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Bergman ME, Kortbeek RWJ, Gutensohn M, Dudareva N. Plant terpenoid biosynthetic network and its multiple layers of regulation. Prog Lipid Res 2024; 95:101287. [PMID: 38906423 DOI: 10.1016/j.plipres.2024.101287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 06/13/2024] [Accepted: 06/17/2024] [Indexed: 06/23/2024]
Abstract
Terpenoids constitute one of the largest and most chemically diverse classes of primary and secondary metabolites in nature with an exceptional breadth of functional roles in plants. Biosynthesis of all terpenoids begins with the universal five‑carbon building blocks, isopentenyl diphosphate (IPP) and its allylic isomer dimethylallyl diphosphate (DMAPP), which in plants are derived from two compartmentally separated but metabolically crosstalking routes, the mevalonic acid (MVA) and methylerythritol phosphate (MEP) pathways. Here, we review the current knowledge on the terpenoid precursor pathways and highlight the critical hidden constraints as well as multiple regulatory mechanisms that coordinate and homeostatically govern carbon flux through the terpenoid biosynthetic network in plants.
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Affiliation(s)
- Matthew E Bergman
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Ruy W J Kortbeek
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Michael Gutensohn
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV, United States
| | - Natalia Dudareva
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States.
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2
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Karolkowski A, Meudec E, Bruguière A, Mitaine-Offer AC, Bouzidi E, Levavasseur L, Sommerer N, Briand L, Salles C. Faba Bean ( Vicia faba L. minor) Bitterness: An Untargeted Metabolomic Approach to Highlight the Impact of the Non-Volatile Fraction. Metabolites 2023; 13:964. [PMID: 37623907 PMCID: PMC10456379 DOI: 10.3390/metabo13080964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 08/17/2023] [Accepted: 08/18/2023] [Indexed: 08/26/2023] Open
Abstract
In the context of climate change, faba beans are an interesting alternative to animal proteins but are characterised by off-notes and bitterness that decrease consumer acceptability. However, research on pulse bitterness is often limited to soybeans and peas. This study aimed to highlight potential bitter non-volatile compounds in faba beans. First, the bitterness of flours and air-classified fractions (starch and protein) of three faba bean cultivars was evaluated by a trained panel. The fractions from the high-alkaloid cultivars and the protein fractions exhibited higher bitter intensity. Second, an untargeted metabolomic approach using ultra-high-performance liquid chromatography-diode array detector-tandem-high resolution mass spectrometry (UHPLC-DAD-HRMS) was correlated with the bitter perception of the fractions. Third, 42 tentatively identified non-volatile compounds were associated with faba bean bitterness by correlated sensory and metabolomic data. These compounds mainly belonged to different chemical classes such as alkaloids, amino acids, phenolic compounds, organic acids, and terpenoids. This research provided a better understanding of the molecules responsible for bitterness in faba beans and the impact of cultivar and air-classification on the bitter content. The bitter character of these highlighted compounds needs to be confirmed by sensory and/or cellular analyses to identify removal or masking strategies.
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Affiliation(s)
- Adeline Karolkowski
- Centre des Sciences du Goût et de L’Alimentation, CNRS, INRAE, Institut Agro, Université de Bourgogne, F-21000 Dijon, France; (A.K.); (A.B.); (A.-C.M.-O.)
- Groupe Soufflet-Invivo, F-10400 Nogent-sur-Seine, France;
| | - Emmanuelle Meudec
- SPO, Université de Montpellier, INRAE, Institut Agro, F-34000 Montpellier, France; (E.M.); (N.S.)
- INRAE, PROBE Research Infrastructure, PFP Polyphenol Analysis Facility, F-34060 Montpellier, France
| | - Antoine Bruguière
- Centre des Sciences du Goût et de L’Alimentation, CNRS, INRAE, Institut Agro, Université de Bourgogne, F-21000 Dijon, France; (A.K.); (A.B.); (A.-C.M.-O.)
| | - Anne-Claire Mitaine-Offer
- Centre des Sciences du Goût et de L’Alimentation, CNRS, INRAE, Institut Agro, Université de Bourgogne, F-21000 Dijon, France; (A.K.); (A.B.); (A.-C.M.-O.)
| | - Emilie Bouzidi
- Vivien Paille (Groupe Avril), F-59300 Valenciennes, France;
| | | | - Nicolas Sommerer
- SPO, Université de Montpellier, INRAE, Institut Agro, F-34000 Montpellier, France; (E.M.); (N.S.)
- INRAE, PROBE Research Infrastructure, PFP Polyphenol Analysis Facility, F-34060 Montpellier, France
| | - Loïc Briand
- Centre des Sciences du Goût et de L’Alimentation, CNRS, INRAE, Institut Agro, Université de Bourgogne, F-21000 Dijon, France; (A.K.); (A.B.); (A.-C.M.-O.)
| | - Christian Salles
- Centre des Sciences du Goût et de L’Alimentation, CNRS, INRAE, Institut Agro, Université de Bourgogne, F-21000 Dijon, France; (A.K.); (A.B.); (A.-C.M.-O.)
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3
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Conart C, Bomzan DP, Huang XQ, Bassard JE, Paramita SN, Saint-Marcoux D, Rius-Bony A, Hivert G, Anchisi A, Schaller H, Hamama L, Magnard JL, Lipko A, Swiezewska E, Jame P, Riveill G, Hibrand-Saint Oyant L, Rohmer M, Lewinsohn E, Dudareva N, Baudino S, Caissard JC, Boachon B. A cytosolic bifunctional geranyl/farnesyl diphosphate synthase provides MVA-derived GPP for geraniol biosynthesis in rose flowers. Proc Natl Acad Sci U S A 2023; 120:e2221440120. [PMID: 37126706 PMCID: PMC10175749 DOI: 10.1073/pnas.2221440120] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 03/30/2023] [Indexed: 05/03/2023] Open
Abstract
Geraniol derived from essential oils of various plant species is widely used in the cosmetic and perfume industries. It is also an essential trait of the pleasant smell of rose flowers. In contrast to other monoterpenes which are produced in plastids via the methyl erythritol phosphate pathway, geraniol biosynthesis in roses relies on cytosolic NUDX1 hydrolase which dephosphorylates geranyl diphosphate (GPP). However, the metabolic origin of cytosolic GPP remains unknown. By feeding Rosa chinensis "Old Blush" flowers with pathway-specific precursors and inhibitors, combined with metabolic profiling and functional characterization of enzymes in vitro and in planta, we show that geraniol is synthesized through the cytosolic mevalonate (MVA) pathway by a bifunctional geranyl/farnesyl diphosphate synthase, RcG/FPPS1, producing both GPP and farnesyl diphosphate (FPP). The downregulation and overexpression of RcG/FPPS1 in rose petals affected not only geraniol and germacrene D emissions but also dihydro-β-ionol, the latter due to metabolic cross talk of RcG/FPPS1-dependent isoprenoid intermediates trafficking from the cytosol to plastids. Phylogenetic analysis together with functional characterization of G/FPPS orthologs revealed that the G/FPPS activity is conserved among Rosaceae species. Site-directed mutagenesis and molecular dynamic simulations enabled to identify two conserved amino acids that evolved from ancestral FPPSs and contribute to GPP/FPP product specificity. Overall, this study elucidates the origin of the cytosolic GPP for NUDX1-dependent geraniol production, provides insights into the emergence of the RcG/FPPS1 GPPS activity from the ancestral FPPSs, and shows that RcG/FPPS1 plays a key role in the biosynthesis of volatile terpenoid compounds in rose flowers.
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Affiliation(s)
- Corentin Conart
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Dikki Pedenla Bomzan
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Xing-Qi Huang
- Department of Biochemistry, Purdue University, West Lafayette, IN47907-2063
| | - Jean-Etienne Bassard
- Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Unité Propre de Recherche 2357, Université de Strasbourg, Strasbourg67084, France
| | - Saretta N. Paramita
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Denis Saint-Marcoux
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Aurélie Rius-Bony
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Gal Hivert
- Department of Vegetable Crops, Newe Ya’ar Research Center, Agricultural Research organization, The Volcani Center, Ramat Yishay30095, Israel
- Department of Vegetable Crops, The Robert Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot76100001, Israel
| | - Anthony Anchisi
- Université de Lyon, Centre National de la Recherche Scientifique, Université Claude Bernard Lyon 1, Institut des Sciences Analytiques, UMR 5280, VilleurbanneF-69100, France
| | - Hubert Schaller
- Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, Unité Propre de Recherche 2357, Université de Strasbourg, Strasbourg67084, France
| | - Latifa Hamama
- Université d'Angers, Institut Agro, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Institut de Recherche en Horticulture et Semences, Structure Fédérative de Recherche Qualité et Santé du Végétal, Angers49000, France
| | - Jean-Louis Magnard
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Agata Lipko
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Warsaw02-109Poland
| | - Ewa Swiezewska
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw02-106Poland
| | - Patrick Jame
- Université de Lyon, Centre National de la Recherche Scientifique, Université Claude Bernard Lyon 1, Institut des Sciences Analytiques, UMR 5280, VilleurbanneF-69100, France
| | - Geneviève Riveill
- Université de Strasbourg, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Unité Mixte de Recherche 1131 Santé de la Vigne et Qualité du Vin,F-68000Colmar, France
| | - Laurence Hibrand-Saint Oyant
- Université d'Angers, Institut Agro, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Institut de Recherche en Horticulture et Semences, Structure Fédérative de Recherche Qualité et Santé du Végétal, Angers49000, France
| | - Michel Rohmer
- Institut de Chimie de Strasbourg, Université de Strasbourg/Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7177, Institut Le Bel, Strasbourg67081, France
| | - Efraim Lewinsohn
- Department of Vegetable Crops, Newe Ya’ar Research Center, Agricultural Research organization, The Volcani Center, Ramat Yishay30095, Israel
- Department of Vegetable Crops, The Robert Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot76100001, Israel
| | - Natalia Dudareva
- Department of Biochemistry, Purdue University, West Lafayette, IN47907-2063
- Purdue Center for Plant Biology, Purdue University, West Lafayette, IN47907
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN47907-2010
| | - Sylvie Baudino
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Jean-Claude Caissard
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
| | - Benoît Boachon
- Université Jean Monnet Saint-Etienne, Centre National de la Recherche Scientifique, Laboratoire de Biotechnologies Végétales appliquées aux Plantes Aromatiques et Médicinales, Unité Mixte de Recherche 5079, Saint-EtienneF-42023, France
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4
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Saldivar EV, Ding Y, Poretsky E, Bird S, Block AK, Huffaker A, Schmelz EA. Maize Terpene Synthase 8 (ZmTPS8) Contributes to a Complex Blend of Fungal-Elicited Antibiotics. PLANTS (BASEL, SWITZERLAND) 2023; 12:1111. [PMID: 36903970 PMCID: PMC10005556 DOI: 10.3390/plants12051111] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 02/23/2023] [Accepted: 02/23/2023] [Indexed: 06/18/2023]
Abstract
In maize (Zea mays), fungal-elicited immune responses include the accumulation of terpene synthase (TPS) and cytochrome P450 monooxygenases (CYP) enzymes resulting in complex antibiotic arrays of sesquiterpenoids and diterpenoids, including α/β-selinene derivatives, zealexins, kauralexins and dolabralexins. To uncover additional antibiotic families, we conducted metabolic profiling of elicited stem tissues in mapping populations, which included B73 × M162W recombinant inbred lines and the Goodman diversity panel. Five candidate sesquiterpenoids associated with a chromosome 1 locus spanning the location of ZmTPS27 and ZmTPS8. Heterologous enzyme co-expression studies of ZmTPS27 in Nicotiana benthamiana resulted in geraniol production while ZmTPS8 yielded α-copaene, δ-cadinene and sesquiterpene alcohols consistent with epi-cubebol, cubebol, copan-3-ol and copaborneol matching the association mapping efforts. ZmTPS8 is an established multiproduct α-copaene synthase; however, ZmTPS8-derived sesquiterpene alcohols are rarely encountered in maize tissues. A genome wide association study further linked an unknown sesquiterpene acid to ZmTPS8 and combined ZmTPS8-ZmCYP71Z19 heterologous enzyme co-expression studies yielded the same product. To consider defensive roles for ZmTPS8, in vitro bioassays with cubebol demonstrated significant antifungal activity against both Fusarium graminearum and Aspergillus parasiticus. As a genetically variable biochemical trait, ZmTPS8 contributes to the cocktail of terpenoid antibiotics present following complex interactions between wounding and fungal elicitation.
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Affiliation(s)
- Evan V. Saldivar
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
- Department of Plant Biology, Carnegie Institution for Science, Stanford University, Palo Alto, CA 94305, USA
| | - Yezhang Ding
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Elly Poretsky
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
| | - Skylar Bird
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
| | - Anna K. Block
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL 32608, USA
| | - Alisa Huffaker
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
| | - Eric A. Schmelz
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
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5
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Wang Z, Chen K, Liu C, Ma L, Li J. Effects of glycosidase on glycoside-bound aroma compounds in grape and cherry juice. JOURNAL OF FOOD SCIENCE AND TECHNOLOGY 2023; 60:761-771. [PMID: 36712203 PMCID: PMC9873860 DOI: 10.1007/s13197-022-05662-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 04/30/2021] [Accepted: 10/17/2021] [Indexed: 01/18/2023]
Abstract
This paper reports the occurrence of six kinds of commercial enzyme hydrolysis effects for use in grape juice and cherry juice, which provide a basis for studying the bound aroma compounds in fruit juice and their application in production. Using headspace solid-phase microextraction combined with GC-MS, a reliable procedure for determining the free and glycosidic-bound volatile compounds has been established. Comparison of these free and bound aroma compounds revealed that non-volatile glycosides, known as aroma precursors, occur at high concentrations in grape and cherry juice. Using six different glycosidase enzymes, 67 volatile compounds were identified in these two juices, including terpenes, C13-norisoprenoids, higher alcohols, esters, C6-compounds, C9-compounds, and phenols. The different enzymes had significant effects on varietal aroma. Creative and AR2000 had similar hydrolysis effects, which contribute greatly to the characteristic aroma of grape juice and cherry juice, significantly enhance the floral and fruity features of fruit juice, and improve aroma complexity in the system. The Creative enzyme can be used as a new choice for studying juice-bound aroma and hydrolysis-bound aroma in fruit and wine production. Supplementary Information The online version contains supplementary material available at 10.1007/s13197-022-05662-3.
