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Rampinini A, Balboni I, Kepinska O, Berthele R, Golestani N. NEBULA101: an open dataset for the study of language aptitude in behaviour, brain structure and function. Sci Data 2025; 12:19. [PMID: 39762267 PMCID: PMC11704325 DOI: 10.1038/s41597-024-04357-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 12/20/2024] [Indexed: 01/11/2025] Open
Abstract
This paper introduces the "NEBULA101 - Neuro-behavioural Understanding of Language Aptitude" dataset, which comprises behavioural and brain imaging data from 101 healthy adults to examine individual differences in language and cognition. Human language, a multifaceted behaviour, varies significantly among individuals, at different processing levels. Recent advances in cognitive science have embraced an integrated approach, combining behavioural and brain studies to explore these differences comprehensively. The NEBULA101 dataset offers brain structural, diffusion-weighted, task-based and resting-state MRI data, alongside extensive linguistic and non-linguistic behavioural measures to explore the complex interaction of language and cognition in a highly multilingual sample. By sharing this multimodal dataset, we hope to promote research on the neuroscience of language, cognition and multilingualism, enabling the field to deepen its understanding of the multivariate panorama of individual differences and ultimately contributing to open science.
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Affiliation(s)
- Alessandra Rampinini
- Brain and Language Lab, Department of Psychology, Faculty of Psychology and Education Science, University of Geneva, Geneva, Switzerland.
- National Centre of Competence in Research Evolving Language, Swiss National Science Foundation, Switzerland.
| | - Irene Balboni
- Brain and Language Lab, Department of Psychology, Faculty of Psychology and Education Science, University of Geneva, Geneva, Switzerland
- National Centre of Competence in Research Evolving Language, Swiss National Science Foundation, Switzerland
- Brain and Language Lab, Vienna Cognitive Science Hub, University of Vienna, Vienna, Austria
- Department of Behavioural and Cognitive Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
- Institute of Multilingualism, University of Fribourg, Fribourg, Switzerland
| | - Olga Kepinska
- Brain and Language Lab, Vienna Cognitive Science Hub, University of Vienna, Vienna, Austria
- Department of Behavioural and Cognitive Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
| | - Raphael Berthele
- National Centre of Competence in Research Evolving Language, Swiss National Science Foundation, Switzerland
- Institute of Multilingualism, University of Fribourg, Fribourg, Switzerland
| | - Narly Golestani
- Brain and Language Lab, Department of Psychology, Faculty of Psychology and Education Science, University of Geneva, Geneva, Switzerland
- National Centre of Competence in Research Evolving Language, Swiss National Science Foundation, Switzerland
- Brain and Language Lab, Vienna Cognitive Science Hub, University of Vienna, Vienna, Austria
- Department of Behavioural and Cognitive Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
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2
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Dosenbach NUF, Raichle ME, Gordon EM. The brain's action-mode network. Nat Rev Neurosci 2025:10.1038/s41583-024-00895-x. [PMID: 39743556 DOI: 10.1038/s41583-024-00895-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/10/2024] [Indexed: 01/04/2025]
Abstract
The brain is always intrinsically active, using energy at high rates while cycling through global functional modes. Awake brain modes are tied to corresponding behavioural states. During goal-directed behaviour, the brain enters an action-mode of function. In the action-mode, arousal is heightened, attention is focused externally and action plans are created, converted to goal-directed movements and continuously updated on the basis of relevant feedback, such as pain. Here, we synthesize classical and recent human and animal evidence that the action-mode of the brain is created and maintained by an action-mode network (AMN), which we had previously identified and named the cingulo-opercular network on the basis of its anatomy. We discuss how rather than continuing to name this network anatomically, annotating it functionally as controlling the action-mode of the brain increases its distinctiveness from spatially adjacent networks and accounts for the large variety of the associated functions of an AMN, such as increasing arousal, processing of instructional cues, task general initiation transients, sustained goal maintenance, action planning, sympathetic drive for controlling physiology and internal organs (connectivity to adrenal medulla), and action-relevant bottom-up signals such as physical pain, errors and viscerosensation. In the functional mode continuum of the awake brain, the AMN-generated action-mode sits opposite the default-mode for self-referential, emotional and memory processing, with the default-mode network and AMN counterbalancing each other as yin and yang.
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Affiliation(s)
- Nico U F Dosenbach
- Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA.
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
- Department of Psychological & Brain Sciences, Washington University, St. Louis, MO, USA.
- Department of Biomedical Engineering, Washington University, St. Louis, MO, USA.
- Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, USA.
| | - Marcus E Raichle
- Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO, USA
- Department of Psychological & Brain Sciences, Washington University, St. Louis, MO, USA
- Department of Biomedical Engineering, Washington University, St. Louis, MO, USA
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO, USA
| | - Evan M Gordon
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO, USA
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Li J, He J, Ren H, Li Z, Ma X, Yuan L, Ouyang L, Li C, Chen X, He Y, Tang J. Multilayer network instability underlying persistent auditory verbal hallucinations in schizophrenia. Psychiatry Res 2024; 344:116351. [PMID: 39787739 DOI: 10.1016/j.psychres.2024.116351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 12/15/2024] [Accepted: 12/30/2024] [Indexed: 01/12/2025]
Abstract
BACKGROUND Auditory verbal hallucinations (AVHs) in schizophrenia (SCZ) are linked to brain network abnormalities. Resting-state fMRI studies often assume stable networks during scans, yet dynamic changes related to AVHs are not well understood. METHODS We analyzed resting-state fMRI data from 60 SCZ patients with persistent AVHs (p-AVHs), 39 SCZ patients without AVHs (n-AVHs), and 59 healthy controls (HCs), matched for demographics. Using graph theory, we constructed a time-varying modular structure of brain networks, focusing on multilayer modularity. Network switching rates at global, subnetwork, and nodal levels were compared across groups and related to AVH severity. RESULTS SCZ groups had higher switching rates in the subcortical network compared to HCs. Increased switching was found in two thalamic nodes for both patient groups. The p-AVH group showed lower switching rates in the default mode network (DMN) and two superior frontal gyrus nodes compared to HC and n-AVH groups. DMN switching rates negatively correlated with AVH severity in the p-AVH group. CONCLUSIONS Dynamic changes in brain networks, especially lower DMN and frontal region switching rates, may contribute to the development and persistence of AVHs in SCZ.
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Affiliation(s)
- Jinguang Li
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China; Department of Psychiatry, Wuhan Mental Health Center, Wuhan, PR China
| | - Jingqi He
- Department of Psychiatry, Sir Run-Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, PR China
| | - Honghong Ren
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China; Shandong Provincial Hospital Affiliated to Shandong First Medical University, Shandong, PR China
| | - Zongchang Li
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China
| | - Xiaoqian Ma
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China
| | - Liu Yuan
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China
| | - Lijun Ouyang
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China
| | - Chunwang Li
- Department of Radiology, Hunan Children's Hospital, Changsha, Hunan, PR China
| | - Xiaogang Chen
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China
| | - Ying He
- Department of Psychiatry, National Clinical Research Center for Mental Disorders, and National Center for Mental Disorders, The Second Xiangya Hospital of Central South University, Changsha, Hunan, PR China.
| | - Jinsong Tang
- Department of Psychiatry, Sir Run-Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, PR China.
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Hosseini E, Casto C, Zaslavsky N, Conwell C, Richardson M, Fedorenko E. Universality of representation in biological and artificial neural networks. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.12.26.629294. [PMID: 39764030 PMCID: PMC11703180 DOI: 10.1101/2024.12.26.629294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/12/2025]
Abstract
Many artificial neural networks (ANNs) trained with ecologically plausible objectives on naturalistic data align with behavior and neural representations in biological systems. Here, we show that this alignment is a consequence of convergence onto the same representations by high-performing ANNs and by brains. We developed a method to identify stimuli that systematically vary the degree of inter-model representation agreement. Across language and vision, we then showed that stimuli from high- and low-agreement sets predictably modulated model-to-brain alignment. We also examined which stimulus features distinguish high- from low-agreement sentences and images. Our results establish representation universality as a core component in the model-to-brain alignment and provide a new approach for using ANNs to uncover the structure of biological representations and computations.
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Affiliation(s)
- Eghbal Hosseini
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Colton Casto
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Program in Speech and Hearing Bioscience and Technology (SHBT), Harvard University, Boston, MA, USA
- Kempner Institute for the Study of Natural and Artificial Intelligence, Harvard University, Allston, MA, USA
| | - Noga Zaslavsky
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Psychology, New York University, New York, NY, USA
| | - Colin Conwell
- Department of Psychology, Harvard University, Cambridge, MA, USA
| | - Mark Richardson
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- Program in Speech and Hearing Bioscience and Technology (SHBT), Harvard University, Boston, MA, USA
- Department of Neurosurgery, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Program in Speech and Hearing Bioscience and Technology (SHBT), Harvard University, Boston, MA, USA
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Malik-Moraleda S, Taliaferro M, Shannon S, Jhingan N, Swords S, Peterson DJ, Frommer P, Okrand M, Sams J, Cardwell R, Freeman C, Fedorenko E. Constructed languages are processed by the same brain mechanisms as natural languages. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.07.28.550667. [PMID: 37546901 PMCID: PMC10402139 DOI: 10.1101/2023.07.28.550667] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Abstract
What constitutes a language? Natural languages share features with other domains: from math, to music, to gesture. However, the brain mechanisms that process linguistic input are highly specialized, showing little response to diverse non-linguistic tasks. Here, we examine constructed languages (conlangs) to ask whether they draw on the same neural mechanisms as natural languages, or whether they instead pattern with domains like math and programming languages. Using individual-subject fMRI analyses, we show that understanding conlangs recruits the same brain areas as natural language comprehension. This result holds for Esperanto (n=19 speakers) and four fictional conlangs (Klingon (n=10), Na'vi (n=9), High Valyrian (n=3), and Dothraki (n=3)). These findings suggest that conlangs and natural languages share critical features that allow them to draw on the same representations and computations, implemented in the left-lateralized network of brain areas. The features of conlangs that differentiate them from natural languages-including recent creation by a single individual, often for an esoteric purpose, the small number of speakers, and the fact that these languages are typically learned in adulthood-appear to not be consequential for the reliance on the same cognitive and neural mechanisms. We argue that the critical shared feature of conlangs and natural languages is that they are symbolic systems capable of expressing an open-ended range of meanings about our outer and inner worlds.
