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Ossadtchi A, Semenkov I, Zhuravleva A, Kozunov V, Serikov O, Voloshina E. Representational dissimilarity component analysis (ReDisCA). Neuroimage 2024:120868. [PMID: 39343110 DOI: 10.1016/j.neuroimage.2024.120868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 09/20/2024] [Accepted: 09/23/2024] [Indexed: 10/01/2024] Open
Abstract
The principle of Representational Similarity Analysis (RSA) posits that neural representations reflect the structure of encoded information, allowing exploration of spatial and temporal organization of brain information processing. Traditional RSA when applied to EEG or MEG data faces challenges in accessing activation time series at the brain source level due to modeling complexities and insufficient geometric/anatomical data. To address this, we introduce Representational Dissimilarity Component Analysis (ReDisCA), a method for estimating spatial-temporal components in EEG or MEG responses aligned with a target representational dissimilarity matrix (RDM). ReDisCA yields informative spatial filters and associated topographies, offering insights into the location of "representationally relevant" sources. Applied to evoked response time series, ReDisCA produces temporal source activation profiles with the desired RDM. Importantly, while ReDisCA does not require inverse modeling its output is consistent with EEG and MEG observation equation and can be used as an input to rigorous source localization procedures. Demonstrating ReDisCA's efficacy through simulations and comparison with conventional methods, we show superior source localization accuracy and apply the method to real EEG and MEG datasets, revealing physiologically plausible representational structures without inverse modeling. ReDisCA adds to the family of inverse modeling free methods such as independent component analysis (Makeig, 1995), Spatial spectral decomposition (Nikulin, 2011), and Source power comodulation (Dähne, 2014) designed for extraction sources with desired properties from EEG or MEG data. Extending its utility beyond EEG and MEG analysis, ReDisCA is likely to find application in fMRI data analysis and exploration of representational structures emerging in multilayered artificial neural networks.
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Affiliation(s)
- Alexei Ossadtchi
- Higher School of Economics, Moscow, Russia; LIFT, Life Improvement by Future Technologies Institute, Moscow, Russia.
| | - Ilia Semenkov
- Higher School of Economics, Moscow, Russia; Artificial Intelligence Research Institute, Moscow, Russia
| | - Anna Zhuravleva
- Higher School of Economics, Moscow, Russia; Artificial Intelligence Research Institute, Moscow, Russia
| | - Vladimir Kozunov
- MEG Centre, Moscow State University of Psychology and Education, Russia
| | - Oleg Serikov
- AI Initiative, King Abdullah University of Science and Technology, Kingdom of Saudi Arabia
| | - Ekaterina Voloshina
- Higher School of Economics, Moscow, Russia; Artificial Intelligence Research Institute, Moscow, Russia
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Liu K, Peng S, Liang C, Yu Z, Xiao B, Wang G, Wu W. VSSI-GGD: A Variation Sparse EEG Source Imaging Approach Based on Generalized Gaussian Distribution. IEEE Trans Neural Syst Rehabil Eng 2024; 32:1524-1534. [PMID: 38564353 DOI: 10.1109/tnsre.2024.3383452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Electroencephalographic (EEG) source imaging (ESI) is a powerful method for studying brain functions and surgical resection of epileptic foci. However, accurately estimating the location and extent of brain sources remains challenging due to noise and background interference in EEG signals. To reconstruct extended brain sources, we propose a new ESI method called Variation Sparse Source Imaging based on Generalized Gaussian Distribution (VSSI-GGD). VSSI-GGD uses the generalized Gaussian prior as a sparse constraint on the spatial variation domain and embeds it into the Bayesian framework for source estimation. Using a variational technique, we approximate the intractable true posterior with a Gaussian density. Through convex analysis, the Bayesian inference problem is transformed entirely into a series of regularized L2p -norm ( ) optimization problems, which are efficiently solved with the ADMM algorithm. Imaging results of numerical simulations and human experimental dataset analysis reveal the superior performance of VSSI-GGD, which provides higher spatial resolution with clear boundaries compared to benchmark algorithms. VSSI-GGD can potentially serve as an effective and robust spatiotemporal EEG source imaging method. The source code of VSSI-GGD is available at https://github.com/Mashirops/VSSI-GGD.git.
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Vorwerk J, Wolters CH, Baumgarten D. Global sensitivity of EEG source analysis to tissue conductivity uncertainties. Front Hum Neurosci 2024; 18:1335212. [PMID: 38532791 PMCID: PMC10963400 DOI: 10.3389/fnhum.2024.1335212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 01/22/2024] [Indexed: 03/28/2024] Open
Abstract
Introduction To reliably solve the EEG inverse problem, accurate EEG forward solutions based on a detailed, individual volume conductor model of the head are essential. A crucial-but often neglected-aspect in generating a volume conductor model is the choice of the tissue conductivities, as these may vary from subject to subject. In this study, we investigate the sensitivity of EEG forward and inverse solutions to tissue conductivity uncertainties for sources distributed over the whole cortex surface. Methods We employ a detailed five-compartment head model distinguishing skin, skull, cerebrospinal fluid, gray matter, and white matter, where we consider uncertainties of skin, skull, gray matter, and white matter conductivities. We use the finite element method (FEM) to calculate EEG forward solutions and goal function scans (GFS) as inverse approach. To be able to generate the large number of EEG forward solutions, we employ generalized polynomial chaos (gPC) expansions. Results For sources up to a depth of 4 cm, we find the strongest influence on the signal topography of EEG forward solutions for the skull conductivity and a notable effect for the skin conductivity. For even deeper sources, e.g., located deep in the longitudinal fissure, we find an increasing influence of the white matter conductivity. The conductivity variations translate to varying source localizations particularly for quasi-tangential sources on sulcal walls, whereas source localizations of quasi-radial sources on the top of gyri are less affected. We find a strong correlation between skull conductivity and the variation of source localizations and especially the depth of the reconstructed source for quasi-tangential sources. We furthermore find a clear but weaker correlation between depth of the reconstructed source and the skin conductivity. Discussion Our results clearly show the influence of tissue conductivity uncertainties on EEG source analysis. We find a particularly strong influence of skull and skin conductivity uncertainties.
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Affiliation(s)
- Johannes Vorwerk
- Institute of Electrical and Biomedical Engineering, UMIT TIROL—Private University for Health Sciences and Health Technology, Hall in Tirol, Austria
| | - Carsten H. Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany
- Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
| | - Daniel Baumgarten
- Institute of Electrical and Biomedical Engineering, UMIT TIROL—Private University for Health Sciences and Health Technology, Hall in Tirol, Austria
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Lahtinen J, Koulouri A, Rampp S, Wellmer J, Wolters C, Pursiainen S. Standardized hierarchical adaptive Lp regression for noise robust focal epilepsy source reconstructions. Clin Neurophysiol 2024; 159:24-40. [PMID: 38244372 DOI: 10.1016/j.clinph.2023.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 11/02/2023] [Accepted: 12/02/2023] [Indexed: 01/22/2024]
Abstract
OBJECTIVE To investigate the ability of standardization to reduce source localization errors and measurement noise uncertainties for hierarchical Bayesian algorithms with L1- and L2-norms as priors in electroencephalography and magnetoencephalography of focal epilepsy. METHODS Description of the standardization methodology relying on the Hierarchical Bayesian framework, referred to as the Standardized Hierarchical Adaptive Lp-norm Regularization (SHALpR). The performance was tested using real data from two focal epilepsy patients. Simulated data that resembled the available real data was constructed for further localization and noise robustness investigation. RESULTS The proposed algorithms were compared to their non-standardized counterparts, Standardized low-resolution brain electromagnetic tomography, Standardized Shrinking LORETA-FOCUSS, and Dynamic statistical parametric maps. Based on the simulations, the standardized Hierarchical adaptive algorithm using L2-norm was noise robust for 10 dB signal-to-noise ratio (SNR), whereas the L1-norm prior worked robustly also with 5 dB SNR. The accuracy of the standardized L1-normed methodology to localize focal activity was under 1 cm for both patients. CONCLUSIONS Numerical results of the proposed methodology display improved localization and noise robustness. The proposed methodology also outperformed the compared methods when dealing with real data. SIGNIFICANCE The proposed standardized methodology, especially when employing the L1-norm, could serve as a valuable assessment tool in surgical decision-making.
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Affiliation(s)
- Joonas Lahtinen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Alexandra Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Stefan Rampp
- Department of Neurosurgery, University Hospital Halle (Saale), Halle 06097, Germany; Department of Neurosurgery, University Hospital Erlangen, Erlangen 91054, Germany; Department of Neuroradiology, University Hospital Erlangen, Erlangen 91054, Germany.
| | - Jörg Wellmer
- Ruhr-Epileptology, Department of Neurology, University Hospital Knappschaftskrankenhaus, Ruhr-University, Bochum44892, Germany.
| | - Carsten Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster 48149, Germany; Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster 48149, Germany.
| | - Sampsa Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
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Delatolas T, Antonakakis M, Wolters CH, Zervakis M. EEG Source Analysis with a Convolutional Neural Network and Finite Element Analysis. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083731 DOI: 10.1109/embc40787.2023.10340742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
To reconstruct the electrophysiological activity of brain responses, source analysis is performed through the solution of the forward and inverse problems. The former contains a unique solution while the latter is ill-posed. In this regard, many algorithms have been suggested relying on different prior information for solving the inverse problem. Recently, neural networks have been used to deal with source analysis. However, their underlying training for inverse solutions is based on suboptimal forward modeling. In this work, we propose a CNN that is able to reconstruct EEG brain activity. To train our proposed CNN, a skull-conductivity calibrated and white matter anisotropic head model. Based on this model, we generate simulated EEG data and used them to train our CNN. We first evaluate the performance of our CNN using the simulated EEG data while a realistic application with somatosensory evoked potentials follows. From the results, we observed that the CCN correctly localized the P20/N20 component at the subject-specific Brodmann area 3b and it can potentially localize deeper sources. A comparison is also presented with well-known inverse solutions (single dipole scans and sLORETA) showing similar localization performance. Through these results, an emerging potential for real applications appears on the basis of realistic head modeling.
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Calvetti D, Pascarella A, Pitolli F, Somersalo E, Vantaggi B. The IAS-MEEG Package: A Flexible Inverse Source Reconstruction Platform for Reconstruction and Visualization of Brain Activity from M/EEG Data. Brain Topogr 2023; 36:10-22. [PMID: 36460892 PMCID: PMC9834133 DOI: 10.1007/s10548-022-00926-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 10/31/2022] [Indexed: 12/05/2022]
Abstract
We present a standalone Matlab software platform complete with visualization for the reconstruction of the neural activity in the brain from MEG or EEG data. The underlying inversion combines hierarchical Bayesian models and Krylov subspace iterative least squares solvers. The Bayesian framework of the underlying inversion algorithm allows to account for anatomical information and possible a priori belief about the focality of the reconstruction. The computational efficiency makes the software suitable for the reconstruction of lengthy time series on standard computing equipment. The algorithm requires minimal user provided input parameters, although the user can express the desired focality and accuracy of the solution. The code has been designed so as to favor the parallelization performed automatically by Matlab, according to the resources of the host computer. We demonstrate the flexibility of the platform by reconstructing activity patterns with supports of different sizes from MEG and EEG data. Moreover, we show that the software reconstructs well activity patches located either in the subcortical brain structures or on the cortex. The inverse solver and visualization modules can be used either individually or in combination. We also provide a version of the inverse solver that can be used within Brainstorm toolbox. All the software is available online by Github, including the Brainstorm plugin, with accompanying documentation and test data.
