1
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Calabrese RL, Marder E. Degenerate neuronal and circuit mechanisms important for generating rhythmic motor patterns. Physiol Rev 2025; 105:95-135. [PMID: 39453990 DOI: 10.1152/physrev.00003.2024] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 06/10/2024] [Accepted: 06/11/2024] [Indexed: 10/27/2024] Open
Abstract
In 1996, we published a review article (Marder E, Calabrese RL. Physiol Rev 76: 687-717, 1996) describing the state of knowledge about the structure and function of the central pattern-generating circuits important for producing rhythmic behaviors. Although many of the core questions persist, much has changed since 1996. Here, we focus on newer studies that reveal ambiguities that complicate understanding circuit dynamics, despite the enormous technical advances of the recent past. In particular, we highlight recent studies of animal-to-animal variability and our understanding that circuit rhythmicity may be supported by multiple state-dependent mechanisms within the same animal and that robustness and resilience in the face of perturbation may depend critically on the presence of modulators and degenerate circuit mechanisms. Additionally, we highlight the use of computational models to ask whether there are generalizable principles about circuit motifs that can be found across rhythmic motor systems in different animal species.
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Affiliation(s)
| | - Eve Marder
- Brandeis University, Waltham, Massachusetts, United States
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2
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Song M, Shin EJ, Seo H, Soltani A, Steinmetz NA, Lee D, Jung MW, Paik SB. Hierarchical gradients of multiple timescales in the mammalian forebrain. Proc Natl Acad Sci U S A 2024; 121:e2415695121. [PMID: 39671181 DOI: 10.1073/pnas.2415695121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2024] [Accepted: 11/14/2024] [Indexed: 12/14/2024] Open
Abstract
Many anatomical and physiological features of cortical circuits, ranging from the biophysical properties of synapses to the connectivity patterns among different neuron types, exhibit consistent variation along the hierarchical axis from sensory to association areas. Notably, the temporal correlation of neural activity at rest, known as the intrinsic timescale, increases systematically along this hierarchy in both primates and rodents, analogous to the increasing scale and complexity of spatial receptive fields. However, how the timescales for task-related activity vary across brain regions and whether their hierarchical organization appears consistently across different mammalian species remain unexplored. Here, we show that both the intrinsic timescale and those of task-related activity follow a similar hierarchical gradient in the cortices of monkeys, rats, and mice. We also found that these timescales covary similarly in both the cortex and basal ganglia, whereas the timescales of thalamic activity are shorter than cortical timescales and do not conform to the hierarchical order predicted by their cortical projections. These results suggest that the hierarchical gradient of cortical timescales might represent a universal feature of intracortical circuits in the mammalian brain.
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Affiliation(s)
- Min Song
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Eun Ju Shin
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
- Center for Synaptic Brain Dysfunctions, Institute for Basic Science, Daejeon 34141, Republic of Korea
| | - Hyojung Seo
- Department of Psychiatry, Yale University, New Haven, CT 06520
| | - Alireza Soltani
- Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH 03755
| | - Nicholas A Steinmetz
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA 98195
| | - Daeyeol Lee
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218
- Kavli Discovery Neuroscience Institute, Johns Hopkins University, Baltimore, MD 21218
- Department of Psychological and Brain Sciences, Johns Hopkins University, Baltimore, MD 21218
- Department of Neuroscience, Johns Hopkins University, Baltimore, MD 21218
| | - Min Whan Jung
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
- Center for Synaptic Brain Dysfunctions, Institute for Basic Science, Daejeon 34141, Republic of Korea
| | - Se-Bum Paik
- Department of Brain and Cognitive Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
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3
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Fenk LA, Riquelme JL, Laurent G. Central pattern generator control of a vertebrate ultradian sleep rhythm. Nature 2024; 636:681-689. [PMID: 39506115 DOI: 10.1038/s41586-024-08162-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Accepted: 10/07/2024] [Indexed: 11/08/2024]
Abstract
The mechanisms underlying the mammalian ultradian sleep rhythm-the alternation of rapid-eye-movement (REM) and slow-wave (SW) states-are not well understood but probably depend, at least in part, on circuits in the brainstem1-6. Here, we use perturbation experiments to probe this ultradian rhythm in sleeping lizards (Pogona vitticeps)7-9 and test the hypothesis that it originates in a central pattern generator10,11-circuits that are typically susceptible to phase-dependent reset and entrainment by external stimuli12. Using light pulses, we find that Pogona's ultradian rhythm8 can be reset in a phase-dependent manner, with a critical transition from phase delay to phase advance in the middle of SW. The ultradian rhythm frequency can be decreased or increased, within limits, by entrainment with light pulses. During entrainment, Pogona REM (REMP) can be shortened but not lengthened, whereas SW can be dilated more flexibly. In awake animals, a few alternating light/dark epochs matching natural REMP and SW durations entrain a sleep-like brain rhythm, suggesting the transient activation of an ultradian rhythm generator. In sleeping animals, a light pulse delivered to a single eye causes an immediate ultradian rhythm reset, but only of the contralateral hemisphere; both sides resynchronize spontaneously, indicating that sleep is controlled by paired rhythm-generating circuits linked by functional excitation. Our results indicate that central pattern generators of a type usually known to control motor rhythms may also organize the ultradian sleep rhythm in a vertebrate.
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Affiliation(s)
- Lorenz A Fenk
- Max Planck Institute for Brain Research, Frankfurt, Germany.
- Max Planck Institute for Biological Intelligence, Martinsried, Germany.
| | | | - Gilles Laurent
- Max Planck Institute for Brain Research, Frankfurt, Germany.
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4
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Sridhar G, Vergassola M, Marques JC, Orger MB, Costa AC, Wyart C. Uncovering multiscale structure in the variability of larval zebrafish navigation. Proc Natl Acad Sci U S A 2024; 121:e2410254121. [PMID: 39546569 PMCID: PMC11588111 DOI: 10.1073/pnas.2410254121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 09/23/2024] [Indexed: 11/17/2024] Open
Abstract
Animals chain movements into long-lived motor strategies, exhibiting variability across scales that reflects the interplay between internal states and environmental cues. To reveal structure in such variability, we build Markov models of movement sequences that bridge across timescales and enable a quantitative comparison of behavioral phenotypes among individuals. Applied to larval zebrafish responding to diverse sensory cues, we uncover a hierarchy of long-lived motor strategies, dominated by changes in orientation distinguishing cruising versus wandering strategies. Environmental cues induce preferences along these modes at the population level: while fish cruise in the light, they wander in response to aversive stimuli, or in search for appetitive prey. As our method encodes the behavioral dynamics of each individual fish in the transitions among coarse-grained motor strategies, we use it to uncover a hierarchical structure in the phenotypic variability that reflects exploration-exploitation trade-offs. Across a wide range of sensory cues, a major source of variation among fish is driven by prior and/or immediate exposure to prey that induces exploitation phenotypes. A large degree of variability that is not explained by environmental cues unravels hidden states that override the sensory context to induce contrasting exploration-exploitation phenotypes. Altogether, by extracting the timescales of motor strategies deployed during navigation, our approach exposes structure among individuals and reveals internal states tuned by prior experience.
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Affiliation(s)
- Gautam Sridhar
- Sorbonne University, Paris Brain Institute (Institut du Cerveau), Inserm U1127, CNRS UMR 7225, Paris75013, France
| | - Massimo Vergassola
- Laboratoire de Physique de l’Ecole normale supérieure, École Normale Supérieure, Université Paris Sciences & Lettres, CNRS, Sorbonne Université, Université de Paris, ParisF-75005, France
| | - João C. Marques
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa1400-038, Portugal
| | - Michael B. Orger
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa1400-038, Portugal
| | - Antonio Carlos Costa
- Sorbonne University, Paris Brain Institute (Institut du Cerveau), Inserm U1127, CNRS UMR 7225, Paris75013, France
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa1400-038, Portugal
| | - Claire Wyart
- Sorbonne University, Paris Brain Institute (Institut du Cerveau), Inserm U1127, CNRS UMR 7225, Paris75013, France
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5
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Mohammad F, Mai Y, Ho J, Zhang X, Ott S, Stewart JC, Claridge-Chang A. Dopamine neurons that inform Drosophila olfactory memory have distinct, acute functions driving attraction and aversion. PLoS Biol 2024; 22:e3002843. [PMID: 39556592 DOI: 10.1371/journal.pbio.3002843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 09/16/2024] [Indexed: 11/20/2024] Open
Abstract
The brain must guide immediate responses to beneficial and harmful stimuli while simultaneously writing memories for future reference. While both immediate actions and reinforcement learning are instructed by dopamine, how dopaminergic systems maintain coherence between these 2 reward functions is unknown. Through optogenetic activation experiments, we showed that the dopamine neurons that inform olfactory memory in Drosophila have a distinct, parallel function driving attraction and aversion (valence). Sensory neurons required for olfactory memory were dispensable to dopaminergic valence. A broadly projecting set of dopaminergic cells had valence that was dependent on dopamine, glutamate, and octopamine. Similarly, a more restricted dopaminergic cluster with attractive valence was reliant on dopamine and glutamate; flies avoided opto-inhibition of this narrow subset, indicating the role of this cluster in controlling ongoing behavior. Dopamine valence was distinct from output-neuron opto-valence in locomotor pattern, strength, and polarity. Overall, our data suggest that dopamine's acute effect on valence provides a mechanism by which a dopaminergic system can coherently write memories to influence future responses while guiding immediate attraction and aversion.
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Affiliation(s)
- Farhan Mohammad
- Program in Neuroscience and Behavioural Disorders, Duke-NUS Medical School, Singapore
- Institute for Molecular and Cell Biology, A*STAR, Singapore
- Division of Biological and Biomedical Sciences, College of Health & Life Sciences, Hamad Bin Khalifa University, Qatar
| | - Yishan Mai
- Program in Neuroscience and Behavioural Disorders, Duke-NUS Medical School, Singapore
| | - Joses Ho
- Institute for Molecular and Cell Biology, A*STAR, Singapore
| | - Xianyuan Zhang
- Program in Neuroscience and Behavioural Disorders, Duke-NUS Medical School, Singapore
- Department of Pharmacology, National University of Singapore, Singapore
| | - Stanislav Ott
- Program in Neuroscience and Behavioural Disorders, Duke-NUS Medical School, Singapore
| | | | - Adam Claridge-Chang
- Program in Neuroscience and Behavioural Disorders, Duke-NUS Medical School, Singapore
- Institute for Molecular and Cell Biology, A*STAR, Singapore
- Department of Physiology, National University of Singapore, Singapore
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6
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Dhingra RR, MacFarlane PM, Thomas PJ, Paton JFR, Dutschmann M. Asymmetric neuromodulation in the respiratory network contributes to rhythm and pattern generation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.11.623076. [PMID: 39605441 PMCID: PMC11601293 DOI: 10.1101/2024.11.11.623076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2024]
Abstract
Like other brain circuits, the brainstem respiratory network is continually modulated by neurotransmitters that activate slow metabotropic receptors. In many cases, activation of these receptors only subtly modulates the respiratory motor pattern. However, activation of some receptor types evokes the arrest of the respiratory motor pattern as can occur following the activation of μ-opioid receptors. We propose that the varied effects of neuromodulation on the respiratory motor pattern depend on the pattern of neuromodulator receptor expression and their influence on the excitability of their post-synaptic targets. Because a comprehensive characterization of these cellular properties across the respiratory network remains challenging, we test our hypothesis by combining computational modelling with ensemble electrophysiologic recording in the pre-Bötzinger complex (pre-BötC) using high-density multi-electrode arrays (MEA). Our computational model encapsulates the hypothesis that neuromodulatory transmission is organized asymmetrically across the respiratory network to promote rhythm and pattern generation. To test this hypothesis, we increased the strength of neuromodulatory connections in the model and used selective agonists in situ while monitoring pre-BötC ensemble activities. The model predictions of increasing slow inhibition were consistent with experiments examining the effect of systemic administration of the 5HT1aR agonist 8-OH-DPAT. Similarly, the predicted effects of increasing slow excitation in the model were experimentally confirmed in pre-BötC ensemble activities before and after systemic administration of the μ-opioid receptor agonist fentanyl. We conclude that asymmetric neuromodulation can contribute to respiratory rhythm and pattern generation and accounts for its varied effects on breathing.