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Affiliation(s)
- Zichen Wang
- College of Food Science and Nutritional Engineering, China Agricultural University, No. 17 Tsinghua Dong Road, 100083 Beijing, People’s Republic of China
- Center for Viticulture and Enology, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083 People’s Republic of China
| | - Kai Chen
- College of Food Science and Nutritional Engineering, China Agricultural University, No. 17 Tsinghua Dong Road, 100083 Beijing, People’s Republic of China
- Center for Viticulture and Enology, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083 People’s Republic of China
| | - Cuiping Liu
- Beijing Dragon Seal Wines Co., Ltd., Beijing, 100039 People’s Republic of China
| | - Liyan Ma
- College of Food Science and Nutritional Engineering, China Agricultural University, No. 17 Tsinghua Dong Road, 100083 Beijing, People’s Republic of China
- Supervision, Inspection and Testing Center for Agricultural Products Quality, Ministry of Agriculture, Beijing, 100083 People’s Republic of China
| | - Jingming Li
- College of Food Science and Nutritional Engineering, China Agricultural University, No. 17 Tsinghua Dong Road, 100083 Beijing, People’s Republic of China
- Center for Viticulture and Enology, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083 People’s Republic of China
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6
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Li C, Dong L, Durairaj J, Guan JC, Yoshimura M, Quinodoz P, Horber R, Gaus K, Li J, Setotaw YB, Qi J, De Groote H, Wang Y, Thiombiano B, Floková K, Walmsley A, Charnikhova TV, Chojnacka A, Correia de Lemos S, Ding Y, Skibbe D, Hermann K, Screpanti C, De Mesmaeker A, Schmelz EA, Menkir A, Medema M, Van Dijk ADJ, Wu J, Koch KE, Bouwmeester HJ. Maize resistance to witchweed through changes in strigolactone biosynthesis. Science 2023; 379:94-99. [PMID: 36603079 DOI: 10.1126/science.abq4775] [Citation(s) in RCA: 22] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Maize (Zea mays) is a major staple crop in Africa, where its yield and the livelihood of millions are compromised by the parasitic witchweed Striga. Germination of Striga is induced by strigolactones exuded from maize roots into the rhizosphere. In a maize germplasm collection, we identified two strigolactones, zealactol and zealactonoic acid, which stimulate less Striga germination than the major maize strigolactone, zealactone. We then showed that a single cytochrome P450, ZmCYP706C37, catalyzes a series of oxidative steps in the maize-strigolactone biosynthetic pathway. Reduction in activity of this enzyme and two others involved in the pathway, ZmMAX1b and ZmCLAMT1, can change strigolactone composition and reduce Striga germination and infection. These results offer prospects for breeding Striga-resistant maize.
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Affiliation(s)
- C Li
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - L Dong
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - J Durairaj
- Bioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, Netherlands
| | - J-C Guan
- Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA
| | - M Yoshimura
- Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.,Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland.,Kyoto University, iCeMS, Yoshida Ushinomiya-cho, Sakyo-ku, Kyoto 606-8501, Japan
| | - P Quinodoz
- Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - R Horber
- Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - K Gaus
- Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - J Li
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Y B Setotaw
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - J Qi
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - H De Groote
- International Maize and Wheat Improvement Center (CIMMYT), PO Box 1041-00621, Nairobi, Kenya
| | - Y Wang
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - B Thiombiano
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - K Floková
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands.,Laboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences and Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - A Walmsley
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - T V Charnikhova
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - A Chojnacka
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
| | - S Correia de Lemos
- Bioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, Netherlands.,Plant genomics and transcriptomics group, Institute of Biosciences, Sao Paulo State University, 13506-900 Rio Claro, Brazil
| | - Y Ding
- Section of Cell and Developmental Biology, University of California at San Diego; La Jolla, CA 92093, USA
| | - D Skibbe
- Seeds Research, Syngenta Crop Protection, LLC, Research Triangle Park, NC 27709, USA
| | - K Hermann
- Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - C Screpanti
- Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - A De Mesmaeker
- Syngenta Crop Protection AG, Schaffhauserstrasse 101, CH-4332 Stein, Switzerland
| | - E A Schmelz
- Section of Cell and Developmental Biology, University of California at San Diego; La Jolla, CA 92093, USA
| | - A Menkir
- International Institute of Tropical Agriculture, PMB 5320 Oyo Road, Ibadan, Nigeria
| | - M Medema
- Bioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, Netherlands
| | - A D J Van Dijk
- Bioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, Netherlands
| | - J Wu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - K E Koch
- Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA
| | - H J Bouwmeester
- Plant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, Netherlands
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7
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Palmer L, Chuang L, Siegmund M, Kunert M, Yamamoto K, Sonawane P, O'Connor SE. In vivo characterization of key iridoid biosynthesis pathway genes in catnip (Nepeta cataria). PLANTA 2022; 256:99. [PMID: 36222913 PMCID: PMC9556426 DOI: 10.1007/s00425-022-04012-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 10/04/2022] [Indexed: 06/16/2023]
Abstract
Using virus-induced gene silencing, we demonstrated that the enzymes GES, ISY, and MLPL are responsible for nepetalactone biosynthesis in Nepeta cataria. Nepetalactone is the main iridoid that is found in the Nepeta genus and is well-known for its psychoactive effect on house cats. Moreover, there is a burgeoning interest into the effect of nepetalactone on insects. Although the enzymes for nepetalactone biosynthesis have been biochemically assayed in vitro, validation of the role that these enzymes have in planta has not been demonstrated. Virus-induced gene silencing (VIGS) is a silencing method that relies on transient transformation and is an approach that has been particularly successful when applied to a variety of non-model plants. Here, we use a recently designed visual-marker dependent VIGS system to demonstrate that the nepetalactone biosynthetic enzymes GES, ISY, and MLPL impact nepetalactone biosynthesis in Nepeta cataria.
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Affiliation(s)
- Lira Palmer
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Ling Chuang
- Institute of Botany, Leibniz University Hannover, 30167, Hannover, Germany
| | - Marlen Siegmund
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Maritta Kunert
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Kotaro Yamamoto
- School of Science, Association of International Arts and Science, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama, 236-0027, Japan
| | - Prashant Sonawane
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany
| | - Sarah E O'Connor
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, 07743, Jena, Germany.
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8
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Mittal R, Srivastava G, Ganjewala D. An update on the progress of microbial biotransformation of commercial monoterpenes. Z NATURFORSCH C 2022; 77:225-240. [PMID: 34881551 DOI: 10.1515/znc-2021-0192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2021] [Accepted: 11/14/2021] [Indexed: 01/05/2023]
Abstract
Monoterpenes, a class of isoprenoid compounds, are extensively used in flavor, fragrance, perfumery, and cosmetics. They display many astonishing bioactive properties of biological and pharmacological significance. All monoterpenes are derived from universal precursor geranyl diphosphate. The demand for new monoterpenoids has been increasing in flavor, fragrances, perfumery, and pharmaceuticals. Chemical methods, which are harmful for human and the environment, synthesize most of these products. Over the years, researchers have developed alternative methods for the production of newer monoterpenoids. Microbial biotransformation is one of them, which relied on microbes and their enzymes. It has produced many new desirable commercially important monoterpenoids. A growing number of reports reflect an ever-expanding scope of microbial biotransformation in food and aroma industries. Simultaneously, our knowledge of the enzymology of monoterpene biosynthetic pathways has been increasing, which facilitated the biotransformation of monoterpenes. In this article, we have covered the progress made on microbial biotransformation of commercial monoterpenes with a brief introduction to their biosynthesis. We have collected several reports from authentic web sources, including Google Scholar, Pubmed, Web of Science, and Scopus published in the past few years to extract information on the topic.
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Affiliation(s)
- Ruchika Mittal
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Sector-125, Noida 201303, UP, India
| | - Gauri Srivastava
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Sector-125, Noida 201303, UP, India
| | - Deepak Ganjewala
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Sector-125, Noida 201303, UP, India
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9
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Zhou H, Wang S, Xie HF, Liu G, Shamala LF, Pang J, Zhang Z, Ling TJ, Wei S. Cytosolic Nudix Hydrolase 1 Is Involved in Geranyl β-Primeveroside Production in Tea. FRONTIERS IN PLANT SCIENCE 2022; 13:833682. [PMID: 35646040 PMCID: PMC9131077 DOI: 10.3389/fpls.2022.833682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Accepted: 04/19/2022] [Indexed: 06/15/2023]
Abstract
Geraniol is a potent tea odorant and exists mainly as geranyl glycoside in Camellia sinensis. Understanding the mechanisms of geraniol biosynthesis at molecular levels in tea plants is of great importance for practical improvement of tea aroma. In this study, geraniol and its glycosides from tea plants were examined using liquid chromatography coupled with mass spectrometry. Two candidate geraniol synthase (GES) genes (CsTPS) and two Nudix hydrolase genes (CsNUDX1-cyto and CsNUDX1-chlo) from the tea genome were functionally investigated through gene transcription manipulation and gene chemical product analyses. Our data showed that in tea leaves, levels of geranyl β-primeveroside were dramatically higher than those of geranyl β-glucoside, while free geraniol was undetectable in this study. A tempo-spatial variation of geranyl β-primeveroside abundance in tea plants existed, with high levels in young and green tissues and low levels in mature or non-green tissues. Cytosolic CsNUDX1-cyto showed higher hydrolysis activity of geranyl-pyrophosphate to geranyl-monophosphate (GP) in vitro than did chloroplastidial CsNUDX1-chlo. A transgenic study revealed that expression of CsNUDX1-cyto resulted in significantly more geranyl β-primeveroside in transgenic Nicotiana benthamiana compared with non-transgenic wild-type, whereas expression of CsNUDX1-chlo had no effect. An antisense oligo-deoxynucleotide study confirmed that suppression of CsNUDX1-cyto transcription in tea shoots led to a significant decrease in geranyl β-primeveroside abundance. Additionally, CsNUDX1-cyto transcript levels and geranyl β-primeveroside abundances shared the same tempo-spatial patterns in different organs in the tea cultivar "Shucha Zao," indicating that CsNUDX1-cyto is important for geranyl β-primeveroside formation in tea plants. Results also suggested that neither of the two candidate GES genes in tea plants did not function as GES in transgenic N. benthamiana. All our data indicated that CsNUDX1-cyto is involved in geranyl β-primeveroside production in tea plants. Our speculation about possible conversion from the chemical product of CsNUDX1-cyto to geranyl β-primeveroside in plants was also discussed.
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Affiliation(s)
- Hanchen Zhou
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
- Tea Research Institute, Anhui Academy of Agricultural Sciences, Huangshan, China
| | - Shijie Wang
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Hao-Fen Xie
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Guofeng Liu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
- Henan Provincial Key Laboratory of Tea Plant Biology, Xinyang Normal University, Xinyang, China
| | - Lubobi Ferdinand Shamala
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Jingyi Pang
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Zhengzhu Zhang
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Tie-Jun Ling
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Shu Wei
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
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10
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Biosynthesis and Modulation of Terpenoid Indole Alkaloids in Catharanthus roseus: A Review of Targeting Genes and Secondary Metabolites. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2021. [DOI: 10.22207/jpam.15.4.05] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The medicinal plant C. roseus synthesizes biologically active alkaloids via the terpenoid indole alkaloid (TIAs) biosynthetic pathway. Most of these alkaloids have high therapeutic value, such as vinblastine and vincristine. Plant signaling components, plant hormones, precursors, growth hormones, prenylated proteins, and transcriptomic factors regulate the complex networks of TIA biosynthesis. For many years, researchers have been evaluating the scientific value of the TIA biosynthetic pathway and its potential in commercial applications for market opportunities. Metabolic engineering has revealed the major blocks in metabolic pathways regulated at the molecular level, unknown structures, metabolites, genes, enzyme expression, and regulatory genes. Conceptually, this information is necessary to create transgenic plants and microorganisms for the commercial production of high-value dimer alkaloids, such as vinca alkaloids, vinblastine, and vincristine In this review, we present current knowledge of the regulatory mechanisms of these components in the C. roseus TIA pathway, from genes to metabolites.
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11
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Shi ZK, Gong XW, Zhao JY, Li MG, Han XL, Wen ML. Functional Characterization of a New Bifunctional Terpene Synthase LpNES1 from a Medicinal Plant Laggera pter odonta. J Oleo Sci 2021; 70:1641-1650. [PMID: 34645748 DOI: 10.5650/jos.ess21172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Laggera pterodonta, known in China as 'Choulingdan' for its stimulous odor, has long been used as traditional herbal medicine. The essential oil of L. pterodonta, which exhibits various pharmacological activities, is a rich resource of monoterpenes and sesquiterpenes. To date, however, the terpene synthases responsible for their production remain unknown. In present study, a new terpene synthase gene (LpNES1) was identified from L. pterodonta, transcript level of which was significantly upregulated in response to methyl jasmonate treatment. Recombinant LpNES1 could synthesize (E)-nerolidol and minor β-farnesene from farnesyl diphosphate and linalool from geranyl diphosphate in vitro. Whereas, only sesquiterpenes including (E)-nerolidol and minor β-farnesene were released when LpNES1 was reconstituted in yeast, even coexpressed with a geranyl diphosphate synthase (ERG20WW). Combined with subcellular localization experiment, the result indicated that the cytosol-targeted LpNES1 was responsible for (E)-nerolidol biosynthesis exclusively in L. pterodonta. Additionally, the expression level of LpNES1 gene was more prominent in floral buds than that in other tissues. LpNES1 characterized in present study not only lays the molecular foundation for sesquiterpene biosynthesis of L. pterodonta, but provides a key element for further biosynthesis of bioactive compound in microbes.