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Affiliation(s)
- Saima Malik-Moraleda
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Boston, MA 02114
| | - Maya Taliaferro
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
| | - Steve Shannon
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
| | - Niharika Jhingan
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
| | - Sara Swords
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
| | | | - Paul Frommer
- Marshall School of Business, University of Southern California, Los Angeles, CA 90089
| | | | | | | | | | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Boston, MA 02114
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Quiñones I, Gisbert-Muñoz S, Amoruso L, Manso-Ortega L, Mori U, Bermudez G, Robles SG, Pomposo I, Carreiras M. Unveiling the neuroplastic capacity of the bilingual brain: insights from healthy and pathological individuals. Brain Struct Funct 2024; 229:2187-2205. [PMID: 39289268 PMCID: PMC11612012 DOI: 10.1007/s00429-024-02846-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 07/29/2024] [Indexed: 09/19/2024]
Abstract
Research on the neural imprint of dual-language experience, crucial for understanding how the brain processes dominant and non-dominant languages, remains inconclusive. Conflicting evidence suggests either similarity or distinction in neural processing, with implications for bilingual patients with brain tumors. Preserving dual-language functions after surgery requires considering pre-diagnosis neuroplastic changes. Here, we combine univariate and multivariate fMRI methodologies to test a group of healthy Spanish-Basque bilinguals and a group of bilingual patients with gliomas affecting the language-dominant hemisphere while they overtly produced sentences in either their dominant or non-dominant language. Findings from healthy participants revealed the presence of a shared neural system for both languages, while also identifying regions with distinct language-dependent activation and lateralization patterns. Specifically, while the dominant language engaged a more left-lateralized network, speech production in the non-dominant language relied on the recruitment of a bilateral basal ganglia-thalamo-cortical circuit. Notably, based on language lateralization patterns, we were able to robustly decode (AUC: 0.80 ± 0.18) the language being used. Conversely, bilingual patients exhibited bilateral activation patterns for both languages. For the dominant language, regions such as the cerebellum, thalamus, and caudate acted in concert with the sparsely activated language-specific nodes. In the case of the non-dominant language, the recruitment of the default mode network was notably prominent. These results demonstrate the compensatory engagement of non-language-specific networks in the preservation of bilingual speech production, even in the face of pathological conditions. Overall, our findings underscore the pervasive impact of dual-language experience on brain functional (re)organization, both in health and disease.
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Affiliation(s)
- Ileana Quiñones
- Biogipuzkoa Health Research Institute, Basque Foundation for Science, San Sebastian, 20009, Spain.
- Ikerbasque, Basque Foundation for Science, Bilbao, 48009, Spain.
| | - Sandra Gisbert-Muñoz
- ESIC Business and Marketing School, Valencia, Spain.
- University of the Basque Country, UPV/EHU, Bilbao, 48940, Spain.
| | - Lucía Amoruso
- Ikerbasque, Basque Foundation for Science, Bilbao, 48009, Spain.
- BCBL, Basque Center on Cognition, Brain, and Language, San Sebastian, 20009, Spain.
| | - Lucia Manso-Ortega
- University of the Basque Country, UPV/EHU, Bilbao, 48940, Spain
- BCBL, Basque Center on Cognition, Brain, and Language, San Sebastian, 20009, Spain
| | - Usue Mori
- University of the Basque Country, UPV/EHU, Bilbao, 48940, Spain
| | - Garazi Bermudez
- Biobizkaia Health Research Institute, Bilbao, 48015, Spain
- Department of Neurosurgery, Hospital Cruces, Bilbao, 48903, Spain
| | - Santiago Gil Robles
- Biobizkaia Health Research Institute, Bilbao, 48015, Spain
- Department of Neurosurgery, Hospital Quirón salud, Madrid, 28223, Spain
| | - Iñigo Pomposo
- Biobizkaia Health Research Institute, Bilbao, 48015, Spain
- Department of Neurosurgery, Hospital Cruces, Bilbao, 48903, Spain
| | - Manuel Carreiras
- Ikerbasque, Basque Foundation for Science, Bilbao, 48009, Spain
- University of the Basque Country, UPV/EHU, Bilbao, 48940, Spain
- BCBL, Basque Center on Cognition, Brain, and Language, San Sebastian, 20009, Spain
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Li J, Tuckute G, Fedorenko E, Edlow BL, Dalca AV, Fischl B. JOSA: Joint surface-based registration and atlas construction of brain geometry and function. Med Image Anal 2024; 98:103292. [PMID: 39173411 DOI: 10.1016/j.media.2024.103292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 06/21/2024] [Accepted: 07/30/2024] [Indexed: 08/24/2024]
Abstract
Surface-based cortical registration is an important topic in medical image analysis and facilitates many downstream applications. Current approaches for cortical registration are mainly driven by geometric features, such as sulcal depth and curvature, and often assume that registration of folding patterns leads to alignment of brain function. However, functional variability of anatomically corresponding areas across subjects has been widely reported, particularly in higher-order cognitive areas. In this work, we present JOSA, a novel cortical registration framework that jointly models the mismatch between geometry and function while simultaneously learning an unbiased population-specific atlas. Using a semi-supervised training strategy, JOSA achieves superior registration performance in both geometry and function to the state-of-the-art methods but without requiring functional data at inference. This learning framework can be extended to any auxiliary data to guide spherical registration that is available during training but is difficult or impossible to obtain during inference, such as parcellations, architectonic identity, transcriptomic information, and molecular profiles. By recognizing the mismatch between geometry and function, JOSA provides new insights into the future development of registration methods using joint analysis of brain structure and function.
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Affiliation(s)
- Jian Li
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, United States of America; Center for Neurotechnology and Neurorecovery, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, United States of America.
| | - Greta Tuckute
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, United States of America; McGovern Institute for Brain Research, Massachusetts Institute of Technology, United States of America
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, United States of America; McGovern Institute for Brain Research, Massachusetts Institute of Technology, United States of America; Program in Speech Hearing Bioscience and Technology, Harvard University, United States of America
| | - Brian L Edlow
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, United States of America; Center for Neurotechnology and Neurorecovery, Department of Neurology, Massachusetts General Hospital and Harvard Medical School, United States of America
| | - Adrian V Dalca
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, United States of America; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, United States of America
| | - Bruce Fischl
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School, United States of America; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, United States of America
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Teo JM, Kumar VA, Lee J, Eldaya RW, Hou P, Jen ML, Noll KR, Wei P, Ferguson SD, Prabhu SS, Wintermark M, Liu HL. Probabilistic Presurgical Language fMRI Atlas of Patients with Brain Tumors. AJNR Am J Neuroradiol 2024; 45:1798-1804. [PMID: 38889968 PMCID: PMC11543082 DOI: 10.3174/ajnr.a8383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 06/09/2024] [Indexed: 06/20/2024]
Abstract
BACKGROUND AND PURPOSE Patients with brain tumors have high intersubject variation in putative language regions, which may limit the utility of straightforward application of healthy subject brain atlases in clinical scenarios. The purpose of this study was to develop a probabilistic functional brain atlas that consolidates language functional activations of sentence completion and Silent Word Generation language paradigms using a large sample of patients with brain tumors. MATERIALS AND METHODS The atlas was developed using retrospectively collected fMRI data from patients with brain tumors who underwent their first standard-of-care presurgical language fMRI scan at our institution between July 18, 2015, and May 13, 2022. Three hundred seventeen patients (861 fMRI scans) were used to develop the language functional atlas. An independent presurgical language fMRI data set of 39 patients with brain tumors from a previous study was used to evaluate our atlas. Family-wise error-corrected binary functional activation maps from sentence completion, letter fluency, and category fluency presurgical fMRI were used to create probability overlap maps and pooled probabilistic overlap maps in Montreal Neurological Institute standard space. The Wilcoxon signed-rank test was used to determine a significant difference in the maximum Dice coefficient for our atlas compared with a meta-analysis-based template with respect to expert-delineated primary language area activations. RESULTS Probabilities of activating the left anterior primary language area and left posterior primary language area in the temporal lobe were 87.9% and 91.5%, respectively, for sentence completion, 88.5% and 74.2%, respectively, for letter fluency, and 83.6% and 67.6%, respectively, for category fluency. Maximum Dice coefficients for templates derived from our language atlas were significantly higher than the meta-analysis-based template in the left anterior primary language area (0.351 and 0.326, respectively, P < .05) and the left posterior primary language area in the temporal lobe (0.274 and 0.244, respectively, P < .005). CONCLUSIONS Brain tumor patient- and paradigm-specific probabilistic language atlases were developed. These atlases had superior spatial agreement with fMRI activations in individual patients compared with the meta-analysis-based template.
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Affiliation(s)
- Jian Ming Teo
- From the Department of Imaging Physics (J.M.T., P.H., M.-L.J., H.-L.L.), The University of Texas MD Anderson Cancer Center, Houston, Texas
- Medical Physics Graduate Program (J.M.T.), The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, Texas
| | - Vinodh A Kumar
- Department of Diagnostic Radiology (V.A.K., J.L., R.W.E., M.W.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Jina Lee
- Department of Diagnostic Radiology (V.A.K., J.L., R.W.E., M.W.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Rami W Eldaya
- Department of Diagnostic Radiology (V.A.K., J.L., R.W.E., M.W.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Ping Hou
- From the Department of Imaging Physics (J.M.T., P.H., M.-L.J., H.-L.L.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Mu-Lan Jen
- From the Department of Imaging Physics (J.M.T., P.H., M.-L.J., H.-L.L.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Kyle R Noll
- Department of Neuro-Oncology (K.R.N.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Peng Wei
- Department of Biostatistics (P.W.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Sherise D Ferguson
- Department of Neurosurgery (S.D.F., S.S.P.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Sujit S Prabhu
- Department of Neurosurgery (S.D.F., S.S.P.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Max Wintermark
- Department of Diagnostic Radiology (V.A.K., J.L., R.W.E., M.W.), The University of Texas MD Anderson Cancer Center, Houston, Texas
| | - Ho-Ling Liu
- From the Department of Imaging Physics (J.M.T., P.H., M.-L.J., H.-L.L.), The University of Texas MD Anderson Cancer Center, Houston, Texas
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9
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Okuno T, Hata J, Kawai C, Okano H, Woodward A. A Novel Directed Seed-Based Connectivity Analysis Toolbox Applied to Human and Marmoset Resting-State FMRI. J Neurosci 2024; 44:e0389242024. [PMID: 39299799 PMCID: PMC11551911 DOI: 10.1523/jneurosci.0389-24.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 09/09/2024] [Accepted: 09/11/2024] [Indexed: 09/22/2024] Open
Abstract
Estimating the direction of functional connectivity (FC) can help further elucidate complex brain function. However, the estimation of directed FC at the voxel level in fMRI data, and evaluating its performance, has yet to be done. We therefore developed a novel directed seed-based connectivity analysis (SCA) method based on normalized pairwise Granger causality that provides greater detail and accuracy over ROI-based methods. We evaluated its performance against 145 cortical retrograde tracer injections in male and female marmosets that were used as ground truth cellular connectivity on a voxel-by-voxel basis. The receiver operating characteristic (ROC) curve was calculated for each injection, and we achieved area under the ROC curve of 0.95 for undirected and 0.942 for directed SCA in the case of high cell count threshold. This indicates that SCA can reliably estimate the strong cellular connections between voxels in fMRI data. We then used our directed SCA method to analyze the human default mode network (DMN) and found that dlPFC (dorsolateral prefrontal cortex) and temporal lobe were separated from other DMN regions, forming part of the language-network that works together with the core DMN regions. We also found that the cerebellum (Crus I-II) was strongly targeted by the posterior parietal cortices and dlPFC, but reciprocal connections were not observed. Thus, the cerebellum may not be a part of, but instead a target of, the DMN and language-network. Summarily, our novel directed SCA method, visualized with a new functional flat mapping technique, opens a new paradigm for whole-brain functional analysis.