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Affiliation(s)
- Rishi R Dhingra
- Present Address: Division of Pulmonary, Critical Care and Sleep, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA
- The Florey Department of Neuroscience & Mental Health, University of Melbourne, Parkville, Victoria, Australia
| | - Peter M MacFarlane
- Department of Pediatrics, Rainbow Babies & Children's Hospital, Case Western Reserve University, Cleveland, OH, USA
| | - Peter J Thomas
- Manaaki Manawa - The Centre for Heart Research, Department of Physiology, University of Auckland, Auckland, New Zealand
| | - Julian F R Paton
- Present Address: Division of Pulmonary, Critical Care and Sleep, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA
- The Florey Department of Neuroscience & Mental Health, University of Melbourne, Parkville, Victoria, Australia
- Department of Pediatrics, Rainbow Babies & Children's Hospital, Case Western Reserve University, Cleveland, OH, USA
- Department of Mathematics, Applied Mathematics and Statistics, Case Western Reserve University, Cleveland, OH, USA
- Manaaki Manawa - The Centre for Heart Research, Department of Physiology, University of Auckland, Auckland, New Zealand
| | - Mathias Dutschmann
- Present Address: Division of Pulmonary, Critical Care and Sleep, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA
- The Florey Department of Neuroscience & Mental Health, University of Melbourne, Parkville, Victoria, Australia
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7
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Watteyne J, Chudinova A, Ripoll-Sánchez L, Schafer WR, Beets I. Neuropeptide signaling network of Caenorhabditis elegans: from structure to behavior. Genetics 2024; 228:iyae141. [PMID: 39344922 PMCID: PMC11538413 DOI: 10.1093/genetics/iyae141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Accepted: 08/19/2024] [Indexed: 10/01/2024] Open
Abstract
Neuropeptides are abundant signaling molecules that control neuronal activity and behavior in all animals. Owing in part to its well-defined and compact nervous system, Caenorhabditis elegans has been one of the primary model organisms used to investigate how neuropeptide signaling networks are organized and how these neurochemicals regulate behavior. We here review recent work that has expanded our understanding of the neuropeptidergic signaling network in C. elegans by mapping the evolutionary conservation, the molecular expression, the receptor-ligand interactions, and the system-wide organization of neuropeptide pathways in the C. elegans nervous system. We also describe general insights into neuropeptidergic circuit motifs and the spatiotemporal range of peptidergic transmission that have emerged from in vivo studies on neuropeptide signaling. With efforts ongoing to chart peptide signaling networks in other organisms, the C. elegans neuropeptidergic connectome can serve as a prototype to further understand the organization and the signaling dynamics of these networks at organismal level.
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Affiliation(s)
- Jan Watteyne
- Department of Biology, University of Leuven, Leuven 3000, Belgium
| | | | - Lidia Ripoll-Sánchez
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
- Department of Psychiatry, Cambridge University, Cambridge CB2 0SZ, UK
| | - William R Schafer
- Department of Biology, University of Leuven, Leuven 3000, Belgium
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
| | - Isabel Beets
- Department of Biology, University of Leuven, Leuven 3000, Belgium
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8
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McGregor JN, Farris CA, Ensley S, Schneider A, Fosque LJ, Wang C, Tilden EI, Liu Y, Tu J, Elmore H, Ronayne KD, Wessel R, Dyer EL, Bhaskaran-Nair K, Holtzman DM, Hengen KB. Failure in a population: Tauopathy disrupts homeostatic set-points in emergent dynamics despite stability in the constituent neurons. Neuron 2024; 112:3567-3584.e5. [PMID: 39241778 PMCID: PMC11560743 DOI: 10.1016/j.neuron.2024.08.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 06/24/2024] [Accepted: 08/09/2024] [Indexed: 09/09/2024]
Abstract
Homeostatic regulation of neuronal activity is essential for robust computation; set-points, such as firing rate, are actively stabilized to compensate for perturbations. The disruption of brain function central to neurodegenerative disease likely arises from impairments of computationally essential set-points. Here, we systematically investigated the effects of tau-mediated neurodegeneration on all known set-points in neuronal activity. We continuously tracked hippocampal neuronal activity across the lifetime of a mouse model of tauopathy. We were unable to detect effects of disease in measures of single-neuron firing activity. By contrast, as tauopathy progressed, there was disruption of network-level neuronal activity, quantified by measuring neuronal pairwise interactions and criticality, a homeostatically controlled, ideal computational regime. Deviations in criticality correlated with symptoms, predicted underlying anatomical pathology, occurred in a sleep-wake-dependent manner, and could be used to reliably classify an animal's genotype. This work illustrates how neurodegeneration may disrupt the computational capacity of neurobiological systems.
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Affiliation(s)
- James N McGregor
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Clayton A Farris
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Sahara Ensley
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Aidan Schneider
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Leandro J Fosque
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Chao Wang
- Department of Neurology, Hope Center for Neurological Disorders, Knight Alzheimer's Disease Research Center, Washington University in Saint Louis, St. Louis, MO, USA; Institute for Brain Science and Disease, Chongqing Medical University, Chongqing 400016, China
| | - Elizabeth I Tilden
- Department of Neuroscience, Washington University in Saint Louis, St. Louis, MO, USA
| | - Yuqi Liu
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Jianhong Tu
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Halla Elmore
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Keenan D Ronayne
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA
| | - Ralf Wessel
- Department of Physics, Washington University in Saint Louis, St. Louis, MO, USA
| | - Eva L Dyer
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | | | - David M Holtzman
- Department of Neurology, Hope Center for Neurological Disorders, Knight Alzheimer's Disease Research Center, Washington University in Saint Louis, St. Louis, MO, USA
| | - Keith B Hengen
- Department of Biology, Washington University in Saint Louis, St. Louis, MO, USA.
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9
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Beer RD, Barwich AS, Severino GJ. Milking a spherical cow: Toy models in neuroscience. Eur J Neurosci 2024; 60:6359-6374. [PMID: 39257366 DOI: 10.1111/ejn.16529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 07/19/2024] [Accepted: 08/25/2024] [Indexed: 09/12/2024]
Abstract
There are many different kinds of models, and they play many different roles in the scientific endeavour. Neuroscience, and biology more generally, has understandably tended to emphasise empirical models that are grounded in data and make specific, experimentally testable predictions. Meanwhile, strongly idealised or 'toy' models have played a central role in the theoretical development of other sciences such as physics. In this paper, we examine the nature of toy models and their prospects in neuroscience.
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Affiliation(s)
- Randall D Beer
- Cognitive Science Program, Indiana University, Bloomington, Indiana, USA
- Neuroscience Program, Indiana University, Bloomington, Indiana, USA
- Department of Informatics, Indiana University, Bloomington, Indiana, USA
| | - Ann-Sophie Barwich
- Cognitive Science Program, Indiana University, Bloomington, Indiana, USA
- Neuroscience Program, Indiana University, Bloomington, Indiana, USA
- Department of History and Philosophy of Science and Medicine, Indiana University, Bloomington, Indiana, USA
| | - Gabriel J Severino
- Cognitive Science Program, Indiana University, Bloomington, Indiana, USA
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10
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Lo JY, Adam KM, Garrison JL. Neuropeptide inactivation regulates egg-laying behavior to influence reproductive health in Caenorhabditis elegans. Curr Biol 2024; 34:4715-4728.e4. [PMID: 39395417 DOI: 10.1016/j.cub.2024.09.059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Revised: 07/11/2024] [Accepted: 09/23/2024] [Indexed: 10/14/2024]
Abstract
Neural communication requires both fast-acting neurotransmitters and neuromodulators that function on slower timescales to communicate. Endogenous bioactive peptides, often called "neuropeptides," comprise the largest and most diverse class of neuromodulators that mediate crosstalk between the brain and peripheral tissues to regulate physiology and behaviors conserved across the animal kingdom. Neuropeptide signaling can be terminated through receptor binding and internalization or degradation by extracellular enzymes called neuropeptidases. Inactivation by neuropeptidases can shape the dynamics of signaling in vivo by specifying both the duration of signaling and the anatomic path neuropeptides can travel before they are degraded. For most neuropeptides, the identity of the relevant inactivating peptidase(s) is unknown. Here, we established a screening platform in C. elegans utilizing mass spectrometry-based peptidomics to discover neuropeptidases and simultaneously profile the in vivo specificity of these enzymes against each of more than 250 endogenous peptides. We identified NEP-2, a worm ortholog of the mammalian peptidase neprilysin-2, and demonstrated that it regulates specific neuropeptides, including those in the egg-laying circuit. We found that NEP-2 is required in muscle cells to regulate signals from neurons to modulate both behavior and health in the reproductive system. Taken together, our results demonstrate that peptidases, which are an important node of regulation in neuropeptide signaling, affect the dynamics of signaling to impact behavior, physiology, and aging.
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Affiliation(s)
- Jacqueline Y Lo
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Katelyn M Adam
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Avenue, Los Angeles, CA 90089, USA
| | - Jennifer L Garrison
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Avenue, Los Angeles, CA 90089, USA; Cellular and Molecular Pharmacology, University of California, San Francisco, 600 16th Street, San Francisco, CA 94158, USA; Center for Healthy Aging in Women, 8001 Redwood Boulevard, Novato, CA 94945, USA; Productive Health Global Consortium, 8001 Redwood Boulevard, Novato, CA 94945, USA.
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11
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Mountoufaris G, Nair A, Yang B, Kim DW, Vinograd A, Kim S, Linderman SW, Anderson DJ. A line attractor encoding a persistent internal state requires neuropeptide signaling. Cell 2024; 187:5998-6015.e18. [PMID: 39191257 PMCID: PMC11490375 DOI: 10.1016/j.cell.2024.08.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 06/23/2024] [Accepted: 08/07/2024] [Indexed: 08/29/2024]
Abstract
Internal states drive survival behaviors, but their neural implementation is poorly understood. Recently, we identified a line attractor in the ventromedial hypothalamus (VMH) that represents a state of aggressiveness. Line attractors can be implemented by recurrent connectivity or neuromodulatory signaling, but evidence for the latter is scant. Here, we demonstrate that neuropeptidergic signaling is necessary for line attractor dynamics in this system by using cell-type-specific CRISPR-Cas9-based gene editing combined with single-cell calcium imaging. Co-disruption of receptors for oxytocin and vasopressin in adult VMH Esr1+ neurons that control aggression diminished attack, reduced persistent neural activity, and eliminated line attractor dynamics while only slightly reducing overall neural activity and sex- or behavior-specific tuning. These data identify a requisite role for neuropeptidergic signaling in implementing a behaviorally relevant line attractor in mammals. Our approach should facilitate mechanistic studies in neuroscience that bridge different levels of biological function and abstraction.
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Affiliation(s)
- George Mountoufaris
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA
| | - Aditya Nair
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Program in Computation and Neural Systems, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA
| | - Bin Yang
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA
| | - Dong-Wook Kim
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA
| | - Amit Vinograd
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA
| | - Samuel Kim
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA
| | - Scott W Linderman
- Department of Statistics, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA
| | - David J Anderson
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA; Tianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA, USA; Howard Hughes Medical Institute, Pasadena, CA 91001, USA.
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12
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Chardon MK, Wang YC, Garcia M, Besler E, Beauchamp JA, D'Mello M, Powers RK, Heckman CJ. Supercomputer framework for reverse engineering firing patterns of neuron populations to identify their synaptic inputs. eLife 2024; 12:RP90624. [PMID: 39412386 PMCID: PMC11483124 DOI: 10.7554/elife.90624] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2024] Open
Abstract
In this study, we develop new reverse engineering (RE) techniques to identify the organization of the synaptic inputs generating firing patterns of populations of neurons. We tested these techniques in silico to allow rigorous evaluation of their effectiveness, using remarkably extensive parameter searches enabled by massively-parallel computation on supercomputers. We chose spinal motoneurons as our target neural system, since motoneurons process all motor commands and have well-established input-output properties. One set of simulated motoneurons was driven by 300,000+ simulated combinations of excitatory, inhibitory, and neuromodulatory inputs. Our goal was to determine if these firing patterns had sufficient information to allow RE identification of the input combinations. Like other neural systems, the motoneuron input-output system is likely non-unique. This non-uniqueness could potentially limit this RE approach, as many input combinations can produce similar outputs. However, our simulations revealed that firing patterns contained sufficient information to sharply restrict the solution space. Thus, our RE approach successfully generated estimates of the actual simulated patterns of excitation, inhibition, and neuromodulation, with variances accounted for ranging from 75-90%. It was striking that nonlinearities induced in firing patterns by the neuromodulation inputs did not impede RE, but instead generated distinctive features in firing patterns that aided RE. These simulations demonstrate the potential of this form of RE analysis. It is likely that the ever-increasing capacity of supercomputers will allow increasingly accurate RE of neuron inputs from their firing patterns from many neural systems.
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Affiliation(s)
- Matthieu K Chardon
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
- Northwestern-Argonne Institute of Science and Engineering (NAISE)EvanstonUnited States
| | - Y Curtis Wang
- Department of Electrical and Computer Engineering, California State University, Los AngelesLos AngelesUnited States
| | - Marta Garcia
- Argonne Leadership Computing Facility, Argonne National LaboratoryLemontUnited States
| | - Emre Besler
- Department of Electrical Engineering, Northwestern UniversityEvanstonUnited States
| | - J Andrew Beauchamp
- Department of Biomedical Engineering, Northwestern UniversityChicagoUnited States
| | | | - Randall K Powers
- Department of Physiology and Biophysics, University of WashingtonSeattleUnited States
| | - Charles J Heckman
- Department of Neuroscience, Northwestern UniversityChicagoUnited States
- Physical Medicine and Rehabilitation, Shirley Ryan Ability LabChicagoUnited States
- Physical Therapy and Human Movement Sciences, Northwestern UniversityChicagoUnited States
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13
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Phalip A, Netser S, Wagner S. Understanding the neurobiology of social behavior through exploring brain-wide dynamics of neural activity. Neurosci Biobehav Rev 2024; 165:105856. [PMID: 39159735 DOI: 10.1016/j.neubiorev.2024.105856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 08/11/2024] [Accepted: 08/14/2024] [Indexed: 08/21/2024]
Abstract
Social behavior is highly complex and adaptable. It can be divided into multiple temporal stages: detection, approach, and consummatory behavior. Each stage can be further divided into several cognitive and behavioral processes, such as perceiving social cues, evaluating the social and non-social contexts, and recognizing the internal/emotional state of others. Recent studies have identified numerous brain-wide circuits implicated in social behavior and suggested the existence of partially overlapping functional brain networks underlying various types of social and non-social behavior. However, understanding the brain-wide dynamics underlying social behavior remains challenging, and several brain-scale dynamics (macro-, meso-, and micro-scale levels) need to be integrated. Here, we suggest leveraging new tools and concepts to explore social brain networks and integrate those different levels. These include studying the expression of immediate-early genes throughout the entire brain to impartially define the structure of the neuronal networks involved in a given social behavior. Then, network dynamics could be investigated using electrode arrays or multi-channel fiber photometry. Finally, tools like high-density silicon probes and miniscopes can probe neural activity in specific areas and across neuronal populations at the single-cell level.
