kraków, Al. Mickiewicza 21, 31-425, Kraków, Poland
| | - Piotr Kapusta
- Department of Microbiology, Oil and Gas Institute - National Research Institute, ul. Lubicz 25A, 31-503, Kraków, Poland
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22
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Thimmarayan S, Mohan H, Manasa G, Natesan K, Mahendran S, Muthukumar Sathya P, Oh BT, Ravi Kumar R, Sigamani Gandhimathi R, Jayaprakash A, Seralathan KK. Biodegradation of naphthalene - Ecofriendly approach for soil pollution mitigation. ENVIRONMENTAL RESEARCH 2024; 240:117550. [PMID: 37931735 DOI: 10.1016/j.envres.2023.117550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 10/26/2023] [Accepted: 10/30/2023] [Indexed: 11/08/2023]
Abstract
Naphthalene (NPT), a widely used household pest repellent and insecticide obtained from crude oil, serves as a toxic pollutant to non-target living matter. The stable and resistant nature of NPT makes it difficult to degrade through the physiochemical processes. The present study investigated the bacterial degradation of NPT isolated from crude oil-contaminated soil. Initially, the potent bacteria, Bacillus sp. GN 3.4, were isolated by enrichment culture method and subsequently assessed for NPT biodegradation. The optimum conditions for NPT biodegradation were pH 7.0 at 37 °C, 80 mg/L (initial NPT), 3% v/v (inoculum dose), and 7 days of treatment which showed 100% biodegradation. Furthermore, GC-MS analysis revealed the presence of degradation metabolites, namely, salicylate and hydroquinone indicating potential metabolic pathways. Considering the water-solubility and non-toxic nature of these metabolites, the results imply that Bacillus sp. GN 3.4. could potentially play a role in bioremediation by aiding in eliminating NPT from the soil.
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Affiliation(s)
- Srivalli Thimmarayan
- PG & Research Department of Biochemistry, Sacred Heart College (Autonomous), Tirupattur, 635601, (Affiliated to Thiruvalluvar University, Serkkadu, Vellore-632115, Tamil Nadu, India)
| | - Harshavardhan Mohan
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, 54596, Jeonbuk, South Korea
| | - Gaddapara Manasa
- Department of Biochemistry, School of Applied Sciences, REVA University, Bengaluru, Karnataka, 560064, India
| | - Karthi Natesan
- Department of Biochemistry, School of Applied Sciences, REVA University, Bengaluru, Karnataka, 560064, India; Crop Protection Division, National Institute of Agricultural Sciences, Rural Development Administration, Jeollabuk-do, 55365, South Korea
| | - Shanmugam Mahendran
- Department of Microbiology, Ayya Nadar Janaki Ammal College, Sivakasi, 626124, Tamil Nadu, India
| | - Pavithra Muthukumar Sathya
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, 54596, Jeonbuk, South Korea
| | - Byung-Taek Oh
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, 54596, Jeonbuk, South Korea
| | - R Ravi Kumar
- Agro Climate Research Centre, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
| | | | - Arul Jayaprakash
- PG & Research Department of Biochemistry, Sacred Heart College (Autonomous), Tirupattur, 635601, (Affiliated to Thiruvalluvar University, Serkkadu, Vellore-632115, Tamil Nadu, India).
| | - Kamala-Kannan Seralathan
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, 54596, Jeonbuk, South Korea.
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23
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Wang M, Zhang W, He T, Rong L, Yang Q. Degradation of polycyclic aromatic hydrocarbons in aquatic environments by a symbiotic system consisting of algae and bacteria: green and sustainable technology. Arch Microbiol 2023; 206:10. [PMID: 38059992 DOI: 10.1007/s00203-023-03734-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 10/27/2023] [Accepted: 11/04/2023] [Indexed: 12/08/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are genotoxic, carcinogenic, and persistent in the environment and are therefore of great concern in the environmental protection field. Due to the inherent recalcitrance, persistence and nonreactivity of PAHs, they are difficult to remediate via traditional water treatment methods. In recent years, microbial remediation has been widely used as an economical and environmentally friendly degradation technology for the treatment of PAH-contaminated water. Various bacterial and microalgal strains are capable of potentially degrading or transforming PAHs through intrinsic metabolic pathways. However, their biodegradation potential is limited by the cytotoxic effects of petroleum hydrocarbons, unfavourable environmental conditions, and biometabolic limitations. To address this limitation, microbial communities, biochemical pathways, enzyme systems, gene organization, and genetic regulation related to PAH degradation have been intensively investigated. The advantages of algal-bacterial cocultivation have been explored, and the limitations of PAHs degradation by monocultures of algae or bacteria have been overcome by algal-bacterial interactions. Therefore, a new model consisting of a "microalgal-bacterial consortium" is becoming a new management strategy for the effective degradation and removal of PAHs. This review first describes PAH pollution control technologies (physical remediation, chemical remediation, bioremediation, etc.) and proposes an algal-bacterial symbiotic system for the degradation of PAHs by analysing the advantages, disadvantages, and PAH degradation performance in this system to fill existing research gaps. Additionally, an algal-bacterial system is systematically developed, and the effects of environmental conditions are explored to optimize the degradation process and improve its technical feasibility. The aim of this paper is to provide readers with an effective green and sustainable remediation technology for removing PAHs from aquatic environments.
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Affiliation(s)
- Mengying Wang
- Beijing Key Laboratory of Water Resources & Environmental Engineering, China University of Geosciences (Beijing), Beijing, 100083, People's Republic of China
| | - Wenqing Zhang
- Beijing Key Laboratory of Water Resources & Environmental Engineering, China University of Geosciences (Beijing), Beijing, 100083, People's Republic of China
| | - Tao He
- College of Environmental Science and Engineering, Dalian Maritime University, Dalian, 116026, China
| | - Lingyun Rong
- Beijing Key Laboratory of Water Resources & Environmental Engineering, China University of Geosciences (Beijing), Beijing, 100083, People's Republic of China
| | - Qi Yang
- Beijing Key Laboratory of Water Resources & Environmental Engineering, China University of Geosciences (Beijing), Beijing, 100083, People's Republic of China.
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24
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Gu Y, Xu H, Feng R, Zhang B, Gao M, Sun J, Shen Z, Qu L, Ho SSH, Cao J. Insight into personal exposure characteristics and health effects of PM 2.5 and PM 0.25-bound PAHs and their derivatives with different heating ways in the Fenwei Plain, China. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 338:122699. [PMID: 37802290 DOI: 10.1016/j.envpol.2023.122699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 10/03/2023] [Accepted: 10/04/2023] [Indexed: 10/08/2023]
Abstract
Personal exposure (PE) to polycyclic aromatic hydrocarbons (PAHs) and their derivatives in particulate matter with two aerodynamic sizes of 2.5 and 0.25 μm (PM2.5 and PM0.25) from rural housewives was studied in the Fenwei Plain, China. A total of 15 households were divided into five different groups based on the type of solid fuel and heating device used, including biomass briquette-furnace (BBF), biomass-elevated Kang (BEK), outdoor lump coal-boiler (OLC), indoor briquette coal-stove (IBC), and electricity (ELE). The PE concentrations of the PAHs and biomarkers in urine collected from the participants were determined. The results showed that the PE concentrations of total quantified PAHs in the biomass group (i.e., BBF and BEK) were 2.2 and 2.0 times higher than those in the coal groups (i.e., OLC and IBC) in PM2.5 and PM0.25, respectively. The housewives who used biomass as fuel suffered from higher potential health impacts than the coal fuel users. The incremental lifetime cancer risk for the PAHs in PM2.5 in the BBF and BEK groups exceeded the international safety threshold. Furthermore, the PE concentrations of oxygenated PAH (o-PAHs) in PM2.5 and PM0.25 in the biomass groups and the nitrated PAHs (n-PAHs) in PM0.25 in the coal groups showed strong correlations with the biomarkers. The results of this study proved the associations between exposure to the different classes of PAHs and health hazards. The findings could also serve as a guideline in establishing efficient measures for using solid fuels for cooking and household warming in northern China.