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Affiliation(s)
- Takuto Okuno
- Connectome Analysis Unit, RIKEN Center for Brain Science, Saitama 351-0198, Japan
- Graduate School of Human Health Sciences, Tokyo Metropolitan University, Arakawa-ku 116-0012, Japan
| | - Junichi Hata
- Graduate School of Human Health Sciences, Tokyo Metropolitan University, Arakawa-ku 116-0012, Japan
- Laboratory of Marmoset Neural Architecture, RIKEN Center for Brain Science, Saitama 351-0198, Japan
| | - Chino Kawai
- Graduate School of Human Health Sciences, Tokyo Metropolitan University, Arakawa-ku 116-0012, Japan
| | - Hideyuki Okano
- Laboratory of Marmoset Neural Architecture, RIKEN Center for Brain Science, Saitama 351-0198, Japan
- Keio University Regenerative Medicine Research Center, Kawasaki 210-0821, Japan
| | - Alexander Woodward
- Connectome Analysis Unit, RIKEN Center for Brain Science, Saitama 351-0198, Japan
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10
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Billot A, Jhingan N, Varkanitsa M, Blank I, Ryskin R, Kiran S, Fedorenko E. The language network ages well: Preserved selectivity, lateralization, and within-network functional synchronization in older brains. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.10.23.619954. [PMID: 39484368 PMCID: PMC11527140 DOI: 10.1101/2024.10.23.619954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/03/2024]
Abstract
Healthy aging is associated with structural and functional brain changes. However, cognitive abilities differ from one another in how they change with age: whereas executive functions, like working memory, show age-related decline, aspects of linguistic processing remain relatively preserved (Hartshorne et al., 2015). This heterogeneity of the cognitive-behavioral landscape in aging predicts differences among brain networks in whether and how they should change with age. To evaluate this prediction, we used individual-subject fMRI analyses ('precision fMRI') to examine the language-selective network (Fedorenko et al., 2024) and the Multiple Demand (MD) network, which supports executive functions (Duncan et al., 2020), in older adults (n=77) relative to young controls (n=470). In line with past claims, relative to young adults, the MD network of older adults shows weaker and less spatially extensive activations during an executive function task and reduced within-network functional synchronization. However, in stark contrast to the MD network, we find remarkable preservation of the language network in older adults. Their language network responds to language as strongly and selectively as in younger adults, and is similarly lateralized and internally synchronized. In other words, the language network of older adults looks indistinguishable from that of younger adults. Our findings align with behavioral preservation of language skills in aging and suggest that some networks remain young-like, at least on standard measures of function and connectivity.
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Affiliation(s)
- Anne Billot
- Department of Neurology, Massachusetts General Hospital & Harvard Medical School; Boston, MA 02114
- Center for Brain Science, Harvard University, Cambridge, MA 02138
| | - Niharika Jhingan
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
| | - Maria Varkanitsa
- Department of Speech, Language, and Hearing Sciences, Boston University, Boston, MA 02215
| | - Idan Blank
- Department of Psychology and Department of Linguistics, University of California Los Angeles, Los Angeles, CA 90095
| | - Rachel Ryskin
- Department of Cognitive & Information Sciences, University of California Merced, Merced, CA 95343
| | - Swathi Kiran
- Department of Speech, Language, and Hearing Sciences, Boston University, Boston, MA 02215
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Boston, MA 02114
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11
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Regev TI, Casto C, Hosseini EA, Adamek M, Ritaccio AL, Willie JT, Brunner P, Fedorenko E. Neural populations in the language network differ in the size of their temporal receptive windows. Nat Hum Behav 2024; 8:1924-1942. [PMID: 39187713 DOI: 10.1038/s41562-024-01944-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 07/03/2024] [Indexed: 08/28/2024]
Abstract
Despite long knowing what brain areas support language comprehension, our knowledge of the neural computations that these frontal and temporal regions implement remains limited. One important unresolved question concerns functional differences among the neural populations that comprise the language network. Here we leveraged the high spatiotemporal resolution of human intracranial recordings (n = 22) to examine responses to sentences and linguistically degraded conditions. We discovered three response profiles that differ in their temporal dynamics. These profiles appear to reflect different temporal receptive windows, with average windows of about 1, 4 and 6 words, respectively. Neural populations exhibiting these profiles are interleaved across the language network, which suggests that all language regions have direct access to distinct, multiscale representations of linguistic input-a property that may be critical for the efficiency and robustness of language processing.
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Affiliation(s)
- Tamar I Regev
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA.
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
| | - Colton Casto
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA.
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
- Program in Speech and Hearing Bioscience and Technology (SHBT), Harvard University, Boston, MA, USA.
- Kempner Institute for the Study of Natural and Artificial Intelligence, Harvard University, Allston, MA, USA.
| | - Eghbal A Hosseini
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Markus Adamek
- National Center for Adaptive Neurotechnologies, Albany, NY, USA
- Department of Neurosurgery, Washington University School of Medicine, St Louis, MO, USA
| | | | - Jon T Willie
- National Center for Adaptive Neurotechnologies, Albany, NY, USA
- Department of Neurosurgery, Washington University School of Medicine, St Louis, MO, USA
| | - Peter Brunner
- National Center for Adaptive Neurotechnologies, Albany, NY, USA
- Department of Neurosurgery, Washington University School of Medicine, St Louis, MO, USA
- Department of Neurology, Albany Medical College, Albany, NY, USA
| | - Evelina Fedorenko
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA.
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
- Program in Speech and Hearing Bioscience and Technology (SHBT), Harvard University, Boston, MA, USA.
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12
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Genç B, Aslan K, Bako D, Delibalta S, Bilgici MNC. Cortical and subcortical structural changes in pediatric patients with infratentorial tumors. Diagn Interv Radiol 2024; 30:328-334. [PMID: 38836466 PMCID: PMC11590737 DOI: 10.4274/dir.2024.242652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 05/15/2024] [Indexed: 06/06/2024]
Abstract
PURPOSE This study aimed to detect supratentorial cortical and subcortical morphological changes in pediatric patients with infratentorial tumors. METHODS The study included 24 patients aged 4-18 years who were diagnosed with primary infratentorial tumors and 41 age- and gender-matched healthy controls. Synthetic magnetization-prepared rapid gradient echo images of brain magnetic resonance imaging were generated using deep learning algorithms applied to T2-axial images. The cortical thickness, surface area, volume, and local gyrification index (LGI), as well as subcortical gray matter volumes, were automatically calculated. Surface-based morphometry parameters for the patient and control groups were compared using the general linear model, and volumes between subcortical structures were compared using the t-test and Mann-Whitney U test. RESULTS In the patient group, cortical thinning was observed in the left supramarginal, and cortical thickening was observed in the left caudal middle frontal (CMF), left fusiform, left lateral orbitofrontal, left lingual gyrus, right CMF, right posterior cingulate, and right superior frontal (P < 0.050). The patient group showed a volume reduction in the pars triangularis, paracentral, precentral, and supramarginal gyri of the left hemisphere (P < 0.05). A decreased surface area was observed in the bilateral superior frontal and cingulate gyri (P < 0.05). The patient group exhibited a decreased LGI in the right precentral and superior temporal gyri, left supramarginal, and posterior cingulate gyri and showed an increased volume in the bilateral caudate nucleus and hippocampus, while a volume reduction was observed in the bilateral putamen, pallidum, and amygdala (P < 0.05). The ventricular volume and tumor volume showed a positive correlation with the cortical thickness in the bilateral CMF while demonstrating a negative correlation with areas exhibiting a decreased LGI (P < 0.05). CONCLUSION Posterior fossa tumors lead to widespread morphological changes in cortical structures, with the most prominent pattern being hypogyria. CLINICAL SIGNIFICANCE This study illuminates the neurological impacts of infratentorial tumors in children, providing a foundation for future therapeutic strategies aimed at mitigating these adverse cortical and subcortical changes and improving patient outcomes.
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Affiliation(s)
- Barış Genç
- Ondokuz Mayıs University Faculty of Medicine, Department of Neuroradiology, Samsun, Türkiye
| | - Kerim Aslan
- Ondokuz Mayıs University Faculty of Medicine, Department of Neuroradiology, Samsun, Türkiye
| | - Derya Bako
- Ondokuz Mayıs University Faculty of Medicine, Department of Neuroradiology, Samsun, Türkiye
| | - Semra Delibalta
- Acıbadem University, Atakent Hospital, Clinic of Radiology, İstanbul, Türkiye
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13
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Olson HA, Johnson KT, Nishith S, Frosch IR, Gabrieli JD, D’Mello AM. Personalized Neuroimaging Reveals the Impact of Children's Interests on Language Processing in the Brain. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.03.21.533695. [PMID: 36993522 PMCID: PMC10055317 DOI: 10.1101/2023.03.21.533695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Cognition is shaped by individual experiences and interests. However, to study cognition in the brain, researchers typically use generic stimuli that are the same across all individuals. Language, in particular, is animated and motivated by several highly personal factors that are typically not accounted for in neuroimaging study designs, such as "interest" in a topic. Due to its inherently personal and idiosyncratic nature, it is unknown how interest in a topic modulates language processing in the brain. We conducted functional magnetic resonance imaging (fMRI) in 20 children (ages 6.98-12.01 years, mean(SD)=9.35(1.52), 5 female/15 male) as they listened to personalized narratives about a topic of specific interest, as well as to non-personalized generic narratives. We found that personalized narratives about a topic of interest increased activation in canonical language areas, as well as in reward and self-reference regions. Strikingly, we found that activation patterns elicited by topics of personal interest were more consistent across children, despite their idiosyncratic nature, than activation patterns elicited by narratives about an identical generic topic. These results reinforce the critical role that personal interests play in language processing in the human brain, and demonstrate the feasibility of using a personalized neuroimaging approach to study the effects of individually-varying factors such as interest in the brain.