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Affiliation(s)
- Daniela Calvetti
- Department of Mathematics, Applied Mathematics and Statistics, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106 USA
| | - Annalisa Pascarella
- Istituto per le Applicazioni del Calcolo “M. Picone”, National Research Council, Via dei Taurini 19, 00185 Rome, Italy
| | - Francesca Pitolli
- Department of Basic and Applied Sciences for Engineering, University of Rome “La Sapienza”, Via Scarpa 16, 00161 Rome, Italy
| | - Erkki Somersalo
- Department of Mathematics, Applied Mathematics and Statistics, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106 USA
| | - Barbara Vantaggi
- Dipartimento Metodi e Modelli per l’Economia, il Territorio e la Finanza MEMOTEF, University of Rome “La Sapienza”, Via Castro Laurenziano 9, 00161 Rome, Italy
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Qu M, Chang C, Wang J, Hu J, Hu N. Nonnegative block-sparse Bayesian learning algorithm for EEG brain source localization. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Directionality of the injected current targeting the P20/N20 source determines the efficacy of 140 Hz transcranial alternating current stimulation (tACS)-induced aftereffects in the somatosensory cortex. PLoS One 2022; 17:e0266107. [PMID: 35324989 PMCID: PMC8947130 DOI: 10.1371/journal.pone.0266107] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 03/14/2022] [Indexed: 11/19/2022] Open
Abstract
Interindividual anatomical differences in the human cortex can lead to suboptimal current directions and may result in response variability of transcranial electrical stimulation methods. These differences in brain anatomy require individualized electrode stimulation montages to induce an optimal current density in the targeted area of each individual subject. We aimed to explore the possible modulatory effects of 140 Hz transcranial alternating current stimulation (tACS) on the somatosensory cortex using personalized multi-electrode stimulation montages. In two randomized experiments using either tactile finger or median nerve stimulation, we measured by evoked potentials the plasticity aftereffects and oscillatory power changes after 140 Hz tACS at 1.0 mA as compared to sham stimulation (n = 17, male = 9). We found a decrease in the power of oscillatory mu-rhythms during and immediately after tactile discrimination tasks, indicating an engagement of the somatosensory system during stimulus encoding. On a group level both the oscillatory power and the evoked potential amplitudes were not modulated by tACS neither after tactile finger stimulation nor after median nerve stimulation as compared to sham stimulation. On an individual level we could however demonstrate that lower angular difference (i.e., differences between the injected current vector in the target region and the source orientation vector) is associated with significantly higher changes in both P20/N20 and N30/P30 source activities. Our findings suggest that the higher the directionality of the injected current correlates to the dipole orientation the greater the tACS-induced aftereffects are.
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Reconfiguration of Cortical Brain Network from Searching to Spotting for Dynamic Visual Targets. J Neurosci Methods 2022; 375:109577. [PMID: 35339507 DOI: 10.1016/j.jneumeth.2022.109577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 12/28/2021] [Accepted: 03/20/2022] [Indexed: 11/22/2022]
Abstract
BACKGROUND Detecting dynamic targets from complex visual scenes is an important problem in real world. However, the cognitive mechanism accounting for dynamic visual target detection remains unclear. NEW METHOD Herein, we aim to explore the cognitive process of dynamic visual target detection from searching to spotting and provide more concrete evidence for cognitive studies related to target detection. Cortical source responses with high spatiotemporal resolution were reconstructed from scalp EEG signals. Then, time-varying cortical networks were built using adaptive directed transfer function to explore the cognitive processes while detecting the dynamic visual target. RESULTS The experimental results demonstrated that the dynamic visual target detection enhanced the activation in both the visual and attention networks. Specially, the information flow from the middle occipital gyrus (MOG) mainly contributed to the position function, whereas the activation of the prefrontal cortex (PFC) reflected spatial attention maintenance. CONCLUSION The left "frontal-central-parietal" network played as a leading information source in dynamic target detection tasks. These findings provide new insights into cognitive processes of dynamic visual target detection. DATA AVAILABILITY STATEMENT The datasets in this study are available on request to the corresponding author.
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Reconstructing subcortical and cortical somatosensory activity via the RAMUS inverse source analysis technique using median nerve SEP data. Neuroimage 2021; 245:118726. [PMID: 34838947 DOI: 10.1016/j.neuroimage.2021.118726] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 10/22/2021] [Accepted: 11/12/2021] [Indexed: 11/23/2022] Open
Abstract
This study concerns reconstructing brain activity at various depths based on non-invasive EEG (electroencephalography) scalp measurements. We aimed at demonstrating the potential of the RAMUS (randomized multiresolution scanning) technique in localizing weakly distinguishable far-field sources in combination with coinciding cortical activity. As we have shown earlier theoretically and through simulations, RAMUS is a novel mathematical method that by employing the multigrid concept, allows marginalizing noise and depth bias effects and thus enables the recovery of both cortical and subcortical brain activity. To show this capability with experimental data, we examined the 14-30 ms post-stimulus somatosensory evoked potential (SEP) responses of human median nerve stimulation in three healthy adult subjects. We aim at reconstructing the different response components by evaluating a RAMUS-based estimate for the primary current density in the nervous tissue. We present source reconstructions obtained with RAMUS and compare them with the literature knowledge of the SEP components and the outcome of the unit-noise gain beamformer (UGNB) and standardized low-resolution brain electromagnetic tomography (sLORETA). We also analyzed the effect of the iterative alternating sequential technique, the optimization technique of RAMUS, compared to the classical minimum norm estimation (MNE) technique. Matching with our previous numerical studies, the current results suggest that RAMUS could have the potential to enhance the detection of simultaneous deep and cortical components and the distinction between the evoked sulcal and gyral activity.
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He Q, Pursiainen S. An extended application ‘Brain Q’ processing EEG and MEG data of finger stimulation extended from ‘Zeffiro’ based on machine learning and signal processing. COGN SYST RES 2021. [DOI: 10.1016/j.cogsys.2020.08.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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12
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EEG extended source imaging with structured sparsity and $$L_1$$-norm residual. Neural Comput Appl 2021. [DOI: 10.1007/s00521-020-05603-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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13
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Song X, Zeng Y, Tong L, Shu J, Li H, Yan B. Neural mechanism for dynamic distractor processing during video target detection: Insights from time-varying networks in the cerebral cortex. Brain Res 2021; 1765:147502. [PMID: 33901488 DOI: 10.1016/j.brainres.2021.147502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 04/09/2021] [Accepted: 04/20/2021] [Indexed: 11/30/2022]
Abstract
In dynamic video target detection tasks, distractors may suddenly appear due to the dynamicity of the visual scene and the uncertainty of the visual information, strongly influencing participants' attention and target detection performance. Moreover, the neural mechanism that accounts for dynamic distractor processing remains unknown, which makes it difficult to compensate for in EEG-based video target detection. Here, cortical activities with high spatiotemporal resolution were reconstructed using the source localization method. The time-varying networks among important brain regions in different cognitive phases, including information integration, decision-making, and execution, were identified to investigate the neural mechanism of dynamic distractor processing. The experimental results indicated that dynamic distractors could induce a P3-like component. In addition, there was obvious asymmetry between the two hemispheres during video target detection. Specifically, the brain responses induced by dynamic distractors were weak and more concentrated in the left hemisphere during the information integration phase; left superior frontal gyrus activity related to preparation for the presence of distractors was critical, while the attention network and primary visual network, especially in the left visual pathway, were more active for dynamic targets during the decision-making phase. These findings provide guidance for designing an effective EEG-based model for dynamic video target detection.
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Affiliation(s)
- Xiyu Song
- The Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategy Support Force Information Engineering University, Zhengzhou 450001, China.
| | - Ying Zeng
- The Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategy Support Force Information Engineering University, Zhengzhou 450001, China; The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuro Information, University of Electronic Science and Technology of China, Chengdu 610000, China.
| | - Li Tong
- The Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategy Support Force Information Engineering University, Zhengzhou 450001, China.
| | - Jun Shu
- The Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategy Support Force Information Engineering University, Zhengzhou 450001, China.
| | - Huimin Li
- The Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategy Support Force Information Engineering University, Zhengzhou 450001, China; Software Technology School of Zhengzhou University, Zhengzhou 450001, China.
| | - Bin Yan
- The Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategy Support Force Information Engineering University, Zhengzhou 450001, China.
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Granados Barbero R, De Vos A, Wouters J. The identification of predominant auditory steady-state response brain sources in electroencephalography using denoising source separation. Eur J Neurosci 2021; 53:3688-3709. [PMID: 33811405 DOI: 10.1111/ejn.15219] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 01/26/2021] [Accepted: 03/29/2021] [Indexed: 12/24/2022]
Abstract
Different approaches have been used to extract auditory steady-state responses (ASSRs) from electroencephalography (EEG) recordings, including region-related electrode configurations (electrode level) and the manual placement of equivalent current dipoles (source level). Inherent limitations of these approaches are the assumption of the anatomical origin and the omission of activity generated by secondary sources. Data-driven methods such as independent component analysis (ICA) seem to avoid these limitations but only to face new others such as the presence of ASSRs with similar properties in different components and the manual selection protocol to select and classify the most relevant components carrying ASSRs. We propose the novel approach of applying a spatial filter to these components in order to extract the most relevant information. We aimed to develop a method based on the reproducibility across trials that performs reliably in low-signal-to-noise ratio (SNR) scenarios using denoising source separation (DSS). DSS combined with ICA successfully reduced the number of components and extracted the most relevant ASSR at 4, 10 and 20 Hz stimulation in group and individual level studies of EEG adolescent data. The anatomical brain location for these low stimulation frequencies showed results in cortical areas with relatively small dispersion. However, for 40 and 80 Hz, results with regard to the number of components and the anatomical origin were less clear. At all stimulation frequencies the outcome measures were consistent with literature, and the partial rejection of inter-subject variability led to more accurate results and higher SNRs. These findings are promising for future applications in group comparison involving pathologies.
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Affiliation(s)
- Raúl Granados Barbero
- Research Group Experimental ORL, Department of Neurosciences, KU Leuven-University of Leuven, Leuven, Belgium
| | - Astrid De Vos
- Research Group Experimental ORL, Department of Neurosciences, KU Leuven-University of Leuven, Leuven, Belgium.,Parenting and Special Education Research Unit, Faculty of Psychology and Educational Sciences, KU Leuven-University of Leuven, Leuven, Belgium
| | - Jan Wouters
- Research Group Experimental ORL, Department of Neurosciences, KU Leuven-University of Leuven, Leuven, Belgium
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Dinh C, Samuelsson JG, Hunold A, Hämäläinen MS, Khan S. Contextual MEG and EEG Source Estimates Using Spatiotemporal LSTM Networks. Front Neurosci 2021; 15:552666. [PMID: 33767606 PMCID: PMC7985163 DOI: 10.3389/fnins.2021.552666] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 01/25/2021] [Indexed: 11/13/2022] Open
Abstract
Most magneto- and electroencephalography (M/EEG) based source estimation techniques derive their estimates sample wise, independently across time. However, neuronal assemblies are intricately interconnected, constraining the temporal evolution of neural activity that is detected by MEG and EEG; the observed neural currents must thus be highly context dependent. Here, we use a network of Long Short-Term Memory (LSTM) cells where the input is a sequence of past source estimates and the output is a prediction of the following estimate. This prediction is then used to correct the estimate. In this study, we applied this technique on noise-normalized minimum norm estimates (MNE). Because the correction is found by using past activity (context), we call this implementation Contextual MNE (CMNE), although this technique can be used in conjunction with any source estimation method. We test CMNE on simulated epileptiform activity and recorded auditory steady state response (ASSR) data, showing that the CMNE estimates exhibit a higher degree of spatial fidelity than the unfiltered estimates in the tested cases.