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Affiliation(s)
- Adèle Phalip
- Sagol Department of Neurobiology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
| | - Shai Netser
- Sagol Department of Neurobiology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel
| | - Shlomo Wagner
- Sagol Department of Neurobiology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel
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14
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Kennedy A, Weissbourd B. Dynamics of neural activity in early nervous system evolution. Curr Opin Behav Sci 2024; 59:101437. [PMID: 39758090 PMCID: PMC11694645 DOI: 10.1016/j.cobeha.2024.101437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2025]
Abstract
New techniques for largescale neural recordings from diverse animals are reshaping comparative systems neuroscience. This growth necessitates fresh conceptual paradigms for comparing neural circuits and activity patterns. Here, we take a systems neuroscience approach to early neural evolution, emphasizing the importance of considering nervous systems as multiply modulated, continuous dynamical systems. We argue that endogenous neural activity likely arose early in evolution to organize behaviors and internal states at the organismal level. This connects to a rich literature on the physiology of endogenous activity in small neural circuits: a field that has built links between data and dynamical systems models. Such models offer mechanistic insight and have robust predictive power. Using these tools, we suggest that the emergence of intrinsically active neurons and periodic dynamics played a critical role in the ascendancy of nervous systems, and that dynamical systems presents an appealing framework for comparing across species.
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Affiliation(s)
- Ann Kennedy
- Department of Neuroscience, Northwestern University Feinberg School of Medicine, Chicago, IL
- Current address: Department of Neuroscience, The Scripps Research Institute, La Jolla, CA
| | - Brandon Weissbourd
- Department of Biology and The Picower Institute for Learning and Memory, MIT, Cambridge, MA
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15
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Fyon A, Franci A, Sacré P, Drion G. Dimensionality reduction of neuronal degeneracy reveals two interfering physiological mechanisms. PNAS NEXUS 2024; 3:pgae415. [PMID: 39359396 PMCID: PMC11443964 DOI: 10.1093/pnasnexus/pgae415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 09/07/2024] [Indexed: 10/04/2024]
Abstract
Neuronal systems maintain stable functions despite large variability in their physiological components. Ion channel expression, in particular, is highly variable in neurons exhibiting similar electrophysiological phenotypes, which raises questions regarding how specific ion channel subsets reliably shape intrinsic properties of neurons. Here, we use detailed conductance-based modeling to explore how stable neuronal function is achieved despite variability in channel composition among neurons. Using dimensionality reduction, we uncover two principal dimensions in the channel conductance space that capture most of the variance of the observed variability. These two dimensions correspond to two sources of variability that originate from distinct physiologically relevant mechanisms underlying the regulation of neuronal activity, providing quantitative insights into how channel composition is linked to the electrophysiological activity of neurons. These insights allow us to understand and design a model-independent, reliable neuromodulation rule for variable neuronal populations.
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Affiliation(s)
- Arthur Fyon
- Department of Electrical Engineering and Computer Science, University of Liège, Liège B-4000, Belgium
| | - Alessio Franci
- Department of Electrical Engineering and Computer Science, University of Liège, Liège B-4000, Belgium
- WEL-T Department, WEL Research Institute, Wavre B-1300, Belgium
| | - Pierre Sacré
- Department of Electrical Engineering and Computer Science, University of Liège, Liège B-4000, Belgium
| | - Guillaume Drion
- Department of Electrical Engineering and Computer Science, University of Liège, Liège B-4000, Belgium
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16
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Lappalainen JK, Tschopp FD, Prakhya S, McGill M, Nern A, Shinomiya K, Takemura SY, Gruntman E, Macke JH, Turaga SC. Connectome-constrained networks predict neural activity across the fly visual system. Nature 2024; 634:1132-1140. [PMID: 39261740 PMCID: PMC11525180 DOI: 10.1038/s41586-024-07939-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 08/09/2024] [Indexed: 09/13/2024]
Abstract
We can now measure the connectivity of every neuron in a neural circuit1-9, but we cannot measure other biological details, including the dynamical characteristics of each neuron. The degree to which measurements of connectivity alone can inform the understanding of neural computation is an open question10. Here we show that with experimental measurements of only the connectivity of a biological neural network, we can predict the neural activity underlying a specified neural computation. We constructed a model neural network with the experimentally determined connectivity for 64 cell types in the motion pathways of the fruit fly optic lobe1-5 but with unknown parameters for the single-neuron and single-synapse properties. We then optimized the values of these unknown parameters using techniques from deep learning11, to allow the model network to detect visual motion12. Our mechanistic model makes detailed, experimentally testable predictions for each neuron in the connectome. We found that model predictions agreed with experimental measurements of neural activity across 26 studies. Our work demonstrates a strategy for generating detailed hypotheses about the mechanisms of neural circuit function from connectivity measurements. We show that this strategy is more likely to be successful when neurons are sparsely connected-a universally observed feature of biological neural networks across species and brain regions.
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Affiliation(s)
- Janne K Lappalainen
- Machine Learning in Science, Tübingen University, Tübingen, Germany
- Tübingen AI Center, Tübingen, Germany
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Fabian D Tschopp
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Sridhama Prakhya
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Mason McGill
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Computation and Neural Systems, California Institute of Technology, Pasadena, CA, USA
| | - Aljoscha Nern
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Kazunori Shinomiya
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Shin-Ya Takemura
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Eyal Gruntman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Dept of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Jakob H Macke
- Machine Learning in Science, Tübingen University, Tübingen, Germany
- Tübingen AI Center, Tübingen, Germany
- Max Planck Institute for Intelligent Systems, Tübingen, Germany
| | - Srinivas C Turaga
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
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17
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Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CH, Yu S, Kim JS, Dorkenwald S, Matsliah A, Schlegel P, Yu SC, McKellar CE, Sterling A, Costa M, Eichler K, Bates AS, Eckstein N, Funke J, Jefferis GSXE, Murthy M, Bidaye SS, Hampel S, Seeds AM, Scott K. A Drosophila computational brain model reveals sensorimotor processing. Nature 2024; 634:210-219. [PMID: 39358519 PMCID: PMC11446845 DOI: 10.1038/s41586-024-07763-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 06/27/2024] [Indexed: 10/04/2024]
Abstract
The recent assembly of the adult Drosophila melanogaster central brain connectome, containing more than 125,000 neurons and 50 million synaptic connections, provides a template for examining sensory processing throughout the brain1,2. Here we create a leaky integrate-and-fire computational model of the entire Drosophila brain, on the basis of neural connectivity and neurotransmitter identity3, to study circuit properties of feeding and grooming behaviours. We show that activation of sugar-sensing or water-sensing gustatory neurons in the computational model accurately predicts neurons that respond to tastes and are required for feeding initiation4. In addition, using the model to activate neurons in the feeding region of the Drosophila brain predicts those that elicit motor neuron firing5-a testable hypothesis that we validate by optogenetic activation and behavioural studies. Activating different classes of gustatory neurons in the model makes accurate predictions of how several taste modalities interact, providing circuit-level insight into aversive and appetitive taste processing. Additionally, we applied this model to mechanosensory circuits and found that computational activation of mechanosensory neurons predicts activation of a small set of neurons comprising the antennal grooming circuit, and accurately describes the circuit response upon activation of different mechanosensory subtypes6-10. Our results demonstrate that modelling brain circuits using only synapse-level connectivity and predicted neurotransmitter identity generates experimentally testable hypotheses and can describe complete sensorimotor transformations.
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Affiliation(s)
- Philip K Shiu
- Department of Molecular and Cell Biology and Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA.
- Eon Systems, San Francisco, CA, USA.
| | - Gabriella R Sterne
- Department of Molecular and Cell Biology and Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
- University of Rochester Medical Center, Department of Biomedical Genetics, New York, NY, USA
| | - Nico Spiller
- Max Planck Florida Institute for Neuroscience, Jupiter, FL, USA
| | | | - Andrea Sandoval
- Department of Molecular and Cell Biology and Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
| | - Joie Zhou
- Department of Molecular and Cell Biology and Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
| | - Neha Simha
- Department of Molecular and Cell Biology and Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
| | - Chan Hyuk Kang
- Department of Biological Sciences, Sungkyunkwan University, Suwon, South Korea
| | - Seongbong Yu
- Department of Biological Sciences, Sungkyunkwan University, Suwon, South Korea
| | - Jinseop S Kim
- Department of Biological Sciences, Sungkyunkwan University, Suwon, South Korea
| | - Sven Dorkenwald
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Computer Science Department, Princeton University, Princeton, NJ, USA
| | - Arie Matsliah
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Philipp Schlegel
- Department of Zoology, University of Cambridge, Cambridge, UK
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK
| | - Szi-Chieh Yu
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Claire E McKellar
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Amy Sterling
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Marta Costa
- Department of Zoology, University of Cambridge, Cambridge, UK
| | - Katharina Eichler
- Computer Science Department, Princeton University, Princeton, NJ, USA
| | - Alexander Shakeel Bates
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK
- Centre for Neural Circuits and Behaviour, The University of Oxford, Oxford, UK
- Department of Neurobiology and Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA
| | | | - Jan Funke
- HHMI Janelia Research Campus, Ashburn, VA, USA
| | - Gregory S X E Jefferis
- Department of Zoology, University of Cambridge, Cambridge, UK
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK
| | - Mala Murthy
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Salil S Bidaye
- Max Planck Florida Institute for Neuroscience, Jupiter, FL, USA
| | - Stefanie Hampel
- Institute of Neurobiology, University of Puerto Rico-Medical Sciences Campus, San Juan, Puerto Rico
| | - Andrew M Seeds
- Institute of Neurobiology, University of Puerto Rico-Medical Sciences Campus, San Juan, Puerto Rico
| | - Kristin Scott
- Department of Molecular and Cell Biology and Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
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18
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Fenstermacher SJ, Vonasek A, Gattuso H, Chaimowitz C, Dymecki SM, Jessell TM, Dasen JS. Potentiation of active locomotor state by spinal-projecting serotonergic neurons. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.26.615260. [PMID: 39386605 PMCID: PMC11463418 DOI: 10.1101/2024.09.26.615260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 10/12/2024]
Abstract
Animals produce diverse motor actions that enable expression of context-appropriate behaviors. Neuromodulators facilitate behavioral flexibility by altering the temporal dynamics and output of neural circuits. Discrete populations of serotonergic (5-HT) neurons target circuits in the brainstem and spinal cord, but their role in the control of motor behavior is unclear. Here we define the pre- and post-synaptic organization of the spinal-projecting serotonergic system and define a role in locomotor control. We show that while forebrain-targeting 5-HT neurons decrease their activity during locomotion, subpopulations of spinal projecting neurons increase their activity in a context-dependent manner. Optogenetic activation of ventrally projecting 5-HT neurons does not trigger initiation of movement, but rather enhances the speed and duration of ongoing locomotion over extended time scales. These findings indicate that the descending serotonergic system potentiates locomotor output and demonstrate a role for serotonergic neurons in modulating the temporal dynamics of motor circuits.
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Affiliation(s)
- Sara J. Fenstermacher
- Neuroscience Institute, Department of Neuroscience and Physiology, NYU School of Medicine
| | - Ann Vonasek
- Neuroscience Institute, Department of Neuroscience and Physiology, NYU School of Medicine
| | - Hannah Gattuso
- Neuroscience Institute, Department of Neuroscience and Physiology, NYU School of Medicine
| | - Corryn Chaimowitz
- Neuroscience Institute, Department of Neuroscience and Physiology, NYU School of Medicine
| | | | | | - Jeremy S. Dasen
- Neuroscience Institute, Department of Neuroscience and Physiology, NYU School of Medicine
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19
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Ellingson PJ, Shams YO, Parker JR, Calabrese RL, Cymbalyuk GS. Multistability of bursting rhythms in a half-center oscillator and the protective effects of synaptic inhibition. Front Cell Neurosci 2024; 18:1395026. [PMID: 39355175 PMCID: PMC11442309 DOI: 10.3389/fncel.2024.1395026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Accepted: 07/08/2024] [Indexed: 10/03/2024] Open
Abstract
For animals to meet environmental challenges, the activity patterns of specialized oscillatory neural circuits, central pattern generators (CPGs), controlling rhythmic movements like breathing and locomotion, are adjusted by neuromodulation. As a representative example, the leech heartbeat is controlled by a CPG driven by two pairs of mutually inhibitory interneurons, heart interneuron (HN) half-center oscillators (HCO). Experiments and modeling indicate that neuromodulation of HCO navigates this CPG between dysfunctional regimes by employing a co-regulating inverted relation; reducing Na+/K+ pump current and increasing hyperpolarization-activated (h-) current. Simply reducing pump activity or increasing h-current leads to either seizure-like bursting or an asymmetric bursting dysfunctional regime, respectively. Here, we demonstrate through modeling that, alongside this coregulation path, a new bursting regime emerges. Both regimes fulfill the criteria for functional bursting activity. Although the cycle periods and burst durations of these patterns are roughly the same, the new one exhibits an intra-burst spike frequency that is twice as high as the other. This finding suggests that neuromodulation could introduce additional functional regimes with higher spike frequency, and thus more effective synaptic transmission to motor neurons. We found that this new regime co-exists with the original bursting. The HCO can be switched between them by a short pulse of excitatory or inhibitory conductance. In this domain of coexisting functional patterns, an isolated cell model exhibits only one regime, a severely dysfunctional plateau-containing, seizure-like activity. This aligns with widely reported notion that deficiency of inhibition can cause seizures and other dysfunctional neural activities. We show that along the coregulation path of neuromodulation, the high excitability of the single HNs induced by myomodulin is harnessed by mutually inhibitory synaptic interactions of the HCO into the functional bursting pattern.