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Affiliation(s)
- Halie A. Olson
- McGovern Institute for Brain Research, Massachusetts Institute of Technology
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology
| | - Kristina T. Johnson
- Department of Electrical & Computer Engineering, Northeastern University
- Department of Communication Sciences & Disorders, Northeastern University
| | - Shruti Nishith
- McGovern Institute for Brain Research, Massachusetts Institute of Technology
| | | | - John D.E. Gabrieli
- McGovern Institute for Brain Research, Massachusetts Institute of Technology
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology
| | - Anila M. D’Mello
- Department of Psychiatry, University of Texas Southwestern Medical Center
- Peter O’Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center
- Department of Psychology, University of Texas Dallas
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14
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Cuskley C, Woods R, Flaherty M. The Limitations of Large Language Models for Understanding Human Language and Cognition. Open Mind (Camb) 2024; 8:1058-1083. [PMID: 39229609 PMCID: PMC11370970 DOI: 10.1162/opmi_a_00160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 07/19/2024] [Indexed: 09/05/2024] Open
Abstract
Researchers have recently argued that the capabilities of Large Language Models (LLMs) can provide new insights into longstanding debates about the role of learning and/or innateness in the development and evolution of human language. Here, we argue on two grounds that LLMs alone tell us very little about human language and cognition in terms of acquisition and evolution. First, any similarities between human language and the output of LLMs are purely functional. Borrowing the "four questions" framework from ethology, we argue that what LLMs do is superficially similar, but how they do it is not. In contrast to the rich multimodal data humans leverage in interactive language learning, LLMs rely on immersive exposure to vastly greater quantities of unimodal text data, with recent multimodal efforts built upon mappings between images and text. Second, turning to functional similarities between human language and LLM output, we show that human linguistic behavior is much broader. LLMs were designed to imitate the very specific behavior of human writing; while they do this impressively, the underlying mechanisms of these models limit their capacities for meaning and naturalistic interaction, and their potential for dealing with the diversity in human language. We conclude by emphasising that LLMs are not theories of language, but tools that may be used to study language, and that can only be effectively applied with specific hypotheses to motivate research.
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Affiliation(s)
- Christine Cuskley
- Language Evolution, Acquisition and Development Group, Newcastle University, Newcastle upon Tyne, UK
| | - Rebecca Woods
- Language Evolution, Acquisition and Development Group, Newcastle University, Newcastle upon Tyne, UK
| | - Molly Flaherty
- Department of Psychology, Davidson College, Davidson, NC, USA
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15
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Tuckute G, Kanwisher N, Fedorenko E. Language in Brains, Minds, and Machines. Annu Rev Neurosci 2024; 47:277-301. [PMID: 38669478 DOI: 10.1146/annurev-neuro-120623-101142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2024]
Abstract
It has long been argued that only humans could produce and understand language. But now, for the first time, artificial language models (LMs) achieve this feat. Here we survey the new purchase LMs are providing on the question of how language is implemented in the brain. We discuss why, a priori, LMs might be expected to share similarities with the human language system. We then summarize evidence that LMs represent linguistic information similarly enough to humans to enable relatively accurate brain encoding and decoding during language processing. Finally, we examine which LM properties-their architecture, task performance, or training-are critical for capturing human neural responses to language and review studies using LMs as in silico model organisms for testing hypotheses about language. These ongoing investigations bring us closer to understanding the representations and processes that underlie our ability to comprehend sentences and express thoughts in language.
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Affiliation(s)
- Greta Tuckute
- Department of Brain and Cognitive Sciences and McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA;
| | - Nancy Kanwisher
- Department of Brain and Cognitive Sciences and McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA;
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences and McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA;
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16
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Humpston CS, Woodward TS. Soundless voices, silenced selves: are auditory verbal hallucinations in schizophrenia truly perceptual? Lancet Psychiatry 2024; 11:658-664. [PMID: 38631367 DOI: 10.1016/s2215-0366(24)00061-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 02/16/2024] [Accepted: 02/19/2024] [Indexed: 04/19/2024]
Abstract
In much contemporary psychiatric training and practice, there is a strong emphasis on the audible or perceptual quality and externality of auditory verbal hallucinations in clinical assessments. A typical question during clinical assessment is asking whether the voices that a person hears sound identical to the way the clinician's voice is heard. In this Personal View, we argue that the most important factor in auditory verbal hallucinations in schizophrenia spectrum psychoses is a loss of first-person authority, and that a perceptual quality is not required for it to be this kind of hallucination. We draw on evidence from cognitive neuroscience showing that the activation of brain networks retrieved during capture of auditory verbal hallucinations that were experienced when a patient was in a functional MRI scanner does not match activation of networks retrieved during auditory perception. We propose that, despite early writings by Esquirol and Schneider that defined auditory verbal hallucinations as beliefs in perception rather than true perception, cognitive neuroscience, psychiatric training and practice, and patients adopting clinical vocabulary have been strongly influenced by the progression of the diagnostic criteria for schizophrenia, which increasingly place emphasis on language, such as the "full force" of a true perception. We hold that this change has resulted in an unhelpful top-down influence on the field, imposing perceptual qualities on auditory verbal hallucinations, and leading to misunderstandings and inaccuracies in clinical practice and patients' self-reports, and misinterpretations in cognitive neuroscience. We encourage a revision of the definition of auditory verbal hallucinations to move away from the necessity for auditory perception, and towards beliefs in perception due to the loss of first-person authority.
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Affiliation(s)
- Clara S Humpston
- Department of Psychology, University of York, York, UK; School of Psychology, University of Birmingham, Birmingham, UK.
| | - Todd S Woodward
- Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada; BC Mental Health and Substance Use Services Research Institute, Vancouver, BC, Canada
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17
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Tang X, Turesky TK, Escalante ES, Loh MY, Xia M, Yu X, Gaab N. Longitudinal associations between language network characteristics in the infant brain and school-age reading abilities are mediated by early-developing phonological skills. Dev Cogn Neurosci 2024; 68:101405. [PMID: 38875769 PMCID: PMC11225703 DOI: 10.1016/j.dcn.2024.101405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 04/30/2024] [Accepted: 06/06/2024] [Indexed: 06/16/2024] Open
Abstract
Reading acquisition is a prolonged learning process relying on language development starting in utero. Behavioral longitudinal studies reveal prospective associations between infant language abilities and preschool/kindergarten phonological development that relates to subsequent reading performance. While recent pediatric neuroimaging work has begun to characterize the neural network underlying language development in infants, how this neural network scaffolds long-term language and reading acquisition remains unknown. We addressed this question in a 7-year longitudinal study from infancy to school-age. Seventy-six infants completed resting-state fMRI scanning, and underwent standardized language assessments in kindergarten. Of this larger cohort, forty-one were further assessed on their emergent word reading abilities after receiving formal reading instructions. Hierarchical clustering analyses identified a modular infant language network in which functional connectivity (FC) of the inferior frontal module prospectively correlated with kindergarten-age phonological skills and emergent word reading abilities. These correlations were obtained when controlling for infant age at scan, nonverbal IQ and parental education. Furthermore, kindergarten-age phonological skills mediated the relationship between infant FC and school-age reading abilities, implying a critical mid-way milestone for long-term reading development from infancy. Overall, our findings illuminate the neurobiological mechanisms by which infant language capacities could scaffold long-term reading acquisition.
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Affiliation(s)
- Xinyi Tang
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing 100875, China
| | - Ted K Turesky
- Harvard Graduate School of Education, Harvard University, Cambridge, MA 02138, USA
| | - Elizabeth S Escalante
- Harvard Graduate School of Education, Harvard University, Cambridge, MA 02138, USA; Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill, Chapel Hill, NC 27514, USA
| | - Megan Yf Loh
- Harvard Graduate School of Education, Harvard University, Cambridge, MA 02138, USA
| | - Mingrui Xia
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing 100875, China
| | - Xi Yu
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing 100875, China.
| | - Nadine Gaab
- Harvard Graduate School of Education, Harvard University, Cambridge, MA 02138, USA
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18
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Zhu H, Michalak AJ, Merricks EM, Agopyan-Miu AHCW, Jacobs J, Hamberger MJ, Sheth SA, McKhann GM, Feldstein N, Schevon CA, Hillman EMC. Spectral-switching analysis reveals real-time neuronal network representations of concurrent spontaneous naturalistic behaviors in human brain. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.08.600416. [PMID: 39026706 PMCID: PMC11257469 DOI: 10.1101/2024.07.08.600416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
Despite abundant evidence of functional networks in the human brain, their neuronal underpinnings, and relationships to real-time behavior have been challenging to resolve. Analyzing brain-wide intracranial-EEG recordings with video monitoring, acquired in awake subjects during clinical epilepsy evaluation, we discovered the tendency of each brain region to switch back and forth between 2 distinct power spectral densities (PSDs 2-55Hz). We further recognized that this 'spectral switching' occurs synchronously between distant sites, even between regions with differing baseline PSDs, revealing long-range functional networks that would be obscured in analysis of individual frequency bands. Moreover, the real-time PSD-switching dynamics of specific networks exhibited striking alignment with activities such as conversation and hand movements, revealing a multi-threaded functional network representation of concurrent naturalistic behaviors. Network structures and their relationships to behaviors were stable across days, but were altered during N3 sleep. Our results provide a new framework for understanding real-time, brain-wide neural-network dynamics.