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Affiliation(s)
- Yunxuan Gu
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Hongmei Xu
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China; SKLLQG, Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, 710061, China.
| | - Rong Feng
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Bin Zhang
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Min Gao
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China; Shaanxi Provincial Academy of Environmental Science, Xi'an, 710061, China
| | - Jian Sun
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Zhenxing Shen
- Department of Environmental Science and Engineering, Xi'an Jiaotong University, Xi'an, 710049, China; SKLLQG, Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, 710061, China
| | - Linli Qu
- Hong Kong Premium Services and Research Laboratory, Kowloon, Hong Kong SAR, China
| | - Steven Sai Hang Ho
- Division of Atmospheric Sciences, Desert Research Institute, Reno, NV89512, United States
| | - Junji Cao
- SKLLQG, Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, 710061, China
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25
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Li YQ, Zhao BH, Zhang YQ, Zhang XY, Chen XT, Yang HS. Effects of polyvinylchloride microplastics on the toxicity of nanoparticles and antibiotics to aerobic granular sludge: Nitrogen removal, microbial community and resistance genes. ENVIRONMENTAL RESEARCH 2023; 238:117151. [PMID: 37716388 DOI: 10.1016/j.envres.2023.117151] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 08/30/2023] [Accepted: 09/13/2023] [Indexed: 09/18/2023]
Abstract
Copper oxide nanoparticles (CuO NPs) and ciprofloxacin (CIP) have ecological risk to humans and ecosystems. Polyvinylchloride microplastics (PVC MPs), as a representative of microplastics, may often coexist with CuO NPs and CIP in wastewater treatment systems due to their widespread application. However, the co-impact of PVC MPs in wastewater systems contained with CuO NPs and CIP on nitrogen removal and ecological risk is not clear. In this work, PVC MPs co-impacts on the toxicity of CuO NPs and CIP to aerobic granular sludge (AGS) systems and potential mechanisms were investigated. 10 mg/L PVC MPs co-addition did not significantly affect the nitrogen removal, but it definitely changed the microbial community structure and enhanced the propagation and horizontal transfer of antibiotics resistance genes (ARGs). 100 mg/L PVC MPs co-addition resulted in a raise of CuO NP toxicity to the AGS system, but reduced the co-toxicity of CuO NPs and CIP and ARGs expression. The co-impacts with different PVC MPs concentration influenced Cu2+ concentrations, cell membrane integrity, extracellular polymeric substances (EPS) contents and microbial communities in AGS systems, and lead to a change of nitrogen removal.
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Affiliation(s)
- Yu-Qi Li
- Department of Municipal Engineering, Beijing University of Technology, Beijing, 100124, PR China; Department of Environmental Science and Engineering, Fudan University, Shanghai, 200238, PR China
| | - Bai-Hang Zhao
- Department of Municipal Engineering, Beijing University of Technology, Beijing, 100124, PR China.
| | - Yu-Qing Zhang
- Department of Municipal Engineering, Beijing University of Technology, Beijing, 100124, PR China
| | - Xin-Yue Zhang
- Beijing Municipal Institute of City Management, Beijing, 100028, PR China
| | - Xiao-Tang Chen
- Department of Municipal Engineering, Beijing University of Technology, Beijing, 100124, PR China
| | - Hai-Shan Yang
- Department of Municipal Engineering, Beijing University of Technology, Beijing, 100124, PR China
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26
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Poddar K, Sarkar D, Behera S, Sarkar A. Mitigation of hydrocarbon toxicity using bacterial consortium in microcosm environment for agrarian fecundity. ENVIRONMENTAL RESEARCH 2023; 237:117077. [PMID: 37678505 DOI: 10.1016/j.envres.2023.117077] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 08/31/2023] [Accepted: 09/04/2023] [Indexed: 09/09/2023]
Abstract
Petroleum contamination in the soil has been well emphasized as a toxic and hazardous soil pollution contributing to a significant portion of soil infertility worldwide. In the present study, bacterial consortium CHM1 composed of 5 strains belonging to genera Klebsiella, Pantoea, and Enterobacter was evaluated for hydrocarbon degradation ability in the soil environment, as well as their performance in remediating ecotoxicity and phytotoxicity. Initially, the degradation efficiency (1.98%/day) in the soil environment was evaluated. Scanning Electron Microscopy combined with Energy Dispersive X-ray spectroscopy revealed an increase in nitrogen content by 24.98% and a decrease in carbon content by 22.76% implying an improvement in soil fertility. The Fourier Transform InfraRed spectroscopy and Gas Chromatographic analysis revealed significant depletion of aromatic, cyclic, long aliphatic, and complex acid and ester content of the test soil. Moreover, the quantitative PCR analysis exhibited the non-competitive coexistence of each component of the CHM1 consortium. Different enzymatic assays revealed elevated dehydrogenase and superoxide dismutase activity in the degradation system due to the introduction of CHM1 in the soil microcosm. Vibrio fischeri-assisted ecotoxicity analysis had established the potential of CHM1 to efficiently minimize the ecotoxicity of hydrocarbon contamination. The phytotoxicity analysis was performed using four different plant models viz. Chickpeas (Cicer arientinum), Coriander (Coriandrum sativum), Fenugreek (Trigonella foenum-graecum), and Spinach (Spinacia oleracea) exhibiting CHM1 amendment helped to restore plant germination and growth in hydrocarbon-contaminated soil system efficiently. The promising results from this study indicated the possible application of the bacterial consortium in hydrocarbon-contaminated land management and soil restoration for cultivation or other plantation purposes.
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Affiliation(s)
- Kasturi Poddar
- Department of Biotechnology and Medical Engineering, National Institute of Technology Rourkela, Odisha, 769008, India.
| | - Debapriya Sarkar
- Department of Biotechnology and Medical Engineering, National Institute of Technology Rourkela, Odisha, 769008, India.
| | - Surendra Behera
- Department of Botany, Fakir Mohan University, Balasore, Odisha, 756020, India.
| | - Angana Sarkar
- Department of Biotechnology and Medical Engineering, National Institute of Technology Rourkela, Odisha, 769008, India.
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27
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Ma Y, Wang J, Liu Y, Wang X, Zhang B, Zhang W, Chen T, Liu G, Xue L, Cui X. Nocardioides: "Specialists" for Hard-to-Degrade Pollutants in the Environment. Molecules 2023; 28:7433. [PMID: 37959852 PMCID: PMC10649934 DOI: 10.3390/molecules28217433] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 10/24/2023] [Accepted: 11/01/2023] [Indexed: 11/15/2023] Open
Abstract
Nocardioides, a genus belonging to Actinomycetes, can endure various low-nutrient conditions. It can degrade pollutants using multiple organic materials such as carbon and nitrogen sources. The characteristics and applications of Nocardioides are described in detail in this review, with emphasis on the degradation of several hard-to-degrade pollutants by using Nocardioides, including aromatic compounds, hydrocarbons, haloalkanes, nitrogen heterocycles, and polymeric polyesters. Nocardioides has unique advantages when it comes to hard-to-degrade pollutants. Compared to other strains, Nocardioides has a significantly higher degradation rate and requires less time to break down substances. This review can be a theoretical basis for developing Nocardioides as a microbial agent with significant commercial and application potential.
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Affiliation(s)
- Yecheng Ma
- College of Biotechnology and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China
| | - Jinxiu Wang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Yang Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Xinyue Wang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Binglin Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Wei Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Tuo Chen
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Guangxiu Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Lingui Xue
- College of Biotechnology and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China
| | - Xiaowen Cui
- College of Geography and Environment Science, Northwest Normal University, Lanzhou 730070, China
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Arikan B, Yildiztugay E, Ozfidan-Konakci C. Responses of salicylic acid encapsulation on growth, photosynthetic attributes and ROS scavenging system in Lactuca sativa exposed to polycyclic aromatic hydrocarbon pollution. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 203:108026. [PMID: 37708710 DOI: 10.1016/j.plaphy.2023.108026] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 08/17/2023] [Accepted: 09/07/2023] [Indexed: 09/16/2023]
Abstract
Salicylic acid (SA) is a phytohormone that plays a key role in the regulation of the defense response against environmental variables in plants, and it provides increased yield and stress tolerance when exogenously applied to plants as a growth regulator. The role of SA-mediated signals in abiotic stress tolerance varies according to the species, stressor, application method, and dose. This study investigated the effects of salicylic acid (SA, 0.1 mg ml-1) or β-cyclodextrin encapsulated salicylic acid (e-SA, 0.1 mg ml-1) treatments on growth parameters, gas exchange, photosynthesis efficiency, and antioxidant capacity in lettuce seedlings exposed to polycyclic aromatic hydrocarbon pollution. Fluorene (FLN, 100 mg L-1) contamination resulted in a 27% growth rate and a 14% water content reduction in lettuce leaves. Significant suppressions of stomatal conductance, carbon assimilation, and PSII photochemistry were detected in plants under stress. FLN + SA and FLN + e-SA treatments regulated plant-water relations by stimulating proline accumulation and relieving stomatal limitations. As indicated by the high Fv/Fm ratio, photosynthesis efficiency was recovered in FLN + SA and FLN + e-SA group plants. FLN stress caused high oxidative stress in lettuce leaves and increased lipid peroxidation level by 40%. However, especially e-SA application to plants under stress, increased SOD activity by 3-fold and CAT activity by 80% and was successful in preventing H2O2 accumulation and lipid peroxidation. Both SA and e-SA treatments partially activated the AsA-GSH cycle. As a result, direct SA application was effective in mitigating stress-induced physiological limitations with high SA accumulation in the tissues, while encapsulated SA treatment was more effective in regulating photosynthetic and biochemical reactions, alleviating oxidative damage by activating the antioxidant defense, and promoting growth under stress with moderate SA accumulation.