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Affiliation(s)
- Christoph Dinh
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, United States.,Department of Radiology, Massachusetts General Hospital (MGH), Charlestown, MA, United States.,Institute for Medical Engineering, Research Campus STIMULATE, Otto-von-Guericke University, Magdeburg, Germany
| | - John G Samuelsson
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, United States.,Harvard Medical School, Boston, MA, United States.,Harvard-MIT Division of Health Sciences and Technology (HST), Massachusetts Institute of Technology, Cambridge, MA, United States
| | - Alexander Hunold
- Institute of Biomedical Engineering and Informatics, Technische Universität Ilmenau, Ilmenau, Germany
| | - Matti S Hämäläinen
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, United States.,Department of Radiology, Massachusetts General Hospital (MGH), Charlestown, MA, United States.,Harvard Medical School, Boston, MA, United States
| | - Sheraz Khan
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, United States.,Department of Radiology, Massachusetts General Hospital (MGH), Charlestown, MA, United States.,Harvard Medical School, Boston, MA, United States
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Hamid L, Habboush N, Stern P, Japaridze N, Aydin Ü, Wolters CH, Claussen JC, Heute U, Stephani U, Galka A, Siniatchkin M. Source imaging of deep-brain activity using the regional spatiotemporal Kalman filter. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 200:105830. [PMID: 33250282 DOI: 10.1016/j.cmpb.2020.105830] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Accepted: 10/31/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND OBJECTIVE The human brain displays rich and complex patterns of interaction within and among brain networks that involve both cortical and subcortical brain regions. Due to the limited spatial resolution of surface electroencephalography (EEG), EEG source imaging is used to reconstruct brain sources and investigate their spatial and temporal dynamics. The majority of EEG source imaging methods fail to detect activity from subcortical brain structures. The reconstruction of subcortical sources is a challenging task because the signal from these sources is weakened and mixed with artifacts and other signals from cortical sources. In this proof-of-principle study we present a novel EEG source imaging method, the regional spatiotemporal Kalman filter (RSTKF), that can detect deep brain activity. METHODS The regional spatiotemporal Kalman filter (RSTKF) is a generalization of the spatiotemporal Kalman filter (STKF), which allows for the characterization of different regional dynamics in the brain. It is based on state-space modeling with spatially heterogeneous dynamical noise variances, since models with spatial and temporal homogeneity fail to describe the dynamical complexity of brain activity. First, RSTKF is tested using simulated EEG data from sources in the frontal lobe, putamen, and thalamus. After that, it is applied to non-averaged interictal epileptic spikes from a presurgical epilepsy patient with focal epileptic activity in the amygdalo-hippocampal complex. The results of RSTKF are compared to those of low-resolution brain electromagnetic tomography (LORETA) and of standard STKF. RESULTS Only RSTKF is successful in consistently and accurately localizing the sources in deep brain regions. Additionally, RSTKF shows improved spatial resolution compared to LORETA and STKF. CONCLUSIONS RSTKF is a generalization of STKF that allows for accurate, focal, and consistent localization of sources, especially in the deeper brain areas. In contrast to standard source imaging methods, RSTKF may find application in the localization of the epileptogenic zone in deeper brain structures, such as mesial frontal and temporal lobe epilepsies, especially in EEG recordings for which no reliable averaged spike shape can be obtained due to lack of the necessary number of spikes required to reach a certain signal-to-noise ratio level after averaging.
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Affiliation(s)
- Laith Hamid
- Department of Medical Psychology and Medical Sociology, University of Kiel, D-24113 Kiel, Germany.
| | - Nawar Habboush
- Department of Medical Psychology and Medical Sociology, University of Kiel, D-24113 Kiel, Germany
| | - Philipp Stern
- Institute of Theoretical Physics and Astrophysics, University of Kiel, D-24098 Kiel, Germany
| | - Natia Japaridze
- Department of Neuropediatrics, University of Kiel, D-24098 Kiel, Germany
| | - Ümit Aydin
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, D-48149 Münster, Germany; Multimodal Functional Imaging Lab, Department of Physics and PERFORM Centre, Concordia University, Montreal, Canada
| | - Carsten H Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, D-48149 Münster, Germany
| | - Jens Christian Claussen
- Institute of Theoretical Physics and Astrophysics, University of Kiel, D-24098 Kiel, Germany; Institute for Neuro- and Bioinformatics, University of Lübeck, D-23562 Lübeck, Germany; Mathematics EAS, Aston University, Aston Triangle, Birmingham B3 7ET, United Kingdom
| | - Ulrich Heute
- Digital Signal Processing and System Theory Group, Faculty of Engineering, University of Kiel, D-24143 Kiel, Germany
| | - Ulrich Stephani
- Department of Neuropediatrics, University of Kiel, D-24098 Kiel, Germany
| | - Andreas Galka
- Department of Medical Psychology and Medical Sociology, University of Kiel, D-24113 Kiel, Germany
| | - Michael Siniatchkin
- Department of Medical Psychology and Medical Sociology, University of Kiel, D-24113 Kiel, Germany; Department of Child and Adolescent Psychiatry and Psychotherapy, Evangelisches Klinikum Bethel gGmbH, D-33617 Bielefeld, Germany
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Rezaei A, Antonakakis M, Piastra M, Wolters CH, Pursiainen S. Parametrizing the Conditionally Gaussian Prior Model for Source Localization with Reference to the P20/N20 Component of Median Nerve SEP/SEF. Brain Sci 2020; 10:E934. [PMID: 33287441 PMCID: PMC7761863 DOI: 10.3390/brainsci10120934] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 11/17/2020] [Accepted: 11/25/2020] [Indexed: 11/17/2022] Open
Abstract
In this article, we focused on developing the conditionally Gaussian hierarchical Bayesian model (CG-HBM), which forms a superclass of several inversion methods for source localization of brain activity using somatosensory evoked potential (SEP) and field (SEF) measurements. The goal of this proof-of-concept study was to improve the applicability of the CG-HBM as a superclass by proposing a robust approach for the parametrization of focal source scenarios. We aimed at a parametrization that is invariant with respect to altering the noise level and the source space size. The posterior difference between the gamma and inverse gamma hyperprior was minimized by optimizing the shape parameter, while a suitable range for the scale parameter can be obtained via the prior-over-measurement signal-to-noise ratio, which we introduce as a new concept in this study. In the source localization experiments, the primary generator of the P20/N20 component was detected in the Brodmann area 3b using the CG-HBM approach and a parameter range derived from the existing knowledge of the Tikhonov-regularized minimum norm estimate, i.e., the classical Gaussian prior model. Moreover, it seems that the detection of deep thalamic activity simultaneously with the P20/N20 component with the gamma hyperprior can be enhanced while using a close-to-optimal shape parameter value.
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Affiliation(s)
- Atena Rezaei
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Hervanta Campus, P.O. Box 1001, 33014 Tampere, Finland;
| | - Marios Antonakakis
- Institute of Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149 Münster, Germany; (M.A.); (M.P.); (C.H.W.)
| | - MariaCarla Piastra
- Institute of Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149 Münster, Germany; (M.A.); (M.P.); (C.H.W.)
- Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen Medical Centre, Kapittelweg 29, 6525 EN Nijmegen, The Netherlands
| | - Carsten H. Wolters
- Institute of Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149 Münster, Germany; (M.A.); (M.P.); (C.H.W.)
- Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, 48149 Münster, Germany
| | - Sampsa Pursiainen
- Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Hervanta Campus, P.O. Box 1001, 33014 Tampere, Finland;
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Rezaei A, Koulouri A, Pursiainen S. Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth. Brain Topogr 2020; 33:161-175. [PMID: 32076899 PMCID: PMC7066097 DOI: 10.1007/s10548-020-00755-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 02/04/2020] [Indexed: 11/28/2022]
Abstract
We focus on electro-/magnetoencephalography imaging of the neural activity and, in particular, finding a robust estimate for the primary current distribution via the hierarchical Bayesian model (HBM). Our aim is to develop a reasonably fast maximum a posteriori (MAP) estimation technique which would be applicable for both superficial and deep areas without specific a priori knowledge of the number or location of the activity. To enable source distinguishability for any depth, we introduce a randomized multiresolution scanning (RAMUS) approach in which the MAP estimate of the brain activity is varied during the reconstruction process. RAMUS aims to provide a robust and accurate imaging outcome for the whole brain, while maintaining the computational cost on an appropriate level. The inverse gamma (IG) distribution is applied as the primary hyperprior in order to achieve an optimal performance for the deep part of the brain. In this proof-of-the-concept study, we consider the detection of simultaneous thalamic and somatosensory activity via numerically simulated data modeling the 14-20 ms post-stimulus somatosensory evoked potential and field response to electrical wrist stimulation. Both a spherical and realistic model are utilized to analyze the source reconstruction discrepancies. In the numerically examined case, RAMUS was observed to enhance the visibility of deep components and also marginalizing the random effects of the discretization and optimization without a remarkable computation cost. A robust and accurate MAP estimate for the primary current density was obtained in both superficial and deep parts of the brain.
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Affiliation(s)
- A Rezaei
- Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33101, Tampere, Finland.
| | - A Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33101, Tampere, Finland
| | - S Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, P.O. Box 692, 33101, Tampere, Finland
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19
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Antonakakis M, Schrader S, Wollbrink A, Oostenveld R, Rampp S, Haueisen J, Wolters CH. The effect of stimulation type, head modeling, and combined EEG and MEG on the source reconstruction of the somatosensory P20/N20 component. Hum Brain Mapp 2019; 40:5011-5028. [PMID: 31397966 PMCID: PMC6865415 DOI: 10.1002/hbm.24754] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 07/23/2019] [Accepted: 07/28/2019] [Indexed: 11/06/2022] Open
Abstract
Modeling and experimental parameters influence the Electro- (EEG) and Magnetoencephalography (MEG) source analysis of the somatosensory P20/N20 component. In a sensitivity group study, we compare P20/N20 source analysis due to different stimulation type (Electric-Wrist [EW], Braille-Tactile [BT], or Pneumato-Tactile [PT]), measurement modality (combined EEG/MEG - EMEG, EEG, or MEG) and head model (standard or individually skull-conductivity calibrated including brain anisotropic conductivity). Considerable differences between pairs of stimulation types occurred (EW-BT: 8.7 ± 3.3 mm/27.1° ± 16.4°, BT-PT: 9 ± 5 mm/29.9° ± 17.3°, and EW-PT: 9.8 ± 7.4 mm/15.9° ± 16.5° and 75% strength reduction of BT or PT when compared to EW) regardless of the head model used. EMEG has nearly no localization differences to MEG, but large ones to EEG (16.1 ± 4.9 mm), while source orientation differences are non-negligible to both EEG (14° ± 3.7°) and MEG (12.5° ± 10.9°). Our calibration results show a considerable inter-subject variability (3.1-14 mS/m) for skull conductivity. The comparison due to different head model show localization differences smaller for EMEG (EW: 3.4 ± 2.4 mm, BT: 3.7 ± 3.4 mm, and PT: 5.9 ± 6.8 mm) than for EEG (EW: 8.6 ± 8.3 mm, BT: 11.8 ± 6.2 mm, and PT: 10.5 ± 5.3 mm), while source orientation differences for EMEG (EW: 15.4° ± 6.3°, BT: 25.7° ± 15.2° and PT: 14° ± 11.5°) and EEG (EW: 14.6° ± 9.5°, BT: 16.3° ± 11.1° and PT: 12.9° ± 8.9°) are in the same range. Our results show that stimulation type, modality and head modeling all have a non-negligible influence on the source reconstruction of the P20/N20 component. The complementary information of both modalities in EMEG can be exploited on the basis of detailed and individualized head models.
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Affiliation(s)
- Marios Antonakakis
- Institute for Biomagnetism and Biosignalanalysis, University of Muenster, Muenster, Germany
| | - Sophie Schrader
- Institute for Biomagnetism and Biosignalanalysis, University of Muenster, Muenster, Germany
| | - Andreas Wollbrink
- Institute for Biomagnetism and Biosignalanalysis, University of Muenster, Muenster, Germany
| | - Robert Oostenveld
- Donders Institute, Radboud University, Nijmegen, Netherlands.,Karolinska Institute, Stockholm, Sweden
| | - Stefan Rampp
- Department of Neurosurgery, University Hospital Erlangen, Erlangen, Germany
| | - Jens Haueisen
- Institute for Biomedical Engineering and Informatics, Technical University of Ilmenau, Ilmenau, Germany
| | - Carsten H Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Muenster, Muenster, Germany.,Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
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20
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Vorwerk J, Aydin Ü, Wolters CH, Butson CR. Influence of Head Tissue Conductivity Uncertainties on EEG Dipole Reconstruction. Front Neurosci 2019; 13:531. [PMID: 31231178 PMCID: PMC6558618 DOI: 10.3389/fnins.2019.00531] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Accepted: 05/08/2019] [Indexed: 11/28/2022] Open
Abstract
Reliable EEG source analysis depends on sufficiently detailed and accurate head models. In this study, we investigate how uncertainties inherent to the experimentally determined conductivity values of the different conductive compartments influence the results of EEG source analysis. In a single source scenario, the superficial and focal somatosensory P20/N20 component, we analyze the influence of varying conductivities on dipole reconstructions using a generalized polynomial chaos (gPC) approach. We find that in particular the conductivity uncertainties for skin and skull have a significant influence on the EEG inverse solution, leading to variations in source localization by several centimeters. The conductivity uncertainties for gray and white matter were found to have little influence on the source localization, but a strong influence on the strength and orientation of the reconstructed source, respectively. As the CSF conductivity is most accurately determined of all conductivities in a realistic head model, CSF conductivity uncertainties had a negligible influence on the source reconstruction. This small uncertainty is a further benefit of distinguishing the CSF in realistic volume conductor models.