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Affiliation(s)
- Hongkun Zhu
- Department of Biomedical Engineering, Columbia University
- Department of Neurology, Columbia University Irving Medical Center, New York, NY 10032, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027
| | - Andrew J Michalak
- Department of Neurology, Columbia University Irving Medical Center, New York, NY 10032, USA
| | - Edward M Merricks
- Department of Neurology, Columbia University Irving Medical Center, New York, NY 10032, USA
| | | | - Joshua Jacobs
- Department of Biomedical Engineering, Columbia University
- Department of Neurological Surgery, Columbia University Medical Center, New York, 10032, New York, USA
| | - Marla J Hamberger
- Department of Neurology, Columbia University Irving Medical Center, New York, NY 10032, USA
| | - Sameer A Sheth
- Department of Neurological Surgery, Baylor College of Medicine, Houston, TX, 77030, USA
| | - Guy M McKhann
- Department of Neurological Surgery, Columbia University Medical Center, New York, 10032, New York, USA
| | - Neil Feldstein
- Department of Neurological Surgery, Columbia University Medical Center, New York, 10032, New York, USA
| | - Catherine A Schevon
- Department of Neurology, Columbia University Irving Medical Center, New York, NY 10032, USA
| | - Elizabeth M C Hillman
- Department of Biomedical Engineering, Columbia University
- Department of Radiology, Columbia University Medical Center, New York, 10032, New York, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027
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19
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Besso L, Larivière S, Roes M, Sanford N, Percival C, Damascelli M, Momeni A, Lavigne K, Menon M, Aleman A, Ćurčić-Blake B, Woodward TS. Hypoactivation of the language network during auditory imagery contributes to hallucinations in Schizophrenia. Psychiatry Res Neuroimaging 2024; 341:111824. [PMID: 38754348 DOI: 10.1016/j.pscychresns.2024.111824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 04/20/2024] [Accepted: 05/01/2024] [Indexed: 05/18/2024]
Abstract
Auditory verbal hallucinations (AVHs) involve perceptions, often voices, in the absence of external stimuli, and rank among the most common symptoms of schizophrenia. Metrical stress evaluation requires determination of the stronger syllable in words, and therefore requires auditory imagery, of interest for investigation of hallucinations in schizophrenia. The current functional magnetic resonance imaging study provides an updated whole-brain network analysis of a previously published study on metrical stress, which showed reduced directed connections between Broca's and Wernicke's regions of interest (ROIs) for hallucinations. Three functional brain networks were extracted, with the language network (LN) showing an earlier and shallower blood-oxygen-level dependent (BOLD) response for hallucinating patients, in the auditory imagery condition only (the reduced activation for hallucinations observed in the original ROI-based results were not specific to the imagery condition). This suggests that hypoactivation of the LN during internal auditory imagery may contribute to the propensity to hallucinate. This accords with cognitive accounts holding that an impaired balance between internal and external linguistic processes (underactivity in networks involved in internal auditory imagery and overactivity in networks involved in speech perception) contributes to our understanding of the biological underpinnings of hallucinations.
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Affiliation(s)
- Luca Besso
- BC Mental Health and Addictions Research Institute, Provincial Health Services Authority, Vancouver, BC, Canada; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada
| | - Sara Larivière
- Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| | - Meighen Roes
- BC Mental Health and Addictions Research Institute, Provincial Health Services Authority, Vancouver, BC, Canada; Department of Psychology, University of British Columbia, Vancouver, BC, Canada
| | - Nicole Sanford
- Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada
| | - Chantal Percival
- BC Mental Health and Addictions Research Institute, Provincial Health Services Authority, Vancouver, BC, Canada; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada; Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada
| | - Matteo Damascelli
- School of Population and Public Health, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada
| | - Ava Momeni
- BC Mental Health and Addictions Research Institute, Provincial Health Services Authority, Vancouver, BC, Canada; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada
| | - Katie Lavigne
- Douglas Research Centre, Montreal, Quebec, Canada; Department of Psychiatry, McGill University, Montreal, Quebec, Canada
| | - Mahesh Menon
- Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada
| | - André Aleman
- Department of Biomedical Sciences of Cells and Systems, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - Branislava Ćurčić-Blake
- Department of Biomedical Sciences of Cells and Systems, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - Todd S Woodward
- BC Mental Health and Addictions Research Institute, Provincial Health Services Authority, Vancouver, BC, Canada; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada.
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20
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Panikratova YR, Tomyshev AS, Abdullina EG, Rodionov GI, Arkhipov AY, Tikhonov DV, Bozhko OV, Kaleda VG, Strelets VB, Lebedeva IS. Resting-state functional connectivity correlates of brain structural aging in schizophrenia. Eur Arch Psychiatry Clin Neurosci 2024:10.1007/s00406-024-01837-5. [PMID: 38914851 DOI: 10.1007/s00406-024-01837-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 05/27/2024] [Indexed: 06/26/2024]
Abstract
A large body of research has shown that schizophrenia patients demonstrate increased brain structural aging. Although this process may be coupled with aberrant changes in intrinsic functional architecture of the brain, they remain understudied. We hypothesized that there are brain regions whose whole-brain functional connectivity at rest is differently associated with brain structural aging in schizophrenia patients compared to healthy controls. Eighty-four male schizophrenia patients and eighty-six male healthy controls underwent structural MRI and resting-state fMRI. The brain-predicted age difference (b-PAD) was a measure of brain structural aging. Resting-state fMRI was applied to obtain global correlation (GCOR) maps comprising voxelwise values of the strength and sign of functional connectivity of a given voxel with the rest of the brain. Schizophrenia patients had higher b-PAD compared to controls (mean between-group difference + 2.9 years). Greater b-PAD in schizophrenia patients, compared to controls, was associated with lower whole-brain functional connectivity of a region in frontal orbital cortex, inferior frontal gyrus, Heschl's Gyrus, plana temporale and polare, insula, and opercular cortices of the right hemisphere (rFTI). According to post hoc seed-based correlation analysis, decrease of functional connectivity with the posterior cingulate gyrus, left superior temporal cortices, as well as right angular gyrus/superior lateral occipital cortex has mainly driven the results. Lower functional connectivity of the rFTI was related to worse verbal working memory and language production. Our findings demonstrate that well-established frontotemporal functional abnormalities in schizophrenia are related to increased brain structural aging.
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Affiliation(s)
| | | | | | - Georgiy I Rodionov
- Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Moscow, Russia
| | - Andrey Yu Arkhipov
- Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Moscow, Russia
| | | | | | | | - Valeria B Strelets
- Institute of Higher Nervous Activity and Neurophysiology of Russian Academy of Sciences, Moscow, Russia
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21
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Hiersche KJ, Schettini E, Li J, Saygin ZM. Functional dissociation of the language network and other cognition in early childhood. Hum Brain Mapp 2024; 45:e26757. [PMID: 38888027 PMCID: PMC11184366 DOI: 10.1002/hbm.26757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 05/28/2024] [Accepted: 05/29/2024] [Indexed: 06/20/2024] Open
Abstract
Is language distinct from other cognition during development? Does neural machinery for language emerge from general-purpose neural mechanisms, becoming tuned for language after years of experience and maturation? Answering these questions will shed light on the origins of domain-specificity in the brain. We address these questions using precision fMRI, scanning young children (35 months to 9 years of age) on an auditory language localizer, spatial working memory localizer (engaging the domain-general multiple demand [MD] network), and a resting-state scan. We create subject-specific functional regions of interest for each network and examine their selectivity, specificity, and functional connectivity. We find young children show domain-specific, left-lateralized language activation, and that the language network is not responsive to domain-general cognitive load. Additionally, the cortically adjacent MD network is selective to cognitive load, but not to language. These networks show higher within versus between-network functional connectivity. This connectivity is stable across ages (examined cross-sectionally and longitudinally), whereas language responses increase with age and across time within subject, reflecting a domain-specific developmental change. Overall, we provide evidence for a double dissociation of the language and MD network throughout development, in both their function and connectivity. These findings suggest that domain-specificity, even for uniquely human cognition like language, develops early and distinctly from mechanisms that presumably support other human cognition.
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Affiliation(s)
- K. J. Hiersche
- Department of PsychologyThe Ohio State UniversityColumbusOhioUSA
- Center for Cognitive and Behavioral Brain Imaging, The Ohio State UniversityColumbusOhioUSA
| | - E. Schettini
- Department of PsychologyThe Ohio State UniversityColumbusOhioUSA
- Center for Cognitive and Behavioral Brain Imaging, The Ohio State UniversityColumbusOhioUSA
| | - J. Li
- Department of PsychologyThe Ohio State UniversityColumbusOhioUSA
- Center for Cognitive and Behavioral Brain Imaging, The Ohio State UniversityColumbusOhioUSA
| | - Z. M. Saygin
- Department of PsychologyThe Ohio State UniversityColumbusOhioUSA
- Center for Cognitive and Behavioral Brain Imaging, The Ohio State UniversityColumbusOhioUSA
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22
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Ozernov-Palchik O, O’Brien AM, Jiachen Lee E, Richardson H, Romeo R, Lipkin B, Small H, Capella J, Nieto-Castañón A, Saxe R, Gabrieli JDE, Fedorenko E. Precision fMRI reveals that the language network exhibits adult-like left-hemispheric lateralization by 4 years of age. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.15.594172. [PMID: 38798360 PMCID: PMC11118489 DOI: 10.1101/2024.05.15.594172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Left hemisphere damage in adulthood often leads to linguistic deficits, but many cases of early damage leave linguistic processing preserved, and a functional language system can develop in the right hemisphere. To explain this early apparent equipotentiality of the two hemispheres for language, some have proposed that the language system is bilateral during early development and only becomes left-lateralized with age. We examined language lateralization using functional magnetic resonance imaging with two large pediatric cohorts (total n=273 children ages 4-16; n=107 adults). Strong, adult-level left-hemispheric lateralization (in activation volume and response magnitude) was evident by age 4. Thus, although the right hemisphere can take over language function in some cases of early brain damage, and although some features of the language system do show protracted development (magnitude of language response and strength of inter-regional correlations in the language network), the left-hemisphere bias for language is robustly present by 4 years of age. These results call for alternative accounts of early equipotentiality of the two hemispheres for language.