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Affiliation(s)
- Zhan-Ku Shi
- National Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University
| | - Xiao-Wei Gong
- National Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University.,R&D Center of China Tobacco Yunnan Industrial Co., Ltd
| | - Jiang-Yuan Zhao
- National Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University
| | - Ming-Gang Li
- National Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University
| | - Xiu-Lin Han
- National Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University
| | - Meng-Liang Wen
- National Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University
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12
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Xu X, Jibran R, Wang Y, Dong L, Flokova K, Esfandiari A, McLachlan ARG, Heiser A, Sutherland-Smith AJ, Brummell DA, Bouwmeester HJ, Dijkwel PP, Hunter DA. Strigolactones regulate sepal senescence in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5462-5477. [PMID: 33970249 DOI: 10.1093/jxb/erab199] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Accepted: 05/08/2021] [Indexed: 05/07/2023]
Abstract
Flower sepals are critical for flower development and vary greatly in life span depending on their function post-pollination. Very little is known about what controls sepal longevity. Using a sepal senescence mutant screen, we identified two Arabidopsis mutants with delayed senescence directly connecting strigolactones with senescence regulation in a novel floral context that hitherto has not been explored. The mutations were in the strigolactone biosynthetic gene MORE AXILLARY GROWTH1 (MAX1) and in the strigolactone receptor gene DWARF14 (AtD14). The mutation in AtD14 changed the catalytic Ser97 to Phe in the enzyme active site, which is the first mutation of its kind in planta. The lesion in MAX1 was in the haem-iron ligand signature of the cytochrome P450 protein, converting the highly conserved Gly469 to Arg, which was shown in a transient expression assay to substantially inhibit the activity of MAX1. The two mutations highlighted the importance of strigolactone activity for driving to completion senescence initiated both developmentally and in response to carbon-limiting stress, as has been found for the more well-known senescence-associated regulators ethylene and abscisic acid. Analysis of transcript abundance in excised inflorescences during an extended night suggested an intricate relationship among sugar starvation, senescence, and strigolactone biosynthesis and signalling.
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Affiliation(s)
- Xi Xu
- Massey University, School of Fundamental Sciences, Palmerston North, New Zealand
- The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand
| | - Rubina Jibran
- The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand
| | - Yanting Wang
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Lemeng Dong
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Kristyna Flokova
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Azadeh Esfandiari
- The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand
| | - Andrew R G McLachlan
- The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand
| | - Axel Heiser
- Hopkirk Research Institute, AgResearch Limited, Palmerston North, New Zealand
| | | | - David A Brummell
- The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand
| | - Harro J Bouwmeester
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Paul P Dijkwel
- Massey University, School of Fundamental Sciences, Palmerston North, New Zealand
| | - Donald A Hunter
- The New Zealand Institute for Plant and Food Research Limited, Palmerston North, New Zealand
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13
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Dong L, Almeida A, Pollier J, Khakimov B, Bassard JE, Miettinen K, Stærk D, Mehran R, Olsen CE, Motawia MS, Goossens A, Bak S. An independent evolutionary origin for insect deterrent cucurbitacins in Iberis amara. Mol Biol Evol 2021; 38:4659-4673. [PMID: 34264303 PMCID: PMC8557398 DOI: 10.1093/molbev/msab213] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Pieris rapae and Phyllotreta nemorum are Brassicaceae specialists, but do not feed on Iberis amara spp. that contain cucurbitacins. The cucurbitacins are highly oxygenated triterpenoid, occurring widespread in cucurbitaceous species and in a few other plant families. Using de-novo assembled transcriptomics from I. amara, gene co-expression analysis and comparative genomics, we unraveled the evolutionary origin of the insect deterrent cucurbitacins in I. amara. Phylogenetic analysis of five oxidosqualene cyclases and heterologous expression allowed us to identify the first committed enzyme in cucurbitacin biosynthesis in I. amara, cucurbitadienol synthase (IaCPQ). In addition, two species-specific cytochrome P450s (CYP708A16 and CYP708A15) were identified that catalyse the unique C16 and C22 hydroxylation of the cucurbitadienol backbone, enzymatic steps that have not been reported before. Furthermore, the draft genome assembly of I. amara showed that the IaCPQ was localized to the same scaffold together with CYP708A15 but spanning over 100 kb, this contrasts with the highly organized cucurbitacin gene cluster in the cucurbits. These results reveal that cucurbitacin biosynthesis has evolved convergently via different biosynthetic routes in different families rather than through divergence from an ancestral pathway. This study thus provides new insight into the mechanism of recurrent evolution and diversification of a plant defensive chemical.
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Affiliation(s)
- Lemeng Dong
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark.,Plant Hormone Biology group, Swammerdam Institute for Life Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, the Netherlands
| | - Aldo Almeida
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Jacob Pollier
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium.,VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Bekzod Khakimov
- Department of Food Science, University of Copenhagen, Rolighedsvej 26, DK-1958 Frederiksberg C, Denmark
| | - Jean-Etienne Bassard
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Karel Miettinen
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium.,VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Dan Stærk
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Rahimi Mehran
- Plant Hormone Biology group, Swammerdam Institute for Life Science, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, the Netherlands
| | - Carl Erik Olsen
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Mohammed Saddik Motawia
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Alain Goossens
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium.,VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Søren Bak
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
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14
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Wang X, Chen J, Zhang J, Zhou Y, Zhang Y, Wang F, Li X. Engineering Escherichia coli for production of geraniol by systematic synthetic biology approaches and laboratory-evolved fusion tags. Metab Eng 2021; 66:60-67. [PMID: 33865982 DOI: 10.1016/j.ymben.2021.04.008] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 03/23/2021] [Accepted: 04/11/2021] [Indexed: 12/16/2022]
Abstract
Geraniol is a valuable monoterpene extensively used in the fragrance, food, and cosmetic industries. Increasing environmental concerns and supply gaps have motivated efforts to advance the microbial production of geraniol from renewable feedstocks. In this study, we first constructed a platform geraniol Escherichia coli strain by bioprospecting the key enzymes geranyl diphosphate synthase (GPPS) and geraniol synthase (GES) and selection of a host cell background. This strategy led to a 46.4-fold increase in geraniol titer to 964.3 mg/L. We propose that the expression level of eukaryotic GES can be further optimized through fusion tag evolution engineering. To this end, we manipulated GES to maximize flux towards the targeted product geraniol from precursor geranyl diphosphate (GPP) via the utilization of fusion tags. Additionally, we developed a high-throughput screening system to monitor fusion tag variants. This common plug-and-play toolbox proved to be a robust approach for systematic modulation of protein expression and can be used to tune biosynthetic metabolic pathways. Finally, by combining a modified E1* fusion tag, we achieved 2124.1 mg/L of geraniol in shake flask cultures, which reached 27.2% of the maximum theoretical yield and was the highest titer ever reported. We propose that this strategy has set a good reference for enhancing a broader range of terpenoid production in microbial cell factories, which might open new possibilities for the bio-production of other valuable chemicals.
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Affiliation(s)
- Xun Wang
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Jiaming Chen
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Jia Zhang
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Yujunjie Zhou
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Yu Zhang
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Fei Wang
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Xun Li
- Jiangsu Provincial Key Lab for the Chemistry and Utilization of Agro-forest Biomass, Nanjing Forestry University, Nanjing, 210037, China; Jiangsu Key Laboratory of Biomass-based Green Fuels and Chemicals, Nanjing Forestry University, Nanjing, 210037, China; College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China.
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15
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Duan Y, Liu J, Du Y, Pei X, Li M. Aspergillus oryzae Biosynthetic Platform for de Novo Iridoid Production. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:2501-2511. [PMID: 33599481 DOI: 10.1021/acs.jafc.0c06563] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The iridoids and their derivatives monoterpene indole alkaloids (MIAs) are two broad classes of plant-derived natural products with valuable pharmaceutical properties. However, the poor source limited their application. Nepetalactol, a common iridoid scaffold of MIAs, was heterologously produced in Saccharomyces cerevisiae. Although the optimization of nepetalactol production in S. cerevisiae was achieved by metabolic engineering, the inherent metabolic constraints impose a restriction on the production. Herein, we developed a high nepetalactol-producing Aspergillus oryzae platform strain. First, the co-expression of 5 nepetalactol biosynthetic genes, in a high isopentenyl pyrophosphate (IPP)-producing strain A. oryzae AK2, succeeded in the biosynthesis of nepetalactol. Second, the improvement of the IPP supply and the suppression of the byproduct citronellol formation were simultaneously achieved. Finally, the highest titer of nepetalactol of 7.2 mg/L was obtained with the engineered strain, after the optimization of the carbon source. To the best of our knowledge, this is the highest reported titer of nepetalactol in microbial cells. The developed A. oryzae strain represents an attractive biosynthetic platform host for the de novo production of iridoids and MIAs.
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Affiliation(s)
- Yali Duan
- Hubei International Scientific and Technological Cooperation Base of Traditional Fermented Foods, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- Key Laboratory of Environment Correlative Dietology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Jiawei Liu
- Hubei International Scientific and Technological Cooperation Base of Traditional Fermented Foods, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- Key Laboratory of Environment Correlative Dietology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Yun Du
- Hubei International Scientific and Technological Cooperation Base of Traditional Fermented Foods, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- Key Laboratory of Environment Correlative Dietology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Xiaolin Pei
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, Zhejiang 310012, China
| | - Mu Li
- Hubei International Scientific and Technological Cooperation Base of Traditional Fermented Foods, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- Key Laboratory of Environment Correlative Dietology, Ministry of Education, Huazhong Agricultural University, Wuhan, Hubei 430070, China
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
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16
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Zhang X, Teixeira da Silva JA, Niu M, Zhang T, Liu H, Zheng F, Yuan Y, Li Y, Fang L, Zeng S, Ma G. Functional characterization of an Indian sandalwood (Santalum album L.) dual-localized bifunctional nerolidol/linalool synthase gene involved in stress response. PHYTOCHEMISTRY 2021; 183:112610. [PMID: 33383368 DOI: 10.1016/j.phytochem.2020.112610] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Revised: 12/01/2020] [Accepted: 12/01/2020] [Indexed: 06/12/2023]
Abstract
Essential oils extracted from the heartwood of Indian sandalwood (Santalum album L.) contain linalool and nerolidol as minor components. However, nerolidol/linalool synthase (NES/LIS), which produce linalool and nerolidol, have yet to be characterized in sandalwood. Using a transcriptomic-based approach, a terpene synthase gene was screened from unigenes of transcriptome data derived from S. album seedlings exposed to low temperature (4 °C). The enzyme encoded by these complementary DNAs belongs to the TPS-b clade. Recombinant SaNES/LIS is a bifunctional enzyme that can catalyze the formation of (E)-nerolidol from farnesyl diphosphate and linalool from geranyl diphosphate, respectively. Whereas SaNES/LIS was primarily localized in chloroplastids, both as granular fluorescence and as diffuse fluorescence, it was also detected in the cytosol of a limited number of cells. Agrobacterium tumefaciens-mediated transient gene expression in planta produced the same terpene products as those obtained in vitro. Real-time PCR analysis showed the highest expression of SaNES/LIS in fruits, with about a three-fold higher level than in leaves, followed by flowers, heartwood and roots. SaNES/LIS transcripts were differentially activated in different tissues in response to methyl jasmonate, cold, high temperature, strong illumination, and drought stress. Our results provide novel insight into the role of sandalwood terpenoids in response to various environmental stresses.
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Affiliation(s)
- Xinhua Zhang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
| | - Jaime A Teixeira da Silva
- Independent Researcher, P. O. Box 7, Miki Cho Post Office, Ikenobe 3011-2, Kagawa-Ken, 761-0799, Japan
| | - Meiyun Niu
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Ting Zhang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Huanfang Liu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Feng Zheng
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Yunfei Yuan
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Yuan Li
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Lin Fang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Songjun Zeng
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Guohua Ma
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
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17
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Bao T, Shadrack K, Yang S, Xue X, Li S, Wang N, Wang Q, Wang L, Gao X, Cronk Q. Functional Characterization of Terpene Synthases Accounting for the Volatilized-Terpene Heterogeneity in Lathyrus odoratus Cultivar Flowers. PLANT & CELL PHYSIOLOGY 2020; 61:1733-1749. [PMID: 32726442 DOI: 10.1093/pcp/pcaa100] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 07/16/2020] [Indexed: 06/11/2023]
Abstract
Lathyrus odoratus (sweet pea) is an ornamental plant with exceptional floral scent, previously used as an experimental organism in the early development of Mendelian genetics. However, its terpene synthases (TPSs), which act as metabolic gatekeepers in the biosynthesis of volatile terpenoids, remain to be characterized. Auto-Headspace Solid-phase Microextraction/Gas chromatography-mass spectrometry analysis of floral volatile terpene constituents from seven sweet pea cultivars identified α-bergamotene, linalool, (-)-α-cubebene, geraniol, β-caryophyllene and β-sesquiphellandrene as the dominant compounds. RNA sequencing was performed to profile the transcriptome of L. odoratus flowers. Bioinformatic analysis identified eight TPS genes (acronymed as LoTPS) that were successfully cloned, heterologously expressed and functionally analyzed. LoTPS4 and LoTPS7, belonging to the TPS-b clade, biochemically catalyzed the formation of monoterpenes and sesquiterpenes. LoTPS3 and LoTPS8, placed in the TPS-a clade, also generated monoterpenes and sesquiterpenes, while LoTPS12 belonging to the TPS-g clade showed linalool/nerolidol synthase activity. Notably, biochemical assays of the recombinant LoTPS proteins revealed their catalytic promiscuity, and the enzymatic products were basically consistent with major volatile compounds released from sweet pea flowers. The data from our study lay the foundation for the chemical ecology, molecular genetics and biotechnological improvement of sweet pea and other legumes (Fabaceae).