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Affiliation(s)
- Johannes Vorwerk
- Scientific Computing & Imaging (SCI) Institute, University of Utah, Salt Lake City, UT, United States
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany
- Institute of Electrical and Biomedical Engineering, UMIT - University for Health Sciences, Medical Informatics and Technology, Hall in Tirol, Austria
| | - Ümit Aydin
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM Centre, Concordia University, Montreal, QC, Canada
| | - Carsten H. Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany
- Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster, Germany
| | - Christopher R. Butson
- Scientific Computing & Imaging (SCI) Institute, University of Utah, Salt Lake City, UT, United States
- Departments of Biomedical Engineering, Neurology, and Psychiatry, University of Utah, Salt Lake City, UT, United States
- Department of Neurosurgery, Clinical Neurosciences Center, University of Utah, Salt Lake City, UT, United States
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Tremblay S, Rogasch NC, Premoli I, Blumberger DM, Casarotto S, Chen R, Di Lazzaro V, Farzan F, Ferrarelli F, Fitzgerald PB, Hui J, Ilmoniemi RJ, Kimiskidis VK, Kugiumtzis D, Lioumis P, Pascual-Leone A, Pellicciari MC, Rajji T, Thut G, Zomorrodi R, Ziemann U, Daskalakis ZJ. Clinical utility and prospective of TMS–EEG. Clin Neurophysiol 2019; 130:802-844. [DOI: 10.1016/j.clinph.2019.01.001] [Citation(s) in RCA: 117] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 01/07/2019] [Accepted: 01/08/2019] [Indexed: 12/15/2022]
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22
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Rimpiläinen V, Koulouri A, Lucka F, Kaipio JP, Wolters CH. Improved EEG source localization with Bayesian uncertainty modelling of unknown skull conductivity. Neuroimage 2018; 188:252-260. [PMID: 30529398 DOI: 10.1016/j.neuroimage.2018.11.058] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Accepted: 11/30/2018] [Indexed: 10/27/2022] Open
Abstract
Electroencephalography (EEG) source imaging is an ill-posed inverse problem that requires accurate conductivity modelling of the head tissues, especially the skull. Unfortunately, the conductivity values are difficult to determine in vivo. In this paper, we show that the exact knowledge of the skull conductivity is not always necessary when the Bayesian approximation error (BAE) approach is exploited. In BAE, we first postulate a probability distribution for the skull conductivity that describes our (lack of) knowledge on its value, and model the effects of this uncertainty on EEG recordings with the help of an additive error term in the observation model. Before the Bayesian inference, the likelihood is marginalized over this error term. Thus, in the inversion we estimate only our primary unknown, the source distribution. We quantified the improvements in the source localization when the proposed Bayesian modelling was used in the presence of different skull conductivity errors and levels of measurement noise. Based on the results, BAE was able to improve the source localization accuracy, particularly when the unknown (true) skull conductivity was much lower than the expected standard conductivity value. The source locations that gained the highest improvements were shallow and originally exhibited the largest localization errors. In our case study, the benefits of BAE became negligible when the signal-to-noise ratio dropped to 20 dB.
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Affiliation(s)
- Ville Rimpiläinen
- Department of Physics, University of Bath, Claverton Down, Bath, BA2 7AY, United Kingdom; Institute for Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149, Münster, Germany.
| | - Alexandra Koulouri
- Laboratory of Mathematics, Tampere University of Technology, P. O. Box 692, 33101, Tampere, Finland; Department of Physics, Aristotle University of Thessaloniki, Thessaloniki, 541 24, Greece
| | - Felix Lucka
- Computational Imaging, Centrum Wiskunde & Informatica, Science Park 123, 1098 XG, Amsterdam, the Netherlands; Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, United Kingdom
| | - Jari P Kaipio
- Department of Mathematics, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand; Department of Applied Physics, University of Eastern Finland, FI-90211, Kuopio, Finland
| | - Carsten H Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Malmedyweg 15, D-48149, Münster, Germany
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Muñoz-Gutiérrez PA, Giraldo E, Bueno-López M, Molinas M. Localization of Active Brain Sources From EEG Signals Using Empirical Mode Decomposition: A Comparative Study. Front Integr Neurosci 2018; 12:55. [PMID: 30450041 PMCID: PMC6224487 DOI: 10.3389/fnint.2018.00055] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 10/16/2018] [Indexed: 11/21/2022] Open
Abstract
The localization of active brain sources from Electroencephalogram (EEG) is a useful method in clinical applications, such as the study of localized epilepsy, evoked-related-potentials, and attention deficit/hyperactivity disorder. The distributed-source model is a common method to estimate neural activity in the brain. The location and amplitude of each active source are estimated by solving the inverse problem by regularization or using Bayesian methods with spatio-temporal constraints. Frequency and spatio-temporal constraints improve the quality of the reconstructed neural activity. However, separation into frequency bands is beneficial when the relevant information is in specific sub-bands. We improved frequency-band identification and preserved good temporal resolution using EEG pre-processing techniques with good frequency band separation and temporal resolution properties. The identified frequency bands were included as constraints in the solution of the inverse problem by decomposing the EEG signals into frequency bands through various methods that offer good frequency and temporal resolution, such as empirical mode decomposition (EMD) and wavelet transform (WT). We present a comparative analysis of the accuracy of brain-source reconstruction using these techniques. The accuracy of the spatial reconstruction was assessed using the Wasserstein metric for real and simulated signals. We approached the mode-mixing problem, inherent to EMD, by exploring three variants of EMD: masking EMD, Ensemble-EMD (EEMD), and multivariate EMD (MEMD). The results of the spatio-temporal brain source reconstruction using these techniques show that masking EMD and MEMD can largely mitigate the mode-mixing problem and achieve a good spatio-temporal reconstruction of the active sources. Masking EMD and EEMD achieved better reconstruction than standard EMD, Multiple Sparse Priors, or wavelet packet decomposition when EMD was used as a pre-processing tool for the spatial reconstruction (averaged over time) of the brain sources. The spatial resolution obtained using all three EMD variants was substantially better than the use of EMD alone, as the mode-mixing problem was mitigated, particularly with masking EMD and EEMD. These findings encourage further exploration into the use of EMD-based pre-processing, the mode-mixing problem, and its impact on the accuracy of brain source activity reconstruction.
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Affiliation(s)
- Pablo Andrés Muñoz-Gutiérrez
- Electronic Instrumentation Technology, Universidad del Quindío, Armenia, Colombia.,Department of Electrical Engineering, Universidad Tecnológica de Pereira, Pereira, Colombia
| | - Eduardo Giraldo
- Department of Electrical Engineering, Universidad Tecnológica de Pereira, Pereira, Colombia
| | | | - Marta Molinas
- Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway
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24
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Variation sparse source imaging based on conditional mean for electromagnetic extended sources. Neurocomputing 2018. [DOI: 10.1016/j.neucom.2018.06.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Iordanov T, Bornfleth H, Wolters CH, Pasheva V, Venkov G, Lanfer B, Scherg M, Scherg T. LORETA With Cortical Constraint: Choosing an Adequate Surface Laplacian Operator. Front Neurosci 2018; 12:746. [PMID: 30425613 PMCID: PMC6218614 DOI: 10.3389/fnins.2018.00746] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 09/28/2018] [Indexed: 11/13/2022] Open
Abstract
Low resolution electromagnetic tomography (LORETA) is a well-known method for the solution of the l2-based minimization problem for EEG/MEG source reconstruction. LORETA with a volume-based source space is widely used and much effort has been invested in the theory and the application of the method in an experimental context. However, it is especially interesting to use anatomical prior knowledge and constrain the LORETA's solution to the cortical surface. This strongly reduces the number of unknowns in the inverse approach. Unlike the Laplace operator in the volume case with a rectangular and regular grid, the mesh is triangulated and highly irregular in the surface case. Thus, it is not trivial to choose or construct a Laplace operator (termed Laplace-Beltrami operator when applied to surfaces) that has the desired properties and takes into account the geometry of the mesh. In this paper, the basic methodology behind cortical LORETA is discussed and the method is applied for source reconstruction of simulated data using different Laplace-Beltrami operators in the smoothing term. The results achieved with the different operators are compared with respect to their accuracy using various measures. Conclusions about the choice of an appropriate operator are deduced from the results.
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Affiliation(s)
| | | | - Carsten H. Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany
| | - Vesela Pasheva
- Faculty of Applied Mathematics and Informatics, Technical University of Sofia, Sofia, Bulgaria
| | - Georgi Venkov
- Faculty of Applied Mathematics and Informatics, Technical University of Sofia, Sofia, Bulgaria
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Miinalainen T, Rezaei A, Us D, Nüßing A, Engwer C, Wolters CH, Pursiainen S. A realistic, accurate and fast source modeling approach for the EEG forward problem. Neuroimage 2018; 184:56-67. [PMID: 30165251 DOI: 10.1016/j.neuroimage.2018.08.054] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 08/09/2018] [Accepted: 08/22/2018] [Indexed: 11/20/2022] Open
Abstract
The aim of this paper is to advance electroencephalography (EEG) source analysis using finite element method (FEM) head volume conductor models that go beyond the standard three compartment (skin, skull, brain) approach and take brain tissue inhomogeneity (gray and white matter and cerebrospinal fluid) into account. The new approach should enable accurate EEG forward modeling in the thin human cortical structures and, more specifically, in the especially thin cortices in children brain research or in pathological applications. The source model should thus be focal enough to be usable in the thin cortices, but should on the other side be more realistic than the current standard mathematical point dipole. Furthermore, it should be numerically accurate and computationally fast. We propose to achieve the best balance between these demands with a current preserving (divergence conforming) dipolar source model. We develop and investigate a varying number of current preserving source basis elements n (n=1,…,n=5). For validation, we conducted numerical experiments within a multi-layered spherical domain, where an analytical solution exists. We show that the accuracy increases along with the number of basis elements, while focality decreases. The results suggest that the best balance between accuracy and focality in thin cortices is achieved with n=4 (or in extreme cases even n=3) basis functions, while in thicker cortices n=5 is recommended to obtain the highest accuracy. We also compare the current preserving approach to two further FEM source modeling techniques, namely partial integration and St. Venant, and show that the best current preserving source model outperforms the competing methods with regard to overall balance. For all tested approaches, FEM transfer matrices enable high computational speed. We implemented the new EEG forward modeling approaches into the open source duneuro library for forward modeling in bioelectromagnetism to enable its broader use by the brain research community. This library is build upon the DUNE framework for parallel finite elements simulations and integrates with high-level toolboxes like FieldTrip. Additionally, an inversion test has been implemented using the realistic head model to demonstrate and compare the differences between the aforementioned source models.