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Affiliation(s)
- Busra Arikan
- Department of Biotechnology, Faculty of Science, Selcuk University, Selcuklu, 42130, Konya, Turkey.
| | - Evren Yildiztugay
- Department of Biotechnology, Faculty of Science, Selcuk University, Selcuklu, 42130, Konya, Turkey.
| | - Ceyda Ozfidan-Konakci
- Department of Molecular Biology and Genetics, Faculty of Science, Necmettin Erbakan University, Meram, 42090, Konya, Turkey.
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Barathi S, J G, Rathinasamy G, Sabapathi N, Aruljothi KN, Lee J, Kandasamy S. Recent trends in polycyclic aromatic hydrocarbons pollution distribution and counteracting bio-remediation strategies. CHEMOSPHERE 2023; 337:139396. [PMID: 37406936 DOI: 10.1016/j.chemosphere.2023.139396] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 06/21/2023] [Accepted: 06/30/2023] [Indexed: 07/07/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are distributed worldwide due to long-term anthropogenic pollution sources. PAHs are recalcitrant and highly persistent in the environment due to their inherent properties, such as heterocyclic aromatic ring structures, thermostability, and hydrophobicity. They are highly toxic, carcinogenic, immunotoxic, teratogenic, and mutagenic to various life systems. This review focuses on the unique data of PAH sources, exposure routes, detection techniques, and harmful effects on the environment and human health. This review provides a comprehensive and systematic compilation of eco-friendly biological treatment solutions for PAH remediation, such as microbial remediation approaches utilizing microbial cultures. In situ and Ex situ bioremediation of PAH methods, including composting land farming, biopiles, bioreactors bioaugmentation, and phytoremediation processes, are discussed in detail, as is a summary of the factors affecting and limiting PAH bioremediation. This review provides an overview of emerging technologies that use multi-process combinatorial treatment approaches and answers to generating value-added by-products during PAH remediation.
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Affiliation(s)
- Selvaraj Barathi
- School of Chemical Engineering, Yeungnam University, Gyeongsan, 38541, Republic of Korea.
| | - Gitanjali J
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore, 63014, Tamil Nadu, India
| | - Gandhimathi Rathinasamy
- Department of Pharmaceutical Chemistry and Analysis, School of Pharmaceutical Sciences, Vels Institute of Science, Technology & Advanced Studies (VISTAS), Pallavaram, Chennai, 600117, Tamilnadu, India
| | - Nadana Sabapathi
- Centre of Translational Research, Shenzhen Bay Laboratory, Guangming District, Shenzhen, 518107, China
| | - K N Aruljothi
- Department of Genetic Engineering, SRM Institute of Science and Technology, Kattankulathur, Chennai, 603 203, India
| | - Jintae Lee
- School of Chemical Engineering, Yeungnam University, Gyeongsan, 38541, Republic of Korea
| | - Sabariswaran Kandasamy
- Department of Biotechnology, PSGR Krishnammal College for Women, Peelamedu, Coimbatore, 641004, India.
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30
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Duan L, Zhong J, Ying Y, Jiang C, Chen W. Preferential association of polycyclic aromatic hydrocarbons (PAHs) with soil colloids at an e-waste recycling site: Implications for risk of PAH migration to subsurface environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 889:164222. [PMID: 37211118 DOI: 10.1016/j.scitotenv.2023.164222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 05/13/2023] [Accepted: 05/13/2023] [Indexed: 05/23/2023]
Abstract
Polycyclic aromatic hydrocarbon (PAH) contamination at e-waste recycling sites poses high ecological and human-health risks. Of note, PAHs in surface soils can be mobilized through colloid-facilitated transport, and may migrate into the subsurface and pollute groundwater. Here, we show that the colloids released from the soil samples at an e-waste recycling site in Tianjin, China contain high concentrations of PAHs, with total concentrations of 16 PAHs as high as 1520 ng/g dw. Preferential association of the PAHs with the colloids is observed, with the distribution coefficients of PAHs between colloids and bulk soil often above 10. Source diagnostic ratios show that soot-like particles are the main source of PAHs at the site, due to the incomplete combustion of fossil fuels, biomass, and electronic wastes during the e-waste dismantling practices. Due to their small sizes, a large fraction of these soot-like particles can be remobilized as colloids, and this explains the preferential association of PAHs with colloids. Moreover, the colloids-soil distribution coefficients are higher for the low-molecular-weight PAHs than for the high-molecular-weight ones, possibly attributable to the different binding routes/modes of these two groups of PAHs to the particles during combustion. Notably, the preferential association of PAHs with colloids is even more pronounced for the subsurface soils, corroborating that the presence of PAHs in the deeper soils is primarily the results of downward migration of PAH-bearing colloids. The findings highlight the important role of colloids as a vector for the subsurface transport of PAHs at e-waste recycling sites, and call for further understanding of colloid-facilitated transport of PAHs at e-waste recycling sites.
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Affiliation(s)
- Lin Duan
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, 38 Tongyan Road, Tianjin 300350, China
| | - Jingyi Zhong
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, 38 Tongyan Road, Tianjin 300350, China
| | - Yuqin Ying
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, 38 Tongyan Road, Tianjin 300350, China
| | - Chuanjia Jiang
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, 38 Tongyan Road, Tianjin 300350, China
| | - Wei Chen
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, Nankai University, 38 Tongyan Road, Tianjin 300350, China.
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31
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Thacharodi A, Hassan S, Singh T, Mandal R, Chinnadurai J, Khan HA, Hussain MA, Brindhadevi K, Pugazhendhi A. Bioremediation of polycyclic aromatic hydrocarbons: An updated microbiological review. CHEMOSPHERE 2023; 328:138498. [PMID: 36996919 DOI: 10.1016/j.chemosphere.2023.138498] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Revised: 03/08/2023] [Accepted: 03/21/2023] [Indexed: 06/19/2023]
Abstract
A class of organic priority pollutants known as PAHs is of critical public health and environmental concern due to its carcinogenic properties as well as its genotoxic, mutagenic, and cytotoxic properties. Research to eliminate PAHs from the environment has increased significantly due to awareness about their negative effects on the environment and human health. Various environmental factors, including nutrients, microorganisms present and their abundance, and the nature and chemical properties of the PAH affect the biodegradation of PAHs. A large spectrum of bacteria, fungi, and algae have ability to degrade PAHs with the biodegradation capacity of bacteria and fungi receiving the most attention. A considerable amount of research has been conducted in the last few decades on analyzing microbial communities for their genomic organization, enzymatic and biochemical properties capable of degrading PAH. While it is true that PAH degrading microorganisms offer potential for recovering damaged ecosystems in a cost-efficient way, new advances are needed to make these microbes more robust and successful at eliminating toxic chemicals. By optimizing some factors like adsorption, bioavailability and mass transfer of PAHs, microorganisms in their natural habitat could be greatly improved to biodegrade PAHs. This review aims to comprehensively discuss the latest findings and address the current wealth of knowledge in the microbial bioremediation of PAHs. Additionally, recent breakthroughs in PAH degradation are discussed in order to facilitate a broader understanding of the bioremediation of PAHs in the environment.