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Affiliation(s)
- Tingting Bao
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Kimani Shadrack
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
- Department of Biological and Physical Sciences, Karatina University, Karatina, Kenya
| | - Song Yang
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Xinxin Xue
- Department of Botany, University of British Columbia, Vancouver, BC, Canada
| | - Shuying Li
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Ning Wang
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Qiuyue Wang
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Li Wang
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Xiang Gao
- Key Laboratory of Molecular Epigenetics of MOE and Institute of Genetics & Cytology, Northeast Normal University, Changchun, China
| | - Quentin Cronk
- Department of Botany, University of British Columbia, Vancouver, BC, Canada
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18
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Zhao C, Yu Z, da Silva JAT, He C, Wang H, Si C, Zhang M, Zeng D, Duan J. Functional Characterization of a Dendrobium officinale Geraniol Synthase DoGES1 Involved in Floral Scent Formation. Int J Mol Sci 2020; 21:E7005. [PMID: 32977586 PMCID: PMC7582308 DOI: 10.3390/ijms21197005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 09/16/2020] [Accepted: 09/21/2020] [Indexed: 02/01/2023] Open
Abstract
Floral scent is a key ornamental trait that determines the quality and commercial value of orchids. Geraniol, an important volatile monoterpene in orchids that attracts pollinators, is also involved in responses to stresses but the geraniol synthase (GES) responsible for its synthesis in the medicinal orchid Dendrobium officinale has not yet been identified. In this study, three potential geraniol synthases were mined from the D. officinale genome. DoGES1, which was localized in chloroplasts, was characterized as a geraniol synthase. DoGES1 was highly expressed in flowers, especially in petals. DoGES1 transcript levels were high in the budding stage of D. officinale flowers at 11:00 a.m. DoGES1 catalyzed geraniol in vitro, and transient expression of DoGES1 in Nicotiana benthamiana leaves resulted in the accumulation of geraniol in vivo. These findings on DoGES1 advance our understanding of geraniol biosynthesis in orchids, and lay the basis for genetic modification of floral scent in D. officinale or in other ornamental orchids.
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Affiliation(s)
- Conghui Zhao
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
- College of Life Sciences, University of Chinese Academy of Sciences, No. 19A Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Zhenming Yu
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou 510650, China
| | | | - Chunmei He
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
| | - Haobin Wang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
| | - Can Si
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
| | - Mingze Zhang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
| | - Danqi Zeng
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
| | - Jun Duan
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (C.Z.); (Z.Y.); (C.H.); (H.W.); (C.S.); (M.Z.); (D.Z.)
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou 510650, China
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19
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Sun P, Dégut C, Réty S, Caissard JC, Hibrand-Saint Oyant L, Bony A, Paramita SN, Conart C, Magnard JL, Jeauffre J, Abd-El-Haliem AM, Marie-Magdelaine J, Thouroude T, Baltenweck R, Tisné C, Foucher F, Haring M, Hugueney P, Schuurink RC, Baudino S. Functional diversification in the Nudix hydrolase gene family drives sesquiterpene biosynthesis in Rosa × wichurana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 104:185-199. [PMID: 32639596 DOI: 10.1111/tpj.14916] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 06/03/2020] [Accepted: 06/24/2020] [Indexed: 05/25/2023]
Abstract
Roses use a non-canonical pathway involving a Nudix hydrolase, RhNUDX1, to synthesize their monoterpenes, especially geraniol. Here we report the characterization of another expressed NUDX1 gene from the rose cultivar Rosa x wichurana, RwNUDX1-2. In order to study the function of the RwNUDX1-2 protein, we analyzed the volatile profiles of an F1 progeny generated by crossing R. chinensis cv. 'Old Blush' with R. x wichurana. A correlation test of the volatilomes with gene expression data revealed that RwNUDX1-2 is involved in the biosynthesis of a group of sesquiterpenoids, especially E,E-farnesol, in addition to other sesquiterpenes. In vitro enzyme assays and heterologous in planta functional characterization of the RwNUDX1-2 gene corroborated this result. A quantitative trait locus (QTL) analysis was performed using the data of E,E-farnesol contents in the progeny and a genetic map was constructed based on gene markers. The RwNUDX1-2 gene co-localized with the QTL for E,E-farnesol content, thereby confirming its function in sesquiterpenoid biosynthesis in R. x wichurana. Finally, in order to understand the structural bases for the substrate specificity of rose NUDX proteins, the RhNUDX1 protein was crystallized, and its structure was refined to 1.7 Å. By molecular modeling of different rose NUDX1 protein complexes with their respective substrates, a structural basis for substrate discrimination by rose NUDX1 proteins is proposed.
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Affiliation(s)
- Pulu Sun
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
- Green Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, The Netherlands
| | - Clément Dégut
- Expression Génétique Microbienne, UMR 8261, CNRS, Université de Paris, Institut de Biologie Physico-Chimique (IBPC), Paris, 75005, France
| | - Stéphane Réty
- Univ Lyon, ENS de Lyon, Univ Claude Bernard, CNRS UMR 5239, INSERM U1210, LBMC, 46 Allée d'Italie Site Jacques Monod, Lyon, F-69007, France
| | - Jean-Claude Caissard
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
| | | | - Aurélie Bony
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
| | - Saretta N Paramita
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
| | - Corentin Conart
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
| | - Jean-Louis Magnard
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
| | - Julien Jeauffre
- IRHS-UMR1345, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, Beaucouzé, 49071, France
| | - Ahmed M Abd-El-Haliem
- Green Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, The Netherlands
| | - Jordan Marie-Magdelaine
- IRHS-UMR1345, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, Beaucouzé, 49071, France
| | - Tatiana Thouroude
- IRHS-UMR1345, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, Beaucouzé, 49071, France
| | | | - Carine Tisné
- Expression Génétique Microbienne, UMR 8261, CNRS, Université de Paris, Institut de Biologie Physico-Chimique (IBPC), Paris, 75005, France
| | - Fabrice Foucher
- IRHS-UMR1345, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, Beaucouzé, 49071, France
| | - Michel Haring
- Green Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, The Netherlands
| | - Philippe Hugueney
- Université de Strasbourg, INRAE, SVQV UMR-A 1131, Colmar, F-68000, France
| | - Robert C Schuurink
- Green Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, The Netherlands
| | - Sylvie Baudino
- Univ Lyon, UJM-Saint-Etienne, CNRS, BVpam FRE 3727, Saint-Etienne, F-42023, France
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20
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Metabolic Engineering of the Native Monoterpene Pathway in Spearmint for Production of Heterologous Monoterpenes Reveals Complex Metabolism and Pathway Interactions. Int J Mol Sci 2020; 21:ijms21176164. [PMID: 32859057 PMCID: PMC7504178 DOI: 10.3390/ijms21176164] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 08/19/2020] [Accepted: 08/24/2020] [Indexed: 12/22/2022] Open
Abstract
Spearmint produces and stores large amounts of monoterpenes, mainly limonene and carvone, in glandular trichomes and is the major natural source of these compounds. Towards producing heterologous monoterpenes in spearmint, we first reduced the flux into the native limonene pathway by knocking down the expression of limonene synthase (MsLS) by RNAi method. The MsLS RNAi lines exhibited a huge reduction in the synthesis of limonene and carvone. Detailed GC-MS and LC-MS analysis revealed that MsLS RNAi plants also showed an increase in sesquiterpene, phytosterols, fatty acids, flavonoids, and phenolic metabolites, suggesting an interaction between the MEP, MVA shikimate and fatty acid pathways in spearmint. Three different heterologous monoterpene synthases namely, linalool synthase and myrcene synthase from Picea abies and geraniol synthase from Cananga odorata were cloned and introduced independently into the MsLS RNAi mutant background. The expression of these heterologous terpene synthases resulted mainly in production of monoterpene derivatives. Of all the introduced monoterpenes geraniol showed the maximum number of derivatives. Our results provide new insights into MEP pathway interactions and regulation and reveals the existence of mechanisms for complex metabolism of monoterpenes in spearmint.
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21
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Shukurova MK, Asikin Y, Chen Y, Kusano M, Watanabe KN. Profiling of Volatile Organic Compounds in Wild Indigenous Medicinal Ginger ( Zingiber barbatum Wall.) from Myanmar. Metabolites 2020; 10:E248. [PMID: 32549365 PMCID: PMC7344531 DOI: 10.3390/metabo10060248] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 06/08/2020] [Accepted: 06/08/2020] [Indexed: 11/17/2022] Open
Abstract
The emissions of volatile organic compounds (VOCs) strongly depend on the plant species and are differently represented in specific taxa. VOCs have a degree of chemical diversity and also can serve as chemotaxonomic markers. Zingiber barbatum Wall. is a wild medicinal ginger plant endemic to Myanmar whose VOC composition has never been screened before. In this study, we screened the rhizome of Z. barbatum to identify the VOC composition by the application of gas chromatography combined with time-of-flight-mass spectrometry (GC-TOF-MS). The resulting VOC profile of Z. barbatum showed that it consists mainly of monoterpenes (21%) and sesquiterpenes (30%). Intraspecific similarities and dissimilarities were found to exist between Z. barbatum genotypes in terms of VOC composition. Four accessions (ZO191, ZO223, ZO217, and the control accession ZO105) collected from the Shan State and Mandalay region of Myanmar were found to share a similar VOC profile, while two accessions (ZO64 and ZO160) collected from the Bago region were found to vary in their VOC profiles compared with the control accession. The two identified compounds, i.e., α-bergamotene and β-(E)-guaiene may serve as discriminative chemical markers for the characterization of Z. barbatum species collected in these three geographical regions of Myanmar. This study represents a first attempt to identify and describe the VOCs in the medicinal species Z. barbatum that have not been reported to date.
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Affiliation(s)
- Musavvara Kh. Shukurova
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki 305-8572, Japan;
| | - Yonathan Asikin
- Department of Bioscience and Biotechnology, Faculty of Agriculture, University of the Ryukyus, Okinawa 903-0213, Japan;
| | - Yanhang Chen
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki 305-8572, Japan;
| | - Miyako Kusano
- Faculty of Life and Environmental Science, University of Tsukuba, Ibaraki 305-8572, Japan; (M.K.); (K.N.W.)
- Tsukuba-Plant Innovation Research Center, University of Tsukuba, Ibaraki 305-8572, Japan
- RIKEN Center for Sustainable Resource Science, Kanagawa 230-0045, Japan
| | - Kazuo N. Watanabe
- Faculty of Life and Environmental Science, University of Tsukuba, Ibaraki 305-8572, Japan; (M.K.); (K.N.W.)
- Tsukuba-Plant Innovation Research Center, University of Tsukuba, Ibaraki 305-8572, Japan
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22
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Zhang T, Guo Y, Shi X, Yang Y, Chen J, Zhang Q, Sun M. Overexpression of LiTPS2 from a cultivar of lily (Lilium 'Siberia') enhances the monoterpenoids content in tobacco flowers. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 151:391-399. [PMID: 32278293 DOI: 10.1016/j.plaphy.2020.03.048] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2019] [Revised: 03/10/2020] [Accepted: 03/28/2020] [Indexed: 05/17/2023]
Abstract
Lily, a famous cut flower with highly fragrance, has high ornamental and economic values. Monoterpenes are the main components contributing to its fragrance, and terpene synthase (TPS) genes play critical roles in the biosynthesis of monoterpenoids. To understand the function of TPS and to explore the molecular mechanism of floral scent in cultivar Lilium 'Siberia', transcriptomes of petal at different flowering stages and leaf were obtained by RNA sequencing and three unigenes related to TPS genes were selected for further validation. Quantitative real-time PCR showed that the expression level of LiTPS2 was greater than that of the other two TPS genes. Phylogenetic analysis indicated that LiTPS2 belonged to the TPSb subfamily, which was responsible for monoterpenes synthesis. Subcellular localization demonstrated that LiTPS2 was located in the chloroplasts. Furthermore, functional characterization showed that LiTPS2 utilized both geranyl pyrophosphate (GPP) and farnesyl pyrophosphate (FPP) to produce monoterpenoids such as linalool and sesquiterpenes like trans-nerolidol, respectively. Ectopic expression in transgenic tobacco plants suggested that the amount of linalool from the flowers of transgenic plants was 2-3 fold higher than that of wild-type plants. And the emissions of myrcene and (E)-β-ocimene were also accumulated from the flowers of LiTPS2 transgenic lines. Surprisingly, these three compounds were the main fragrance components of oriental lily hybrids. Our results indicated that LiTPS2 contributed to the production of monoterpenes and could effectively regulate the aroma of Lilium cultivars, laying the foundation for biotechnological modification of floral scent profiles.
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Affiliation(s)
- Tengxun Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China
| | - Yanhong Guo
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China
| | - Xuejun Shi
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China
| | - Yongjuan Yang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China
| | - Juntong Chen
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China
| | - Qixiang Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China; Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China
| | - Ming Sun
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, China.
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23
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Zhou F, Pichersky E. The complete functional characterisation of the terpene synthase family in tomato. THE NEW PHYTOLOGIST 2020; 226:1341-1360. [PMID: 31943222 PMCID: PMC7422722 DOI: 10.1111/nph.16431] [Citation(s) in RCA: 87] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 01/05/2020] [Indexed: 05/14/2023]
Abstract
Analysis of the updated reference tomato genome found 34 full-length TPS genes and 18 TPS pseudogenes. Biochemical analysis has now identified the catalytic activities of all enzymes encoded by the 34 TPS genes: one isoprene synthase, 10 exclusively or predominantly monoterpene synthases, 17 sesquiterpene synthases and six diterpene synthases. Among the monoterpene and sesquiterpene and diterpene synthases, some use trans-prenyl diphosphates, some use cis-prenyl diphosphates and some use both. The isoprene synthase is cytosolic; six monoterpene synthases are plastidic, and four are cytosolic; the sesquiterpene synthases are almost all cytosolic, with the exception of one found in the mitochondria; and three diterpene synthases are found in the plastids, one in the cytosol and two in the mitochondria. New trans-prenyltransferases (TPTs) were characterised; together with previously characterised TPTs and cis-prenyltransferases (CPTs), tomato plants can make all cis and trans C10 , C15 and C20 prenyl diphosphates. Every type of plant tissue examined expresses some TPS genes and some TPTs and CPTs. Phylogenetic comparison of the TPS genes from tomato and Arabidopsis shows expansions in each clade of the TPS gene family in each lineage (and inferred losses), accompanied by changes in subcellular localisations and substrate specificities.