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Affiliation(s)
- Parker J. Ellingson
- Neuroscience Institute, Georgia State University, Atlanta, GA, United States
| | - Yousif O. Shams
- Neuroscience Institute, Georgia State University, Atlanta, GA, United States
| | - Jessica R. Parker
- Neuroscience Institute, Georgia State University, Atlanta, GA, United States
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20
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Fournier Z, Alonso LM, Marder E. Circuit function is more robust to changes in synaptic than intrinsic conductances. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.03.611139. [PMID: 39282429 PMCID: PMC11398330 DOI: 10.1101/2024.09.03.611139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
Abstract
Circuit function results from both intrinsic conductances of network neurons and the synaptic conductances that connect them. In models of neural circuits, different combinations of maximal conductances can give rise to similar activity. We compared the robustness of a neural circuit to changes in their intrinsic versus synaptic conductances. To address this, we performed a sensitivity analysis on a population of conductance-based models of the pyloric network from the crustacean stomatogastric ganglion (STG). The model network consists of three neurons with nine currents: a sodium current (Na), three potassium currents (Kd, KCa, A-type), two calcium currents (CaS and CaT), a hyperpolarization-activated current (H), a non-voltage-gated leak current (leak), and a neuromodulatory current (MI). The model cells are connected by seven synapses of two types, glutamatergic and cholinergic. We produced one hundred models of the pyloric network that displayed similar activities with values of maximal conductances distributed over wide ranges. We evaluated the robustness of each model to changes in their maximal conductances. We found that individual models have different sensitivities to changes in their maximal conductances, both in their intrinsic and synaptic conductances. As expected the models become less robust as the extent of the changes increase. Despite quantitative differences in their robustness, we found that in all cases, the model networks are more sensitive to the perturbation of their intrinsic conductances than their synaptic conductances.
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Affiliation(s)
| | - Leandro M. Alonso
- Volen Center and Biology Department, Brandeis University, Waltham, MA, 02454, USA
| | - Eve Marder
- Volen Center and Biology Department, Brandeis University, Waltham, MA, 02454, USA
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21
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Schneider AC, Cronin E, Daur N, Bucher D, Nadim F. Convergent Comodulation Reduces Interindividual Variability of Circuit Output. eNeuro 2024; 11:ENEURO.0167-24.2024. [PMID: 39134416 PMCID: PMC11403100 DOI: 10.1523/eneuro.0167-24.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 06/18/2024] [Accepted: 07/03/2024] [Indexed: 08/21/2024] Open
Abstract
Ionic current levels of identified neurons vary substantially across individual animals. Yet, under similar conditions, neural circuit output can be remarkably similar, as evidenced in many motor systems. All neural circuits are influenced by multiple neuromodulators, which provide flexibility to their output. These neuromodulators often overlap in their actions by modulating the same channel type or synapse, yet have neuron-specific actions resulting from distinct receptor expression. Because of this different receptor expression pattern, in the presence of multiple convergent neuromodulators, a common downstream target would be activated more uniformly in circuit neurons across individuals. We therefore propose that a baseline tonic (non-saturating) level of comodulation by convergent neuromodulators can reduce interindividual variability of circuit output. We tested this hypothesis in the pyloric circuit of the crab, Cancer borealis Multiple excitatory neuropeptides converge to activate the same voltage-gated current in this circuit, but different subsets of pyloric neurons have receptors for each peptide. We quantified the interindividual variability of the unmodulated pyloric circuit output by measuring the activity phases, cycle frequency, and intraburst spike number and frequency. We then examined the variability in the presence of different combinations and concentrations of three neuropeptides. We found that at mid-level concentration (30 nM) but not at near-threshold (1 nM) or saturating (1 µM) concentrations, comodulation by multiple neuropeptides reduced the circuit output variability. Notably, the interindividual variability of response properties of an isolated neuron was not reduced by comodulation, suggesting that the reduction of output variability may emerge as a network effect.
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22
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Schapiro K, Marder E. Resilience of circuits to environmental challenge. Curr Opin Neurobiol 2024; 87:102885. [PMID: 38857559 PMCID: PMC11316650 DOI: 10.1016/j.conb.2024.102885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 04/11/2024] [Accepted: 05/20/2024] [Indexed: 06/12/2024]
Abstract
Animals of all kinds evolved to deal with anticipated and unanticipated changes in a variety of features in their environments. Consequently, all environmental perturbations, adaptations, and acclimation involve a myriad of factors that, together, contribute to environmental resilience. New work highlights the importance of neuromodulation in the control of environmental resilience, and illustrates that different components of the nervous system may be differentially resilient to environmental perturbations. Climate change is today pushing animals to deal with previously unanticipated environmental challenges, and therefore understanding the complex biology of adaptation and acclimation to various environmental conditions takes on new urgency.
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Affiliation(s)
- Kyra Schapiro
- Volen Center and Biology Department, Brandeis University, Waltham, MA 02454, USA
| | - Eve Marder
- Volen Center and Biology Department, Brandeis University, Waltham, MA 02454, USA.
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23
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Costacurta JC, Bhandarkar S, Zoltowski DM, Linderman SW. Structured flexibility in recurrent neural networks via neuromodulation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.26.605315. [PMID: 39091788 PMCID: PMC11291173 DOI: 10.1101/2024.07.26.605315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
The goal of theoretical neuroscience is to develop models that help us better understand biological intelligence. Such models range broadly in complexity and biological detail. For example, task-optimized recurrent neural networks (RNNs) have generated hypotheses about how the brain may perform various computations, but these models typically assume a fixed weight matrix representing the synaptic connectivity between neurons. From decades of neuroscience research, we know that synaptic weights are constantly changing, controlled in part by chemicals such as neuromodulators. In this work we explore the computational implications of synaptic gain scaling, a form of neuromodulation, using task-optimized low-rank RNNs. In our neuromodulated RNN (NM-RNN) model, a neuromodulatory subnetwork outputs a low-dimensional neuromodulatory signal that dynamically scales the low-rank recurrent weights of an output-generating RNN. In empirical experiments, we find that the structured flexibility in the NM-RNN allows it to both train and generalize with a higher degree of accuracy than low-rank RNNs on a set of canonical tasks. Additionally, via theoretical analyses we show how neuromodulatory gain scaling endows networks with gating mechanisms commonly found in artificial RNNs. We end by analyzing the low-rank dynamics of trained NM-RNNs, to show how task computations are distributed.
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Affiliation(s)
- Julia C Costacurta
- Wu Tsai Neurosciences Institute, Stanford, CA, USA
- Department of Electrical Engineering, Stanford, CA, USA
| | | | - David M Zoltowski
- Wu Tsai Neurosciences Institute, Stanford, CA, USA
- Department of Statistics, Stanford University, Stanford, CA, USA
| | - Scott W Linderman
- Wu Tsai Neurosciences Institute, Stanford, CA, USA
- Department of Statistics, Stanford University, Stanford, CA, USA
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24
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Fernández JG, Keemink S, van Gerven M. Gradient-free training of recurrent neural networks using random perturbations. Front Neurosci 2024; 18:1439155. [PMID: 39050673 PMCID: PMC11267880 DOI: 10.3389/fnins.2024.1439155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 06/25/2024] [Indexed: 07/27/2024] Open
Abstract
Recurrent neural networks (RNNs) hold immense potential for computations due to their Turing completeness and sequential processing capabilities, yet existing methods for their training encounter efficiency challenges. Backpropagation through time (BPTT), the prevailing method, extends the backpropagation (BP) algorithm by unrolling the RNN over time. However, this approach suffers from significant drawbacks, including the need to interleave forward and backward phases and store exact gradient information. Furthermore, BPTT has been shown to struggle to propagate gradient information for long sequences, leading to vanishing gradients. An alternative strategy to using gradient-based methods like BPTT involves stochastically approximating gradients through perturbation-based methods. This learning approach is exceptionally simple, necessitating only forward passes in the network and a global reinforcement signal as feedback. Despite its simplicity, the random nature of its updates typically leads to inefficient optimization, limiting its effectiveness in training neural networks. In this study, we present a new approach to perturbation-based learning in RNNs whose performance is competitive with BPTT, while maintaining the inherent advantages over gradient-based learning. To this end, we extend the recently introduced activity-based node perturbation (ANP) method to operate in the time domain, leading to more efficient learning and generalization. We subsequently conduct a range of experiments to validate our approach. Our results show similar performance, convergence time and scalability when compared to BPTT, strongly outperforming standard node perturbation and weight perturbation methods. These findings suggest that perturbation-based learning methods offer a versatile alternative to gradient-based methods for training RNNs which can be ideally suited for neuromorphic computing applications.
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Affiliation(s)
- Jesús García Fernández
- Department of Machine Learning and Neural Computing, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
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Negrón A, Getz MP, Handy G, Doiron B. The mechanics of correlated variability in segregated cortical excitatory subnetworks. Proc Natl Acad Sci U S A 2024; 121:e2306800121. [PMID: 38959037 PMCID: PMC11252788 DOI: 10.1073/pnas.2306800121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 04/03/2024] [Indexed: 07/04/2024] Open
Abstract
Understanding the genesis of shared trial-to-trial variability in neuronal population activity within the sensory cortex is critical to uncovering the biological basis of information processing in the brain. Shared variability is often a reflection of the structure of cortical connectivity since it likely arises, in part, from local circuit inputs. A series of experiments from segregated networks of (excitatory) pyramidal neurons in the mouse primary visual cortex challenge this view. Specifically, the across-network correlations were found to be larger than predicted given the known weak cross-network connectivity. We aim to uncover the circuit mechanisms responsible for these enhanced correlations through biologically motivated cortical circuit models. Our central finding is that coupling each excitatory subpopulation with a specific inhibitory subpopulation provides the most robust network-intrinsic solution in shaping these enhanced correlations. This result argues for the existence of excitatory-inhibitory functional assemblies in early sensory areas which mirror not just response properties but also connectivity between pyramidal cells. Furthermore, our findings provide theoretical support for recent experimental observations showing that cortical inhibition forms structural and functional subnetworks with excitatory cells, in contrast to the classical view that inhibition is a nonspecific blanket suppression of local excitation.
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Affiliation(s)
- Alex Negrón
- Department of Applied Mathematics, Illinois Institute of Technology, Chicago, IL60616
- Grossman Center for Quantitative Biology and Human Behavior, University of Chicago, Chicago, IL60637
| | - Matthew P. Getz
- Grossman Center for Quantitative Biology and Human Behavior, University of Chicago, Chicago, IL60637
- Department of Neurobiology, University of Chicago, Chicago, IL60637
- Department of Statistics, University of Chicago, Chicago, IL60637
| | - Gregory Handy
- Grossman Center for Quantitative Biology and Human Behavior, University of Chicago, Chicago, IL60637
- Department of Neurobiology, University of Chicago, Chicago, IL60637
- Department of Statistics, University of Chicago, Chicago, IL60637
| | - Brent Doiron
- Grossman Center for Quantitative Biology and Human Behavior, University of Chicago, Chicago, IL60637
- Department of Neurobiology, University of Chicago, Chicago, IL60637
- Department of Statistics, University of Chicago, Chicago, IL60637
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MacDonald A, Hebling A, Wei XP, Yackle K. The breath shape controls intonation of mouse vocalizations. eLife 2024; 13:RP93079. [PMID: 38963785 PMCID: PMC11223766 DOI: 10.7554/elife.93079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/06/2024] Open
Abstract
Intonation in speech is the control of vocal pitch to layer expressive meaning to communication, like increasing pitch to indicate a question. Also, stereotyped patterns of pitch are used to create distinct sounds with different denotations, like in tonal languages and, perhaps, the 10 sounds in the murine lexicon. A basic tone is created by exhalation through a constricted laryngeal voice box, and it is thought that more complex utterances are produced solely by dynamic changes in laryngeal tension. But perhaps, the shifting pitch also results from altering the swiftness of exhalation. Consistent with the latter model, we describe that intonation in most vocalization types follows deviations in exhalation that appear to be generated by the re-activation of the cardinal breathing muscle for inspiration. We also show that the brainstem vocalization central pattern generator, the iRO, can create this breath pattern. Consequently, ectopic activation of the iRO not only induces phonation, but also the pitch patterns that compose most of the vocalizations in the murine lexicon. These results reveal a novel brainstem mechanism for intonation.