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Affiliation(s)
- Ola Ozernov-Palchik
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
| | - Amanda M. O’Brien
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA 02138, United States
| | - Elizabeth Jiachen Lee
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
| | - Hilary Richardson
- School of Philosophy, Psychology, and Language Sciences, University of Edinburgh, Edinburgh, EH8 9JZ, United Kingdom
| | - Rachel Romeo
- Department of Human Development and Quantitative Methodology, University of Maryland, College Park, MD 20742, United States
| | - Benjamin Lipkin
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
| | - Hannah Small
- Department of Cognitive Science, Johns Hopkins University, Baltimore, MD, 21218, United States
| | - Jimmy Capella
- Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States
| | | | - Rebecca Saxe
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
| | - John D. E. Gabrieli
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
| | - Evelina Fedorenko
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
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23
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Tang X, Turesky TK, Escalante ES, Loh MY, Xia M, Yu X, Gaab N. Longitudinal associations between language network characteristics in the infant brain and school-age reading abilities are mediated by early-developing phonological skills. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.06.22.546194. [PMID: 38895379 PMCID: PMC11185523 DOI: 10.1101/2023.06.22.546194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]
Abstract
Reading acquisition is a prolonged learning process relying on language development starting in utero. Behavioral longitudinal studies reveal prospective associations between infant language abilities and preschool/kindergarten phonological development that relates to subsequent reading performance. While recent pediatric neuroimaging work has begun to characterize the neural network underlying language development in infants, how this neural network scaffolds long-term language and reading acquisition remains unknown. We addressed this question in a 7-year longitudinal study from infancy to school-age. Seventy-six infants completed resting-state fMRI scanning, and underwent standardized language assessments in kindergarten. Of this larger cohort, forty-one were further assessed on their emergent word reading abilities after receiving formal reading instructions. Hierarchical clustering analyses identified a modular infant language network in which functional connectivity (FC) of the inferior frontal module prospectively correlated with kindergarten-age phonological skills and emergent word reading abilities. These correlations were obtained when controlling for infant age at scan, nonverbal IQ and parental education. Furthermore, kindergarten-age phonological skills mediated the relationship between infant FC and school-age reading abilities, implying a critical mid-way milestone for long-term reading development from infancy. Overall, our findings illuminate the neurobiological mechanisms by which infant language capacities could scaffold long-term reading acquisition.
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Affiliation(s)
- Xinyi Tang
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China, 100875
| | - Ted K. Turesky
- Harvard Graduate School of Education, Harvard University, Cambridge, Massachusetts, USA, 02138
| | - Elizabeth S. Escalante
- Harvard Graduate School of Education, Harvard University, Cambridge, Massachusetts, USA, 02138
| | - Megan Yf Loh
- Harvard Graduate School of Education, Harvard University, Cambridge, Massachusetts, USA, 02138
| | - Mingrui Xia
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China, 100875
| | - Xi Yu
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China, 100875
| | - Nadine Gaab
- Harvard Graduate School of Education, Harvard University, Cambridge, Massachusetts, USA, 02138
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24
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Sueoka Y, Paunov A, Tanner A, Blank IA, Ivanova A, Fedorenko E. The Language Network Reliably "Tracks" Naturalistic Meaningful Nonverbal Stimuli. NEUROBIOLOGY OF LANGUAGE (CAMBRIDGE, MASS.) 2024; 5:385-408. [PMID: 38911462 PMCID: PMC11192443 DOI: 10.1162/nol_a_00135] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 01/08/2024] [Indexed: 06/25/2024]
Abstract
The language network, comprised of brain regions in the left frontal and temporal cortex, responds robustly and reliably during language comprehension but shows little or no response during many nonlinguistic cognitive tasks (e.g., Fedorenko & Blank, 2020). However, one domain whose relationship with language remains debated is semantics-our conceptual knowledge of the world. Given that the language network responds strongly to meaningful linguistic stimuli, could some of this response be driven by the presence of rich conceptual representations encoded in linguistic inputs? In this study, we used a naturalistic cognition paradigm to test whether the cognitive and neural resources that are responsible for language processing are also recruited for processing semantically rich nonverbal stimuli. To do so, we measured BOLD responses to a set of ∼5-minute-long video and audio clips that consisted of meaningful event sequences but did not contain any linguistic content. We then used the intersubject correlation (ISC) approach (Hasson et al., 2004) to examine the extent to which the language network "tracks" these stimuli, that is, exhibits stimulus-related variation. Across all the regions of the language network, meaningful nonverbal stimuli elicited reliable ISCs. These ISCs were higher than the ISCs elicited by semantically impoverished nonverbal stimuli (e.g., a music clip), but substantially lower than the ISCs elicited by linguistic stimuli. Our results complement earlier findings from controlled experiments (e.g., Ivanova et al., 2021) in providing further evidence that the language network shows some sensitivity to semantic content in nonverbal stimuli.
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Affiliation(s)
- Yotaro Sueoka
- Department of Brain and Cognitive Sciences, Massachusetts Instititute of Technology, Cambridge, MA, USA
- Department of Neuroscience, Johns Hopkins University, Baltimore, MD, USA
| | - Alexander Paunov
- Department of Brain and Cognitive Sciences, Massachusetts Instititute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Instititute of Technology, Cambridge, MA, USA
- Cognitive Neuroimaging Unit, INSERM, CEA, CNRS, Université Paris-Saclay, NeuroSpin center, Gif/Yvette, France
| | - Alyx Tanner
- McGovern Institute for Brain Research, Massachusetts Instititute of Technology, Cambridge, MA, USA
| | - Idan A. Blank
- Department of Psychology and Linguistics, University of California Los Angeles, Los Angeles, CA, USA
| | - Anna Ivanova
- School of Psychology, Georgia Institute of Technology, Atlanta, GA, USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Instititute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Instititute of Technology, Cambridge, MA, USA
- Program in Speech and Hearing Biosciences and Technology, Harvard University, Cambridge, MA, USA
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25
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Lee J, Kumar VA, Teo JM, Eldaya RW, Hou P, Noll KR, Ferguson SD, Prabhu SS, Liu H. Comparative analysis of brain language templates with primary language areas detected from presurgical fMRI of brain tumor patients. Brain Behav 2024; 14:e3497. [PMID: 38898620 PMCID: PMC11186848 DOI: 10.1002/brb3.3497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 02/15/2024] [Accepted: 03/21/2024] [Indexed: 06/21/2024] Open
Abstract
INTRODUCTION Functional brain templates are often used in the analysis of clinical functional MRI (fMRI) studies. However, these templates are mostly built based on anatomy or fMRI of healthy subjects, which have not been fully vetted in clinical cohorts. Our aim was to evaluate language templates by comparing with primary language areas (PLAs) detected from presurgical fMRI of brain tumor patients. METHODS Four language templates (A-D) based on anatomy, task-based fMRI, resting-state fMRI, and meta-analysis, respectively, were compared with PLAs detected by fMRI with word generation and sentence completion paradigms. For each template, the fraction of PLA activations enclosed by the template (positive inclusion fraction, [PIF]), the fraction of activations within the template but that did not belong to PLAs (false inclusion fraction, [FIF]), and their Dice similarity coefficient (DSC) with PLA activations were calculated. RESULTS For anterior PLAs, Template A had the greatest PIF (median, 0.95), whereas Template D had both the lowest FIF (median, 0.074), and the highest DSC (median, 0.30), which were all significant compared to other templates. For posterior PLAs, Templates B and D had similar PIF (median, 0.91 and 0.90, respectively) and DSC (both medians, 0.059), which were all significantly higher than that of Template C. Templates B and C had significantly lower FIF (median, 0.061 and 0.054, respectively) compared to Template D. CONCLUSION This study demonstrated significant differences between language templates in their inclusiveness of and spatial agreement with the PLAs detected in the presurgical fMRI of the patient cohort. These findings may help guide the selection of language templates tailored to their applications in clinical fMRI studies.
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Affiliation(s)
- Jina Lee
- Department of NeuroradiologyThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Vinodh A. Kumar
- Department of NeuroradiologyThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Jian Ming Teo
- Department of Imaging PhysicsThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
- The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical SciencesHoustonTexasUSA
| | - Rami W. Eldaya
- Department of NeuroradiologyThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Ping Hou
- Department of Imaging PhysicsThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Kyle R. Noll
- Department of Neuro‐OncologyThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Sherise D. Ferguson
- Department of NeurosurgeryThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Sujit S. Prabhu
- Department of NeurosurgeryThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
| | - Ho‐Ling Liu
- Department of Imaging PhysicsThe University of Texas MD Anderson Cancer CenterHoustonTexasUSA
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26
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Shain C, Kean H, Casto C, Lipkin B, Affourtit J, Siegelman M, Mollica F, Fedorenko E. Distributed Sensitivity to Syntax and Semantics throughout the Language Network. J Cogn Neurosci 2024; 36:1427-1471. [PMID: 38683732 DOI: 10.1162/jocn_a_02164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Human language is expressive because it is compositional: The meaning of a sentence (semantics) can be inferred from its structure (syntax). It is commonly believed that language syntax and semantics are processed by distinct brain regions. Here, we revisit this claim using precision fMRI methods to capture separation or overlap of function in the brains of individual participants. Contrary to prior claims, we find distributed sensitivity to both syntax and semantics throughout a broad frontotemporal brain network. Our results join a growing body of evidence for an integrated network for language in the human brain within which internal specialization is primarily a matter of degree rather than kind, in contrast with influential proposals that advocate distinct specialization of different brain areas for different types of linguistic functions.
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Affiliation(s)
| | - Hope Kean
- Massachusetts Institute of Technology
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27
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Cai W, Young CB, Yuan R, Lee B, Ryman S, Kim J, Yang L, Levine TF, Henderson VW, Poston KL, Menon V. Subthalamic nucleus-language network connectivity predicts dopaminergic modulation of speech function in Parkinson's disease. Proc Natl Acad Sci U S A 2024; 121:e2316149121. [PMID: 38768342 PMCID: PMC11145286 DOI: 10.1073/pnas.2316149121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 04/15/2024] [Indexed: 05/22/2024] Open
Abstract
Speech impediments are a prominent yet understudied symptom of Parkinson's disease (PD). While the subthalamic nucleus (STN) is an established clinical target for treating motor symptoms, these interventions can lead to further worsening of speech. The interplay between dopaminergic medication, STN circuitry, and their downstream effects on speech in PD is not yet fully understood. Here, we investigate the effect of dopaminergic medication on STN circuitry and probe its association with speech and cognitive functions in PD patients. We found that changes in intrinsic functional connectivity of the STN were associated with alterations in speech functions in PD. Interestingly, this relationship was characterized by altered functional connectivity of the dorsolateral and ventromedial subdivisions of the STN with the language network. Crucially, medication-induced changes in functional connectivity between the STN's dorsolateral subdivision and key regions in the language network, including the left inferior frontal cortex and the left superior temporal gyrus, correlated with alterations on a standardized neuropsychological test requiring oral responses. This relation was not observed in the written version of the same test. Furthermore, changes in functional connectivity between STN and language regions predicted the medication's downstream effects on speech-related cognitive performance. These findings reveal a previously unidentified brain mechanism through which dopaminergic medication influences speech function in PD. Our study sheds light into the subcortical-cortical circuit mechanisms underlying impaired speech control in PD. The insights gained here could inform treatment strategies aimed at mitigating speech deficits in PD and enhancing the quality of life for affected individuals.