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Affiliation(s)
- Fei Zhou
- Department of Molecular, Cellular, and Developmental BiologyUniversity of MichiganAnn ArborMI48109USA
| | - Eran Pichersky
- Department of Molecular, Cellular, and Developmental BiologyUniversity of MichiganAnn ArborMI48109USA
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24
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Nagegowda DA, Gupta P. Advances in biosynthesis, regulation, and metabolic engineering of plant specialized terpenoids. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 294:110457. [PMID: 32234216 DOI: 10.1016/j.plantsci.2020.110457] [Citation(s) in RCA: 89] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2019] [Revised: 02/18/2020] [Accepted: 02/22/2020] [Indexed: 05/28/2023]
Abstract
Plant specialized terpenoids are natural products that have no obvious role in growth and development, but play many important functional roles to improve the plant's overall fitness. Besides, plant specialized terpenoids have immense value to humans due to their applications in fragrance, flavor, cosmetic, and biofuel industries. Understanding the fundamental aspects involved in the biosynthesis and regulation of these high-value molecules in plants not only paves the path to enhance plant traits, but also facilitates homologous or heterologous engineering for overproduction of target molecules of importance. Recent developments in functional genomics and high-throughput analytical techniques have led to unraveling of several novel aspects involved in the biosynthesis and regulation of plant specialized terpenoids. The knowledge thus derived has been successfully utilized to produce target specialized terpenoids of plant origin in homologous or heterologous host systems by metabolic engineering and synthetic biology approaches. Here, we provide an overview and highlights on advances related to the biosynthetic steps, regulation, and metabolic engineering of plant specialized terpenoids.
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Affiliation(s)
- Dinesh A Nagegowda
- Molecular Plant Biology and Biotechnology Lab, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bengaluru, 560065, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India.
| | - Priyanka Gupta
- Molecular Plant Biology and Biotechnology Lab, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bengaluru, 560065, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India
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25
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Lin CY, Eudes A. Strategies for the production of biochemicals in bioenergy crops. BIOTECHNOLOGY FOR BIOFUELS 2020; 13:71. [PMID: 32318116 PMCID: PMC7158082 DOI: 10.1186/s13068-020-01707-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 04/02/2020] [Indexed: 05/12/2023]
Abstract
Industrial crops are grown to produce goods for manufacturing. Rather than food and feed, they supply raw materials for making biofuels, pharmaceuticals, and specialty chemicals, as well as feedstocks for fabricating fiber, biopolymer, and construction materials. Therefore, such crops offer the potential to reduce our dependency on petrochemicals that currently serve as building blocks for manufacturing the majority of our industrial and consumer products. In this review, we are providing examples of metabolites synthesized in plants that can be used as bio-based platform chemicals for partial replacement of their petroleum-derived counterparts. Plant metabolic engineering approaches aiming at increasing the content of these metabolites in biomass are presented. In particular, we emphasize on recent advances in the manipulation of the shikimate and isoprenoid biosynthetic pathways, both of which being the source of multiple valuable compounds. Implementing and optimizing engineered metabolic pathways for accumulation of coproducts in bioenergy crops may represent a valuable option for enhancing the commercial value of biomass and attaining sustainable lignocellulosic biorefineries.
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Affiliation(s)
- Chien-Yuan Lin
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Aymerick Eudes
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
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Cao GH, Li ZD, Wang XF, Zhang X, Zhao RH, Gu W, Chen D, Yu J, He S. Phosphate transporters, PnPht1;1 and PnPht1;2 from Panax notoginseng enhance phosphate and arsenate acquisition. BMC PLANT BIOLOGY 2020; 20:124. [PMID: 32197586 PMCID: PMC7083058 DOI: 10.1186/s12870-020-2316-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 02/27/2020] [Indexed: 05/10/2023]
Abstract
BACKGROUND Panax notoginseng is a medicinally important Chinese herb with a long history of cultivation and clinical application. The planting area is mainly distributed in Wenshan Prefecture, where the quality and safety of P. notoginseng have been threatened by high concentration of arsenic (As) from the soil. The roles of phosphate (Pi) transporters involved in Pi acquisition and arsenate (AsV) tolerance were still unclear in this species. RESULTS In this study, two open reading frames (ORFs) of PnPht1;1 and PnPht1;2 separated from P. notoginseng were cloned based on RNA-seq, which encoded 527 and 541 amino acids, respectively. The results of relative expression levels showed that both genes responded to the Pi deficiency or As exposure, and were highly upregulated. Heterologous expression in Saccharomyces cerevisiae MB192 revealed that PnPht1;1 and PnPht1;2 performed optimally in complementing the yeast Pi-transport defect, particularly in PnPht1;2. Cells expressing PnPht1;2 had a stronger AsV tolerance than PnPht1;1-expressing cells, and accumulated less As in cells under a high-Pi concentration. Combining with the result of plasma membrane localization, these data confirmed that transporters PnPht1;1 and PnPht1;2 were putative high-affinity H+/H2PO4- symporters, mediating the uptake of Pi and AsV. CONCLUSION PnPht1;1 and PnPht1;2 encoded functional plasma membrane-localized transporter proteins that mediated a putative high-affinity Pi/H+ symport activity. Expression of PnPht1;1 or PnPht1;2 in mutant strains could enhance the uptake of Pi and AsV, that is probably responsible for the As accumulation in the roots of P. notoginseng.
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Affiliation(s)
- Guan-Hua Cao
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
| | - Ze-Dong Li
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Xi-Fu Wang
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Xue Zhang
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Rong-Hua Zhao
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Wen Gu
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Di Chen
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Jie Yu
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China.
| | - Sen He
- College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China.
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Cao GH, He S, Chen D, Li T, Zhao ZW. EpABC Genes in the Adaptive Responses of Exophiala pisciphila to Metal Stress: Functional Importance and Relation to Metal Tolerance. Appl Environ Microbiol 2019; 85:e01844-19. [PMID: 31540987 PMCID: PMC6856334 DOI: 10.1128/aem.01844-19] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 09/14/2019] [Indexed: 11/20/2022] Open
Abstract
Exophiala pisciphila is one of the dominant dark septate endophytes (DSEs) colonizing metal-polluted slag heaps in southwest China. It shows numerous super-metal-tolerant characteristics, but the molecular mechanisms involved remain largely unknown. In the present study, the functional roles of a specific set of ATP-binding cassette (ABC) transporters in E. pisciphila were characterized. In total, 26 EpABC genes belonging to 6 subfamilies (ABCA to ABCG) were annotated in previous transcriptome sequencing libraries, and all were regulated by metal ions (Pb, Zn, and Cd), which was dependent on the metal species and/or concentrations tested. The results from the heterologous expression of 3 representative EpABC genes confirmed that the expression of EpABC2.1, EpABC3.1, or EpABC4.1 restored the growth of metal-sensitive mutant Saccharomyces cerevisiae strains and significantly improved the tolerance of Arabidopsis thaliana to Pb, Zn, and Cd. Interestingly, the expression of the 3 EpABC genes further altered metal (Pb, Zn, and Cd) uptake and accumulation and promoted growth by alleviating the inhibitory activity in yeast and thale cress caused by toxic ions. These functions along with their vacuolar location suggest that the 3 EpABC transporters may enhance the detoxification of vacuolar compartmentation via transport activities across their membranes. In conclusion, the 26 annotated EpABC transporters may play a major role in maintaining the homeostasis of various metal ions in different cellular compartments, conferring an extreme adaptative advantage to E. pisciphila in metal-polluted slag heaps.IMPORTANCE Many ABC transporters and their functions have been identified in animals and plants. However, little is known about ABC genes in filamentous fungi, especially DSEs, which tend to dominantly colonize the roots of plants growing in stressed environments. Our results deepen the understanding of the function of the ABC genes of a super-metal-tolerant DSE (E. pisciphila) in enhancing its heavy metal resistance and detoxification. Furthermore, the genetic resources of DSEs, e.g., numerous EpABC genes, especially from super-metal-tolerant strains in heavy metal-polluted environments, can be directly used for transgenic applications to improve tolerance and phytoextraction potential.
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Affiliation(s)
- Guan-Hua Cao
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
- School of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Sen He
- School of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Di Chen
- School of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Tao Li
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
| | - Zhi-Wei Zhao
- State Key Laboratory of Conservation and Utilization for Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
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Sun G, Strebl M, Merz M, Blamberg R, Huang FC, McGraphery K, Hoffmann T, Schwab W. Glucosylation of the phytoalexin N-feruloyl tyramine modulates the levels of pathogen-responsive metabolites in Nicotiana benthamiana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 100:20-37. [PMID: 31124249 DOI: 10.1111/tpj.14420] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Revised: 05/07/2019] [Accepted: 05/14/2019] [Indexed: 05/03/2023]
Abstract
Enzyme promiscuity, a common property of many uridine diphosphate sugar-dependent glycosyltransferases (UGTs) that convert small molecules, significantly hinders the identification of natural substrates and therefore the characterization of the physiological role of enzymes. In this paper we present a simple but effective strategy to identify endogenous substrates of plant UGTs using LC-MS-guided targeted glycoside analysis of transgenic plants. We successfully identified natural substrates of two promiscuous Nicotiana benthamiana UGTs (NbUGT73A24 and NbUGT73A25), orthologues of pathogen-induced tobacco UGT (TOGT) from Nicotiana tabacum, which is involved in the hypersensitive reaction. While in N. tabacum, TOGT glucosylated scopoletin after treatment with salicylate, fungal elicitors and the tobacco mosaic virus, NbUGT73A24 and NbUGT73A25 produced glucosides of phytoalexin N-feruloyl tyramine, which may strengthen cell walls to prevent the intrusion of pathogens, and flavonols after agroinfiltration of the corresponding genes in N. benthamiana. Enzymatic glucosylation of fractions of a physiological aglycone library confirmed the biological substrates of UGTs. In addition, overexpression of both genes in N. benthamiana produced clear lesions on the leaves and led to a significantly reduced content of pathogen-induced plant metabolites such as phenylalanine and tryptophan. Our results revealed some additional biological functions of TOGT enzymes and indicated a multifunctional role of UGTs in plant resistance.
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Affiliation(s)
- Guangxin Sun
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Michael Strebl
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Maximilian Merz
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Robert Blamberg
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Fong-Chin Huang
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Kate McGraphery
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Thomas Hoffmann
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
| | - Wilfried Schwab
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, 85354, Freising, Germany
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Nawade B, Yahyaa M, Reuveny H, Shaltiel-Harpaz L, Eisenbach O, Faigenboim A, Bar-Yaakov I, Holland D, Ibdah M. Profiling of volatile terpenes from almond (Prunus dulcis) young fruits and characterization of seven terpene synthase genes. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 287:110187. [PMID: 31481200 DOI: 10.1016/j.plantsci.2019.110187] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2019] [Revised: 07/04/2019] [Accepted: 07/06/2019] [Indexed: 06/10/2023]
Abstract
Almond (Prunus dulcis) is an agricultural and economically important fruit tree from the Rosaceae family used in the food industry. The monoterpenes and sesquiterpenes perform important ecological functions such as insecticidal and antifeedant activities against various insects. The young fruits of the different almond varieties were found to produce considerable amounts of terpene volatiles, including linalool and geraniol. To identify terpene synthases (TPSs) involved in the production of these volatile terpenes, existing genome databases of the Rosaceae were screened for almond genes with significant sequence similarity to other plants TPSs. Bioinformatics analysis led to the identification of seven putative TPSs genes with complete open reading frames. We characterized the enzymes encoded by these seven complementary DNAs: the monoterpene synthases PdTPS1, PdTPS3, PdTPS5, and PdTPS6 belong to the TPS-b clade, which catalyzes the formation of β-phellandrene, geraniol, linalool, and farnesene, respectively. The sesquiterpene synthases PdTPS2 and PdTPS4, which belong to the TPS-a clade mainly catalyze the formation of bergamotene, while another sesquiterpene synthase, PdTPS7, from the TPS-g clade showed nerolidol synthase activity. The qRT-PCR analysis revealed that the various tissues of almond varieties showed differential transcription for all these PdTPSs genes.
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Affiliation(s)
- Bhagwat Nawade
- Newe Yaar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Mosaab Yahyaa
- Newe Yaar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Haim Reuveny
- Migal Galilee Research Institute, P.O. Box 831, Kiryat Shmona, 11016, Israel
| | - Liora Shaltiel-Harpaz
- Migal Galilee Research Institute, P.O. Box 831, Kiryat Shmona, 11016, Israel; Tel Hai college, Upper Galilee, 12210, Israel
| | - Ori Eisenbach
- Newe Yaar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Adi Faigenboim
- Institute of Plant Science, The Volcani Center, ARO, P.O. Box 6, Bet Dagan, 50250, Israel
| | - Irit Bar-Yaakov
- Newe Yaar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Doron Holland
- Newe Yaar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Mwafaq Ibdah
- Newe Yaar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel.
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30
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Yee DA, DeNicola AB, Billingsley JM, Creso JG, Subrahmanyam V, Tang Y. Engineered mitochondrial production of monoterpenes in Saccharomyces cerevisiae. Metab Eng 2019; 55:76-84. [PMID: 31226348 PMCID: PMC6717016 DOI: 10.1016/j.ymben.2019.06.004] [Citation(s) in RCA: 75] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 06/04/2019] [Accepted: 06/14/2019] [Indexed: 12/21/2022]
Abstract
Monoterpene indole alkaloids (MIAs) from plants encompass a broad class of structurally complex and medicinally valuable natural products. MIAs are biologically derived from the universal precursor strictosidine. Although the strictosidine biosynthetic pathway has been identified and reconstituted, extensive work is required to optimize production of strictosidine and its precursors in yeast. In this study, we engineered a fully integrated and plasmid-free yeast strain with enhanced production of the monoterpene precursor geraniol. The geraniol biosynthetic pathway was targeted to the mitochondria to protect the GPP pool from consumption by the cytosolic ergosterol pathway. The mitochondrial geraniol producer showed a 6-fold increase in geraniol production compared to cytosolic producing strains. We further engineered the monoterpene-producing strain to synthesize the next intermediates in the strictosidine pathway: 8-hydroxygeraniol and nepetalactol. Integration of geraniol hydroxylase (G8H) from Catharanthus roseus led to essentially quantitative conversion of geraniol to 8-hydroxygeraniol at a titer of 227 mg/L in a fed-batch fermentation. Further introduction of geraniol oxidoreductase (GOR) and iridoid synthase (ISY) from C. roseus and tuning of the relative expression levels resulted in the first de novo nepetalactol production. The strategies developed in this work can facilitate future strain engineering for yeast production of later intermediates in the strictosidine biosynthetic pathway.