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Affiliation(s)
- Tuuli Miinalainen
- Laboratory of Mathematics, Tampere University of Technology, P.O. Box 692, 33101, Tampere, Finland; Institute for Biomagnetism and Biosignalanalysis, University of Münster, Germany, Malmedyweg 15, D-48149, Münster, Germany; Institute for Computational and Applied Mathematics, University of Münster, Germany, Einsteinstrasse 62, D-48149, Münster, Germany; Department of Applied Physics, University of Eastern Finland, P.O.Box 1627, FI-70211 Kuopio, Finland
| | - Atena Rezaei
- Laboratory of Mathematics, Tampere University of Technology, P.O. Box 692, 33101, Tampere, Finland.
| | - Defne Us
- Laboratory of Mathematics, Tampere University of Technology, P.O. Box 692, 33101, Tampere, Finland; Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland, P.O. Box 553, 33101, Tampere, Finland
| | - Andreas Nüßing
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Germany, Malmedyweg 15, D-48149, Münster, Germany; Institute for Computational and Applied Mathematics, University of Münster, Germany, Einsteinstrasse 62, D-48149, Münster, Germany
| | - Christian Engwer
- Institute for Computational and Applied Mathematics, University of Münster, Germany, Einsteinstrasse 62, D-48149, Münster, Germany
| | - Carsten H Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Germany, Malmedyweg 15, D-48149, Münster, Germany
| | - Sampsa Pursiainen
- Laboratory of Mathematics, Tampere University of Technology, P.O. Box 692, 33101, Tampere, Finland
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Brain Activity Mapping from MEG Data via a Hierarchical Bayesian Algorithm with Automatic Depth Weighting. Brain Topogr 2018; 32:363-393. [PMID: 30121834 DOI: 10.1007/s10548-018-0670-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Accepted: 08/03/2018] [Indexed: 10/28/2022]
Abstract
A recently proposed iterated alternating sequential (IAS) MEG inverse solver algorithm, based on the coupling of a hierarchical Bayesian model with computationally efficient Krylov subspace linear solver, has been shown to perform well for both superficial and deep brain sources. However, a systematic study of its ability to correctly identify active brain regions is still missing. We propose novel statistical protocols to quantify the performance of MEG inverse solvers, focusing in particular on how their accuracy and precision at identifying active brain regions. We use these protocols for a systematic study of the performance of the IAS MEG inverse solver, comparing it with three standard inversion methods, wMNE, dSPM, and sLORETA. To avoid the bias of anecdotal tests towards a particular algorithm, the proposed protocols are Monte Carlo sampling based, generating an ensemble of activity patches in each brain region identified in a given atlas. The performance in correctly identifying the active areas is measured by how much, on average, the reconstructed activity is concentrated in the brain region of the simulated active patch. The analysis is based on Bayes factors, interpreting the estimated current activity as data for testing the hypothesis that the active brain region is correctly identified, versus the hypothesis of any erroneous attribution. The methodology allows the presence of a single or several simultaneous activity regions, without assuming that the number of active regions is known. The testing protocols suggest that the IAS solver performs well with both with cortical and subcortical activity estimation.
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28
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Kaskie RE, Ferrarelli F. Investigating the neurobiology of schizophrenia and other major psychiatric disorders with Transcranial Magnetic Stimulation. Schizophr Res 2018; 192:30-38. [PMID: 28478887 DOI: 10.1016/j.schres.2017.04.045] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Revised: 04/24/2017] [Accepted: 04/26/2017] [Indexed: 11/16/2022]
Abstract
Characterizing the neurobiology of schizophrenia and other major psychiatric disorders is one of the main challenges of the current research in psychiatry. The availability of Transcranial Magnetic Stimulation (TMS) allows to directly probe virtually any cortical areas, thus providing a unique way to assess the neurophysiological properties of cortical neurons. This article presents a review of studies employing TMS in combination with Motor Evoked Potentials (TMS/MEPs) and high density Electroencephalogram (TMS/hd-EEG) in schizophrenia and other major psychiatric disorders. Studies were identified by conducting a PubMed search using the following search item: "transcranial magnetic stimulation and (Schizophrenia or OCD or MDD or ADHD)". Studies that utilized TMS/MEP and/or TMS/hd-EEG measures to characterize cortical excitability, inhibition, oscillatory activity, and/or connectivity in psychiatric patients were selected. Across disorders, patients displayed a pattern of reduced cortical inhibition, and to a lesser extent increased excitability, in the motor cortex, which was most consistently established in Schizophrenia. Furthermore, psychiatric patients showed abnormalities in a number of TMS-evoked EEG oscillations, which was most prominent in the prefrontal cortex of Schizophrenia relative to healthy comparison subjects. Overall, results from this review point to significant impairments in cortical excitability, inhibition, and oscillatory activity, especially in frontal areas, in several major psychiatric disorders. Building on these findings, future studies employing TMS-based experimental paradigms may help elucidating the neurobiology of these psychiatric disorders, and may assess the contribution of TMS-related measures in monitoring and possibly maximizing the effectiveness of treatment interventions in psychiatric populations.
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Neugebauer F, Möddel G, Rampp S, Burger M, Wolters CH. The Effect of Head Model Simplification on Beamformer Source Localization. Front Neurosci 2017; 11:625. [PMID: 29209157 PMCID: PMC5701642 DOI: 10.3389/fnins.2017.00625] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 10/26/2017] [Indexed: 11/13/2022] Open
Abstract
Beamformers are a widely-used tool in brain analysis with magnetoencephalography (MEG) and electroencephalography (EEG). For the construction of the beamformer filters realistic head volume conductor modeling is necessary for accurately computing the EEG and MEG leadfields, i.e., for solving the EEG and MEG forward problem. In this work, we investigate the influence of including realistic head tissue compartments into a finite element method (FEM) model on the beamformer's localization ability. Specifically, we investigate the effect of including cerebrospinal fluid, gray matter, and white matter distinction, as well as segmenting the skull bone into compacta and spongiosa, and modeling white matter anisotropy. We simulate an interictal epileptic measurement with white sensor noise. Beamformer filters are constructed with unit gain, unit array gain, and unit noise gain constraint. Beamformer source positions are determined by evaluating power and excess sample kurtosis (g2) of the source-waveforms at all source space nodes. For both modalities, we see a strong effect of modeling the cerebrospinal fluid and white and gray matter. Depending on the source position, both effects can each be in the magnitude of centimeters, rendering their modeling necessary for successful localization. Precise skull modeling mainly effected the EEG up to a few millimeters, while both modalities could profit from modeling white matter anisotropy to a smaller extent of 5-10 mm. The unit noise gain or neural activity index beamformer behaves similarly to the array gain beamformer when noise strength is sufficiently high. Variance localization seems more robust against modeling errors than kurtosis.
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Affiliation(s)
- Frank Neugebauer
- Institute for Biomagnetism und Biosignalanalysis, University of Münster, Münster, Germany
| | - Gabriel Möddel
- Department of Sleep Medicine and Neuromuscular Disorders, Epilepsy Center Münster-Osnabrück, University of Münster, Münster, Germany
| | - Stefan Rampp
- Department of Neurosurgery, University Hospital Erlangen, Erlangen, Germany
| | - Martin Burger
- Institute for Computational and Applied Mathematics, University of Münster, Münster, Germany
| | - Carsten H. Wolters
- Institute for Biomagnetism und Biosignalanalysis, University of Münster, Münster, Germany
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30
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Aydin Ü, Rampp S, Wollbrink A, Kugel H, Cho JH, Knösche TR, Grova C, Wellmer J, Wolters CH. Zoomed MRI Guided by Combined EEG/MEG Source Analysis: A Multimodal Approach for Optimizing Presurgical Epilepsy Work-up and its Application in a Multi-focal Epilepsy Patient Case Study. Brain Topogr 2017; 30:417-433. [PMID: 28510905 PMCID: PMC5495874 DOI: 10.1007/s10548-017-0568-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Accepted: 04/25/2017] [Indexed: 10/25/2022]
Abstract
In recent years, the use of source analysis based on electroencephalography (EEG) and magnetoencephalography (MEG) has gained considerable attention in presurgical epilepsy diagnosis. However, in many cases the source analysis alone is not used to tailor surgery unless the findings are confirmed by lesions, such as, e.g., cortical malformations in MRI. For many patients, the histology of tissue resected from MRI negative epilepsy shows small lesions, which indicates the need for more sensitive MR sequences. In this paper, we describe a technique to maximize the synergy between combined EEG/MEG (EMEG) source analysis and high resolution MRI. The procedure has three main steps: (1) construction of a detailed and calibrated finite element head model that considers the variation of individual skull conductivities and white matter anisotropy, (2) EMEG source analysis performed on averaged interictal epileptic discharges (IED), (3) high resolution (0.5 mm) zoomed MR imaging, limited to small areas centered at the EMEG source locations. The proposed new diagnosis procedure was then applied in a particularly challenging case of an epilepsy patient: EMEG analysis at the peak of the IED coincided with a right frontal focal cortical dysplasia (FCD), which had been detected at standard 1 mm resolution MRI. Of higher interest, zoomed MR imaging (applying parallel transmission, 'ZOOMit') guided by EMEG at the spike onset revealed a second, fairly subtle, FCD in the left fronto-central region. The evaluation revealed that this second FCD, which had not been detectable with standard 1 mm resolution, was the trigger of the seizures.
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Affiliation(s)
- Ü Aydin
- Institute for Biomagnetism und Biosignalanalysis, University of Münster, Malmedyweg 15, 48149, Münster, Germany. .,Multimodal Functional Imaging Lab, Department of Physics and PERFORM Centre, Concordia University, Montreal, Quebec, Canada.
| | - S Rampp
- Department of Neurosurgery, University Hospital Erlangen, Erlangen, Germany
| | - A Wollbrink
- Institute for Biomagnetism und Biosignalanalysis, University of Münster, Malmedyweg 15, 48149, Münster, Germany
| | - H Kugel
- Department of Clinical Radiology, University Hospital Münster, Münster, Germany
| | - J -H Cho
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - T R Knösche
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - C Grova
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM Centre, Concordia University, Montreal, Quebec, Canada.,Multimodal Functional Imaging Lab, Department of Biomedical Engineering, McGill University, Montreal, Quebec, Canada.,Department of Neurology and Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada
| | - J Wellmer
- Ruhr-Epileptology, Department of Neurology, University Hospital Knappschaftskrankenhaus Bochum, Bochum, Germany
| | - C H Wolters
- Institute for Biomagnetism und Biosignalanalysis, University of Münster, Malmedyweg 15, 48149, Münster, Germany
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31
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Martinez-Vargas JD, Strobbe G, Vonck K, van Mierlo P, Castellanos-Dominguez G. Improved Localization of Seizure Onset Zones Using Spatiotemporal Constraints and Time-Varying Source Connectivity. Front Neurosci 2017; 11:156. [PMID: 28428738 PMCID: PMC5382162 DOI: 10.3389/fnins.2017.00156] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Accepted: 03/10/2017] [Indexed: 11/30/2022] Open
Abstract
Presurgical evaluation of brain neural activity is commonly carried out in refractory epilepsy patients to delineate as accurately as possible the seizure onset zone (SOZ) before epilepsy surgery. In practice, any subjective interpretation of electroencephalographic (EEG) recordings is hindered mainly because of the highly stochastic behavior of the epileptic activity. We propose a new method for dynamic source connectivity analysis that aims to accurately localize the seizure onset zones by explicitly including temporal, spectral, and spatial information of the brain neural activity extracted from EEG recordings. In particular, we encode the source nonstationarities in three critical stages of processing: Inverse problem solution, estimation of the time courses extracted from the regions of interest, and connectivity assessment. With the aim to correctly encode all temporal dynamics of the seizure-related neural network, a directed functional connectivity measure is employed to quantify the information flow variations over the time window of interest. Obtained results on simulated and real EEG data confirm that the proposed approach improves the accuracy of SOZ localization.