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Affiliation(s)
- Alastair MacDonald
- Department of Physiology, University of California-San FranciscoSan FranciscoUnited States
| | - Alina Hebling
- Neuroscience Graduate Program, University of California-San FranciscoSan FranciscoUnited States
| | - Xin Paul Wei
- Department of Physiology, University of California-San FranciscoSan FranciscoUnited States
- Biomedical Sciences Graduate Program, University of California-San FranciscoSan FranciscoUnited States
| | - Kevin Yackle
- Department of Physiology, University of California-San FranciscoSan FranciscoUnited States
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Fahoum SRH, Blitz DM. Neuropeptide modulation of bidirectional internetwork synapses. J Neurophysiol 2024; 132:184-205. [PMID: 38776457 DOI: 10.1152/jn.00149.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 05/20/2024] [Accepted: 05/21/2024] [Indexed: 05/25/2024] Open
Abstract
Oscillatory networks underlying rhythmic motor behaviors, and sensory and complex neural processing, are flexible, even in their neuronal composition. Neuromodulatory inputs enable neurons to switch participation between networks or participate in multiple networks simultaneously. Neuromodulation of internetwork synapses can both recruit and coordinate a switching neuron in a second network. We previously identified an example in which a neuron is recruited into dual-network activity via peptidergic modulation of intrinsic properties. We now ask whether the same neuropeptide also modulates internetwork synapses for internetwork coordination. The crab (Cancer borealis) stomatogastric nervous system contains two well-defined feeding-related networks (pyloric, food filtering, ∼1 Hz; gastric mill, food chewing, ∼0.1 Hz). The projection neuron MCN5 uses the neuropeptide Gly1-SIFamide to recruit the pyloric-only lateral posterior gastric (LPG) neuron into dual pyloric- plus gastric mill-timed bursting via modulation of LPG's intrinsic properties. Descending input is not required for a coordinated rhythm, thus intranetwork synapses between LPG and its second network must underlie coordination among these neurons. However, synapses between LPG and gastric mill neurons have not been documented. Using two-electrode voltage-clamp recordings, we found that graded synaptic currents between LPG and gastric mill neurons (lateral gastric, inferior cardiac, and dorsal gastric) were primarily negligible in saline, but were enhanced by Gly1-SIFamide. Furthermore, LPG and gastric mill neurons entrain each other during Gly1-SIFamide application, indicating bidirectional, functional connectivity. Thus, a neuropeptide mediates neuronal switching through parallel actions, modulating intrinsic properties for recruitment into a second network and as shown here, also modulating bidirectional internetwork synapses for coordination.NEW & NOTEWORTHY Neuromodulation can enable neurons to simultaneously coordinate with separate networks. Both recruitment into, and coordination with, a second network can occur via modulation of internetwork synapses. Alternatively, recruitment can occur via modulation of intrinsic ionic currents. We find that the same neuropeptide previously determined to modulate intrinsic currents also modulates bidirectional internetwork synapses that are typically ineffective. Thus, complementary modulatory peptide actions enable recruitment and coordination of a neuron into a second network.
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Affiliation(s)
- Savanna-Rae H Fahoum
- Department of Biology and Center for Neuroscience and Behavior, Miami University, Oxford, Ohio, United States
| | - Dawn M Blitz
- Department of Biology and Center for Neuroscience and Behavior, Miami University, Oxford, Ohio, United States
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Shibata Y, Toji N, Wang H, Go Y, Wada K. Expansion of learning capacity elicited by interspecific hybridization. SCIENCE ADVANCES 2024; 10:eadn3409. [PMID: 38896617 PMCID: PMC11186503 DOI: 10.1126/sciadv.adn3409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 05/14/2024] [Indexed: 06/21/2024]
Abstract
Learned behavior, a fundamental adaptive trait in fluctuating environments, is shaped by species-specific constraints. This phenomenon is evident in songbirds, which acquire their species-specific songs through vocal learning. To explore the neurogenetic mechanisms underlying species-specific song learning, we generated F1 hybrid songbirds by crossing Taeniopygia guttata with Aidemosyne modesta. These F1 hybrids demonstrate expanded learning capacities, adeptly mimicking songs from both parental species and other heterospecific songs more extensively than their parental counterparts. Despite the conserved size of brain regions and neuron numbers in the neural circuits for song learning and production, single-cell transcriptomics reveals distinctive transcriptional characteristics in the F1 hybrids, especially in vocal-motor projection neurons. These neurons exhibit enrichment for nonadditively expressed genes, particularly those related to ion channel activity and cell adhesion, which are associated with the degree of song learning among F1 individuals. Our findings provide insights into the emergence of altered learning capabilities through hybridization, linked to cell type-specific transcriptional changes.
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Affiliation(s)
- Yukino Shibata
- Graduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan
- Research Fellowship for Young Scientists of the Japan Society for the Promotion of Science, Sapporo 060-0810, Japan
| | - Noriyuki Toji
- Research Fellowship for Young Scientists of the Japan Society for the Promotion of Science, Sapporo 060-0810, Japan
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Hongdi Wang
- Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa 904-0497, Japan
| | - Yasuhiro Go
- Graduate School of Information Science, University of Hyogo, Kobe 650-0047, Japan
- Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences (NINS), Okazaki 444-8585, Japan
- National Institute for Physiological Sciences (NIPS), National Institutes of Natural Sciences (NINS), Okazaki 444-8585, Japan
| | - Kazuhiro Wada
- Graduate School of Life Science, Hokkaido University, Sapporo 060-0810, Japan
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
- Research and Education Center for Brain Science, Hokkaido University, Sapporo 060-8638, Japan
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Romer SH, Miller KM, Sonner MJ, Ethridge VT, Gargas NM, Rohan JG. Changes in motor behavior and lumbar motoneuron morphology following repeated chlorpyrifos exposure in rats. PLoS One 2024; 19:e0305173. [PMID: 38875300 PMCID: PMC11178230 DOI: 10.1371/journal.pone.0305173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Accepted: 05/26/2024] [Indexed: 06/16/2024] Open
Abstract
Chlorpyrifos is an organophosphate pesticide associated with numerous health effects including motor performance decrements. While many studies have focused on the health effects following acute chlorpyrifos poisonings, almost no studies have examined the effects on motoneurons following occupational-like exposures. The main objective of this study was to examine the broad effects of repeated occupational-like chlorpyrifos exposures on spinal motoneuron soma size relative to motor activity. To execute our objective, adult rats were exposed to chlorpyrifos via oral gavage once a day, five days a week for two weeks. Chlorpyrifos exposure effects were assessed either three days or two months following the last exposure. Three days following the last repeated chlorpyrifos exposure, there were transient effects in open-field motor activity and plasma cholinesterase activity levels. Two months following the chlorpyrifos exposures, there were delayed effects in sensorimotor gating, pro-inflammatory cytokines and spinal lumbar motoneuron soma morphology. Overall, these results offer support that subacute repeated occupational-like chlorpyrifos exposures have both short-term and longer-term effects in motor activity, inflammation, and central nervous system mechanisms.
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Affiliation(s)
- Shannon H Romer
- Environmental Health Effects Laboratory, Naval Medical Research Unit Dayton, Wright-Patterson AFB, Dayton, OH, United States of America
- Leidos, Reston, VA, United States of America
| | - Kaitlyn M Miller
- Environmental Health Effects Laboratory, Naval Medical Research Unit Dayton, Wright-Patterson AFB, Dayton, OH, United States of America
- Oak Ridge Institute for Science and Education, Oak Ridge, TN, United States of America
- Department of Neuroscience, Cell Biology and Physiology, Wright State University, Dayton, OH, United States of America
| | - Martha J Sonner
- Environmental Health Effects Laboratory, Naval Medical Research Unit Dayton, Wright-Patterson AFB, Dayton, OH, United States of America
- Leidos, Reston, VA, United States of America
| | - Victoria T Ethridge
- Environmental Health Effects Laboratory, Naval Medical Research Unit Dayton, Wright-Patterson AFB, Dayton, OH, United States of America
- Leidos, Reston, VA, United States of America
| | - Nathan M Gargas
- Environmental Health Effects Laboratory, Naval Medical Research Unit Dayton, Wright-Patterson AFB, Dayton, OH, United States of America
| | - Joyce G Rohan
- Environmental Health Effects Laboratory, Naval Medical Research Unit Dayton, Wright-Patterson AFB, Dayton, OH, United States of America
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Goolsby BC, Smith EJ, Muratore IB, Coto ZN, Muscedere ML, Traniello JFA. Differential Neuroanatomical, Neurochemical, and Behavioral Impacts of Early-Age Isolation in a Eusocial Insect. BRAIN, BEHAVIOR AND EVOLUTION 2024; 99:171-183. [PMID: 38857586 DOI: 10.1159/000539546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 05/21/2024] [Indexed: 06/12/2024]
Abstract
INTRODUCTION Social experience early in life appears to be necessary for the development of species-typical behavior. Although isolation during critical periods of maturation has been shown to impact behavior by altering gene expression and brain development in invertebrates and vertebrates, workers of some ant species appear resilient to social deprivation and other neurobiological challenges that occur during senescence or due to loss of sensory input. It is unclear if and to what degree neuroanatomy, neurochemistry, and behavior will show deficiencies if social experience in the early adult life of worker ants is compromised. METHODS We reared newly eclosed adult workers of Camponotus floridanus under conditions of social isolation for 2-53 days, quantified brain compartment volumes, recorded biogenic amine levels in individual brains, and evaluated movement and behavioral performance to compare the neuroanatomy, neurochemistry, brood-care behavior, and foraging (predatory behavior) of isolated workers with that of workers experiencing natural social contact after adult eclosion. RESULTS We found that the volume of the antennal lobe, which processes olfactory inputs, was significantly reduced in workers isolated for an average of 40 days, whereas the size of the mushroom bodies, centers of higher-order sensory processing, increased after eclosion and was not significantly different from controls. Titers of the neuromodulators serotonin, dopamine, and octopamine remained stable and were not significantly different in isolation treatments and controls. Brood care, predation, and overall movement were reduced in workers lacking social contact early in life. CONCLUSION These results suggest that the behavioral development of isolated workers of C. floridanus is specifically impacted by a reduction in the size of the antennal lobe. Task performance and locomotor ability therefore appear to be sensitive to a loss of social contact through a reduction of olfactory processing ability rather than change in the size of the mushroom bodies, which serve important functions in learning and memory, or the central complex, which controls movement.
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Affiliation(s)
- Billie C Goolsby
- Department of Biology, Boston University, Boston, Massachusetts, USA
- Department of Biology, Stanford University, Stanford, California, USA
| | - E Jordan Smith
- Department of Biology, Boston University, Boston, Massachusetts, USA
| | - Isabella B Muratore
- Department of Biology, Boston University, Boston, Massachusetts, USA
- Chemistry Department, United States Naval Academy, Annapolis, Maryland, USA
| | - Zach N Coto
- Department of Biology, Boston University, Boston, Massachusetts, USA
| | - Mario L Muscedere
- Department of Biology, Boston University, Boston, Massachusetts, USA
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Haley JA, Chalasani SH. C. elegans foraging as a model for understanding the neuronal basis of decision-making. Cell Mol Life Sci 2024; 81:252. [PMID: 38849591 PMCID: PMC11335288 DOI: 10.1007/s00018-024-05223-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 03/27/2024] [Accepted: 03/30/2024] [Indexed: 06/09/2024]
Abstract
Animals have evolved to seek, select, and exploit food sources in their environment. Collectively termed foraging, these ubiquitous behaviors are necessary for animal survival. As a foundation for understanding foraging, behavioral ecologists established early theoretical and mathematical frameworks which have been subsequently refined and supported by field and laboratory studies of foraging animals. These simple models sought to explain how animals decide which strategies to employ when locating food, what food items to consume, and when to explore the environment for new food sources. These foraging decisions involve integration of prior experience with multimodal sensory information about the animal's current environment and internal state. We suggest that the nematode Caenorhabditis elegans is well-suited for a high-resolution analysis of complex goal-oriented behaviors such as foraging. We focus our discussion on behavioral studies highlighting C. elegans foraging on bacteria and summarize what is known about the underlying neuronal and molecular pathways. Broadly, we suggest that this simple model system can provide a mechanistic understanding of decision-making and present additional avenues for advancing our understanding of complex behavioral processes.
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Affiliation(s)
- Jessica A Haley
- Neurosciences Graduate Program, University of California San Diego, La Jolla, CA, 92093, USA
- Molecular Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, 92037, USA
| | - Sreekanth H Chalasani
- Molecular Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.
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Zhang Y, Karadas M, Liu J, Gu X, Vöröslakos M, Li Y, Tsien RW, Buzsáki G. Interaction of acetylcholine and oxytocin neuromodulation in the hippocampus. Neuron 2024; 112:1862-1875.e5. [PMID: 38537642 PMCID: PMC11156550 DOI: 10.1016/j.neuron.2024.02.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 01/17/2024] [Accepted: 02/29/2024] [Indexed: 06/09/2024]
Abstract
A postulated role of subcortical neuromodulators is to control brain states. Mechanisms by which different neuromodulators compete or cooperate at various temporal scales remain an open question. We investigated the interaction of acetylcholine (ACh) and oxytocin (OXT) at slow and fast timescales during various brain states. Although these neuromodulators fluctuated in parallel during NREM packets, transitions from NREM to REM were characterized by a surge of ACh but a continued decrease of OXT. OXT signaling lagged behind ACh. High ACh was correlated with population synchrony and gamma oscillations during active waking, whereas minimum ACh predicts sharp-wave ripples (SPW-Rs). Optogenetic control of ACh and OXT neurons confirmed the active role of these neuromodulators in the observed correlations. Synchronous hippocampal activity consistently reduced OXT activity, whereas inactivation of the lateral septum-hypothalamus path attenuated this effect. Our findings demonstrate how cooperative actions of these neuromodulators allow target circuits to perform specific functions.