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Affiliation(s)
- Aswin Thacharodi
- Department of Biochemistry, University of Otago, Dunedin, 9054, New Zealand
| | - Saqib Hassan
- Division of Non-Communicable Diseases, Indian Council of Medical Research (ICMR), New Delhi, 110029, India; Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, 605014, India
| | - Tripti Singh
- Department of Biotechnology, Jaypee Institute of Information Technology, Noida, Uttar Pradesh, 201309, India
| | - Ramkrishna Mandal
- Department of Chemistry, University of Otago, Dunedin, 9054, New Zealand
| | - Jeganathan Chinnadurai
- Department of Research and Development, Dr. Thacharodi's Laboratories, No. 24, 5th Cross, Thanthaiperiyar Nagar, Ellapillaichavadi, Puducherry, 605005, India
| | - Hilal Ahmad Khan
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
| | - Mir Ashiq Hussain
- Department of Chemistry, Pondicherry University, Puducherry, 605014, India
| | - Kathirvel Brindhadevi
- Center for Transdisciplinary Research (CFTR), Department of Pharmacology, Saveetha Dental College, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India
| | - Arivalagan Pugazhendhi
- School of Engineering, Lebanese American University, Byblos, Lebanon; University Centre for Research & Development, Department of Civil Engineering, Chandigarh University, Mohali,140103, India.
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32
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Kumari S, Das S. Bacterial enzymatic degradation of recalcitrant organic pollutants: catabolic pathways and genetic regulations. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:79676-79705. [PMID: 37330441 DOI: 10.1007/s11356-023-28130-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Accepted: 06/01/2023] [Indexed: 06/19/2023]
Abstract
Contamination of soil and natural water bodies driven by increased organic pollutants remains a universal concern. Naturally, organic pollutants contain carcinogenic and toxic properties threatening all known life forms. The conventional physical and chemical methods employed to remove these organic pollutants ironically produce toxic and non-ecofriendly end-products. Whereas microbial-based degradation of organic pollutants provides an edge, they are usually cost-effective and take an eco-friendly approach towards remediation. Bacterial species, including Pseudomonas, Comamonas, Burkholderia, and Xanthomonas, have the unique genetic makeup to metabolically degrade toxic pollutants, conferring their survival in toxic environments. Several catabolic genes, such as alkB, xylE, catA, and nahAc, that encode enzymes and allow bacteria to degrade organic pollutants have been identified, characterized, and even engineered for better efficacy. Aerobic and anaerobic processes are followed by bacteria to metabolize aliphatic saturated and unsaturated hydrocarbons such as alkanes, cycloalkanes, aldehydes, and ethers. Bacteria use a variety of degrading pathways, including catechol, protocatechuate, gentisate, benzoate, and biphenyl, to remove aromatic organic contaminants such as polychlorinated biphenyls, polycyclic aromatic hydrocarbons, and pesticides from the environment. A better understanding of the principle, mechanisms, and genetics would be beneficial for improving the metabolic efficacy of bacteria to such ends. With a focus on comprehending the mechanisms involved in various catabolic pathways and the genetics of the biotransformation of these xenobiotic compounds, the present review offers insight into the various sources and types of known organic pollutants and their toxic effects on health and the environment.
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Affiliation(s)
- Swetambari Kumari
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India
| | - Surajit Das
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769008, Odisha, India.
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33
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Mishra P, Kiran NS, Romanholo Ferreira LF, Yadav KK, Mulla SI. New insights into the bioremediation of petroleum contaminants: A systematic review. CHEMOSPHERE 2023; 326:138391. [PMID: 36933841 DOI: 10.1016/j.chemosphere.2023.138391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 01/16/2023] [Accepted: 03/11/2023] [Indexed: 06/18/2023]
Abstract
Petroleum product is an essential resource for energy, that has been exploited by wide range of industries and regular life. A carbonaceous contamination of marine and terrestrial environments caused by errant runoffs of consequential petroleum-derived contaminants. Additionally, petroleum hydrocarbons can have adverse effects on human health and global ecosystems and also have negative demographic consequences in petroleum industries. Key contaminants of petroleum products, primarily includes aliphatic hydrocarbons, benzene, toluene, ethylbenzene, and xylene (BTEX), polycyclic aromatic hydrocarbons (PAHs), resins, and asphaltenes. On environmental interaction, these pollutants result in ecotoxicity as well as human toxicity. Oxidative stress, mitochondrial damage, DNA mutations, and protein dysfunction are a few key causative mechanisms behind the toxic impacts. Henceforth, it becomes very evident to have certain remedial strategies which could help on eliminating these xenobiotics from the environment. This brings the efficacious application of bioremediation to remove or degrade pollutants from the ecosystems. In the recent scenario, extensive research and experimentation have been implemented towards bio-benign remediation of these petroleum-based pollutants, aiming to reduce the load of these toxic molecules in the environment. This review gives a detailed overview of petroleum pollutants, and their toxicity. Methods used for degrading them in the environment using microbes, periphytes, phyto-microbial interactions, genetically modified organisms, and nano-microbial remediation. All of these methods could have a significant impact on environmental management.
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Affiliation(s)
- Prabhakar Mishra
- Department of Biotechnology, School of Applied Sciences, REVA University, Bengaluru, 560064, Karnataka, India.
| | - Neelakanta Sarvashiva Kiran
- Department of Biotechnology, School of Applied Sciences, REVA University, Bengaluru, 560064, Karnataka, India
| | - Luiz Fernando Romanholo Ferreira
- Graduate Program in Process Engineering, Tiradentes University, Av. Murilo Dantas, 300, Farolândia, Aracaju, Sergipe, 49032-490, Brazil
| | - Krishna Kumar Yadav
- Faculty of Science and Technology, Madhyanchal Professional University, Ratibad, Bhopal, 462044, India
| | - Sikandar I Mulla
- Department of Biochemistry, School of Allied Health Sciences, REVA University, Bengaluru, 560064, Karnataka, India.
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Nathani NM, Mootapally C, Sharma P, Solomon S, Kumar R, Fulke AB, Kumar M. Microbial machinery dealing diverse aromatic compounds: Decoded from pelagic sediment ecogenomics in the gulfs of Kathiawar Peninsula and Arabian Sea. ENVIRONMENTAL RESEARCH 2023; 225:115603. [PMID: 36863652 DOI: 10.1016/j.envres.2023.115603] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 02/16/2023] [Accepted: 02/28/2023] [Indexed: 05/25/2023]
Abstract
Aromatic hydrocarbons are persistent pollutants in aquatic systems as endocrine disruptors, significantly impacting natural ecosystems and human health. Microbes perform as natural bioremediators to remove and regulate aromatic hydrocarbons in the marine ecosystem. The present study focuses upon the comparative diversity and abundance of various hydrocarbon-degrading enzymes and their pathways from deep sediments along the Gulf of Kathiawar Peninsula and Arabian Sea, India. The elucidation of large number of degradation pathways in the study area under the presence of a wide range of pollutants whose fate needs to be addressed. Sediment core samples were collected, and the whole microbiome was sequenced. Analysis of the predicted ORFs (open reading frames) against the AromaDeg database revealed 2946 aromatic hydrocarbon-degrading enzyme sequences. Statistical analysis portrayed that the Gulfs were more diverse in degradation pathways compared to the open sea, with the Gulf of Kutch being more prosperous and more diverse than the Gulf of Cambay. The vast majority of the annotated ORFs belonged to groups of dioxygenases that included catechol, gentisate, and benzene dioxygenases, along with Rieske (2Fe-2S) and vicinal oxygen chelate (VOC) family proteins. From the sampling sites, only 960 of the total predicted genes were given taxonomic annotations, which mention the presence of many under-explored marine microorganism-derived hydrocarbon degrading genes and pathways. Through the present study, we tried to unveil the array of catabolic pathways of aromatic hydrocarbon degradation and genes from a marine ecosystem that upholds economic and ecological significance in India. Thus, this study provides vast opportunities and strategies for microbial resource recovery in marine ecosystems, which can be investigated to explore aromatic hydrocarbon degradation and their potential mechanisms under various oxic or anoxic environments. Future studies should focus on aromatic hydrocarbon degradation by considering degradation pathways, biochemical analysis, enzymatic, metabolic, and genetic systems, and regulations.