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Affiliation(s)
- Juan D Martinez-Vargas
- Signal Processing and Recognition Group, Universidad Nacional de ColombiaManizales, Colombia
| | - Gregor Strobbe
- Medical Image and Signal Processing Group, iMinds Medical IT Department, Ghent UniversityGhent, Belgium
| | - Kristl Vonck
- Laboratory for Clinical and Experimental Neurophysiology, Neurobiology and Neuropsychology, Ghent University HospitalGhent, Belgium
| | - Pieter van Mierlo
- Medical Image and Signal Processing Group, iMinds Medical IT Department, Ghent UniversityGhent, Belgium
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32
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Cam SL, Ranta R, Caune V, Korats G, Koessler L, Maillard L, Louis-Dorr V. SEEG dipole source localization based on an empirical Bayesian approach taking into account forward model uncertainties. Neuroimage 2017; 153:1-15. [PMID: 28323161 DOI: 10.1016/j.neuroimage.2017.03.030] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Revised: 01/18/2017] [Accepted: 03/14/2017] [Indexed: 11/24/2022] Open
Abstract
Electromagnetic brain source localization consists in the inversion of a forward model based on a limited number of potential measurements. A wide range of methods has been developed to regularize this severely ill-posed problem and to reduce the solution space, imposing spatial smoothness, anatomical constraint or sparsity of the activated source map. This last criteria, based on physiological assumptions stating that in some particular events (e.g., epileptic spikes, evoked potential) few focal area of the brain are simultaneously actives, has gained more and more interest. Bayesian approaches have the ability to provide sparse solutions under adequate parametrization, and bring a convenient framework for the introduction of priors in the form of probabilistic density functions. However the quality of the forward model is rarely questioned while this parameter has undoubtedly a great influence on the solution. Its construction suffers from numerous approximation and uncertainties, even when using realistic numerical models. In addition, it often encodes a coarse sampling of the continuous solution space due to the computational burden its inversion implies. In this work we propose an empirical Bayesian approach to take into account the uncertainties of the forward model by allowing constrained variations around a prior physical model, in the particular context of SEEG measurements. We demonstrate on simulations that the method enhance the accuracy of the source time-course estimation as well as the sparsity of the resulting source map. Results on real signals prove the applicability of the method in real contexts.
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Affiliation(s)
- S Le Cam
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France.
| | - R Ranta
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France
| | - V Caune
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France
| | - G Korats
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France; Ventspils University College, 101 Inzenieruiela, LV-3601 Ventspils, Latvia
| | - L Koessler
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France
| | - L Maillard
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France; CHU Nancy, Neurology Department, 54000 Nancy, France
| | - V Louis-Dorr
- Université de Lorraine, CRAN, UMR 7039, 54500 Vandœuvre-lès-Nancy, France; CNRS, CRAN, UMR, 7039, France
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33
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Hansen ST, Hansen LK. Spatio-temporal reconstruction of brain dynamics from EEG with a Markov prior. Neuroimage 2016; 148:274-283. [PMID: 27986607 DOI: 10.1016/j.neuroimage.2016.12.030] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Revised: 11/11/2016] [Accepted: 12/11/2016] [Indexed: 11/17/2022] Open
Abstract
Electroencephalography (EEG) can capture brain dynamics in high temporal resolution. By projecting the scalp EEG signal back to its origin in the brain also high spatial resolution can be achieved. Source localized EEG therefore has potential to be a very powerful tool for understanding the functional dynamics of the brain. Solving the inverse problem of EEG is however highly ill-posed as there are many more potential locations of the EEG generators than EEG measurement points. Several well-known properties of brain dynamics can be exploited to alleviate this problem. More short ranging connections exist in the brain than long ranging, arguing for spatially focal sources. Additionally, recent work (Delorme et al., 2012) argues that EEG can be decomposed into components having sparse source distributions. On the temporal side both short and long term stationarity of brain activation are seen. We summarize these insights in an inverse solver, the so-called "Variational Garrote" (Kappen and Gómez, 2013). Using a Markov prior we can incorporate flexible degrees of temporal stationarity. Through spatial basis functions spatially smooth distributions are obtained. Sparsity of these are inherent to the Variational Garrote solver. We name our method the MarkoVG and demonstrate its ability to adapt to the temporal smoothness and spatial sparsity in simulated EEG data. Finally a benchmark EEG dataset is used to demonstrate MarkoVG's ability to recover non-stationary brain dynamics.
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Affiliation(s)
- Sofie Therese Hansen
- Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Richard Petersens Plads, Building 324, DK-2800 Kgs. Lyngby, Denmark.
| | - Lars Kai Hansen
- Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Richard Petersens Plads, Building 324, DK-2800 Kgs. Lyngby, Denmark.
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34
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Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data. Neuroimage 2016; 143:175-195. [DOI: 10.1016/j.neuroimage.2016.08.044] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Revised: 08/18/2016] [Accepted: 08/20/2016] [Indexed: 11/23/2022] Open
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35
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Luke R, De Vos A, Wouters J. Source analysis of auditory steady-state responses in acoustic and electric hearing. Neuroimage 2016; 147:568-576. [PMID: 27894891 DOI: 10.1016/j.neuroimage.2016.11.023] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Revised: 10/06/2016] [Accepted: 11/05/2016] [Indexed: 11/17/2022] Open
Abstract
Speech is a complex signal containing a broad variety of acoustic information. For accurate speech reception, the listener must perceive modulations over a range of envelope frequencies. Perception of these modulations is particularly important for cochlear implant (CI) users, as all commercial devices use envelope coding strategies. Prolonged deafness affects the auditory pathway. However, little is known of how cochlear implantation affects the neural processing of modulated stimuli. This study investigates and contrasts the neural processing of envelope rate modulated signals in acoustic and CI listeners. Auditory steady-state responses (ASSRs) are used to study the neural processing of amplitude modulated (AM) signals. A beamforming technique is applied to determine the increase in neural activity relative to a control condition, with particular attention paid to defining the accuracy and precision of this technique relative to other tomographies. In a cohort of 44 acoustic listeners, the location, activity and hemispheric lateralisation of ASSRs is characterised while systematically varying the modulation rate (4, 10, 20, 40 and 80Hz) and stimulation ear (right, left and bilateral). We demonstrate a complex pattern of laterality depending on both modulation rate and stimulation ear that is consistent with, and extends, existing literature. We present a novel extension to the beamforming method which facilitates source analysis of electrically evoked auditory steady-state responses (EASSRs). In a cohort of 5 right implanted unilateral CI users, the neural activity is determined for the 40Hz rate and compared to the acoustic cohort. Results indicate that CI users activate typical thalamic locations for 40Hz stimuli. However, complementary to studies of transient stimuli, the CI population has atypical hemispheric laterality, preferentially activating the contralateral hemisphere.
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Affiliation(s)
- Robert Luke
- Research Group Experimental ORL, Department of Neurosciences, KU Leuven - University of Leuven, Belgium
| | - Astrid De Vos
- Research Group Experimental ORL, Department of Neurosciences, KU Leuven - University of Leuven, Belgium; Parenting and Special Education Research Unit, Faculty of Psychology and Educational Sciences, KU Leuven - University of Leuven, Belgium
| | - Jan Wouters
- Research Group Experimental ORL, Department of Neurosciences, KU Leuven - University of Leuven, Belgium
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36
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Pursiainen S, Lew S, Wolters CH. Forward and inverse effects of the complete electrode model in neonatal EEG. J Neurophysiol 2016; 117:876-884. [PMID: 27852731 PMCID: PMC5338621 DOI: 10.1152/jn.00427.2016] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 11/10/2016] [Indexed: 11/24/2022] Open
Abstract
The effect of the complete electrode model on electroencephalography forward and inverse computations is explored. A realistic neonatal head model, including a skull structure with fontanels and sutures, is used. The electrode and skull modeling differences are analyzed and compared with each other. The results suggest that the complete electrode model can be considered as an integral part of the outer head model. To achieve optimal source localization results, accurate electrode modeling might be necessary. This paper investigates finite element method-based modeling in the context of neonatal electroencephalography (EEG). In particular, the focus lies on electrode boundary conditions. We compare the complete electrode model (CEM) with the point electrode model (PEM), which is the current standard in EEG. In the CEM, the voltage experienced by an electrode is modeled more realistically as the integral average of the potential distribution over its contact surface, whereas the PEM relies on a point value. Consequently, the CEM takes into account the subelectrode shunting currents, which are absent in the PEM. In this study, we aim to find out how the electrode voltage predicted by these two models differ, if standard size electrodes are attached to a head of a neonate. Additionally, we study voltages and voltage variation on electrode surfaces with two source locations: 1) next to the C6 electrode and 2) directly under the Fz electrode and the frontal fontanel. A realistic model of a neonatal head, including a skull with fontanels and sutures, is used. Based on the results, the forward simulation differences between CEM and PEM are in general small, but significant outliers can occur in the vicinity of the electrodes. The CEM can be considered as an integral part of the outer head model. The outcome of this study helps understanding volume conduction of neonatal EEG, since it enlightens the role of advanced skull and electrode modeling in forward and inverse computations. NEW & NOTEWORTHY The effect of the complete electrode model on electroencephalography forward and inverse computations is explored. A realistic neonatal head model, including a skull structure with fontanels and sutures, is used. The electrode and skull modeling differences are analyzed and compared with each other. The results suggest that the complete electrode model can be considered as an integral part of the outer head model. To achieve optimal source localization results, accurate electrode modeling might be necessary.
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Affiliation(s)
- S Pursiainen
- Department of Mathematics, Tampere University of Technology, Tampere, Finland;
| | - S Lew
- Newborn Medicine in the Boston Children's Hospital, Boston, Massachusetts.,Department of Engineering, Olivet Nazarene University, Bourbonnais, Illinois; and
| | - C H Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster, Germany
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37
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Strohmeier D, Bekhti Y, Haueisen J, Gramfort A. The Iterative Reweighted Mixed-Norm Estimate for Spatio-Temporal MEG/EEG Source Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:2218-2228. [PMID: 27093548 PMCID: PMC5533305 DOI: 10.1109/tmi.2016.2553445] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Source imaging based on magnetoencephalography (MEG) and electroencephalography (EEG) allows for the non-invasive analysis of brain activity with high temporal and good spatial resolution. As the bioelectromagnetic inverse problem is ill-posed, constraints are required. For the analysis of evoked brain activity, spatial sparsity of the neuronal activation is a common assumption. It is often taken into account using convex constraints based on the l1-norm. The resulting source estimates are however biased in amplitude and often suboptimal in terms of source selection due to high correlations in the forward model. In this work, we demonstrate that an inverse solver based on a block-separable penalty with a Frobenius norm per block and a l0.5-quasinorm over blocks addresses both of these issues. For solving the resulting non-convex optimization problem, we propose the iterative reweighted Mixed Norm Estimate (irMxNE), an optimization scheme based on iterative reweighted convex surrogate optimization problems, which are solved efficiently using a block coordinate descent scheme and an active set strategy. We compare the proposed sparse imaging method to the dSPM and the RAP-MUSIC approach based on two MEG data sets. We provide empirical evidence based on simulations and analysis of MEG data that the proposed method improves on the standard Mixed Norm Estimate (MxNE) in terms of amplitude bias, support recovery, and stability.
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38
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Bruyns-Haylett M, Luo J, Kennerley AJ, Harris S, Boorman L, Milne E, Vautrelle N, Hayashi Y, Whalley BJ, Jones M, Berwick J, Riera J, Zheng Y. The neurogenesis of P1 and N1: A concurrent EEG/LFP study. Neuroimage 2016; 146:575-588. [PMID: 27646129 PMCID: PMC5312787 DOI: 10.1016/j.neuroimage.2016.09.034] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Revised: 08/19/2016] [Accepted: 09/15/2016] [Indexed: 10/29/2022] Open
Abstract
It is generally recognised that event related potentials (ERPs) of electroencephalogram (EEG) primarily reflect summed post-synaptic activity of the local pyramidal neural population(s). However, it is still not understood how the positive and negative deflections (e.g. P1, N1 etc) observed in ERP recordings are related to the underlying excitatory and inhibitory post-synaptic activity. We investigated the neurogenesis of P1 and N1 in ERPs by pharmacologically manipulating inhibitory post-synaptic activity in the somatosensory cortex of rodent, and concurrently recording EEG and local field potentials (LFPs). We found that the P1 wave in the ERP and LFP of the supragranular layers is determined solely by the excitatory post-synaptic activity of the local pyramidal neural population, as is the initial segment of the N1 wave across cortical depth. The later part of the N1 wave was modulated by inhibitory post-synaptic activity, with its peak and the pulse width increasing as inhibition was reduced. These findings suggest that the temporal delay of inhibition with respect to excitation observed in intracellular recordings is also reflected in extracellular field potentials (FPs), resulting in a temporal window during which only excitatory post-synaptic activity and leak channel activity are recorded in the ERP and evoked LFP time series. Based on these findings, we provide clarification on the interpretation of P1 and N1 in terms of the excitatory and inhibitory post-synaptic activities of the local pyramidal neural population(s).