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Affiliation(s)
| | | | | | - Xinyi Gu
- Neuroscience Institute, New York, NY, USA
| | | | - Yulong Li
- School of Life Science, Peking University, Beijing, China
| | - Richard W Tsien
- Neuroscience Institute, New York, NY, USA; Department of Neurology, Langone Medical Center, New York University, New York, NY 10016, USA; Center for Neural Science, New York University, New York, NY 10003, USA
| | - György Buzsáki
- Neuroscience Institute, New York, NY, USA; Department of Neurology, Langone Medical Center, New York University, New York, NY 10016, USA; Center for Neural Science, New York University, New York, NY 10003, USA.
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Kondo T, Okada Y, Shizuya S, Yamaguchi N, Hatakeyama S, Maruyama K. Neuroimmune modulation by tryptophan derivatives in neurological and inflammatory disorders. Eur J Cell Biol 2024; 103:151418. [PMID: 38729083 DOI: 10.1016/j.ejcb.2024.151418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 05/02/2024] [Accepted: 05/03/2024] [Indexed: 05/12/2024] Open
Abstract
The nervous and immune systems are highly developed, and each performs specialized physiological functions. However, they work together, and their dysfunction is associated with various diseases. Specialized molecules, such as neurotransmitters, cytokines, and more general metabolites, are essential for the appropriate regulation of both systems. Tryptophan, an essential amino acid, is converted into functional molecules such as serotonin and kynurenine, both of which play important roles in the nervous and immune systems. The role of kynurenine metabolites in neurodegenerative and psychiatric diseases has recently received particular attention. Recently, we found that hyperactivity of the kynurenine pathway is a critical risk factor for septic shock. In this review, we first outline neuroimmune interactions and tryptophan derivatives and then summarized the changes in tryptophan metabolism in neurological disorders. Finally, we discuss the potential of tryptophan derivatives as therapeutic targets for neuroimmune disorders.
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Affiliation(s)
- Takeshi Kondo
- Department of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Hokkaido 060-8636, Japan
| | - Yuka Okada
- Department of Ophthalmology, Wakayama Medical University School of Medicine, Wakayama 641-0012, Japan
| | - Saika Shizuya
- Department of Ophthalmology, Wakayama Medical University School of Medicine, Wakayama 641-0012, Japan
| | - Naoko Yamaguchi
- Department of Pharmacology, School of Medicine, Aichi Medical University, Aichi 480-1195, Japan
| | - Shigetsugu Hatakeyama
- Department of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Hokkaido 060-8636, Japan
| | - Kenta Maruyama
- Department of Pharmacology, School of Medicine, Aichi Medical University, Aichi 480-1195, Japan.
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Tsotsokou G, Trompoukis G, Papatheodoropoulos C. Muscarinic Modulation of Synaptic Transmission and Short-Term Plasticity in the Dorsal and Ventral Hippocampus. Mol Cell Neurosci 2024; 129:103935. [PMID: 38703973 DOI: 10.1016/j.mcn.2024.103935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 04/29/2024] [Accepted: 04/30/2024] [Indexed: 05/06/2024] Open
Abstract
Muscarinic neurotransmission is fundamentally involved in supporting several brain functions by modulating flow of information in brain neural circuits including the hippocampus which displays a remarkable functional segregation along its longitudinal axis. However, how muscarinic neuromodulation contributes to the functional segregation along the hippocampus remains unclear. In this study we show that the nonselective muscarinic receptor agonist carbachol similarly suppresses basal synaptic transmission in the dorsal and ventral CA1 hippocampal field, in a concentration-depended manner. Furthermore, using a ten-pulse stimulation train of varying frequency we found that carbachol changes the frequency filtering properties more in ventral than dorsal hippocampus by facilitating synaptic inputs at a wide range of input frequencies in the ventral compared with dorsal hippocampus. Using the M2 receptor antagonist gallamine and the M4 receptor antagonist tropicamide, we found that M2 receptors are involved in controlling basal synaptic transmission and short-term synaptic plasticity (STSP) in the ventral but not the dorsal hippocampus, while M4 receptors participate in modulating basal synaptic transmission and STSP in both segments of the hippocampus. These results were corroborated by the higher protein expression levels of M2 receptors in the ventral compared with dorsal hippocampus. We conclude that muscarinic transmission modulates excitatory synaptic transmission and short-term synaptic plasticity along the entire rat hippocampus by acting through M4 receptors and recruiting M2 receptors only in the ventral hippocampus. Furthermore, M4 receptors appear to exert a permissive role on the actions of M2 receptors on STSP in the ventral hippocampus. This dorsoventral differentiation of muscarinic modulation is expected to have important implications in information processing along the endogenous hippocampal circuitry.
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Affiliation(s)
- Giota Tsotsokou
- Laboratory of Physiology, University of Patras, Department of Medicine, Rion, Greece
| | - George Trompoukis
- Laboratory of Physiology, University of Patras, Department of Medicine, Rion, Greece
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Baginska U, Balagura G, Toonen RF, Verhage M. High-throughput assay for regulated secretion of neuropeptides in mouse and human neurons. J Biol Chem 2024; 300:107321. [PMID: 38677517 PMCID: PMC11170154 DOI: 10.1016/j.jbc.2024.107321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 04/17/2024] [Accepted: 04/20/2024] [Indexed: 04/29/2024] Open
Abstract
Neuropeptides are the largest group of chemical signals in the brain. More than 100 different neuropeptides modulate various brain functions and their dysregulation has been associated with neurological disorders. Neuropeptides are packed into dense core vesicles (DCVs), which fuse with the plasma membrane in a calcium-dependent manner. Here, we describe a novel high-throughput assay for DCV exocytosis using a chimera of Nanoluc luciferase and the DCV-cargo neuropeptide Y (NPY). The NPY-Nanoluc reporter colocalized with endogenous DCV markers in all neurons with little mislocalization to other cellular compartments. NPY-Nanoluc reported DCV exocytosis in both rodent and induced pluripotent stem cell-derived human neurons, with similar depolarization, Ca2+, RAB3, and STXBP1/MUNC18 dependence as low-throughput assays. Moreover, NPY-Nanoluc accurately reported modulation of DCV exocytosis by known modulators diacylglycerol analog and Ca2+ channel blocker and showed a higher assay sensitivity than a widely used single-cell low-throughput assay. Lastly, we showed that Nanoluc coupled to other secretory markers reports on constitutive secretion. In conclusion, the NPY-Nanoluc is a sensitive reporter of DCV exocytosis in mammalian neurons, suitable for pharmacological and genomic screening for DCV exocytosis genes and for mechanism-based treatments for central nervous system disorders.
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Affiliation(s)
- Urszula Baginska
- Department of Functional Genomics, Faculty of Exact Science, Center for Neurogenomics and Cognitive Research, VU University Amsterdam and VU Medical Center, Amsterdam, The Netherlands
| | - Ganna Balagura
- Department of Functional Genomics, Faculty of Exact Science, Center for Neurogenomics and Cognitive Research, VU University Amsterdam and VU Medical Center, Amsterdam, The Netherlands; Department of Neurosciences, Rehabilitation, Ophthalmology, Genetics, and Maternal and Child Health, University of Genoa, Genoa, Italy; Pediatric Neurology and Muscular Diseases Unit, IRCCS 'G. Gaslini' Institute, Genoa, Italy
| | - Ruud F Toonen
- Department of Functional Genomics, Faculty of Exact Science, Center for Neurogenomics and Cognitive Research, VU University Amsterdam and VU Medical Center, Amsterdam, The Netherlands
| | - Matthijs Verhage
- Department of Functional Genomics, Faculty of Exact Science, Center for Neurogenomics and Cognitive Research, VU University Amsterdam and VU Medical Center, Amsterdam, The Netherlands; Human Genetics, Amsterdam University Medical Center, Amsterdam, The Netherlands.
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36
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Nern A, Loesche F, Takemura SY, Burnett LE, Dreher M, Gruntman E, Hoeller J, Huang GB, Januszewski M, Klapoetke NC, Koskela S, Longden KD, Lu Z, Preibisch S, Qiu W, Rogers EM, Seenivasan P, Zhao A, Bogovic J, Canino BS, Clements J, Cook M, Finley-May S, Flynn MA, Hameed I, Fragniere AM, Hayworth KJ, Hopkins GP, Hubbard PM, Katz WT, Kovalyak J, Lauchie SA, Leonard M, Lohff A, Maldonado CA, Mooney C, Okeoma N, Olbris DJ, Ordish C, Paterson T, Phillips EM, Pietzsch T, Salinas JR, Rivlin PK, Schlegel P, Scott AL, Scuderi LA, Takemura S, Talebi I, Thomson A, Trautman ET, Umayam L, Walsh C, Walsh JJ, Xu CS, Yakal EA, Yang T, Zhao T, Funke J, George R, Hess HF, Jefferis GS, Knecht C, Korff W, Plaza SM, Romani S, Saalfeld S, Scheffer LK, Berg S, Rubin GM, Reiser MB. Connectome-driven neural inventory of a complete visual system. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.16.589741. [PMID: 38659887 PMCID: PMC11042306 DOI: 10.1101/2024.04.16.589741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Vision provides animals with detailed information about their surroundings, conveying diverse features such as color, form, and movement across the visual scene. Computing these parallel spatial features requires a large and diverse network of neurons, such that in animals as distant as flies and humans, visual regions comprise half the brain's volume. These visual brain regions often reveal remarkable structure-function relationships, with neurons organized along spatial maps with shapes that directly relate to their roles in visual processing. To unravel the stunning diversity of a complex visual system, a careful mapping of the neural architecture matched to tools for targeted exploration of that circuitry is essential. Here, we report a new connectome of the right optic lobe from a male Drosophila central nervous system FIB-SEM volume and a comprehensive inventory of the fly's visual neurons. We developed a computational framework to quantify the anatomy of visual neurons, establishing a basis for interpreting how their shapes relate to spatial vision. By integrating this analysis with connectivity information, neurotransmitter identity, and expert curation, we classified the ~53,000 neurons into 727 types, about half of which are systematically described and named for the first time. Finally, we share an extensive collection of split-GAL4 lines matched to our neuron type catalog. Together, this comprehensive set of tools and data unlock new possibilities for systematic investigations of vision in Drosophila, a foundation for a deeper understanding of sensory processing.
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Affiliation(s)
- Aljoscha Nern
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Frank Loesche
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Shin-Ya Takemura
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Laura E Burnett
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Marisa Dreher
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | | | - Judith Hoeller
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Gary B Huang
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | | | - Nathan C Klapoetke
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Sanna Koskela
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Kit D Longden
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Zhiyuan Lu
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Stephan Preibisch
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Wei Qiu
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Edward M Rogers
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Pavithraa Seenivasan
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Arthur Zhao
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - John Bogovic
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Brandon S Canino
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Jody Clements
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Michael Cook
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Samantha Finley-May
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Miriam A Flynn
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Imran Hameed
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Alexandra Mc Fragniere
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Kenneth J Hayworth
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Gary Patrick Hopkins
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Philip M Hubbard
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - William T Katz
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Julie Kovalyak
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Shirley A Lauchie
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Meghan Leonard
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Alanna Lohff
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Charli A Maldonado
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Caroline Mooney
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Nneoma Okeoma
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Donald J Olbris
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Christopher Ordish
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Tyler Paterson
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Emily M Phillips
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Tobias Pietzsch
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Jennifer Rivas Salinas
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Patricia K Rivlin
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Philipp Schlegel
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Ashley L Scott
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Louis A Scuderi
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Satoko Takemura
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Iris Talebi
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Alexander Thomson
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Eric T Trautman
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Lowell Umayam
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Claire Walsh
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - John J Walsh
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - C Shan Xu
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Emily A Yakal
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Tansy Yang
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Ting Zhao
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Jan Funke
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Reed George
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Harald F Hess
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Gregory Sxe Jefferis
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Christopher Knecht
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Wyatt Korff
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Stephen M Plaza
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Sandro Romani
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Stephan Saalfeld
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Louis K Scheffer
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Stuart Berg
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Gerald M Rubin
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
| | - Michael B Reiser
- University of Toronto Scarborough
- Google Research, Google LLC, Switzerland
- MRC Laboratory of Molecular Biology, Cambridge, UK and Department of Zoology, University of Cambridge, UK
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Beiran M, Litwin-Kumar A. Prediction of neural activity in connectome-constrained recurrent networks. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.22.581667. [PMID: 38854115 PMCID: PMC11160579 DOI: 10.1101/2024.02.22.581667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
We develop a theory of connectome-constrained neural networks in which a "student" network is trained to reproduce the activity of a ground-truth "teacher," representing a neural system for which a connectome is available. Unlike standard paradigms with unconstrained connectivity, here the two networks have the same connectivity but different biophysical parameters, reflecting uncertainty in neuronal and synaptic properties. We find that a connectome is often insufficient to constrain the dynamics of networks that perform a specific task, illustrating the difficulty of inferring function from connectivity alone. However, recordings from a small subset of neurons can remove this degeneracy, producing dynamics in the student that agree with the teacher. Our theory can also prioritize which neurons to record from to most efficiently predict unmeasured network activity. Our analysis shows that the solution spaces of connectome-constrained and unconstrained models are qualitatively different and provides a framework to determine when such models yield consistent dynamics.