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Affiliation(s)
- Weidong Cai
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305
- Wu Tsai Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305
| | - Christina B Young
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Rui Yuan
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Byeongwook Lee
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Sephira Ryman
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Jeehyun Kim
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Laurice Yang
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Taylor F Levine
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
| | - Victor W Henderson
- Wu Tsai Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
- Department of Epidemiology and Population Health, Stanford University School of Medicine, Stanford, CA 94305
| | - Kathleen L Poston
- Wu Tsai Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
- Department of Neurosurgery, Stanford University School of Medicine, Stanford, CA 94305
| | - Vinod Menon
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94305
- Wu Tsai Neurosciences Institute, Stanford University School of Medicine, Stanford, CA 94305
- Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305
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28
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Fedorenko E, Ivanova AA, Regev TI. The language network as a natural kind within the broader landscape of the human brain. Nat Rev Neurosci 2024; 25:289-312. [PMID: 38609551 DOI: 10.1038/s41583-024-00802-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/23/2024] [Indexed: 04/14/2024]
Abstract
Language behaviour is complex, but neuroscientific evidence disentangles it into distinct components supported by dedicated brain areas or networks. In this Review, we describe the 'core' language network, which includes left-hemisphere frontal and temporal areas, and show that it is strongly interconnected, independent of input and output modalities, causally important for language and language-selective. We discuss evidence that this language network plausibly stores language knowledge and supports core linguistic computations related to accessing words and constructions from memory and combining them to interpret (decode) or generate (encode) linguistic messages. We emphasize that the language network works closely with, but is distinct from, both lower-level - perceptual and motor - mechanisms and higher-level systems of knowledge and reasoning. The perceptual and motor mechanisms process linguistic signals, but, in contrast to the language network, are sensitive only to these signals' surface properties, not their meanings; the systems of knowledge and reasoning (such as the system that supports social reasoning) are sometimes engaged during language use but are not language-selective. This Review lays a foundation both for in-depth investigations of these different components of the language processing pipeline and for probing inter-component interactions.
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Affiliation(s)
- Evelina Fedorenko
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA.
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
- The Program in Speech and Hearing in Bioscience and Technology, Harvard University, Cambridge, MA, USA.
| | - Anna A Ivanova
- School of Psychology, Georgia Institute of Technology, Atlanta, GA, USA
| | - Tamar I Regev
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
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29
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Hartwigsen G, Lim JS, Bae HJ, Yu KH, Kuijf HJ, Weaver NA, Biesbroek JM, Kopal J, Bzdok D. Bayesian modelling disentangles language versus executive control disruption in stroke. Brain Commun 2024; 6:fcae129. [PMID: 38707712 PMCID: PMC11069117 DOI: 10.1093/braincomms/fcae129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 02/06/2024] [Accepted: 04/09/2024] [Indexed: 05/07/2024] Open
Abstract
Stroke is the leading cause of long-term disability worldwide. Incurred brain damage can disrupt cognition, often with persisting deficits in language and executive capacities. Yet, despite their clinical relevance, the commonalities and differences between language versus executive control impairments remain under-specified. To fill this gap, we tailored a Bayesian hierarchical modelling solution in a largest-of-its-kind cohort (1080 patients with stroke) to deconvolve language and executive control with respect to the stroke topology. Cognitive function was assessed with a rich neuropsychological test battery including global cognitive function (tested with the Mini-Mental State Exam), language (assessed with a picture naming task), executive speech function (tested with verbal fluency tasks), executive control functions (Trail Making Test and Digit Symbol Coding Task), visuospatial functioning (Rey Complex Figure), as well as verbal learning and memory function (Soul Verbal Learning). Bayesian modelling predicted interindividual differences in eight cognitive outcome scores three months after stroke based on specific tissue lesion topologies. A multivariate factor analysis extracted four distinct cognitive factors that distinguish left- and right-hemispheric contributions to ischaemic tissue lesions. These factors were labelled according to the neuropsychological tests that had the strongest factor loadings: One factor delineated language and general cognitive performance and was mainly associated with damage to left-hemispheric brain regions in the frontal and temporal cortex. A factor for executive control summarized mental flexibility, task switching and visual-constructional abilities. This factor was strongly related to right-hemispheric brain damage of posterior regions in the occipital cortex. The interplay of language and executive control was reflected in two distinct factors that were labelled as executive speech functions and verbal memory. Impairments on both factors were mainly linked to left-hemispheric lesions. These findings shed light onto the causal implications of hemispheric specialization for cognition; and make steps towards subgroup-specific treatment protocols after stroke.
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Affiliation(s)
- Gesa Hartwigsen
- Wilhelm Wundt Institute for Psychology, Leipzig University, 04109 Leipzig, Germany
- Research Group Cognition and Plasticity, Max Planck Institute for Human Cognitive and Brain Sciences, 04103 Leipzig, Germany
| | - Jae-Sung Lim
- Department of Neurology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, South Korea
| | - Hee-Joon Bae
- Department of Neurology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seoul, 13620, South Korea
| | - Kyung-Ho Yu
- Department of Neurology, Hallym University Sacred Heart Hospital, Hallym University College of Medicine, Anyang, 14068, Republic of Korea
| | - Hugo J Kuijf
- Image Sciences Institute, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands
| | - Nick A Weaver
- Department of Neurology and Neurosurgery, Utrecht Brain Center, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands
| | - J Matthijs Biesbroek
- Department of Neurology and Neurosurgery, Utrecht Brain Center, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands
- Department of Neurology, Diakonessenhuis Hospital, 3582 KE Utrecht, The Netherlands
| | - Jakub Kopal
- Department of Biomedical Engineering, Faculty of Medicine, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, Quebec H3A 2BA, Canada
- Mila—Quebec Artificial Intelligence Institute, Montreal, Quebec H2S 3H1, Canada
| | - Danilo Bzdok
- Department of Biomedical Engineering, Faculty of Medicine, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, Quebec H3A 2BA, Canada
- Mila—Quebec Artificial Intelligence Institute, Montreal, Quebec H2S 3H1, Canada
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30
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Hosseini EA, Schrimpf M, Zhang Y, Bowman S, Zaslavsky N, Fedorenko E. Artificial Neural Network Language Models Predict Human Brain Responses to Language Even After a Developmentally Realistic Amount of Training. NEUROBIOLOGY OF LANGUAGE (CAMBRIDGE, MASS.) 2024; 5:43-63. [PMID: 38645622 PMCID: PMC11025646 DOI: 10.1162/nol_a_00137] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 01/09/2024] [Indexed: 04/23/2024]
Abstract
Artificial neural networks have emerged as computationally plausible models of human language processing. A major criticism of these models is that the amount of training data they receive far exceeds that of humans during language learning. Here, we use two complementary approaches to ask how the models' ability to capture human fMRI responses to sentences is affected by the amount of training data. First, we evaluate GPT-2 models trained on 1 million, 10 million, 100 million, or 1 billion words against an fMRI benchmark. We consider the 100-million-word model to be developmentally plausible in terms of the amount of training data given that this amount is similar to what children are estimated to be exposed to during the first 10 years of life. Second, we test the performance of a GPT-2 model trained on a 9-billion-token dataset to reach state-of-the-art next-word prediction performance on the human benchmark at different stages during training. Across both approaches, we find that (i) the models trained on a developmentally plausible amount of data already achieve near-maximal performance in capturing fMRI responses to sentences. Further, (ii) lower perplexity-a measure of next-word prediction performance-is associated with stronger alignment with human data, suggesting that models that have received enough training to achieve sufficiently high next-word prediction performance also acquire representations of sentences that are predictive of human fMRI responses. In tandem, these findings establish that although some training is necessary for the models' predictive ability, a developmentally realistic amount of training (∼100 million words) may suffice.
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Affiliation(s)
- Eghbal A. Hosseini
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Martin Schrimpf
- The MIT Quest for Intelligence Initiative, Cambridge, MA, USA
- Swiss Federal Institute of Technology, Lausanne, Switzerland
| | - Yian Zhang
- Computer Science Department, Stanford University, Stanford, CA, USA
| | - Samuel Bowman
- Center for Data Science, New York University, New York, NY, USA
- Department of Linguistics, New York University, New York, NY, USA
- Department of Computer Science, New York University, New York, NY, USA
| | - Noga Zaslavsky
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- K. Lisa Yang Integrative Computational Neuroscience (ICoN) Center, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Language Science, University of California, Irvine, CA, USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- The MIT Quest for Intelligence Initiative, Cambridge, MA, USA
- Speech and Hearing Bioscience and Technology Program, Harvard University, Boston, MA, USA
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31
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Zhang Y, Taft M, Tang J, Li L. Neural correlates of semantic-driven syntactic parsing in sentence comprehension. Neuroimage 2024; 289:120543. [PMID: 38369168 DOI: 10.1016/j.neuroimage.2024.120543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 02/13/2024] [Accepted: 02/14/2024] [Indexed: 02/20/2024] Open
Abstract
For sentence comprehension, information carried by semantic relations between constituents must be combined with other information to decode the constituent structure of a sentence, due to atypical and noisy situations of language use. Neural correlates of decoding sentence structure by semantic information have remained largely unexplored. In this functional MRI study, we examine the neural basis of semantic-driven syntactic parsing during sentence reading and compare it with that of other types of syntactic parsing driven by word order and case marking. Chinese transitive sentences of various structures were investigated, differing in word order, case making, and agent-patient semantic relations (i.e., same vs. different in animacy). For the non-canonical unmarked sentences without usable case marking, a semantic-driven effect triggered by agent-patient ambiguity was found in the left inferior frontal gyrus opercularis (IFGoper) and left inferior parietal lobule, with the activity not being modulated by naturalness factors of the sentences. The comparison between each type of non-canonical sentences with canonical sentences revealed that the non-canonicity effect engaged the left posterior frontal and temporal regions, in line with previous studies. No extra neural activity was found responsive to case marking within the non-canonical sentences. A word order effect across all types of sentences was also found in the left IFGoper, suggesting a common neural substrate between different types of parsing. The semantic-driven effect was also observed for the non-canonical marked sentences but not for the canonical sentences, suggesting that semantic information is used in decoding sentence structure in addition to case marking. The current findings illustrate the neural correlates of syntactic parsing with semantics, and provide neural evidence of how semantics facilitates syntax together with other information.
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Affiliation(s)
- Yun Zhang
- Center for the Cognitive Science and Language, Beijing Language and Culture University, Beijing 100083, PR China
| | - Marcus Taft
- Center for the Cognitive Science and Language, Beijing Language and Culture University, Beijing 100083, PR China; School of Psychology, UNSW Sydney, Australia
| | - Jiaman Tang
- Center for the Cognitive Science and Language, Beijing Language and Culture University, Beijing 100083, PR China
| | - Le Li
- Center for the Cognitive Science and Language, Beijing Language and Culture University, Beijing 100083, PR China.