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Affiliation(s)
- Danielle A Yee
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA, 90095, United States
| | - Anthony B DeNicola
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA, 90095, United States
| | - John M Billingsley
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA, 90095, United States
| | - Jenette G Creso
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA, 90095, United States
| | - Vidya Subrahmanyam
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, United States
| | - Yi Tang
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA, 90095, United States; Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, United States.
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31
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Dong L, Pollier J, Bassard JE, Ntallas G, Almeida A, Lazaridi E, Khakimov B, Arendt P, de Oliveira LS, Lota F, Goossens A, Michoux F, Bak S. Co-expression of squalene epoxidases with triterpene cyclases boosts production of triterpenoids in plants and yeast. Metab Eng 2018; 49:1-12. [PMID: 30016654 DOI: 10.1016/j.ymben.2018.07.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Revised: 07/03/2018] [Accepted: 07/05/2018] [Indexed: 01/11/2023]
Abstract
Triterpene cyclases catalyze the first committed step in triterpene biosynthesis, by forming mono- to pentacyclic backbone structures from oxygenated C30 isoprenoid precursors. Squalene epoxidase precedes this cyclization by providing the oxygenated and activated substrate for triterpene biosynthesis. Three squalene epoxidases from Cucurbita pepo (CpSEs) were isolated and shown to have evolved under purifying selection with signs of sites under positive selection in their N- and C-termini. They all localize to the Endoplasmic Reticulum (ER) and produce 2,3-oxidosqualene and 2,3:22,23-dioxidosqualene when expressed in a yeast erg1 (squalene epoxidase) erg7 (lanosterol synthase) double mutant. Co-expression of the CpSEs with four different triterpene cyclases, either transiently in Nicotiana benthamiana or constitutively in yeast, showed that CpSEs boost triterpene production. CpSE2 was the best performing in this regard, which could reflect either increased substrate production or superior channeling of the substrate to the triterpene cyclases. Fluorescence Lifetime Imaging Microscopy (FLIM) analysis with C. pepo cucurbitadienol synthase (CpCPQ) revealed a specific interaction with CpSE2 but not with the other CpSEs. When CpSE2 was transformed into C. pepo hairy root lines, cucurbitacin E production was increased two folds compared to empty vector control lines. This study provides new insight into the importance of SEs in triterpene biosynthesis, suggesting that they may facilitate substrate channeling, and demonstrates that SE overexpression is a new tool for increasing triterpene production in plants and yeast.
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Affiliation(s)
- Lemeng Dong
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Jacob Pollier
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 927, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 927, 9052 Ghent, Belgium
| | - Jean-Etienne Bassard
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Georgios Ntallas
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark; Alkion Biopharma SAS, 4 rue Pierre Fontaine, 91000 Evry, France
| | - Aldo Almeida
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Eleni Lazaridi
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Bekzod Khakimov
- Department of Food Science, University of Copenhagen, Rolighedsvej 16, DK-1958 Frederiksberg C, Denmark
| | - Philipp Arendt
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 927, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 927, 9052 Ghent, Belgium
| | - Louisi Souza de Oliveira
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 927, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 927, 9052 Ghent, Belgium
| | - Frédéric Lota
- Alkion Biopharma SAS, 4 rue Pierre Fontaine, 91000 Evry, France
| | - Alain Goossens
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 927, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 927, 9052 Ghent, Belgium
| | - Franck Michoux
- Alkion Biopharma SAS, 4 rue Pierre Fontaine, 91000 Evry, France
| | - Søren Bak
- Department of Plant and Environmental Science, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark.
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32
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Kutyna DR, Borneman AR. Heterologous Production of Flavour and Aroma Compounds in Saccharomyces cerevisiae. Genes (Basel) 2018; 9:E326. [PMID: 29958445 PMCID: PMC6071175 DOI: 10.3390/genes9070326] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Revised: 06/21/2018] [Accepted: 06/25/2018] [Indexed: 01/30/2023] Open
Abstract
Over the last two decades, rapid progress in the field of synthetic biology has opened several avenues for the heterologous de novo production of complex biological compounds, such as biofuels, pharmaceuticals, and food additives in microbial hosts. This minireview addresses the usage of the yeast Saccharomyces cerevisiae as a microbial cell factory for the production of flavour and aroma compounds, thereby providing a path towards a sustainable and efficient means of producing what are normally rare, and often expensive plant-derived chemicals.
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Affiliation(s)
- Dariusz R Kutyna
- The Australian Wine Research Institute, P.O. Box 197, Glen Osmond, SA 5064, Australia.
| | - Anthony R Borneman
- The Australian Wine Research Institute, P.O. Box 197, Glen Osmond, SA 5064, Australia.
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33
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Huang FC, Giri A, Daniilidis M, Sun G, Härtl K, Hoffmann T, Schwab W. Structural and Functional Analysis of UGT92G6 Suggests an Evolutionary Link Between Mono- and Disaccharide Glycoside-Forming Transferases. PLANT & CELL PHYSIOLOGY 2018; 59:857-870. [PMID: 29444327 DOI: 10.1093/pcp/pcy028] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Accepted: 01/30/2018] [Indexed: 05/05/2023]
Abstract
Glycosylation mediated by UDP-dependent glycosyltransferase (UGT) is one of the most common reactions for the biosynthesis of small molecule glycosides. As glycosides have various biological roles, we characterized UGT genes from grapevine (Vitis vinifera). In silico analysis of VvUGT genes that were highly expressed in leaves identified UGT92G6 which showed sequence similarity to both monosaccharide and disaccharide glucoside-forming transferases. The recombinant UGT92G6 glucosylated phenolics, among them caffeic acid, carvacrol, eugenol and raspberry ketone, and also accepted geranyl glucoside and citronellyl glucoside. Thus, UGT92G6 formed mono- and diglucosides in vitro from distinct compounds. The enzyme specificity constant Vmax/Km ratios indicated that UGT92G6 exhibited the highest specificity towards caffeic acid, producing almost equal amounts of the 3- and 4-O-glucoside. Transient overexpression of UGT92G6 in Nicotiana benthamiana leaves confirmed the production of caffeoyl glucoside; however, the level of geranyl diglucoside was not elevated upon overexpression of UGT92G6, even after co-expression of genes encoding geraniol synthase and geraniol UGT to provide sufficient precursor. Comparative sequence and 3-D structure analysis identified a sequence motif characteristic for monoglucoside-forming UGTs in UGT92G6, suggesting an evolutionary link between mono- and disaccharide glycoside UGTs. Thus, UGT92G6 functions as a mono- and diglucosyltransferase in vitro, but acts as a caffeoyl glucoside UGT in N. benthamiana.
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Affiliation(s)
- Fong-Chin Huang
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
| | - Ashok Giri
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
- Plant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, MS 411 008, India
| | - Melina Daniilidis
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
| | - Guangxin Sun
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
| | - Katja Härtl
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
| | - Thomas Hoffmann
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
| | - Wilfried Schwab
- Biotechnology of Natural Products, Technische Universität München, Liesel-Beckmann-Str. 1, D-85354 Freising, Germany
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34
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Yahyaa M, Ibdah M, Marzouk S, Ibdah M. Profiling of the Terpene Metabolome in Carrot Fruits of Wild ( Daucus carota L. ssp. carota) Accessions and Characterization of a Geraniol Synthase. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:2378-2386. [PMID: 27673494 DOI: 10.1021/acs.jafc.6b03596] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Fruits from wild carrot ( Daucus carota L. ssp. carota) have been used for medicinal purposes since ancient times. The oil of its seeds, with their abundant monoterpenes and sesquiterpenes, has drawn attention in recent years because of its potential pharmaceutical application. A combined chemical, biochemical, and molecular study was conducted to evaluate the differential accumulation of terpene volatiles in carrot fruits of wild accessions. This work reports a similarity-based cloning strategy identification and functional characterization of one carrot monoterpene terpene synthase, WtDcTPS1. Recombinant WtDcTPS1 protein produces mainly geraniol, the predominant monoterpene in carrot seeds of wild accession 23727. The results suggest a role for the WtDcTPS1 gene in the biosynthesis of carrot fruit aroma and flavor compounds.
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Affiliation(s)
- Mosaab Yahyaa
- Newe Yaar Research Center , Agriculture Research Organization , P.O. Box 1021, Ramat Yishay 30095 , Israel
| | - Muhammad Ibdah
- Sakhnin College Academic College for Teacher Education , Sakhnin , Israel
| | - Sally Marzouk
- Newe Yaar Research Center , Agriculture Research Organization , P.O. Box 1021, Ramat Yishay 30095 , Israel
| | - Mwafaq Ibdah
- Newe Yaar Research Center , Agriculture Research Organization , P.O. Box 1021, Ramat Yishay 30095 , Israel
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Dalla Costa L, Emanuelli F, Trenti M, Moreno-Sanz P, Lorenzi S, Coller E, Moser S, Slaghenaufi D, Cestaro A, Larcher R, Gribaudo I, Costantini L, Malnoy M, Grando MS. Induction of Terpene Biosynthesis in Berries of Microvine Transformed with VvDXS1 Alleles. FRONTIERS IN PLANT SCIENCE 2018; 8:2244. [PMID: 29387072 PMCID: PMC5776104 DOI: 10.3389/fpls.2017.02244] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Accepted: 12/20/2017] [Indexed: 05/30/2023]
Abstract
Terpenoids, especially monoterpenes, are major aroma-impact compounds in grape and wine. Previous studies highlighted a key regulatory role for grapevine 1-deoxy-D-xylulose 5-phosphate synthase 1 (VvDXS1), the first enzyme of the methylerythritol phosphate pathway for isoprenoid precursor biosynthesis. Here, the parallel analysis of VvDXS1 genotype and terpene concentration in a germplasm collection demonstrated that VvDXS1 sequence has a very high predictive value for the accumulation of monoterpenes and also has an influence on sesquiterpene levels. A metabolic engineering approach was applied by expressing distinct VvDXS1 alleles in the grapevine model system "microvine" and assessing the effects on downstream pathways at transcriptional and metabolic level in different organs and fruit developmental stages. The underlying goal was to investigate two potential perturbation mechanisms, the former based on a significant over-expression of the wild-type (neutral) VvDXS1 allele and the latter on the ex-novo expression of an enzyme with increased catalytic efficiency from the mutated (muscat) VvDXS1 allele. The integration of the two VvDXS1 alleles in distinct microvine lines was found to alter the expression of several terpenoid biosynthetic genes, as assayed through an ad hoc developed TaqMan array based on cDNA libraries of four aromatic cultivars. In particular, enhanced transcription of monoterpene, sesquiterpene and carotenoid pathway genes was observed. The accumulation of monoterpenes in ripe berries was higher in the transformed microvines compared to control plants. This effect is predominantly attributed to the improved activity of the VvDXS1 enzyme coded by the muscat allele, whereas the up-regulation of VvDXS1 plays a secondary role in the increase of monoterpenes.
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Affiliation(s)
- Lorenza Dalla Costa
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
| | - Francesco Emanuelli
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
| | - Massimiliano Trenti
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
| | - Paula Moreno-Sanz
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
- Center Agriculture Food Environment, University of Trento, San Michele all'Adige, Italy
| | - Silvia Lorenzi
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
| | - Emanuela Coller
- Research and Innovation Centre, Fondazione Edmund Mach, Computational Biology Platform, San Michele all'Adige, Italy
| | - Sergio Moser
- Technology Transfer Centre, Fondazione Edmund Mach, Experiment and Technological Services Department, San Michele all'Adige, Italy
| | - Davide Slaghenaufi
- Technology Transfer Centre, Fondazione Edmund Mach, Experiment and Technological Services Department, San Michele all'Adige, Italy
| | - Alessandro Cestaro
- Research and Innovation Centre, Fondazione Edmund Mach, Computational Biology Platform, San Michele all'Adige, Italy
| | - Roberto Larcher
- Technology Transfer Centre, Fondazione Edmund Mach, Experiment and Technological Services Department, San Michele all'Adige, Italy
| | - Ivana Gribaudo
- Institute for Sustainable Plant Protection—CNR, Grugliasco, Italy
| | - Laura Costantini
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
| | - Mickael Malnoy
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
| | - M. Stella Grando
- Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Biology of Fruit Crop Department, San Michele all'Adige, Italy
- Center Agriculture Food Environment, University of Trento, San Michele all'Adige, Italy
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36
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Saiman MZ, Miettinen K, Mustafa NR, Choi YH, Verpoorte R, Schulte AE. Metabolic alteration of Catharanthus roseus cell suspension cultures overexpressing geraniol synthase in the plastids or cytosol. PLANT CELL, TISSUE AND ORGAN CULTURE 2018; 134:41-53. [PMID: 31007320 PMCID: PMC6445406 DOI: 10.1007/s11240-018-1398-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 02/19/2018] [Indexed: 05/09/2023]
Abstract
Previous studies showed that geraniol could be an upstream limiting factor in the monoterpenoid pathway towards the production of terpenoid indole alkaloid (TIA) in Catharanthus roseus cells and hairy root cultures. This shortage in precursor availability could be due to (1) limited expression of the plastidial geraniol synthase resulted in a low activity of the enzyme to catalyze the conversion of geranyl diphosphate to geraniol; or (2) the limitation of geraniol transport from plastids to cytosol. Therefore, in this study, C. roseus's geraniol synthase (CrGES) gene was overexpressed in either plastids or cytosol of a non-TIA producing C. roseus cell line. The expression of CrGES in the plastids or cytosol was confirmed and the constitutive transformation lines were successfully established. A targeted metabolite analysis using HPLC shows that the transformed cell lines did not produce TIA or iridoid precursors unless elicited with jasmonic acid, as their parent cell line. This indicates a requirement for expression of additional, inducible pathway genes to reach production of TIA in this cell line. Interestingly, further analysis using NMR-based metabolomics reveals that the overexpression of CrGES impacts primary metabolism differently if expressed in the plastids or cytosol. The levels of valine, leucine, and some metabolites derived from the shikimate pathway, i.e. phenylalanine and tyrosine were significantly higher in the plastidial- but lower in the cytosolic-CrGES overexpressing cell lines. This result shows that overexpression of CrGES in the plastids or cytosol caused alteration of primary metabolism that associated to the plant cell growth and development. A comprehensive omics analysis is necessary to reveal the full effect of metabolic engineering.