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Affiliation(s)
- Neelam M Nathani
- School of Applied Sciences & Technology (SAST-GTU), Gujarat Technological University, Ahmedabad, 382424, Gujarat, India; Department of Life Sciences, Maharaja Krishnakumarsinhji Bhavnagar University, Bhavnagar, 364001, Gujarat, India
| | - Chandrashekar Mootapally
- School of Applied Sciences & Technology (SAST-GTU), Gujarat Technological University, Ahmedabad, 382424, Gujarat, India; Department of Marine Science, Maharaja Krishnakumarsinhji Bhavnagar University, Bhavnagar, 364001, Gujarat, India
| | - Parth Sharma
- School of Applied Sciences & Technology (SAST-GTU), Gujarat Technological University, Ahmedabad, 382424, Gujarat, India
| | - Solly Solomon
- Department of Marine Biology, Microbiology and Biochemistry, School of Marine Sciences, Cochin University of Science & Technology, Kochi, 682022, Kerala, India; Cochin Base of Fishery Survey of India, Post Box 853 Kochangady, Cochin, 682005, Kerala, India
| | - Rakesh Kumar
- School of Ecology and Environment Studies, Nalanda University, Rajgir, 803116, Bihar, India
| | - Abhay B Fulke
- Microbiology Division, CSIR - National Institute of Oceanography (CSIR-NIO), Regional Centre, Andheri (West), Maharashtra, 400053, India
| | - Manish Kumar
- Sustainability Cluster, University of Petroleum & Energy Studies, Dehradun, Uttarakhand, 248007, India; Escuela de Ingeniería y Ciencias, Tecnologico de Monterrey, Campus Monterey, Monterrey, 64849, Nuevo Leon, Mexico.
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35
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Hassan S, Ganai BA. Deciphering the recent trends in pesticide bioremediation using genome editing and multi-omics approaches: a review. World J Microbiol Biotechnol 2023; 39:151. [PMID: 37029313 DOI: 10.1007/s11274-023-03603-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 04/03/2023] [Indexed: 04/09/2023]
Abstract
Pesticide pollution in recent times has emerged as a grave environmental problem contaminating both aquatic and terrestrial ecosystems owing to their widespread use. Bioremediation using gene editing and system biology could be developed as an eco-friendly and proficient tool to remediate pesticide-contaminated sites due to its advantages and greater public acceptance over the physical and chemical methods. However, it is indispensable to understand the different aspects associated with microbial metabolism and their physiology for efficient pesticide remediation. Therefore, this review paper analyses the different gene editing tools and multi-omics methods in microbes to produce relevant evidence regarding genes, proteins and metabolites associated with pesticide remediation and the approaches to contend against pesticide-induced stress. We systematically discussed and analyzed the recent reports (2015-2022) on multi-omics methods for pesticide degradation to elucidate the mechanisms and the recent advances associated with the behaviour of microbes under diverse environmental conditions. This study envisages that CRISPR-Cas, ZFN and TALEN as gene editing tools utilizing Pseudomonas, Escherichia coli and Achromobacter sp. can be employed for remediation of chlorpyrifos, parathion-methyl, carbaryl, triphenyltin and triazophos by creating gRNA for expressing specific genes for the bioremediation. Similarly, systems biology accompanying multi-omics tactics revealed that microbial strains from Paenibacillus, Pseudomonas putida, Burkholderia cenocepacia, Rhodococcus sp. and Pencillium oxalicum are capable of degrading deltamethrin, p-nitrophenol, chlorimuron-ethyl and nicosulfuron. This review lends notable insights into the research gaps and provides potential solutions for pesticide remediation by using different microbe-assisted technologies. The inferences drawn from the current study will help researchers, ecologists, and decision-makers gain comprehensive knowledge of value and application of systems biology and gene editing in bioremediation assessments.
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Affiliation(s)
- Shahnawaz Hassan
- Department of Environmental Science, University of Kashmir, Srinagar, 190006, India.
| | - Bashir Ahmad Ganai
- Centre of Research for Development, University of Kashmir, Srinagar, 190006, India.
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36
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Bonatti E, Dos Santos A, Birolli WG, Rodrigues-Filho E. Endophytic, extremophilic and entomophilic fungi strains biodegrade anthracene showing potential for bioremediation. World J Microbiol Biotechnol 2023; 39:152. [PMID: 37029326 DOI: 10.1007/s11274-023-03590-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 03/21/2023] [Indexed: 04/09/2023]
Abstract
Anthropogenic activities have been increasing Polycyclic Aromatic Hydrocarbons (PAHs) release, promoting an urgent need for decontamination methods. Therefore, anthracene biodegradation by endophytic, extremophilic, and entomophilic fungi was studied. Moreover, a salting-out extraction methodology with the renewable solvent ethanol and the innocuous salt K2HPO4 was employed. Nine of the ten employed strains biodegraded anthracene in liquid medium (19-56% biodegradation) after 14 days at 30 °C, 130 rpm, and 100 mg L-1. The most efficient strain Didymellaceae sp. LaBioMMi 155, an entomophilic strain, was employed for optimized biodegradation, aiming at a better understanding of how factors like pollutant initial concentration, pH, and temperature affected this process. Biodegradation reached 90 ± 11% at 22 °C, pH 9.0, and 50 mg L-1. Futhermore, 8 different PAHs were biodegraded and metabolites were identified. Then, experiments with anthracene in soil ex situ were performed and bioaugmentation with Didymellaceae sp. LaBioMMi 155 presented better results than natural attenuation by the native microbiome and biostimulation by the addition of liquid nutrient medium into soil. Therefore, an expanded knowledge about PAHs biodegradation processes was achieved with emphasis to the action of Didymellaceae sp. LaBioMMi 155, which can be further employed for in situ biodegradation (after strain security test), or for enzyme identification and isolation aiming at oxygenases with optimal activity under alkaline conditions.
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Affiliation(s)
- Erika Bonatti
- Laboratory of Micromolecular Biochemistry of Microorganisms (LaBioMMi), Center for Exact Sciences and Technology, Federal University of São Carlos, Via Washington Luiz, Km 235, P.O. Box 676, São Carlos, SP, 13.565-905, Brazil
| | - Alef Dos Santos
- Laboratory of Micromolecular Biochemistry of Microorganisms (LaBioMMi), Center for Exact Sciences and Technology, Federal University of São Carlos, Via Washington Luiz, Km 235, P.O. Box 676, São Carlos, SP, 13.565-905, Brazil
| | - Willian Garcia Birolli
- Laboratory of Micromolecular Biochemistry of Microorganisms (LaBioMMi), Center for Exact Sciences and Technology, Federal University of São Carlos, Via Washington Luiz, Km 235, P.O. Box 676, São Carlos, SP, 13.565-905, Brazil.
| | - Edson Rodrigues-Filho
- Laboratory of Micromolecular Biochemistry of Microorganisms (LaBioMMi), Center for Exact Sciences and Technology, Federal University of São Carlos, Via Washington Luiz, Km 235, P.O. Box 676, São Carlos, SP, 13.565-905, Brazil.
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Chuang KJ, Dong MR, Laishram P, Hong GB. Colorimetric Detection of Acenaphthene and Naphthalene Using Functionalized Gold Nanoparticles. Int J Mol Sci 2023; 24:ijms24076635. [PMID: 37047607 PMCID: PMC10095492 DOI: 10.3390/ijms24076635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 03/26/2023] [Accepted: 03/31/2023] [Indexed: 04/05/2023] Open
Abstract
Polycyclic aromatic hydrocarbons are a class of chemicals that occur naturally. They generally demonstrate a high degree of critical toxicity towards humans. Acenaphthene and naphthalene contain compounds that are commonly found in the environment as compared to other PAHs. Consequently, a reliable method of detecting PAHs is crucial for the monitoring of water quality. A colorimetric method based on sodium nitrite-functionalized gold nanoparticles was developed in this study for acenaphthene and naphthalene detection. Different functionalized parameters are determined for the optimization of assay conditions. A linear relationship was found in the analyte concentration range of 0.1–10 ppm with the limit of detection for acenaphthene and naphthalene being 0.046 ppm and 0.0015 ppm, respectively, under the optimized assay conditions. The method’s recovery rate for actual samples falls within the range of 98.4–103.0%. In selective and anti-interference tests, the presence of cations and anions has minimal impact on the detection of the analyte. The colorimetric detection method proposed in this study effectively determines the presence of the analyte in real water samples and has a high recovery rate.