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Affiliation(s)
- Michael Bruyns-Haylett
- School of Systems Engineering, Whiteknights, University of Reading, Reading RG6 7AY, United Kingdom.
| | - Jingjing Luo
- School of Systems Engineering, Whiteknights, University of Reading, Reading RG6 7AY, United Kingdom.
| | - Aneurin J Kennerley
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Sam Harris
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Luke Boorman
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Elizabeth Milne
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Nicolas Vautrelle
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Yurie Hayashi
- School of Systems Engineering, Whiteknights, University of Reading, Reading RG6 7AY, United Kingdom
| | - Benjamin J Whalley
- School of Systems Engineering, Whiteknights, University of Reading, Reading RG6 7AY, United Kingdom
| | - Myles Jones
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Jason Berwick
- Department of Psychology, University of Sheffield, Sheffield S10 2TP, United Kingdom
| | - Jorge Riera
- Department of Biomedical Engineering, Florida International University, Miami, FL 33174, United States of America
| | - Ying Zheng
- School of Systems Engineering, Whiteknights, University of Reading, Reading RG6 7AY, United Kingdom.
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39
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Costa F, Batatia H, Oberlin T, D'Giano C, Tourneret JY. Bayesian EEG source localization using a structured sparsity prior. Neuroimage 2016; 144:142-152. [PMID: 27639353 DOI: 10.1016/j.neuroimage.2016.08.064] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Revised: 07/18/2016] [Accepted: 08/30/2016] [Indexed: 11/26/2022] Open
Abstract
This paper deals with EEG source localization. The aim is to perform spatially coherent focal localization and recover temporal EEG waveforms, which can be useful in certain clinical applications. A new hierarchical Bayesian model is proposed with a multivariate Bernoulli Laplacian structured sparsity prior for brain activity. This distribution approximates a mixed ℓ20 pseudo norm regularization in a Bayesian framework. A partially collapsed Gibbs sampler is proposed to draw samples asymptotically distributed according to the posterior of the proposed Bayesian model. The generated samples are used to estimate the brain activity and the model hyperparameters jointly in an unsupervised framework. Two different kinds of Metropolis-Hastings moves are introduced to accelerate the convergence of the Gibbs sampler. The first move is based on multiple dipole shifts within each MCMC chain, whereas the second exploits proposals associated with different MCMC chains. Experiments with focal synthetic data shows that the proposed algorithm is more robust and has a higher recovery rate than the weighted ℓ21 mixed norm regularization. Using real data, the proposed algorithm finds sources that are spatially coherent with state of the art methods, namely a multiple sparse prior approach and the Champagne algorithm. In addition, the method estimates waveforms showing peaks at meaningful timestamps. This information can be valuable for activity spread characterization.
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Affiliation(s)
- Facundo Costa
- University of Toulouse, INP/ENSEEIHT - IRIT, 2 rue Charles Camichel, BP 7122, 31071 Toulouse Cedex 7, France.
| | - Hadj Batatia
- University of Toulouse, INP/ENSEEIHT - IRIT, 2 rue Charles Camichel, BP 7122, 31071 Toulouse Cedex 7, France
| | - Thomas Oberlin
- University of Toulouse, INP/ENSEEIHT - IRIT, 2 rue Charles Camichel, BP 7122, 31071 Toulouse Cedex 7, France
| | | | - Jean-Yves Tourneret
- University of Toulouse, INP/ENSEEIHT - IRIT, 2 rue Charles Camichel, BP 7122, 31071 Toulouse Cedex 7, France
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Lei X, Wu T, Valdes-Sosa PA. Incorporating priors for EEG source imaging and connectivity analysis. Front Neurosci 2015; 9:284. [PMID: 26347599 PMCID: PMC4539512 DOI: 10.3389/fnins.2015.00284] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2015] [Accepted: 07/29/2015] [Indexed: 01/21/2023] Open
Abstract
Electroencephalography source imaging (ESI) is a useful technique to localize the generators from a given scalp electric measurement and to investigate the temporal dynamics of the large-scale neural circuits. By introducing reasonable priors from other modalities, ESI reveals the most probable sources and communication structures at every moment in time. Here, we review the available priors from such techniques as magnetic resonance imaging (MRI), functional MRI (fMRI), and positron emission tomography (PET). The modality's specific contribution is analyzed from the perspective of source reconstruction. For spatial priors, EEG-correlated fMRI, temporally coherent networks (TCNs) and resting-state fMRI are systematically introduced in the ESI. Moreover, the fiber tracking (diffusion tensor imaging, DTI) and neuro-stimulation techniques (transcranial magnetic stimulation, TMS) are also introduced as the potential priors, which can help to draw inferences about the neuroelectric connectivity in the source space. We conclude that combining EEG source imaging with other complementary modalities is a promising approach toward the study of brain networks in cognitive and clinical neurosciences.
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Affiliation(s)
- Xu Lei
- Sleep and NeuroImaging Center, Faculty of Psychology, Southwest University Chongqing, China ; Key Laboratory of Cognition and Personality, Ministry of Education Chongqing, China
| | - Taoyu Wu
- Sleep and NeuroImaging Center, Faculty of Psychology, Southwest University Chongqing, China ; Key Laboratory of Cognition and Personality, Ministry of Education Chongqing, China
| | - Pedro A Valdes-Sosa
- Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of China Chengdu, China ; Cuban Neuroscience Center Cubanacan, Playa, Cuba
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Bauer M, Pursiainen S, Vorwerk J, Kostler H, Wolters CH. Comparison Study for Whitney (Raviart-Thomas)-Type Source Models in Finite-Element-Method-Based EEG Forward Modeling. IEEE Trans Biomed Eng 2015; 62:2648-56. [PMID: 26054057 DOI: 10.1109/tbme.2015.2439282] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
This study concentrates on finite-element-method (FEM)-based electroencephalography (EEG) forward simulation in which the electric potential evoked by neural activity in the brain is to be calculated at the surface of the head. The main advantage of the FEM is that it allows realistic modeling of tissue conductivity inhomogeneity. However, it is not straightforward to apply the classical model of a dipolar source with the FEM, due to its strong singularity and the resulting irregularity. The focus of this study is on comparing different methods to cope with this problem. In particular, we evaluate the accuracy of Whitney (Raviart-Thomas)-type dipole-like source currents compared to two reference dipole modeling methods: the St. Venant and partial integration approach. Common to all these methods is that they enable direct approximation of the potential field utilizing linear basis functions. In the present context, Whitney elements are particularly interesting, as they provide a simple means to model a divergence-conforming primary current vector field satisfying the square integrability condition. Our results show that a Whitney-type source model can provide simulation accuracy comparable to the present reference methods. It can lead to superior accuracy under optimized conditions with respect to both source location and orientation in a tetrahedral mesh. For random source orientations, the St. Venant approach turns out to be the method of choice over the interpolated version of the Whitney model. The overall moderate differences obtained suggest that practical aspects, such as the focality, should be prioritized when choosing a source model.
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Huang Y, Parra LC. Fully automated whole-head segmentation with improved smoothness and continuity, with theory reviewed. PLoS One 2015; 10:e0125477. [PMID: 25992793 PMCID: PMC4436344 DOI: 10.1371/journal.pone.0125477] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Accepted: 03/24/2015] [Indexed: 11/25/2022] Open
Abstract
Individualized current-flow models are needed for precise targeting of brain structures using transcranial electrical or magnetic stimulation (TES/TMS). The same is true for current-source reconstruction in electroencephalography and magnetoencephalography (EEG/MEG). The first step in generating such models is to obtain an accurate segmentation of individual head anatomy, including not only brain but also cerebrospinal fluid (CSF), skull and soft tissues, with a field of view (FOV) that covers the whole head. Currently available automated segmentation tools only provide results for brain tissues, have a limited FOV, and do not guarantee continuity and smoothness of tissues, which is crucially important for accurate current-flow estimates. Here we present a tool that addresses these needs. It is based on a rigorous Bayesian inference framework that combines image intensity model, anatomical prior (atlas) and morphological constraints using Markov random fields (MRF). The method is evaluated on 20 simulated and 8 real head volumes acquired with magnetic resonance imaging (MRI) at 1 mm3 resolution. We find improved surface smoothness and continuity as compared to the segmentation algorithms currently implemented in Statistical Parametric Mapping (SPM). With this tool, accurate and morphologically correct modeling of the whole-head anatomy for individual subjects may now be feasible on a routine basis. Code and data are fully integrated into SPM software tool and are made publicly available. In addition, a review on the MRI segmentation using atlas and the MRF over the last 20 years is also provided, with the general mathematical framework clearly derived.
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Affiliation(s)
- Yu Huang
- Department of Biomedical Engineering, City College of the City University of New York, New York, NY, USA
| | - Lucas C. Parra
- Department of Biomedical Engineering, City College of the City University of New York, New York, NY, USA
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Aydin Ü, Vorwerk J, Dümpelmann M, Küpper P, Kugel H, Heers M, Wellmer J, Kellinghaus C, Haueisen J, Rampp S, Stefan H, Wolters CH. Combined EEG/MEG can outperform single modality EEG or MEG source reconstruction in presurgical epilepsy diagnosis. PLoS One 2015; 10:e0118753. [PMID: 25761059 PMCID: PMC4356563 DOI: 10.1371/journal.pone.0118753] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Accepted: 01/06/2015] [Indexed: 11/25/2022] Open
Abstract
We investigated two important means for improving source reconstruction in presurgical epilepsy diagnosis. The first investigation is about the optimal choice of the number of epileptic spikes in averaging to (1) sufficiently reduce the noise bias for an accurate determination of the center of gravity of the epileptic activity and (2) still get an estimation of the extent of the irritative zone. The second study focuses on the differences in single modality EEG (80-electrodes) or MEG (275-gradiometers) and especially on the benefits of combined EEG/MEG (EMEG) source analysis. Both investigations were validated with simultaneous stereo-EEG (sEEG) (167-contacts) and low-density EEG (ldEEG) (21-electrodes). To account for the different sensitivity profiles of EEG and MEG, we constructed a six-compartment finite element head model with anisotropic white matter conductivity, and calibrated the skull conductivity via somatosensory evoked responses. Our results show that, unlike single modality EEG or MEG, combined EMEG uses the complementary information of both modalities and thereby allows accurate source reconstructions also at early instants in time (epileptic spike onset), i.e., time points with low SNR, which are not yet subject to propagation and thus supposed to be closer to the origin of the epileptic activity. EMEG is furthermore able to reveal the propagation pathway at later time points in agreement with sEEG, while EEG or MEG alone reconstructed only parts of it. Subaveraging provides important and accurate information about both the center of gravity and the extent of the epileptogenic tissue that neither single nor grand-averaged spike localizations can supply.