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Affiliation(s)
- Mohd Zuwairi Saiman
- Institute of Biology, Leiden University, 2300 RA Leiden, The Netherlands
- Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
- Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Karel Miettinen
- Institute of Biology, Leiden University, 2300 RA Leiden, The Netherlands
| | - Natali Rianika Mustafa
- Institute of Biology, Leiden University, 2300 RA Leiden, The Netherlands
- ExPlant Technologies B.V., Galileiweg 8, 2333 BD Leiden, The Netherlands
| | - Young Hae Choi
- Institute of Biology, Leiden University, 2300 RA Leiden, The Netherlands
| | - Robert Verpoorte
- Institute of Biology, Leiden University, 2300 RA Leiden, The Netherlands
| | - Anna Elisabeth Schulte
- Institute of Biology, Leiden University, 2300 RA Leiden, The Netherlands
- ExPlant Technologies B.V., Galileiweg 8, 2333 BD Leiden, The Netherlands
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37
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Functional identification of a Lippia dulcis bornyl diphosphate synthase that contains a duplicated, inhibitory arginine-rich motif. Biochem Biophys Res Commun 2017; 490:963-968. [DOI: 10.1016/j.bbrc.2017.06.147] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Accepted: 06/24/2017] [Indexed: 01/22/2023]
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38
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Jiang GZ, Yao MD, Wang Y, Zhou L, Song TQ, Liu H, Xiao WH, Yuan YJ. Manipulation of GES and ERG20 for geraniol overproduction in Saccharomyces cerevisiae. Metab Eng 2017; 41:57-66. [DOI: 10.1016/j.ymben.2017.03.005] [Citation(s) in RCA: 82] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2016] [Revised: 02/24/2017] [Accepted: 03/27/2017] [Indexed: 10/19/2022]
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39
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Vasilev N, Boccard J, Lang G, Grömping U, Fischer R, Goepfert S, Rudaz S, Schillberg S. Structured plant metabolomics for the simultaneous exploration of multiple factors. Sci Rep 2016; 6:37390. [PMID: 27853298 PMCID: PMC5112604 DOI: 10.1038/srep37390] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Accepted: 10/18/2016] [Indexed: 12/13/2022] Open
Abstract
Multiple factors act simultaneously on plants to establish complex interaction networks involving nutrients, elicitors and metabolites. Metabolomics offers a better understanding of complex biological systems, but evaluating the simultaneous impact of different parameters on metabolic pathways that have many components is a challenging task. We therefore developed a novel approach that combines experimental design, untargeted metabolic profiling based on multiple chromatography systems and ionization modes, and multiblock data analysis, facilitating the systematic analysis of metabolic changes in plants caused by different factors acting at the same time. Using this method, target geraniol compounds produced in transgenic tobacco cell cultures were grouped into clusters based on their response to different factors. We hypothesized that our novel approach may provide more robust data for process optimization in plant cell cultures producing any target secondary metabolite, based on the simultaneous exploration of multiple factors rather than varying one factor each time. The suitability of our approach was verified by confirming several previously reported examples of elicitor-metabolite crosstalk. However, unravelling all factor-metabolite networks remains challenging because it requires the identification of all biochemically significant metabolites in the metabolomics dataset.
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Affiliation(s)
- Nikolay Vasilev
- Department of Plant Biotechnology, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Aachen 52074, Germany
| | - Julien Boccard
- School of Pharmaceutical Sciences, University of Lausanne and University of Geneva, 1211, Switzerland
| | - Gerhard Lang
- Philip Morris International R&D, Philip Morris Products S.A., Neuchâtel 2000, Switzerland
| | - Ulrike Grömping
- Department II–Mathematics, Physics and Chemistry, Beuth University of Applied Sciences, Berlin 13353, Germany
| | - Rainer Fischer
- Department of Plant Biotechnology, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Aachen 52074, Germany
- Institute for Molecular Biotechnology, RWTH Aachen University, Aachen 52074, Germany
| | - Simon Goepfert
- Philip Morris International R&D, Philip Morris Products S.A., Neuchâtel 2000, Switzerland
| | - Serge Rudaz
- School of Pharmaceutical Sciences, University of Lausanne and University of Geneva, 1211, Switzerland
| | - Stefan Schillberg
- Department of Plant Biotechnology, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Aachen 52074, Germany
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40
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Wang B, Kashkooli AB, Sallets A, Ting HM, de Ruijter NCA, Olofsson L, Brodelius P, Pottier M, Boutry M, Bouwmeester H, van der Krol AR. Transient production of artemisinin in Nicotiana benthamiana is boosted by a specific lipid transfer protein from A. annua. Metab Eng 2016; 38:159-169. [PMID: 27421621 DOI: 10.1016/j.ymben.2016.07.004] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Revised: 06/12/2016] [Accepted: 07/12/2016] [Indexed: 12/11/2022]
Abstract
Our lack of full understanding of transport and sequestration of the heterologous products currently limit metabolic engineering in plants for the production of high value terpenes. For instance, although all genes of the artemisinin/arteannuin B (AN/AB) biosynthesis pathway (AN-PW) from Artemisia annua have been identified, ectopic expression of these genes in Nicotiana benthamiana yielded mostly glycosylated pathway intermediates and only very little free (dihydro)artemisinic acid [(DH)AA]. Here we demonstrate that Lipid Transfer Protein 3 (AaLTP3) and the transporter Pleiotropic Drug Resistance 2 (AaPDR2) from A. annua enhance accumulation of (DH)AA in the apoplast of N. benthamiana leaves. Analysis of apoplast and cell content and apoplast exclusion assays show that AaLTP3 and AaPDR2 prevent reflux of (DH)AA from the apoplast back into the cells and enhances overall flux through the pathway. Moreover, AaLTP3 is stabilized in the presence of AN-PW activity and co-expression of AN-PW+AaLTP3+AaPDR2 genes yielded AN and AB in necrotic N. benthamiana leaves at 13 days post-agroinfiltration. This newly discovered function of LTPs opens up new possibilities for the engineering of biosynthesis pathways of high value terpenes in heterologous expression systems.
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Affiliation(s)
- Bo Wang
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Arman Beyraghdar Kashkooli
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Adrienne Sallets
- Institut des Sciences de la Vie, Université catholique de Louvain, Croix du Sud, 4-5, Box L7.07.14, 1348 Louvain-la-Neuve, Belgium
| | - Hieng-Ming Ting
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Norbert C A de Ruijter
- Laboratory of Cell Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Linda Olofsson
- Department of Chemistry and Biomedical Sciences, Linnaeus University, SE-38192 Kalmar, Sweden
| | - Peter Brodelius
- Department of Chemistry and Biomedical Sciences, Linnaeus University, SE-38192 Kalmar, Sweden
| | - Mathieu Pottier
- Institut des Sciences de la Vie, Université catholique de Louvain, Croix du Sud, 4-5, Box L7.07.14, 1348 Louvain-la-Neuve, Belgium
| | - Marc Boutry
- Institut des Sciences de la Vie, Université catholique de Louvain, Croix du Sud, 4-5, Box L7.07.14, 1348 Louvain-la-Neuve, Belgium
| | - Harro Bouwmeester
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Alexander R van der Krol
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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41
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Sun P, Schuurink RC, Caissard JC, Hugueney P, Baudino S. My Way: Noncanonical Biosynthesis Pathways for Plant Volatiles. TRENDS IN PLANT SCIENCE 2016; 21:884-894. [PMID: 27475252 DOI: 10.1016/j.tplants.2016.07.007] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2016] [Revised: 06/30/2016] [Accepted: 07/07/2016] [Indexed: 05/24/2023]
Abstract
Plant volatiles are crucial for various interactions with other organisms and their surrounding environment. A large number of these volatiles belong to the terpenoid and benzenoid/phenylpropanoid classes, which have long been considered to be exclusively synthesized from a few canonical pathways. However, several alternative pathways producing these plant volatiles have been discovered recently. This review summarizes the current knowledge about new pathways for these two major groups of plant volatiles, which open new perspectives for applications in metabolic engineering.
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Affiliation(s)
- Pulu Sun
- Université de Lyon, UJM-Saint-Étienne, CNRS, BVpam FRE 3727, F-42023 Saint-Étienne, France; Department of Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Robert C Schuurink
- Department of Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Jean-Claude Caissard
- Université de Lyon, UJM-Saint-Étienne, CNRS, BVpam FRE 3727, F-42023 Saint-Étienne, France
| | | | - Sylvie Baudino
- Université de Lyon, UJM-Saint-Étienne, CNRS, BVpam FRE 3727, F-42023 Saint-Étienne, France.
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42
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Chen F, Li W, Jiang L, Pu X, Yang Y, Zhang G, Luo Y. Functional characterization of a geraniol synthase-encoding gene from Camptotheca acuminata and its application in production of geraniol in Escherichia coli. ACTA ACUST UNITED AC 2016; 43:1281-92. [DOI: 10.1007/s10295-016-1802-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Accepted: 06/20/2016] [Indexed: 01/24/2023]
Abstract
Abstract
Geraniol synthase (GES) catalyzes the conversion of geranyl diphosphate (GPP) into geraniol, an acyclic monoterpene alcohol that has been widely used in many industries. Here we report the functional characterization of CaGES from Camptotheca acuminata, a camptothecin-producing plant, and its application in production of geraniol in Escherichia coli. The full-length cDNA of CaGES was obtained from overlap extension PCR amplification. The intact and N-terminus-truncated CaGESs were overexpressed in E. coli and purified to homogeneity. Recombinant CaGES showed the conversion activity from GPP to geraniol. To produce geraniol in E. coli using tCaGES, the biosynthetic precursor GPP should be supplied and transferred to the catalytic pocket of tCaGES. Thus, ispA(S80F), a mutant of farnesyl diphosphate (FPP) synthase, was prepared to produce GPP via the head-to-tail condensation of isoprenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). A slight increase of geraniol production was observed in the fermentation broth of the recombinant E. coli harboring tCaGES and ispA(S80F). To enhance the supply of IPP and DMAPP, the encoding genes involved in the whole mevalonic acid biosynthetic pathway were introduced to the E. coli harboring tCaGES and the ispA(S80F) and a significant increase of geraniol yield was observed. The geraniol production was enhanced to 5.85 ± 0.46 mg L−1 when another copy of ispA(S80F) was introduced to the above recombinant strain. The following optimization of medium composition, fermentation time, and addition of metal ions led to the geraniol production of 48.5 ± 0.9 mg L−1. The present study will be helpful to uncover the biosynthetic enigma of camptothecin and tCaGES will be an alternative to selectively produce geraniol in E. coli with other metabolic engineering approaches.
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Affiliation(s)
- Fei Chen
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
- grid.410726.6 0000000417978419 University of Chinese Academy of Sciences 100049 Beijing People’s Republic of China
| | - Wei Li
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
- grid.410726.6 0000000417978419 University of Chinese Academy of Sciences 100049 Beijing People’s Republic of China
| | - Liangzhen Jiang
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
| | - Xiang Pu
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
- grid.410726.6 0000000417978419 University of Chinese Academy of Sciences 100049 Beijing People’s Republic of China
| | - Yun Yang
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
- grid.410726.6 0000000417978419 University of Chinese Academy of Sciences 100049 Beijing People’s Republic of China
| | - Guolin Zhang
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
| | - Yinggang Luo
- grid.458441.8 0000000093395152 Center for Natural Products Research Chengdu Institute of Biology, Chinese Academy of Sciences 610041 Chengdu People’s Republic of China
- grid.422150.0 0000000110154378 State Key Laboratory of Bioorganic and Natural Products Chemistry Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences 200032 Shanghai People’s Republic of China
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43
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Arendt P, Pollier J, Callewaert N, Goossens A. Synthetic biology for production of natural and new-to-nature terpenoids in photosynthetic organisms. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2016; 87:16-37. [PMID: 26867713 DOI: 10.1111/tpj.13138] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2015] [Revised: 01/26/2016] [Accepted: 02/02/2016] [Indexed: 05/04/2023]
Abstract
With tens of thousands of characterized members, terpenoids constitute the largest class of natural compounds that are synthesized by all living organisms. Several terpenoids play primary roles in the maintenance of cell membrane fluidity, as pigments or as phytohormones, but most of them function as specialized metabolites that are involved in plant resistance to herbivores or plant-environment interactions. Terpenoids are an essential component of human nutrition, and many are economically important pharmaceuticals, aromatics and potential next-generation biofuels. Because of the often low abundance in their natural source, as well as the demand for novel terpenoid structures with new or improved bioactivities, terpenoid biosynthesis has become a prime target for metabolic engineering and synthetic biology projects. In this review we focus on the creation of new-to-nature or tailor-made plant-derived terpenoids in photosynthetic organisms, in particular by means of combinatorial biosynthesis and the activation of silent metabolism. We reflect on the characteristics of different potential photosynthetic host organisms and recent advances in synthetic biology and discuss their utility for the (heterologous) production of (novel) terpenoids.