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Affiliation(s)
- Kai-Jen Chuang
- School of Public Health, College of Public Health and Nutrition, Taipei Medical University, Taipei 110, Taiwan
- Department of Public Health, School of Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan
| | - Meng-Ru Dong
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei 106, Taiwan
| | - Purnima Laishram
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei 106, Taiwan
| | - Gui-Bing Hong
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei 106, Taiwan
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Bhanot V, Pali S, Panwar J. Understanding the in silico aspects of bacterial catabolic cascade for styrene degradation. Proteins 2023; 91:532-541. [PMID: 36416087 DOI: 10.1002/prot.26447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 10/31/2022] [Accepted: 11/15/2022] [Indexed: 11/24/2022]
Abstract
Styrene is a nonpolar organic compound used in very high volume for the industrial scale production of commercially important polymers such as polystyrene resins as well as copolymers like acrylonitrile butadiene styrene, latex, and rubber. These resins are widely used in the manufacturing of various products including single-use plastics such as disposable cups and containers, protective packaging, heat insulation, and so forth. The large-scale utilization leads to the over-accumulation of styrene waste in the environment causing deleterious health risks including cancer, neurological impairment, dysbiosis of central nervous system, and respiratory problems. To eliminate the accumulating waste. Microbial enzyme-based system represents the most environmental friendly and sustainable approach for elimination of styrene waste. However, comprehensive understanding of the enzyme-substrate interaction and associated pathways would be crucial for developing large-scale disposal systems. This study aims to understand the molecular interaction between the protein-ligand complexes of the styrene catabolic reactions by bacterial enzymes of sty operon. Molecular docking analysis for catalytic enzymes namely, styrene monooxygenase (SMO), styrene oxide isomerase (SOI), and phenylacetaldehyde dehydrogenase (PAD) of the bacterial sty operon was carried out with their individual substrates, that is, styrene, styrene oxide, and phenylacetic acid, respectively. The binding energy, amino acids forming binding cavity, and binding interactions between the protein-ligand binding sites were calculated for each case. The obtained binding energies showed a stable association of these complexes indicating the future scope of their utilization for large-scale bioremediation of styrene, and its commercially used polymers and copolymers.
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Affiliation(s)
- Vishalakshi Bhanot
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, Rajasthan, India
| | - Snigdha Pali
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, Rajasthan, India
| | - Jitendra Panwar
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, Rajasthan, India
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Liang C, Ye Q, Huang Y, Zhang Z, Wang C, Wang Y, Wang H. Distribution of the new functional marker gene (pahE) of aerobic polycyclic aromatic hydrocarbon (PAHs) degrading bacteria in different ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 865:161233. [PMID: 36586685 DOI: 10.1016/j.scitotenv.2022.161233] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 12/18/2022] [Accepted: 12/23/2022] [Indexed: 06/17/2023]
Abstract
Understanding the degradation potentials in PAHs-contaminated sites is significant for formulating effective bioremediation strategies. pahE encoding PAHs hydratase-aldolase has been proven as a better new functional marker gene of aerobic PAHs-degrading bacteria to assess the biodegradation potential of indigenous PAHs-degrading bacterial population. However, the distribution of pahE and its relationship with environmental factors remain unknown. The present study observed spatial variations in the diversity and abundance of pahE across oilfield soils, mangrove sediments, and urban roadside soils. nahE from Pseudomonas, bphE from Hyphomonas oceanitis, nagE from Comamonas testosterone, and novel pahE genes were widely present in these PAHs-polluted ecosystems. The abundance of pahE in PAHs-contaminated sites was in the range of 105-106 copies·g-1 (dry weight). Redundancy analysis and Pearson's correlation analysis implied that the distribution of pahE in the PAHs-contaminated environment was mainly shaped by environmental factors such as PAHs pollution level, nutrient level, salinity, and water content. This work was the first to explore the distribution of the new functional marker gene (pahE) and its links with environmental parameters, which provided new insights into the ecophysiology and distribution of indigenous aerobic PAHs-degrading bacteria in contaminated sites.
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Affiliation(s)
- Chengyue Liang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Quanhui Ye
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Yong Huang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Zuotao Zhang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Chongyang Wang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Yun Wang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hui Wang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
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Malik S, Kumar D. Perspectives of nanomaterials in microbial remediation of heavy metals and their environmental consequences: A review. Biotechnol Genet Eng Rev 2023:1-48. [PMID: 36871166 DOI: 10.1080/02648725.2023.2182546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Accepted: 02/06/2023] [Indexed: 03/06/2023]
Abstract
Nanomaterials (NMs) have diverse applications in various sectors, such as decontaminating heavy metals from drinking water, wastewater, and soil. Their degradation efficiency can be enhanced through the application of microbes. As microbial strain releases enzymes, which leads to the degradation of HMs. Therefore, nanotechnology and microbial-assisted remediation-based methods help us develop a remediation process with practical utility, speed, and less environmental toxicity. This review focuses on the success achieved for the bioremediation of heavy metals by nanoparticles and microbial strains and in their integrated approach. Still, the use of NMs and heavy metals (HMs) can negatively affect the health of living organisms. This review describes various aspects of the bioremediation of heavy materials using microbial nanotechnology. Their safe and specific use supported by bio-based technology paves the way for their better remediation. We discuss the utility of nanomaterials for removing heavy metals from wastewater, toxicity studies and issues to the environment with their practical implications. Nanomaterial assisted heavy metal degradation coupled with microbial technology and disposal issues are described along with detection methods. Environmental impact of nanomaterials is also discussed based on the recent work conducted by the researchers. Therefore, this review opens new avenues for future research with an impact on the environment and toxicity issues. Also, applying new biotechnological tools will help us develop better heavy metal degradation routes.
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Affiliation(s)
- Sachin Malik
- Department of Biotechnology, Deenbandhu Chhotu Ram University of Science and Technology, Sonepat, Haryana, India
| | - Dharmender Kumar
- Department of Biotechnology, Deenbandhu Chhotu Ram University of Science and Technology, Sonepat, Haryana, India
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Dziurzynski M, Gorecki A, Pawlowska J, Istel L, Decewicz P, Golec P, Styczynski M, Poszytek K, Rokowska A, Gorniak D, Dziewit L. Revealing the diversity of bacteria and fungi in the active layer of permafrost at Spitsbergen island (Arctic) - Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 856:159072. [PMID: 36179845 DOI: 10.1016/j.scitotenv.2022.159072] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 09/22/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Arctic soils are constantly subjected to extreme environmental conditions such as low humidity, strong winds, high salinity, freeze-thaw cycles, UV exposition, and low nutrient availability, therefore, they have developed unique microbial ecosystems. These environments provide excellent opportunities to study microbial ecology and evolution within pristine (i.e. with limited anthropogenic influence) regions since the High Arctic is still considered one of the wildest and least explored environments on the planet. This environment is also of interest for the screening and recovery of unique microbial strains suitable for various biotechnological applications. In this study, a combination of culture-depended and culture-independent approaches was used to determine the cultivation bias in studies of the diversity of cold-active microorganisms. Cultivation bias is a reduction in recovered diversity, introduced when applying a classical culturing technique. Six different soil types, collected in the vicinity of the Polish Polar Station Hornsund (Spitsbergen, Norway), were tested. It was revealed that the used media allowed recovery of only 6.37 % of bacterial and 20 % of fungal genera when compared with a culture-independent approach. Moreover, it was shown that a combination of R2A and Marine Broth media recovered as much as 93.6 % of all cultivable bacterial genera detected in this study. Based on these results, a novel protocol for genome-guided bioprospecting, combining a culture-dependent approach, metabarcoding, next-generation sequencing, and genomic data reuse was developed. With this methodology, 14 psychrotolerant, multi-metal-resistant strains, including the highly promising Rhodococcus spp., were obtained. These strains, besides increased metal tolerance, have a petroleum hydrocarbon utilization capacity, and thus may be good candidates for future bioremediation technologies, also suited to permanently cold regions.