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Affiliation(s)
- Ümit Aydin
- Institute for Biomagnetism and Biosignalanalysis, Westfälische Wilhelms-Universität Münster, Münster, Germany
- Institute for Biomedical Engineering and Informatics, Technische Universität Ilmenau, Ilmenau, Germany
- * E-mail:
| | - Johannes Vorwerk
- Institute for Biomagnetism and Biosignalanalysis, Westfälische Wilhelms-Universität Münster, Münster, Germany
| | - Matthias Dümpelmann
- Epilepsy Center, Universitätsklinikum Freiburg, Freiburg im Breisgau, Germany
| | - Philipp Küpper
- Institute for Biomagnetism and Biosignalanalysis, Westfälische Wilhelms-Universität Münster, Münster, Germany
- Department of Neurology, Klinikum Osnabrück, Osnabrück, Germany
| | - Harald Kugel
- Department of Clinical Radiology, Universitätsklinikum Münster, Münster, Germany
| | - Marcel Heers
- Epilepsy Center, Universitätsklinikum Freiburg, Freiburg im Breisgau, Germany
- Ruhr-Epileptology Department of Neurology, Universitätsklinikum Knappschaftskrankenhaus Bochum, Bochum, Germany
| | - Jörg Wellmer
- Ruhr-Epileptology Department of Neurology, Universitätsklinikum Knappschaftskrankenhaus Bochum, Bochum, Germany
| | | | - Jens Haueisen
- Institute for Biomedical Engineering and Informatics, Technische Universität Ilmenau, Ilmenau, Germany
| | - Stefan Rampp
- Ruhr-Epileptology Department of Neurology, Universitätsklinikum Knappschaftskrankenhaus Bochum, Bochum, Germany
- Epilepsy Center, Department of Neurology, Universitätsklinikum Erlangen, Erlangen, Germany
| | - Hermann Stefan
- Epilepsy Center, Department of Neurology, Universitätsklinikum Erlangen, Erlangen, Germany
| | - Carsten H. Wolters
- Institute for Biomagnetism and Biosignalanalysis, Westfälische Wilhelms-Universität Münster, Münster, Germany
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Tian S, Huang JZ, Shen H. Solving the MEG Inverse Problem: A Robust Two-Way Regularization Method. Technometrics 2015. [DOI: 10.1080/00401706.2014.887594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Siva Tian
- Department of Psychology, University of Houston, Houson, TX 77004
| | - Jianhua Z. Huang
- Department of Statistics, Texas A&M University, College Station, TX 77843
| | - Haipeng Shen
- Department of Statistics and Operations Research, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599
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Hsu CF, Benikos N, Sonuga-Barke EJS. Spontaneous activity in the waiting brain: a marker of impulsive choice in attention-deficit/hyperactivity disorder? Dev Cogn Neurosci 2015; 12:114-22. [PMID: 25681956 PMCID: PMC6989780 DOI: 10.1016/j.dcn.2015.01.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2014] [Revised: 12/09/2014] [Accepted: 01/22/2015] [Indexed: 11/25/2022] Open
Abstract
In controls very low frequency (VLF) EEG attenuated during task and waiting periods. In ADHD there was less attenuation during tasks and none at all during waiting. Degree of waiting attenuation correlated with parent's ratings of impulsive choice. Aberrant waiting VLF EEG may be a neural marker for impulsive choice in ADHD.
Background Spontaneous very low frequency oscillations (VLFO), seen in the resting brain, are attenuated when individuals are working on attention demanding tasks or waiting for rewards (Hsu et al., 2013). Individuals with attention-deficit/hyperactivity disorder (ADHD) display excess VLFO when working on attention tasks. They also have difficulty waiting for rewards. Here we examined the waiting brain signature in ADHD and its association with impulsive choice. Methods DC-EEG from 21 children with ADHD and 21 controls (9–15 years) were collected under four conditions: (i) resting; (ii) choosing to wait; (iii) being “forced” to wait; and (iv) working on a reaction time task. A questionnaire measured two components of impulsive choice. Results Significant VLFO reductions were observed in controls within anterior brain regions in both working and waiting conditions. Individuals with ADHD showed VLFO attenuation while working but to a reduced level and none at all when waiting. A closer inspection revealed an increase of VLFO activity in temporal regions during waiting. Excess VLFO activity during waiting was associated with parents’ ratings of temporal discounting and delay aversion. Conclusions The results highlight the potential role for waiting-related spontaneous neural activity in the pathophysiology of impulsive decision-making of ADHD.
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Affiliation(s)
- Chia-Fen Hsu
- Institute for Disorders of Impulse & Attention, Developmental Brain-Behaviour Laboratory, Psychology, University of Southampton, UK
| | - Nicholas Benikos
- Institute for Disorders of Impulse & Attention, Developmental Brain-Behaviour Laboratory, Psychology, University of Southampton, UK
| | - Edmund J S Sonuga-Barke
- Institute for Disorders of Impulse & Attention, Developmental Brain-Behaviour Laboratory, Psychology, University of Southampton, UK; Department of Experimental Clinical & Health Psychology, Ghent University, Belgium.
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González-Hernández JA, Pita-Alcorta C, Padrón A, Finalé A, Galán L, Martínez E, Díaz-Comas L, Samper-González JA, Lencer R, Marot M. Basic visual dysfunction allows classification of patients with schizophrenia with exceptional accuracy. Schizophr Res 2014; 159:226-33. [PMID: 25176497 DOI: 10.1016/j.schres.2014.07.052] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/05/2013] [Revised: 07/28/2014] [Accepted: 07/31/2014] [Indexed: 10/24/2022]
Abstract
Basic visual dysfunctions are commonly reported in schizophrenia; however their value as diagnostic tools remains uncertain. This study reports a novel electrophysiological approach using checkerboard visual evoked potentials (VEP). Sources of spectral resolution VEP-components C1, P1 and N1 were estimated by LORETA, and the band-effects (BSE) on these estimated sources were explored in each subject. BSEs were Z-transformed for each component and relationships with clinical variables were assessed. Clinical effects were evaluated by ROC-curves and predictive values. Forty-eight patients with schizophrenia (SZ) and 55 healthy controls participated in the study. For each of the 48 patients, the three VEP components were localized to both dorsal and ventral brain areas and also deviated from a normal distribution. P1 and N1 deviations were independent of treatment, illness chronicity or gender. Results from LORETA also suggest that deficits in thalamus, posterior cingulum, precuneus, superior parietal and medial occipitotemporal areas were associated with symptom severity. While positive symptoms were more strongly related to sensory processing deficits (P1), negative symptoms were more strongly related to perceptual processing dysfunction (N1). Clinical validation revealed positive and negative predictive values for correctly classifying SZ of 100% and 77%, respectively. Classification in an additional independent sample of 30 SZ corroborated these results. In summary, this novel approach revealed basic visual dysfunctions in all patients with schizophrenia, suggesting these visual dysfunctions represent a promising candidate as a biomarker for schizophrenia.
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Affiliation(s)
- J A González-Hernández
- Departments of Neurophysiology and Psychiatry, "Hermanos-Ameijeiras" Hospital, University of Medical Science of Havana, Cuba; Department of Psychiatry and Psychotherapy, University of Münster, Germany.
| | - C Pita-Alcorta
- Department of Psychiatry, "Manuel Fajardo" Hospital, University of Medical Science of Havana, Cuba
| | - A Padrón
- Departments of Neurophysiology and Psychiatry, "Hermanos-Ameijeiras" Hospital, University of Medical Science of Havana, Cuba
| | - A Finalé
- Departments of Neurophysiology and Psychiatry, "Hermanos-Ameijeiras" Hospital, University of Medical Science of Havana, Cuba
| | - L Galán
- Departments of Neurostatistics and Neuroinformatics, Cuban Neuroscience Center, Havana, Cuba
| | - E Martínez
- Departments of Neurostatistics and Neuroinformatics, Cuban Neuroscience Center, Havana, Cuba
| | - L Díaz-Comas
- Departments of Neurostatistics and Neuroinformatics, Cuban Neuroscience Center, Havana, Cuba
| | | | - R Lencer
- Department of Psychiatry and Psychotherapy, University of Münster, Germany
| | - M Marot
- Departments of Neurophysiology and Psychiatry, "Hermanos-Ameijeiras" Hospital, University of Medical Science of Havana, Cuba
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Strobbe G, van Mierlo P, De Vos M, Mijović B, Hallez H, Van Huffel S, López JD, Vandenberghe S. Bayesian model selection of template forward models for EEG source reconstruction. Neuroimage 2014; 93 Pt 1:11-22. [DOI: 10.1016/j.neuroimage.2014.02.022] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Revised: 01/29/2014] [Accepted: 02/14/2014] [Indexed: 10/25/2022] Open
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Influence of skull modeling approaches on EEG source localization. Brain Topogr 2013; 27:95-111. [PMID: 24002699 DOI: 10.1007/s10548-013-0313-y] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Accepted: 08/21/2013] [Indexed: 10/26/2022]
Abstract
Electroencephalographic source localization (ESL) relies on an accurate model representing the human head for the computation of the forward solution. In this head model, the skull is of utmost importance due to its complex geometry and low conductivity compared to the other tissues inside the head. We investigated the influence of using different skull modeling approaches on ESL. These approaches, consisting in skull conductivity and geometry modeling simplifications, make use of X-ray computed tomography (CT) and magnetic resonance (MR) images to generate seven different head models. A head model with an accurately segmented skull from CT images, including spongy and compact bone compartments as well as some air-filled cavities, was used as the reference model. EEG simulations were performed for a configuration of 32 and 128 electrodes, and for both noiseless and noisy data. The results show that skull geometry simplifications have a larger effect on ESL than those of the conductivity modeling. This suggests that accurate skull modeling is important in order to achieve reliable results for ESL that are useful in a clinical environment. We recommend the following guidelines to be taken into account for skull modeling in the generation of subject-specific head models: (i) If CT images are available, i.e., if the geometry of the skull and its different tissue types can be accurately segmented, the conductivity should be modeled as isotropic heterogeneous. The spongy bone might be segmented as an erosion of the compact bone; (ii) when only MR images are available, the skull base should be represented as accurately as possible and the conductivity can be modeled as isotropic heterogeneous, segmenting the spongy bone directly from the MR image; (iii) a large number of EEG electrodes should be used to obtain high spatial sampling, which reduces the localization errors at realistic noise levels.
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Lew S, Sliva DD, Choe MS, Grant PE, Okada Y, Wolters CH, Hämäläinen MS. Effects of sutures and fontanels on MEG and EEG source analysis in a realistic infant head model. Neuroimage 2013; 76:282-93. [PMID: 23531680 PMCID: PMC3760345 DOI: 10.1016/j.neuroimage.2013.03.017] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Revised: 02/13/2013] [Accepted: 03/12/2013] [Indexed: 10/27/2022] Open
Abstract
In infants, the fontanels and sutures as well as conductivity of the skull influence the volume currents accompanying primary currents generated by active neurons and thus the associated electroencephalography (EEG) and magnetoencephalography (MEG) signals. We used a finite element method (FEM) to construct a realistic model of the head of an infant based on MRI images. Using this model, we investigated the effects of the fontanels, sutures and skull conductivity on forward and inverse EEG and MEG source analysis. Simulation results show that MEG is better suited than EEG to study early brain development because it is much less sensitive than EEG to distortions of the volume current caused by the fontanels and sutures and to inaccurate estimates of skull conductivity. Best results will be achieved when MEG and EEG are used in combination.
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Affiliation(s)
- Seok Lew
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, 149 13th Street, Suite 2301, Charlestown 02129, USA.
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Akalin Acar Z, Makeig S. Effects of forward model errors on EEG source localization. Brain Topogr 2013; 26:378-96. [PMID: 23355112 PMCID: PMC3683142 DOI: 10.1007/s10548-012-0274-6] [Citation(s) in RCA: 154] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2012] [Accepted: 12/21/2012] [Indexed: 11/11/2022]
Abstract
Subject-specific four-layer boundary element method (BEM) electrical forward head models for four participants, generated from magnetic resonance (MR) head images using NFT ( www.sccn.ucsd.edu/wiki/NFT ), were used to simulate electroencephalographic (EEG) scalp potentials at 256 recorded electrode positions produced by single current dipoles of a 3-D grid in brain space. Locations of these dipoles were then estimated using gradient descent within five template head models fit to the electrode positions. These were: a spherical model, three-layer and four-layer BEM head models based on the Montreal Neurological Institute (MNI) template head image, and these BEM models warped to the recorded electrode positions. Smallest localization errors (4.1-6.2 mm, medians) were obtained using the electrode-position warped four-layer BEM models, with largest localization errors (~20 mm) for most basal brain locations. When we increased the brain-to-skull conductivity ratio assumed in the template model scalp projections from the simulated value (25:1) to a higher value (80:1) used in earlier studies, the estimated dipole locations moved outwards (12.4 mm, median). We also investigated the effects of errors in co-registering the electrode positions, of reducing electrode counts, and of adding a fifth, isotropic white matter layer to one individual head model. Results show that when individual subject MR head images are not available to construct subject-specific head models, accurate EEG source localization should employ a four- or five-layer BEM template head model incorporating an accurate skull conductivity estimate and warped to 64 or more accurately 3-D measured and co-registered electrode positions.
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Affiliation(s)
- Zeynep Akalin Acar
- Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA 92093-0559 USA
| | - Scott Makeig
- Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA 92093-0559 USA
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