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Affiliation(s)
- Manuel Beiran
- Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA
| | - Ashok Litwin-Kumar
- Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA
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38
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Sridhar G, Vergassola M, Marques JC, Orger MB, Costa AC, Wyart C. Uncovering multiscale structure in the variability of larval zebrafish navigation. ARXIV 2024:arXiv:2405.17143v1. [PMID: 38855549 PMCID: PMC11160889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Animals chain movements into long-lived motor strategies, exhibiting variability across scales that reflects the interplay between internal states and environmental cues. To reveal structure in such variability, we build Markov models of movement sequences that bridges across time scales and enables a quantitative comparison of behavioral phenotypes among individuals. Applied to larval zebrafish responding to diverse sensory cues, we uncover a hierarchy of long-lived motor strategies, dominated by changes in orientation distinguishing cruising versus wandering strategies. Environmental cues induce preferences along these modes at the population level: while fish cruise in the light, they wander in response to aversive stimuli, or in search for appetitive prey. As our method encodes the behavioral dynamics of each individual fish in the transitions among coarse-grained motor strategies, we use it to uncover a hierarchical structure in the phenotypic variability that reflects exploration-exploitation trade-offs. Across a wide range of sensory cues, a major source of variation among fish is driven by prior and/or immediate exposure to prey that induces exploitation phenotypes. A large degree of variability that is not explained by environmental cues unravels motivational states that override the sensory context to induce contrasting exploration-exploitation phenotypes. Altogether, by extracting the timescales of motor strategies deployed during navigation, our approach exposes structure among individuals and reveals internal states tuned by prior experience.
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Affiliation(s)
- Gautam Sridhar
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
| | - Massimo Vergassola
- Laboratoire de Physique de l’Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - João C. Marques
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa 1400-038, Portugal
| | - Michael B. Orger
- Champalimaud Research, Champalimaud Centre for the Unknown, Avenida Brasília, Doca de Pedrouços, Lisboa 1400-038, Portugal
| | - Antonio Carlos Costa
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
- Laboratoire de Physique de l’Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Claire Wyart
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
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39
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Sridhar G, Vergassola M, Marques JC, Orger MB, Costa AC, Wyart C. Uncovering multiscale structure in the variability of larval zebrafish navigation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.16.594521. [PMID: 38798455 PMCID: PMC11118365 DOI: 10.1101/2024.05.16.594521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Animals chain movements into long-lived motor strategies, resulting in variability that ultimately reflects the interplay between internal states and environmental cues. To reveal structure in such variability, we build models that bridges across time scales that enable a quantitative comparison of behavioral phenotypes among individuals. Applied to larval zebrafish exposed to diverse sensory cues, we uncover a hierarchy of long-lived motor strategies, dominated by changes in orientation distinguishing cruising and wandering strategies. Environmental cues induce preferences along these modes at the population level: while fish cruise in the light, they wander in response to aversive (dark) stimuli or in search for prey. Our method enables us to encode the behavioral dynamics of each individual fish in the transitions among coarse-grained motor strategies. By doing so, we uncover a hierarchical structure to the phenotypic variability that corresponds to exploration-exploitation trade-offs. Within a wide range of sensory cues, a major source of variation among fish is driven by prior and immediate exposure to prey that induces exploitation phenotypes. However, a large degree of variability is unexplained by environmental cues, pointing to hidden states that override the sensory context to induce contrasting exploration-exploitation phenotypes. Altogether, our approach extracts the timescales of motor strategies deployed during navigation, exposing undiscovered structure among individuals and pointing to internal states tuned by prior experience.
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40
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MacDonald A, Hebling A, Wei XP, Yackle K. The breath shape controls intonation of mouse vocalizations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.16.562597. [PMID: 37904912 PMCID: PMC10614923 DOI: 10.1101/2023.10.16.562597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2023]
Abstract
Intonation in speech is the control of vocal pitch to layer expressive meaning to communication, like increasing pitch to indicate a question. Also, stereotyped patterns of pitch are used to create distinct sounds with different denotations, like in tonal languages and, perhaps, the ten sounds in the murine lexicon. A basic tone is created by exhalation through a constricted laryngeal voice box, and it is thought that more complex utterances are produced solely by dynamic changes in laryngeal tension. But perhaps, the shifting pitch also results from altering the swiftness of exhalation. Consistent with the latter model, we describe that intonation in most vocalization types follows deviations in exhalation that appear to be generated by the re-activation of the cardinal breathing muscle for inspiration. We also show that the brainstem vocalization central pattern generator, the iRO, can create this breath pattern. Consequently, ectopic activation of the iRO not only induces phonation, but also the pitch patterns that compose most of the vocalizations in the murine lexicon. These results reveal a novel brainstem mechanism for intonation.
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Affiliation(s)
- Alastair MacDonald
- Department of Physiology, University of California-San Francisco, San Francisco, CA 94143
| | - Alina Hebling
- Neuroscience Graduate Program, University of California-San Francisco, San Francisco, CA 94143, USA
| | - Xin Paul Wei
- Department of Physiology, University of California-San Francisco, San Francisco, CA 94143
- Biomedical Sciences Graduate Program, University of California-San Francisco, San Francisco, CA 94143, USA
| | - Kevin Yackle
- Department of Physiology, University of California-San Francisco, San Francisco, CA 94143
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41
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Tamboli S, Singh S, Topolnik D, El Amine Barkat M, Radhakrishnan R, Guet-McCreight A, Topolnik L. Mouse hippocampal CA1 VIP interneurons detect novelty in the environment and support recognition memory. Cell Rep 2024; 43:114115. [PMID: 38607918 DOI: 10.1016/j.celrep.2024.114115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 02/17/2024] [Accepted: 03/29/2024] [Indexed: 04/14/2024] Open
Abstract
In the CA1 hippocampus, vasoactive intestinal polypeptide-expressing interneurons (VIP-INs) play a prominent role in disinhibitory circuit motifs. However, the specific behavioral conditions that lead to circuit disinhibition remain uncertain. To investigate the behavioral relevance of VIP-IN activity, we employed wireless technologies allowing us to monitor and manipulate their function in freely behaving mice. Our findings reveal that, during spatial exploration in new environments, VIP-INs in the CA1 hippocampal region become highly active, facilitating the rapid encoding of novel spatial information. Remarkably, both VIP-INs and pyramidal neurons (PNs) exhibit increased activity when encountering novel changes in the environment, including context- and object-related alterations. Concurrently, somatostatin- and parvalbumin-expressing inhibitory populations show an inverse relationship with VIP-IN and PN activity, revealing circuit disinhibition that occurs on a timescale of seconds. Thus, VIP-IN-mediated disinhibition may constitute a crucial element in the rapid encoding of novelty and the acquisition of recognition memory.
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Affiliation(s)
- Suhel Tamboli
- Neuroscience Axis, CRCHUQ-CHUL, Quebec City, PQ, Canada; Department of Biochemistry, Microbiology, and Bioinformatics, Université Laval, Quebec City, PQ, Canada
| | - Sanjay Singh
- Neuroscience Axis, CRCHUQ-CHUL, Quebec City, PQ, Canada; Department of Biochemistry, Microbiology, and Bioinformatics, Université Laval, Quebec City, PQ, Canada
| | - Dimitry Topolnik
- Neuroscience Axis, CRCHUQ-CHUL, Quebec City, PQ, Canada; Department of Biochemistry, Microbiology, and Bioinformatics, Université Laval, Quebec City, PQ, Canada
| | - Mohamed El Amine Barkat
- Neuroscience Axis, CRCHUQ-CHUL, Quebec City, PQ, Canada; Department of Biochemistry, Microbiology, and Bioinformatics, Université Laval, Quebec City, PQ, Canada
| | - Risna Radhakrishnan
- Neuroscience Axis, CRCHUQ-CHUL, Quebec City, PQ, Canada; Department of Biochemistry, Microbiology, and Bioinformatics, Université Laval, Quebec City, PQ, Canada
| | | | - Lisa Topolnik
- Neuroscience Axis, CRCHUQ-CHUL, Quebec City, PQ, Canada; Department of Biochemistry, Microbiology, and Bioinformatics, Université Laval, Quebec City, PQ, Canada.
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42
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Costa AC, Sridhar G, Wyart C, Vergassola M. Fluctuating landscapes and heavy tails in animal behavior. ARXIV 2024:arXiv:2301.01111v4. [PMID: 36748006 PMCID: PMC9900967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Animal behavior is shaped by a myriad of mechanisms acting on a wide range of scales, which hampers quantitative reasoning and the identification of general principles. Here, we combine data analysis and theory to investigate the relationship between behavioral plasticity and heavy-tailed statistics often observed in animal behavior. Specifically, we first leverage high-resolution recordings of C. elegans locomotion to show that stochastic transitions among long-lived behaviors exhibit heavy-tailed first passage time distributions and correlation functions. Such heavy tails can be explained by slow adaptation of behavior over time. This particular result motivates our second step of introducing a general model where we separate fast dynamics on a quasi-stationary multi-well potential, from non-ergodic, slowly varying modes. We then show that heavy tails generically emerge in such a model, and we provide a theoretical derivation of the resulting functional form, which can become a power law with exponents that depend on the strength of the fluctuations. Finally, we provide direct support for the generality of our findings by testing them in a C. elegans mutant where adaptation is suppressed and heavy tails thus disappear, and recordings of larval zebrafish swimming behavior where heavy tails are again prevalent.
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Affiliation(s)
- Antonio Carlos Costa
- Laboratoire de Physique de l'Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Gautam Sridhar
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
| | - Claire Wyart
- Sorbonne University, Paris Brain Institute (ICM), Inserm U1127, CNRS UMR 7225, Paris, France
| | - Massimo Vergassola
- Laboratoire de Physique de l'Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
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43
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Meng J, Ahamed T, Yu B, Hung W, EI Mouridi S, Wang Z, Zhang Y, Wen Q, Boulin T, Gao S, Zhen M. A tonically active master neuron modulates mutually exclusive motor states at two timescales. SCIENCE ADVANCES 2024; 10:eadk0002. [PMID: 38598630 PMCID: PMC11006214 DOI: 10.1126/sciadv.adk0002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 03/07/2024] [Indexed: 04/12/2024]
Abstract
Continuity of behaviors requires animals to make smooth transitions between mutually exclusive behavioral states. Neural principles that govern these transitions are not well understood. Caenorhabditis elegans spontaneously switch between two opposite motor states, forward and backward movement, a phenomenon thought to reflect the reciprocal inhibition between interneurons AVB and AVA. Here, we report that spontaneous locomotion and their corresponding motor circuits are not separately controlled. AVA and AVB are neither functionally equivalent nor strictly reciprocally inhibitory. AVA, but not AVB, maintains a depolarized membrane potential. While AVA phasically inhibits the forward promoting interneuron AVB at a fast timescale, it maintains a tonic, extrasynaptic excitation on AVB over the longer timescale. We propose that AVA, with tonic and phasic activity of opposite polarities on different timescales, acts as a master neuron to break the symmetry between the underlying forward and backward motor circuits. This master neuron model offers a parsimonious solution for sustained locomotion consisted of mutually exclusive motor states.
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Affiliation(s)
- Jun Meng
- Department of Physiology, University of Toronto, Toronto, ON, Canada
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
| | - Tosif Ahamed
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
| | - Bin Yu
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Wesley Hung
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
| | - Sonia EI Mouridi
- University Claude Bernard Lyon 1, MeLiS, CNRS UMR 5284, INSERM U1314, 69008 Lyon, France
| | - Zezhen Wang
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, China
| | - Yongning Zhang
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Quan Wen
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, China
| | - Thomas Boulin
- University Claude Bernard Lyon 1, MeLiS, CNRS UMR 5284, INSERM U1314, 69008 Lyon, France
| | - Shangbang Gao
- College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Mei Zhen
- Department of Physiology, University of Toronto, Toronto, ON, Canada
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada
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44
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Zhao Y, Huang CX, Gu Y, Zhao Y, Ren W, Wang Y, Chen J, Guan NN, Song J. Serotonergic modulation of vigilance states in zebrafish and mice. Nat Commun 2024; 15:2596. [PMID: 38519480 PMCID: PMC10959952 DOI: 10.1038/s41467-024-47021-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Accepted: 03/12/2024] [Indexed: 03/25/2024] Open
Abstract
Vigilance refers to being alertly watchful or paying sustained attention to avoid potential threats. Animals in vigilance states reduce locomotion and have an enhanced sensitivity to aversive stimuli so as to react quickly to dangers. Here we report that an unconventional 5-HT driven mechanism operating at neural circuit level which shapes the internal state underlying vigilance behavior in zebrafish and male mice. The neural signature of internal vigilance state was characterized by persistent low-frequency high-amplitude neuronal synchrony in zebrafish dorsal pallium and mice prefrontal cortex. The neuronal synchronization underlying vigilance was dependent on intense release of 5-HT induced by persistent activation of either DRN 5-HT neuron or local 5-HT axon terminals in related brain regions via activation of 5-HTR7. Thus, we identify a mechanism of vigilance behavior across species that illustrates the interplay between neuromodulators and neural circuits necessary to shape behavior states.
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Affiliation(s)
- Yang Zhao
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Chun-Xiao Huang
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Yiming Gu
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Yacong Zhao
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Wenjie Ren
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Yutong Wang
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Jinjin Chen
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China
| | - Na N Guan
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China.
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China.
- Frontiers Science Center for Intelligent Autonomous Systems, Tongji University, Shanghai, China.
- Department of Neuroscience, Karolinska Institutet, 171 77, Stockholm, Sweden.
| | - Jianren Song
- Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, 200434, China.
- Clinical Center for Brain and Spinal Cord Research, Tongji University, 200092, Shanghai, China.
- Frontiers Science Center for Intelligent Autonomous Systems, Tongji University, Shanghai, China.