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Affiliation(s)
- Mikolaj Dziurzynski
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Adrian Gorecki
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Julia Pawlowska
- Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Zwirki i Wigury 101, 02-89 Warsaw, Poland
| | - Lukasz Istel
- Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Zwirki i Wigury 101, 02-89 Warsaw, Poland
| | - Przemyslaw Decewicz
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Piotr Golec
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland; Department of Molecular Virology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Michal Styczynski
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Krzysztof Poszytek
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Anna Rokowska
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Dorota Gorniak
- Department of Microbiology and Mycology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1A, 10-719 Olsztyn, Poland
| | - Lukasz Dziewit
- Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland.
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Rafeeq H, Afsheen N, Rafique S, Arshad A, Intisar M, Hussain A, Bilal M, Iqbal HMN. Genetically engineered microorganisms for environmental remediation. CHEMOSPHERE 2023; 310:136751. [PMID: 36209847 DOI: 10.1016/j.chemosphere.2022.136751] [Citation(s) in RCA: 27] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 09/12/2022] [Accepted: 10/02/2022] [Indexed: 06/16/2023]
Abstract
In the recent era, the increasing persistence of hazardous contaminants is badly affecting the globe in many ways. Due to high environmental contamination, almost every second species on earth facing the worst issue in their survival. Advances in newer remediation approaches may help enhance bioremediation's quality, while conventional procedures have failed to remove hazardous compounds from the environment. Chemical and physical waste cleanup approaches have been used in current circumstances; however, these methods are costly and harmful to the environment. Thus, there has been a rise in the use of bioremediation due to an increase in environmental contamination, which led to the development of genetically engineered microbes (GEMs). It is safer and more cost-effective to use engineered microorganisms rather than alternative methods. GEMs are created by introducing a stronger protein into bacteria through biotechnology or genetic engineering to enhance the desired trait. Biodegradation of oil spills, halobenzoates naphthalenes, toluenes, trichloroethylene, octanes, xylenes etc. has been accomplished using GEMs such bacteria, fungus, and algae. Biotechnologically induced microorganisms are more powerful than naturally occurring ones and may degrade contaminants faster because they can quickly adapt to new pollutants they encounter or co-metabolize. Genetic engineering is a worthy process that will benefit the environment and ultimately the health of our people.
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Affiliation(s)
- Hamza Rafeeq
- Department of Biochemistry, Riphah International University, Faisalabad Campus, Faisalabad, 38000, Pakistan
| | - Nadia Afsheen
- Department of Biochemistry, Riphah International University, Faisalabad Campus, Faisalabad, 38000, Pakistan
| | - Sadia Rafique
- Departement of Pharmacy, Riphah International University, Faisalabad Campus, Faisalabad, 38000, Pakistan
| | - Arooj Arshad
- Department of Biochemistry, University of Agriculture Faisalabad, 38000, Pakistan
| | - Maham Intisar
- Department of Biochemistry, University of Agriculture Faisalabad, 38000, Pakistan
| | - Asim Hussain
- Department of Biochemistry, University of Agriculture Faisalabad, 38000, Pakistan
| | - Muhammad Bilal
- Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Berdychowo 4, PL-60695 Poznan, Poland.
| | - Hafiz M N Iqbal
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey, 64849, Mexico.
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Imam A, Suman SK, Singh P, Vempatapu BP, Tripathi D, Ray A, Kanaujia PK. Proteomic response of Pseudomonas aeruginosa IIPIS-8 during rapid and efficient degradation of naphthalene. ENVIRONMENTAL RESEARCH 2023; 216:114511. [PMID: 36265600 DOI: 10.1016/j.envres.2022.114511] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 09/05/2022] [Accepted: 10/02/2022] [Indexed: 06/16/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are widely distributed in the ecosystem and are of significant concern due to their toxicity and mutagenicity. Bioremediation of PAHs is a popular and benign approach that ameliorates the environment. This study investigated the biodegradation and proteome response of Pseudomonas aeruginosa IIPIS-8 for two-ringed PAH: naphthalene (NAP) to understand proteome alteration during its bioremediation. Rapid biodegradation was observed up to 98 ± 1.26% and 84 ± 1.03%, respectively, for initial concentrations of 100 mg L-1 and 500 mg L-1 of NAP. Degradation followed first-order kinetics with rate constants of 0.12 h-1 and 0.06 h-1 and half-life (t1/2) of 5.7 h and 11.3 h, respectively. Additionally, the occurrence of key ring cleavage and linear chain intermediates, 2,3,4,5,6, -pentamethyl acetophenone, 1-octanol 2-butyl, and hexadecanoic acid supported complete NAP degradation. Proteomics study of IIPIS-8 throws light on the impact of protein expression, in which 415 proteins were quantified in sequential windowed acquisition of all theoretical fragment ion mass spectra (SWATH-MS) analysis, of which 97 were found to be significantly up-regulated and 75 were significantly down-regulated by ≥ 2-fold change (p values ≤ 0.05), during the NAP degradation. The study also listed the up-regulation of several enzymes, including oxido-reductases, hydrolases, and catalases, potentially involved in NAP degradation. Overall, differential protein expression, through proteomics study, demonstrated IIPIS-8's capability to efficiently assimilate NAP in their metabolic pathways even in a high concentration of NAP.
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Affiliation(s)
- Arfin Imam
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India; Material Resource Efficiency Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, 201002, India
| | - Sunil Kumar Suman
- Material Resource Efficiency Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, 201002, India.
| | - Praveen Singh
- CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, 201002, India
| | - Bhanu Prasad Vempatapu
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India
| | - Deependra Tripathi
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India
| | - Anjan Ray
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, 201002, India
| | - Pankaj K Kanaujia
- Analytical Sciences Division, CSIR-Indian Institute of Petroleum, Haridwar Road, Dehradun, 248005, Uttarakhand, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDC Campus, Ghaziabad, 201002, India.
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Liu Y, Wei F, Xu R, Cheng T, Ma Y. Insights into the Binding Interaction of Catechol 1,2-Dioxygenase with Catechol in Achromobacter xylosoxidans DN002. Appl Biochem Biotechnol 2023; 195:298-313. [PMID: 36074236 DOI: 10.1007/s12010-022-04129-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/28/2022] [Indexed: 01/13/2023]
Abstract
Microbial remediation has become one of the promising ways to eliminate polycyclic aromatic hydrocarbons (PAHs) pollution due to its efficient enzyme metabolism system. Catechol 1,2-dioxygenase (C12O) is a crucial rate-limiting enzyme in the degradation pathway of PAHs in Achromobacter xylosoxidans DN002 that opens the benzene ring through the ortho-cleavage pathway. However, little attention has been given to explore the interaction mechanism of relevant enzyme-substrate. This study aims to investigate the binding interaction between C12O of strain DN002 and catechol by means of a molecular biological approach combined with homology modeling, molecular docking, and multiple spectroscopies. The removal rate of catechol in the mutant strain of cat A deletion was only 12.03%, compared to the wild-type strain (54.21%). A Ramachandran plot of active site regions of the primary amino acid sequences in the native enzyme showed that 93.5% sequences were in the most favored regions on account of the results of homology modeling, while an additional 6.2% amino acid sequences were found in conditionally allowed regions, and 0.4% in generously allowed regions. The binding pocket of C12O with catechol was analyzed to obtain that the catalytic trimeric group of Tyr164-His224-His226 was proven to be great vital for the ring-opening reaction of catechol by molecular docking. In the native enzyme, binding complexes were spontaneously formed by hydrophobic interactions. Binding constants and thermodynamic potentials from fluorescence spectra indicated that catechol effectively quenched the intrinsic fluorescence of C12O in the C12O/catechol complex via conventional static and dynamic quenching mechanisms of C12O. The results of ultraviolet and visible (UV) spectra, synchronous fluorescence, and circular dichroism (CD) spectra revealed conspicuous changes in the local conformation, and site-directed mutagenesis confirmed the role of predicted key residues during catalysis, wherein His226 had a significant effect on catechol utilization by C12O. This is the first report to reveal interactions of C12O with substrate from the molecular docking results, providing the mechanistic understanding of representative dioxygenases involved in aromatic compound degradation, and a solid foundation for further site modifications as well as strategies for the directed evolution of this enzyme.