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Affiliation(s)
- Philipp Arendt
- Department of Plant Systems Biology, VIB, B-9052, Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052, Gent, Belgium
- Laboratory for Protein Biochemistry and Biomolecular Engineering, Department of Biochemistry and Microbiology, Ghent University, B-9000, Ghent, Belgium
- VIB Medical Biotechnology Center, B-9000, Ghent, Belgium
| | - Jacob Pollier
- Department of Plant Systems Biology, VIB, B-9052, Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052, Gent, Belgium
| | - Nico Callewaert
- Laboratory for Protein Biochemistry and Biomolecular Engineering, Department of Biochemistry and Microbiology, Ghent University, B-9000, Ghent, Belgium
- VIB Medical Biotechnology Center, B-9000, Ghent, Belgium
| | - Alain Goossens
- Department of Plant Systems Biology, VIB, B-9052, Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052, Gent, Belgium
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44
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Improving monoterpene geraniol production through geranyl diphosphate synthesis regulation in Saccharomyces cerevisiae. Appl Microbiol Biotechnol 2016; 100:4561-71. [PMID: 26883346 DOI: 10.1007/s00253-016-7375-1] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Revised: 01/05/2016] [Accepted: 02/02/2016] [Indexed: 10/22/2022]
Abstract
Monoterpenes have wide applications in the food, cosmetics, and medicine industries and have recently received increased attention as advanced biofuels. However, compared with sesquiterpenes, monoterpene production is still lagging in Saccharomyces cerevisiae. In this study, geraniol, a valuable acyclic monoterpene alcohol, was synthesized in S. cerevisiae. We evaluated three geraniol synthases in S. cerevisiae, and the geraniol synthase Valeriana officinalis (tVoGES), which lacked a plastid-targeting peptide, yielded the highest geraniol production. To improve geraniol production, synthesis of the precursor geranyl diphosphate (GPP) was regulated by comparing three specific GPP synthase genes derived from different plants and the endogenous farnesyl diphosphate synthase gene variants ERG20 (G) (ERG20 (K197G) ) and ERG20 (WW) (ERG20 (F96W-N127W) ), and controlling endogenous ERG20 expression, coupled with increasing the expression of the mevalonate pathway by co-overexpressing IDI1, tHMG1, and UPC2-1. The results showed that overexpressing ERG20 (WW) and strengthening the mevalonate pathway significantly improved geraniol production, while expressing heterologous GPP synthase genes or down-regulating endogenous ERG20 expression did not show positive effect. In addition, we constructed an Erg20p(F96W-N127W)-tVoGES fusion protein, and geraniol production reached 66.2 mg/L after optimizing the amino acid linker and the order of the proteins. The best strain yielded 293 mg/L geraniol in a fed-batch cultivation, a sevenfold improvement over the highest titer previously reported in an engineered S. cerevisiae strain. Finally, we showed that the toxicity of geraniol limited its production. The platform developed here can be readily used to synthesize other monoterpenes.
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45
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Meena S, Kumar SR, Venkata Rao DK, Dwivedi V, Shilpashree HB, Rastogi S, Shasany AK, Nagegowda DA. De Novo Sequencing and Analysis of Lemongrass Transcriptome Provide First Insights into the Essential Oil Biosynthesis of Aromatic Grasses. FRONTIERS IN PLANT SCIENCE 2016; 7:1129. [PMID: 27516768 PMCID: PMC4963619 DOI: 10.3389/fpls.2016.01129] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 07/15/2016] [Indexed: 05/09/2023]
Abstract
Aromatic grasses of the genus Cymbopogon (Poaceae family) represent unique group of plants that produce diverse composition of monoterpene rich essential oils, which have great value in flavor, fragrance, cosmetic, and aromatherapy industries. Despite the commercial importance of these natural aromatic oils, their biosynthesis at the molecular level remains unexplored. As the first step toward understanding the essential oil biosynthesis, we performed de novo transcriptome assembly and analysis of C. flexuosus (lemongrass) by employing Illumina sequencing. Mining of transcriptome data and subsequent phylogenetic analysis led to identification of terpene synthases, pyrophosphatases, alcohol dehydrogenases, aldo-keto reductases, carotenoid cleavage dioxygenases, alcohol acetyltransferases, and aldehyde dehydrogenases, which are potentially involved in essential oil biosynthesis. Comparative essential oil profiling and mRNA expression analysis in three Cymbopogon species (C. flexuosus, aldehyde type; C. martinii, alcohol type; and C. winterianus, intermediate type) with varying essential oil composition indicated the involvement of identified candidate genes in the formation of alcohols, aldehydes, and acetates. Molecular modeling and docking further supported the role of identified protein sequences in aroma formation in Cymbopogon. Also, simple sequence repeats were found in the transcriptome with many linked to terpene pathway genes including the genes potentially involved in aroma biosynthesis. This work provides the first insights into the essential oil biosynthesis of aromatic grasses, and the identified candidate genes and markers can be a great resource for biotechnological and molecular breeding approaches to modulate the essential oil composition.
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Affiliation(s)
- Seema Meena
- Molecular Plant Biology and Biotechnology Lab, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic Plants Research CentreBangalore, India
| | - Sarma R. Kumar
- Molecular Plant Biology and Biotechnology Lab, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic Plants Research CentreBangalore, India
| | - D. K. Venkata Rao
- Molecular Plant Biology and Biotechnology Lab, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic Plants Research CentreBangalore, India
| | - Varun Dwivedi
- Molecular Plant Biology and Biotechnology Lab, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic Plants Research CentreBangalore, India
| | - H. B. Shilpashree
- Molecular Plant Biology and Biotechnology Lab, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic Plants Research CentreBangalore, India
| | - Shubhra Rastogi
- Biotechnology Division, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic PlantsLucknow, India
| | - Ajit K. Shasany
- Biotechnology Division, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic PlantsLucknow, India
| | - Dinesh A. Nagegowda
- Molecular Plant Biology and Biotechnology Lab, Council of Scientific and Industrial Research – Central Institute of Medicinal and Aromatic Plants Research CentreBangalore, India
- *Correspondence: Dinesh A. Nagegowda,
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Ilc T, Parage C, Boachon B, Navrot N, Werck-Reichhart D. Monoterpenol Oxidative Metabolism: Role in Plant Adaptation and Potential Applications. FRONTIERS IN PLANT SCIENCE 2016; 7:509. [PMID: 27200002 PMCID: PMC4844611 DOI: 10.3389/fpls.2016.00509] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2016] [Accepted: 03/31/2016] [Indexed: 05/20/2023]
Abstract
Plants use monoterpenols as precursors for the production of functionally and structurally diverse molecules, which are key players in interactions with other organisms such as pollinators, flower visitors, herbivores, fungal, or microbial pathogens. For humans, many of these monoterpenol derivatives are economically important because of their pharmaceutical, nutraceutical, flavor, or fragrance applications. The biosynthesis of these derivatives is to a large extent catalyzed by enzymes from the cytochrome P450 superfamily. Here we review the knowledge on monoterpenol oxidative metabolism in plants with special focus on recent elucidations of oxidation steps leading to diverse linalool and geraniol derivatives. We evaluate the common features between oxidation pathways of these two monoterpenols, such as involvement of the CYP76 family, and highlight the differences. Finally, we discuss the missing steps and other open questions in the biosynthesis of oxygenated monoterpenol derivatives.
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Dong L, Jongedijk E, Bouwmeester H, Van Der Krol A. Monoterpene biosynthesis potential of plant subcellular compartments. THE NEW PHYTOLOGIST 2016; 209:679-90. [PMID: 26356766 DOI: 10.1111/nph.13629] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2014] [Accepted: 08/03/2015] [Indexed: 05/03/2023]
Abstract
Subcellular monoterpene biosynthesis capacity based on local geranyl diphosphate (GDP) availability or locally boosted GDP production was determined for plastids, cytosol and mitochondria. A geraniol synthase (GES) was targeted to plastids, cytosol, or mitochondria. Transient expression in Nicotiana benthamiana indicated local GDP availability for each compartment but resulted in different product levels. A GDP synthase from Picea abies (PaGDPS1) was shown to boost GDP production. PaGDPS1 was also targeted to plastids, cytosol or mitochondria and PaGDPS1 and GES were coexpressed in all possible combinations. Geraniol and geraniol-derived products were analyzed by GC-MS and LC-MS, respectively. GES product levels were highest for plastid-targeted GES, followed by mitochondrial- and then cytosolic-targeted GES. For each compartment local boosting of GDP biosynthesis increased GES product levels. GDP exchange between compartments is not equal: while no GDP is exchanged from the cytosol to the plastids, 100% of GDP in mitochondria can be exchanged to plastids, while only 7% of GDP from plastids is available for mitochondria. This suggests a direct exchange mechanism for GDP between plastids and mitochondria. Cytosolic PaGDPS1 competes with plastidial GES activity, suggesting an effective drain of isopentenyl diphosphate from the plastids to the cytosol.
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Affiliation(s)
- Lemeng Dong
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands
| | - Esmer Jongedijk
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands
| | - Harro Bouwmeester
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands
| | - Alexander Van Der Krol
- Laboratory of Plant Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands
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Kumar K, Kumar SR, Dwivedi V, Rai A, Shukla AK, Shanker K, Nagegowda DA. Precursor feeding studies and molecular characterization of geraniol synthase establish the limiting role of geraniol in monoterpene indole alkaloid biosynthesis in Catharanthus roseus leaves. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 239:56-66. [PMID: 26398791 DOI: 10.1016/j.plantsci.2015.07.007] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Revised: 07/01/2015] [Accepted: 07/10/2015] [Indexed: 05/23/2023]
Abstract
The monoterpene indole alkaloids (MIAs) are generally derived from strictosidine, which is formed by condensation of the terpene moiety secologanin and the indole moiety tryptamine. There are conflicting reports on the limitation of either terpene or indole moiety in the production of MIAs in Catharanthus roseus cell cultures. Formation of geraniol by geraniol synthase (GES) is the first step in secologanin biosynthesis. In this study, feeding of C. roseus leaves with geraniol, but not tryptophan (precursor for tryptamine), increased the accumulation of the MIAs catharanthine and vindoline, indicating the limitation of geraniol in MIA biosynthesis. This was further validated by molecular and in planta characterization of C. roseus GES (CrGES). CrGES transcripts exhibited leaf and shoot specific expression and were induced by methyl jasmonate. Virus-induced gene silencing (VIGS) of CrGES significantly reduced the MIA content, which was restored to near-WT levels upon geraniol feeding. Moreover, over-expression of CrGES in C. roseus leaves increased MIA content. Further, CrGES exhibited correlation with MIA levels in leaves of different C. roseus cultivars and has significantly lower expression relative to other pathway genes. These results demonstrated that the transcriptional regulation of CrGES and thus, the in planta geraniol availability plays crucial role in MIA biosynthesis.
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Affiliation(s)
- Krishna Kumar
- CSIR-Central Institute of Medicinal and Aromatic Plants Research Centre, Bengaluru 560065, India; Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India
| | - Sarma Rajeev Kumar
- CSIR-Central Institute of Medicinal and Aromatic Plants Research Centre, Bengaluru 560065, India; Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India
| | - Varun Dwivedi
- CSIR-Central Institute of Medicinal and Aromatic Plants Research Centre, Bengaluru 560065, India; Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India
| | - Avanish Rai
- CSIR-Central Institute of Medicinal and Aromatic Plants Research Centre, Bengaluru 560065, India; Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India
| | - Ashutosh K Shukla
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India
| | - Karuna Shanker
- Analytical Chemistry Department, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India
| | - Dinesh A Nagegowda
- CSIR-Central Institute of Medicinal and Aromatic Plants Research Centre, Bengaluru 560065, India; Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, P.O. CIMAP, Lucknow 226015, India.
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Rehman R, Hanif MA, Mushtaq Z, Al-Sadi AM. Biosynthesis of essential oils in aromatic plants: A review. FOOD REVIEWS INTERNATIONAL 2015. [DOI: 10.1080/87559129.2015.1057841] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Nieuwenhuizen NJ, Chen X, Wang MY, Matich AJ, Perez RL, Allan AC, Green SA, Atkinson RG. Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors. PLANT PHYSIOLOGY 2015; 167:1243-58. [PMID: 25649633 PMCID: PMC4378164 DOI: 10.1104/pp.114.254367] [Citation(s) in RCA: 117] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Accepted: 01/18/2015] [Indexed: 05/02/2023]
Abstract
Two kiwifruit (Actinidia) species with contrasting terpene profiles were compared to understand the regulation of fruit monoterpene production. High rates of terpinolene production in ripe Actinidia arguta fruit were correlated with increasing gene and protein expression of A. arguta terpene synthase1 (AaTPS1) and correlated with an increase in transcript levels of the 2-C-methyl-D-erythritol 4-phosphate pathway enzyme 1-deoxy-D-xylulose-5-phosphate synthase (DXS). Actinidia chinensis terpene synthase1 (AcTPS1) was identified as part of an array of eight tandemly duplicated genes, and AcTPS1 expression and terpene production were observed only at low levels in developing fruit. Transient overexpression of DXS in Nicotiana benthamiana leaves elevated monoterpene synthesis by AaTPS1 more than 100-fold, indicating that DXS is likely to be the key step in regulating 2-C-methyl-D-erythritol 4-phosphate substrate flux in kiwifruit. Comparative promoter analysis identified potential NAC (for no apical meristem [NAM], Arabidopsis transcription activation factor [ATAF], and cup-shaped cotyledon [CUC])-domain transcription factor) and ETHYLENE-INSENSITIVE3-like transcription factor (TF) binding sites in the AaTPS1 promoter, and cloned members of both TF classes were able to activate the AaTPS1 promoter in transient assays. Electrophoretic mobility shift assays showed that AaNAC2, AaNAC3, and AaNAC4 bind a 28-bp fragment of the proximal NAC binding site in the AaTPS1 promoter but not the A. chinensis AcTPS1 promoter, where the NAC binding site was mutated. Activation could be restored by reintroducing multiple repeats of the 12-bp NAC core-binding motif. The absence of NAC transcriptional activation in ripe A. chinensis fruit can account for the low accumulation of AcTPS1 transcript, protein, and monoterpene volatiles in this species. These results indicate the importance of NAC TFs in controlling monoterpene production and other traits in ripening fruits.
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Affiliation(s)
- Niels J Nieuwenhuizen
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Xiuyin Chen
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Mindy Y Wang
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Adam J Matich
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Ramon Lopez Perez
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Andrew C Allan
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Sol A Green
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
| | - Ross G Atkinson
- The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand (N.J.N., X.C., M.Y.W., R.L.P., A.C.A., S.A.G., R.G.A.);School of Biological Sciences, University of Auckland, Auckland 1142, New Zealand (N.J.N., A.C.A.); andThe New Zealand Institute for Plant and Food Research Limited, Palmerston North 4442, New Zealand (A.J.M.)
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