- Department of Neuroscience, Karolinska Institutet, 171 77, Stockholm, Sweden.
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Haas A, Chung J, Kent C, Mills B, McCoy M. Vertebral Subluxation and Systems Biology: An Integrative Review Exploring the Salutogenic Influence of Chiropractic Care on the Neuroendocrine-Immune System. Cureus 2024; 16:e56223. [PMID: 38618450 PMCID: PMC11016242 DOI: 10.7759/cureus.56223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/15/2024] [Indexed: 04/16/2024] Open
Abstract
In this paper we synthesize an expansive body of literature examining the multifaceted influence of chiropractic care on processes within and modulators of the neuroendocrine-immune (NEI) system, for the purpose of generating an inductive hypothesis regarding the potential impacts of chiropractic care on integrated physiology. Taking a broad, interdisciplinary, and integrative view of two decades of research-documented outcomes of chiropractic care, inclusive of reports ranging from systematic and meta-analysis and randomized and observational trials to case and cohort studies, this review encapsulates a rigorous analysis of research and suggests the appropriateness of a more integrative perspective on the impact of chiropractic care on systemic physiology. A novel perspective on the salutogenic, health-promoting effects of chiropractic adjustment is presented, focused on the improvement of physical indicators of well-being and adaptability such as blood pressure, heart rate variability, and sleep, potential benefits that may be facilitated through multiple neurologically mediated pathways. Our findings support the biological plausibility of complex benefits from chiropractic intervention that is not limited to simple neuromusculoskeletal outcomes and open new avenues for future research, specifically the exploration and mapping of the precise neural pathways and networks influenced by chiropractic adjustment.
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Affiliation(s)
- Amy Haas
- Research, Foundation for Vertebral Subluxation, Kennesaw, USA
| | - Jonathan Chung
- Research, Foundation for Vertebral Subluxation, Kennesaw, USA
| | - Christopher Kent
- Research, Sherman College, Spartanburg, USA
- Research, Foundation for Vertebral Subluxation, Kennesaw, USA
| | - Brooke Mills
- Research, Foundation for Vertebral Subluxation, Kennesaw, USA
| | - Matthew McCoy
- Research, Foundation for Vertebral Subluxation, Kennesaw, USA
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46
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Sullivan LF, Barker MS, Felix PC, Vuong RQ, White BH. Neuromodulation and the toolkit for behavioural evolution: can ecdysis shed light on an old problem? FEBS J 2024; 291:1049-1079. [PMID: 36223183 PMCID: PMC10166064 DOI: 10.1111/febs.16650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 09/06/2022] [Accepted: 10/12/2022] [Indexed: 05/10/2023]
Abstract
The geneticist Thomas Dobzhansky famously declared: 'Nothing in biology makes sense except in the light of evolution'. A key evolutionary adaptation of Metazoa is directed movement, which has been elaborated into a spectacularly varied number of behaviours in animal clades. The mechanisms by which animal behaviours have evolved, however, remain unresolved. This is due, in part, to the indirect control of behaviour by the genome, which provides the components for both building and operating the brain circuits that generate behaviour. These brain circuits are adapted to respond flexibly to environmental contingencies and physiological needs and can change as a function of experience. The resulting plasticity of behavioural expression makes it difficult to characterize homologous elements of behaviour and to track their evolution. Here, we evaluate progress in identifying the genetic substrates of behavioural evolution and suggest that examining adaptive changes in neuromodulatory signalling may be a particularly productive focus for future studies. We propose that the behavioural sequences used by ecdysozoans to moult are an attractive model for studying the role of neuromodulation in behavioural evolution.
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Affiliation(s)
- Luis F Sullivan
- Section on Neural Function, Laboratory of Molecular Biology, National Institute of Mental Health, Bethesda, MD, USA
| | - Matthew S Barker
- Section on Neural Function, Laboratory of Molecular Biology, National Institute of Mental Health, Bethesda, MD, USA
| | - Princess C Felix
- Section on Neural Function, Laboratory of Molecular Biology, National Institute of Mental Health, Bethesda, MD, USA
| | - Richard Q Vuong
- Section on Neural Function, Laboratory of Molecular Biology, National Institute of Mental Health, Bethesda, MD, USA
| | - Benjamin H White
- Section on Neural Function, Laboratory of Molecular Biology, National Institute of Mental Health, Bethesda, MD, USA
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47
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Ma P, Chen P, Tilden EI, Aggarwal S, Oldenborg A, Chen Y. Fast and slow: Recording neuromodulator dynamics across both transient and chronic time scales. SCIENCE ADVANCES 2024; 10:eadi0643. [PMID: 38381826 PMCID: PMC10881037 DOI: 10.1126/sciadv.adi0643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 01/17/2024] [Indexed: 02/23/2024]
Abstract
Neuromodulators transform animal behaviors. Recent research has demonstrated the importance of both sustained and transient change in neuromodulators, likely due to tonic and phasic neuromodulator release. However, no method could simultaneously record both types of dynamics. Fluorescence lifetime of optical reporters could offer a solution because it allows high temporal resolution and is impervious to sensor expression differences across chronic periods. Nevertheless, no fluorescence lifetime change across the entire classes of neuromodulator sensors was previously known. Unexpectedly, we find that several intensity-based neuromodulator sensors also exhibit fluorescence lifetime responses. Furthermore, we show that lifetime measures in vivo neuromodulator dynamics both with high temporal resolution and with consistency across animals and time. Thus, we report a method that can simultaneously measure neuromodulator change over transient and chronic time scales, promising to reveal the roles of multi-time scale neuromodulator dynamics in diseases, in response to therapies, and across development and aging.
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Affiliation(s)
- Pingchuan Ma
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
- Ph.D. Program in Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - Peter Chen
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
- Master’s Program in Biomedical Engineering, Washington University, St. Louis, MO 63110, USA
| | - Elizabeth I. Tilden
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
- Ph.D. Program in Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - Samarth Aggarwal
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - Anna Oldenborg
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - Yao Chen
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
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Thirtamara Rajamani K, Barbier M, Lefevre A, Niblo K, Cordero N, Netser S, Grinevich V, Wagner S, Harony-Nicolas H. Oxytocin activity in the paraventricular and supramammillary nuclei of the hypothalamus is essential for social recognition memory in rats. Mol Psychiatry 2024; 29:412-424. [PMID: 38052983 PMCID: PMC11116117 DOI: 10.1038/s41380-023-02336-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 11/09/2023] [Accepted: 11/17/2023] [Indexed: 12/07/2023]
Abstract
Oxytocin plays an important role in modulating social recognition memory. However, the direct implication of oxytocin neurons of the paraventricular nucleus of the hypothalamus (PVH) and their downstream hypothalamic targets in regulating short- and long-term forms of social recognition memory has not been fully investigated. In this study, we employed a chemogenetic approach to target the activity of PVH oxytocin neurons in male rats and found that specific silencing of this neuronal population led to an impairment in short- and long-term social recognition memory. We combined viral-mediated fluorescent labeling of oxytocin neurons with immunohistochemical techniques and identified the supramammillary nucleus (SuM) of the hypothalamus as a target of PVH oxytocinergic axonal projections in rats. We used multiplex fluorescence in situ hybridization to label oxytocin receptors in the SuM and determined that they are predominantly expressed in glutamatergic neurons, including those that project to the CA2 region of the hippocampus. Finally, we used a highly selective oxytocin receptor antagonist in the SuM to examine the involvement of oxytocin signaling in modulating short- and long-term social recognition memory and found that it is necessary for the formation of both. This study discovered a previously undescribed role for the SuM in regulating social recognition memory via oxytocin signaling and reinforced the specific role of PVH oxytocin neurons in regulating this form of memory.
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Affiliation(s)
- Keerthi Thirtamara Rajamani
- Department of Psychiatry and Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Robert Appel Alzheimer's Disease Research Institute, Weill Cornell Medicine, New York, NY, USA
| | - Marie Barbier
- Department of Psychiatry and Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Arthur Lefevre
- Department of Neuropeptide Research in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, University of Heidelberg, Mannheim, Germany
- Cortical Systems and Behavior Laboratory, University of California San Diego, San Diego, CA, USA
| | - Kristi Niblo
- Department of Psychiatry and Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Nicholas Cordero
- CUNY School of Medicine, The City College of New York, 160 Convent Avenue, New York, NY, USA
| | - Shai Netser
- Sagol Department of Neurobiology, University of Haifa, Haifa, Israel
| | - Valery Grinevich
- Department of Neuropeptide Research in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, University of Heidelberg, Mannheim, Germany
| | - Shlomo Wagner
- Sagol Department of Neurobiology, University of Haifa, Haifa, Israel
| | - Hala Harony-Nicolas
- Department of Psychiatry and Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Seaver Autism Center for Research and Treatment at the Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
- Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
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Fahoum SRH, Blitz DM. Switching neuron contributions to second network activity. J Neurophysiol 2024; 131:417-434. [PMID: 38197163 PMCID: PMC11305648 DOI: 10.1152/jn.00373.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 12/21/2023] [Accepted: 01/04/2024] [Indexed: 01/11/2024] Open
Abstract
Network flexibility is important for adaptable behaviors. This includes neuronal switching, where neurons alter their network participation, including changing from single- to dual-network activity. Understanding the implications of neuronal switching requires determining how a switching neuron interacts with each of its networks. Here, we tested 1) whether "home" and second networks, operating via divergent rhythm generation mechanisms, regulate a switching neuron and 2) if a switching neuron, recruited via modulation of intrinsic properties, contributes to rhythm or pattern generation in a new network. Small, well-characterized feeding-related networks (pyloric, ∼1 Hz; gastric mill, ∼0.1 Hz) and identified modulatory inputs make the isolated crab (Cancer borealis) stomatogastric nervous system (STNS) a useful model to study neuronal switching. In particular, the neuropeptide Gly1-SIFamide switches the lateral posterior gastric (LPG) neuron (2 copies) from pyloric-only to dual-frequency pyloric/gastric mill (fast/slow) activity via modulation of LPG-intrinsic properties. Using current injections to manipulate neuronal activity, we found that gastric mill, but not pyloric, network neurons regulated the intrinsically generated LPG slow bursting. Conversely, selective elimination of LPG from both networks using photoinactivation revealed that LPG regulated gastric mill neuron-firing frequencies but was not necessary for gastric mill rhythm generation or coordination. However, LPG alone was sufficient to produce a distinct pattern of network coordination. Thus, modulated intrinsic properties underlying dual-network participation may constrain which networks can regulate switching neuron activity. Furthermore, recruitment via intrinsic properties may occur in modulatory states where it is important for the switching neuron to actively contribute to network output.NEW & NOTEWORTHY We used small, well-characterized networks to investigate interactions between rhythmic networks and neurons that switch their network participation. For a neuron switching into dual-network activity, only the second network regulated its activity in that network. In addition, the switching neuron was sufficient but not necessary to coordinate second network neurons and regulated their activity levels. Thus, regulation of switching neurons may be selective, and a switching neuron is not necessarily simply a follower in additional networks.
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Affiliation(s)
- Savanna-Rae H Fahoum
- Department of Biology and Center for Neuroscience, Miami University, Oxford, Ohio, United States
| | - Dawn M Blitz
- Department of Biology and Center for Neuroscience, Miami University, Oxford, Ohio, United States
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Al-dardery NM, Khaity AM, Albakri KA, Abdelsattar AT, Benmelouka AY, Lee T, Foppiani JA, Lin SJ. Preservation versus dissection of the intercostobrachial nerve for breast cancer surgeries: a systematic review and meta-analysis. Ann Med Surg (Lond) 2024; 86:1003-1011. [PMID: 38333310 PMCID: PMC10849353 DOI: 10.1097/ms9.0000000000001622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 12/04/2023] [Indexed: 02/10/2024] Open
Abstract
Introduction This meta-analysis aimed to compare the efficacy of preservation of the intercostobrachial nerve (ICBN) versus its dissection for patients who underwent breast surgery. Methods The authors searched Web of Science, PubMed, Cochrane CENTRAL, and Scopus from inception until March 2023. Records were screened for eligible studies, and all relevant outcomes were pooled as an odds ratio (OR) with the corresponding 95% CI in the meta-analysis models using RevMan version 5.4. Results These results from 11 studies (1021 patients) favored preservation of the ICBN over its dissection in terms of anaesthesia and hypaesthesia [OR 0.50, (95% CI, 0.31-0.82); P = 0.006] and [OR 0.33, (95% CI, 0.16-0.68); P = 0.003], respectively. Whereas the overall effect favored ICBN dissection over preservation in the case of hyperaesthesia [OR 4.34, (95% CI, 1.43-13.15); P = 0.01]. Conversely, no significant variance was detected between the two groups in terms of pain [OR 0.68, (95% CI, 0.28-1.61) P = 0.38], paraesthesia [OR 0.88, (95% CI, 0.49-1.60); P = 0.68], and analgesia [OR 1.46, (95% CI, 0.05-45.69); P = 0.83]. Conclusion This meta-analysis revealed that the preservation of the ICBN has a significant effect on the disturbance of sensory parameters of hypaesthesia and anaesthesia when compared to its dissection. Further studies with larger sample sizes are recommended to precisely compare both techniques on a wider range of parameters.
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Affiliation(s)
| | | | | | | | | | | | - Jose A. Foppiani
- 1st Faculty of Medicine, Charles University, Prague, Czech Republic
- Division of Plastic and Reconstructive Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA
| | - Samuel J. Lin
- Division of Plastic and Reconstructive Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA
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