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Affiliation(s)
- Yani Liu
- Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, 229 Taibai North Rd, Xi'an, Shaanxi, 710069, People's Republic of China
| | - Fengdan Wei
- Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, 229 Taibai North Rd, Xi'an, Shaanxi, 710069, People's Republic of China
| | - Rui Xu
- Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, 229 Taibai North Rd, Xi'an, Shaanxi, 710069, People's Republic of China
| | - Tao Cheng
- Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, 229 Taibai North Rd, Xi'an, Shaanxi, 710069, People's Republic of China
| | - Yanling Ma
- Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, 229 Taibai North Rd, Xi'an, Shaanxi, 710069, People's Republic of China.
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Becerril Mercado JE, García de Llasera MP, Méndez García M. Size Exclusion Chromatography Protein Profile of Selenastrum capricornutum Culture Extracts Degrading Benzo( a)Pyrene. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2159987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- José Eduardo Becerril Mercado
- Departamento de Química Analítica, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, México, México
| | - Martha Patricia García de Llasera
- Departamento de Química Analítica, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, México, México
| | - Manuel Méndez García
- Departamento de Química Analítica, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, México, México
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Liu X, Liu Y, Li S, Zhang A, Liu Z, Li Z. Metabolic fates and response strategies of microorganisms to aromatic compounds with different structures. BIORESOURCE TECHNOLOGY 2022; 366:128210. [PMID: 36323372 DOI: 10.1016/j.biortech.2022.128210] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 10/21/2022] [Accepted: 10/22/2022] [Indexed: 06/16/2023]
Abstract
In this study, the metabolic fates and response strategies of microorganisms to aromatic compounds with different structures (phenol, naphthalene, phenanthrene, and pyrene) were comparatively studied. The results indicated that the phenol (90.9%), naphthalene (68.4%), phenanthrene (69.5%), and pyrene (67.1%) could be mineralized, and the biotoxicity also has been drastically reduced. The degradation characteristics and toxic effects were closely related to their chemical structure. The microorganisms showed different response strategies to aromatic compounds with different structures. Phenol had a simple structure and low toxicity, the microbial community structure was simple, and the rapid expression of key enzymes enabled it to be rapidly degraded. For the hydrophobic and complex naphthalene, phenanthrene, and pyrene, the more complex the structure, the higher the microbial diversity, the EPS showed different response for the purpose of improving their bioavailability, and the activity of key enzymes was positively correlated with their structural complexity.
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Affiliation(s)
- Xingshe Liu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China
| | - Yongjun Liu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China.
| | - Shuang Li
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China
| | - Aining Zhang
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Zhe Liu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Zhihua Li
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
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Binding and removal of polycyclic aromatic hydrocarbons in cold smoked sausage and beef using probiotic strains. Food Res Int 2022; 161:111793. [DOI: 10.1016/j.foodres.2022.111793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 07/09/2022] [Accepted: 08/18/2022] [Indexed: 11/17/2022]
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Robin SL, Marchand C. Polycyclic aromatic hydrocarbons (PAHs) in mangrove ecosystems: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 311:119959. [PMID: 35977644 DOI: 10.1016/j.envpol.2022.119959] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 07/25/2022] [Accepted: 08/09/2022] [Indexed: 06/15/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are organic pollutants of increasing concern in the different fields of the environment and human health. There are 16 of them that are recognized as priority pollutants by the US environmental protection agency due to their mutagenic and carcinogenic potentials. Due to their hydrophobicity and stability, they are persistent in the environment and can be transported over long distances. Their toxicological effects on multiple species, including humans, as well as their bioaccumulation in the food web became major topics in organic pollutants research this last decade. In the environment, multiple studies have been conducted on their accumulation in the soil and their degradation processes resulting in numerous review papers. However, the dynamics of PAHs in mangrove ecosystems is not yet completely understood. In this review paper, an exhaustive presentation of what is known about PAHs and their transfer, accumulation, and degradation in mangrove ecosystems is offered. This article brings to light the knowledge already acquired on the subject and the perspective research necessary to fully comprehend PAHs dynamics in mangrove ecosystems.
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Affiliation(s)
- Sarah Louise Robin
- Institut de Sciences Exactes et Appliquées (ISEA EA7484), Université de la Nouvelle-Calédonie, 145 Avenue James Cook, Nouville, BP R4 98851, Nouméa Cedex, New Caledonia.
| | - Cyril Marchand
- Institut de Sciences Exactes et Appliquées (ISEA EA7484), Université de la Nouvelle-Calédonie, 145 Avenue James Cook, Nouville, BP R4 98851, Nouméa Cedex, New Caledonia
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Chen C, Liu L, Li W, Lan Y, Li Y. Reutilization of waste self-heating pad by loading cobalt: A magnetic and green peroxymonosulfate activator for naphthalene degradation. JOURNAL OF HAZARDOUS MATERIALS 2022; 439:129572. [PMID: 35863229 DOI: 10.1016/j.jhazmat.2022.129572] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 06/10/2022] [Accepted: 07/08/2022] [Indexed: 06/15/2023]
Abstract
The disposal and recovery of solid wastes and the remediation of polycyclic aromatic hydrocarbons (PAHs) are the key issues of environmental pollution control. In this study, micro cobalt loaded on iron-carbon-vermiculite composite (Co-ICV) was prepared for the first time by the reutilization of waste self-heating pad as a carrier of cobalt catalyst, which exhibited better performance than bulk cobalt catalyst in peroxymonosulfate (PMS) activation for the degradation of naphthalene (NAP) in water. Above 98% of NAP (2.0 mg/L) was effectively eliminated within 15 min by the Co-ICV (0.2 g/L) activated PMS (0.5 mmol/L) in a pH range of 5.0-9.0. High magnetism and very limited cobalt leaching realized the convenient separation and stable reusability of Co-ICV. Mechanism investigation indicated that Co(II) species were the main active sites to activate PMS decomposition for the generation of SO4•- and •OH, contributing to the rapid degradation of NAP. Meanwhile, the NAP degradation pathways were deduced via combining the identification of intermediates and the calculation of frontier electron densities (FEDs). Furthermore, the ability of the Co-ICV/PMS system for the NAP degradation in actual lake water and the removal of other refractory pollutants demonstrated that the combination of Co-ICV and PMS was a prospective method for the removal of PAHs. Overall, Co-ICV is a green and promising activator of PMS, and the future development will provide more insights into the comprehensive utilization of solid wastes for the remediation of wastewater containing PAHs.
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Affiliation(s)
- Cheng Chen
- College of Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Li Liu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Wei Li
- China Tobacco Jiangsu Industrial Co., Ltd., Nanjing 210019, PR China
| | - Yeqing Lan
- College of Sciences, Nanjing Agricultural University, Nanjing 210095, PR China.
| | - Ying Li
- College of Sciences, Nanjing Agricultural University, Nanjing 210095, PR China.
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Yang L, Liu Y, Li C, Liu Z, Liu X, Wei C, Yang Z, Zhang A. Biodegradation time series characteristics and metabolic fate of different aromatic compounds in the biochemical treatment process of coal chemical wastewater. BIORESOURCE TECHNOLOGY 2022; 361:127688. [PMID: 35901864 DOI: 10.1016/j.biortech.2022.127688] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 07/19/2022] [Accepted: 07/21/2022] [Indexed: 06/15/2023]
Abstract
In this study, the biochemical treatment system of coal chemical wastewater (CCW) was constructed to degrade aromatic compounds. The biodegradation time series characteristics of 8 benzene series (BTEX), 6 phenols, 10 polycyclic aromatic hydrocarbons (PAHs), and 3 nitrogen heterocyclic compounds (NHCs) were detected. The aim was to clarify the storage characteristics and dynamic transformation in water, EPS, and cells of these aromatic compounds. The results showed that BTEX and NHCs were more easily degraded than PAHs and phenols. Furthermore, aromatic compounds were initially adsorbed into EPS from water by microorganisms. Then, some were degraded, and others were transferred into the cell. Finally, they were completely degraded. The percentage of surplus content with them in EPS and cells were PAHs > phenols > NHCs = BTEX. The study could lay a theoretical foundation for the regulation and harmless treatment of the CCW in the stable operation of the biochemical treatment system.
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Affiliation(s)
- Lu Yang
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Yongjun Liu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China.
| | - Chen Li
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Zhe Liu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Xingshe Liu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Chunxiao Wei
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Zhuangzhuang Yang
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Aining Zhang
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Yan Ta Road. No.13, Xi'an 710055, China; Key Lab of Northwest Water Resource, Environment and Ecology, Ministry of Education, Xi'an University of Architecture and Technology, Xi'an 710055, China
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