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32
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Kauf C, Tuckute G, Levy R, Andreas J, Fedorenko E. Lexical-Semantic Content, Not Syntactic Structure, Is the Main Contributor to ANN-Brain Similarity of fMRI Responses in the Language Network. NEUROBIOLOGY OF LANGUAGE (CAMBRIDGE, MASS.) 2024; 5:7-42. [PMID: 38645614 PMCID: PMC11025651 DOI: 10.1162/nol_a_00116] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 07/11/2023] [Indexed: 04/23/2024]
Abstract
Representations from artificial neural network (ANN) language models have been shown to predict human brain activity in the language network. To understand what aspects of linguistic stimuli contribute to ANN-to-brain similarity, we used an fMRI data set of responses to n = 627 naturalistic English sentences (Pereira et al., 2018) and systematically manipulated the stimuli for which ANN representations were extracted. In particular, we (i) perturbed sentences' word order, (ii) removed different subsets of words, or (iii) replaced sentences with other sentences of varying semantic similarity. We found that the lexical-semantic content of the sentence (largely carried by content words) rather than the sentence's syntactic form (conveyed via word order or function words) is primarily responsible for the ANN-to-brain similarity. In follow-up analyses, we found that perturbation manipulations that adversely affect brain predictivity also lead to more divergent representations in the ANN's embedding space and decrease the ANN's ability to predict upcoming tokens in those stimuli. Further, results are robust as to whether the mapping model is trained on intact or perturbed stimuli and whether the ANN sentence representations are conditioned on the same linguistic context that humans saw. The critical result-that lexical-semantic content is the main contributor to the similarity between ANN representations and neural ones-aligns with the idea that the goal of the human language system is to extract meaning from linguistic strings. Finally, this work highlights the strength of systematic experimental manipulations for evaluating how close we are to accurate and generalizable models of the human language network.
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Affiliation(s)
- Carina Kauf
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Greta Tuckute
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Roger Levy
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Jacob Andreas
- Computer Science & Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, USA
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33
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Billot A, Kiran S. Disentangling neuroplasticity mechanisms in post-stroke language recovery. BRAIN AND LANGUAGE 2024; 251:105381. [PMID: 38401381 PMCID: PMC10981555 DOI: 10.1016/j.bandl.2024.105381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 11/28/2023] [Accepted: 01/12/2024] [Indexed: 02/26/2024]
Abstract
A major objective in post-stroke aphasia research is to gain a deeper understanding of neuroplastic mechanisms that drive language recovery, with the ultimate goal of enhancing treatment outcomes. Subsequent to recent advances in neuroimaging techniques, we now have the ability to examine more closely how neural activity patterns change after a stroke. However, the way these neural activity changes relate to language impairments and language recovery is still debated. The aim of this review is to provide a theoretical framework to better investigate and interpret neuroplasticity mechanisms underlying language recovery in post-stroke aphasia. We detail two sets of neuroplasticity mechanisms observed at the synaptic level that may explain functional neuroimaging findings in post-stroke aphasia recovery at the network level: feedback-based homeostatic plasticity and associative Hebbian plasticity. In conjunction with these plasticity mechanisms, higher-order cognitive control processes dynamically modulate neural activity in other regions to meet communication demands, despite reduced neural resources. This work provides a network-level neurobiological framework for understanding neural changes observed in post-stroke aphasia and can be used to define guidelines for personalized treatment development.
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Affiliation(s)
- Anne Billot
- Center for Brain Recovery, Boston University, Boston, USA; Department of Psychology, Center for Brain Science, Harvard University, Cambridge, Massachusetts, USA; Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts, USA
| | - Swathi Kiran
- Center for Brain Recovery, Boston University, Boston, USA.
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34
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Dureux A, Zanini A, Everling S. Mapping of facial and vocal processing in common marmosets with ultra-high field fMRI. Commun Biol 2024; 7:317. [PMID: 38480875 PMCID: PMC10937914 DOI: 10.1038/s42003-024-06002-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 03/01/2024] [Indexed: 03/17/2024] Open
Abstract
Primate communication relies on multimodal cues, such as vision and audition, to facilitate the exchange of intentions, enable social interactions, avoid predators, and foster group cohesion during daily activities. Understanding the integration of facial and vocal signals is pivotal to comprehend social interaction. In this study, we acquire whole-brain ultra-high field (9.4 T) fMRI data from awake marmosets (Callithrix jacchus) to explore brain responses to unimodal and combined facial and vocal stimuli. Our findings reveal that the multisensory condition not only intensifies activations in the occipito-temporal face patches and auditory voice patches but also engages a more extensive network that includes additional parietal, prefrontal and cingulate areas, compared to the summed responses of the unimodal conditions. By uncovering the neural network underlying multisensory audiovisual integration in marmosets, this study highlights the efficiency and adaptability of the marmoset brain in processing facial and vocal social signals, providing significant insights into primate social communication.
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Affiliation(s)
- Audrey Dureux
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, N6A 5K8, Canada.
| | - Alessandro Zanini
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, N6A 5K8, Canada
| | - Stefan Everling
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, N6A 5K8, Canada
- Department of Physiology and Pharmacology, University of Western Ontario, London, ON, N6A 5K8, Canada
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35
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Tuckute G, Sathe A, Srikant S, Taliaferro M, Wang M, Schrimpf M, Kay K, Fedorenko E. Driving and suppressing the human language network using large language models. Nat Hum Behav 2024; 8:544-561. [PMID: 38172630 DOI: 10.1038/s41562-023-01783-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 11/10/2023] [Indexed: 01/05/2024]
Abstract
Transformer models such as GPT generate human-like language and are predictive of human brain responses to language. Here, using functional-MRI-measured brain responses to 1,000 diverse sentences, we first show that a GPT-based encoding model can predict the magnitude of the brain response associated with each sentence. We then use the model to identify new sentences that are predicted to drive or suppress responses in the human language network. We show that these model-selected novel sentences indeed strongly drive and suppress the activity of human language areas in new individuals. A systematic analysis of the model-selected sentences reveals that surprisal and well-formedness of linguistic input are key determinants of response strength in the language network. These results establish the ability of neural network models to not only mimic human language but also non-invasively control neural activity in higher-level cortical areas, such as the language network.
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Affiliation(s)
- Greta Tuckute
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
| | - Aalok Sathe
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Shashank Srikant
- Computer Science & Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA
- MIT-IBM Watson AI Lab, Cambridge, MA, USA
| | - Maya Taliaferro
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Mingye Wang
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Martin Schrimpf
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
- Quest for Intelligence, Massachusetts Institute of Technology, Cambridge, MA, USA
- Neuro-X Institute, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Kendrick Kay
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN, USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, USA.
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36
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Zang Z, Chi X, Luan M, Hu S, Zhou K, Liu J. Inter-individual, hemispheric and sex variability of brain activations during numerosity processing. Brain Struct Funct 2024; 229:459-475. [PMID: 38197958 PMCID: PMC10917853 DOI: 10.1007/s00429-023-02747-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Accepted: 12/04/2023] [Indexed: 01/11/2024]
Abstract
Numerosity perception is a fundamental and innate cognitive function shared by both humans and many animal species. Previous research has primarily focused on exploring the spatial and functional consistency of neural activations that were associated with the processing of numerosity information. However, the inter-individual variability of brain activations of numerosity perception remains unclear. In the present study, with a large-sample functional magnetic resonance imaging (fMRI) dataset (n = 460), we aimed to localize the functional regions related to numerosity perceptions and explore the inter-individual, hemispheric, and sex differences within these brain regions. Fifteen subject-specific activated regions, including the anterior intraparietal sulcus (aIPS), posterior intraparietal sulcus (pIPS), insula, inferior frontal gyrus (IFG), inferior temporal gyrus (ITG), premotor area (PM), middle occipital gyrus (MOG) and anterior cingulate cortex (ACC), were delineated in each individual and then used to create a functional probabilistic atlas to quantify individual variability in brain activations of numerosity processing. Though the activation percentages of most regions were higher than 60%, the intersections of most regions across individuals were considerably lower, falling below 50%, indicating substantial variations in brain activations related to numerosity processing among individuals. Furthermore, significant hemispheric and sex differences in activation location, extent, and magnitude were also found in these regions. Most activated regions in the right hemisphere had larger activation volumes and activation magnitudes, and were located more lateral and anterior than their counterparts in the left hemisphere. In addition, in most of these regions, males displayed stronger activations than females. Our findings demonstrate large inter-individual, hemispheric, and sex differences in brain activations related to numerosity processing, and our probabilistic atlas can serve as a robust functional and spatial reference for mapping the numerosity-related neural networks.
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Affiliation(s)
- Zhongyao Zang
- Beijing Key Laboratory of Applied Experimental Psychology, National Demonstration Center for Experimental Psychology Education (Beijing Normal University), Faculty of Psychology, Beijing Normal University, Beijing, 100875, China
| | - Xiaoyue Chi
- Beijing Key Laboratory of Applied Experimental Psychology, National Demonstration Center for Experimental Psychology Education (Beijing Normal University), Faculty of Psychology, Beijing Normal University, Beijing, 100875, China
| | - Mengkai Luan
- Department of Psychology, Shanghai University of Sport, 650 Qing Yuan Huan Road, Shanghai, 200438, People's Republic of China
| | - Siyuan Hu
- Beijing Key Laboratory of Applied Experimental Psychology, National Demonstration Center for Experimental Psychology Education (Beijing Normal University), Faculty of Psychology, Beijing Normal University, Beijing, 100875, China.
| | - Ke Zhou
- Beijing Key Laboratory of Applied Experimental Psychology, National Demonstration Center for Experimental Psychology Education (Beijing Normal University), Faculty of Psychology, Beijing Normal University, Beijing, 100875, China.
| | - Jia Liu
- Tsinghua Laboratory of Brain and Intelligence, Department of Psychology, Tsinghua University, Beijing, 100084, China
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37
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DeLuca V, Voits T, Ni J, Carter F, Rahman F, Mazaheri A, Krott A, Segaert K. Mapping individual aspects of bilingual experience to adaptations in brain structure. Cereb Cortex 2024; 34:bhae029. [PMID: 38365272 PMCID: PMC10872681 DOI: 10.1093/cercor/bhae029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 12/15/2023] [Accepted: 12/16/2023] [Indexed: 02/18/2024] Open
Abstract
Individual differences in using multiple languages are thought to differentially affect brain structure and function. The present study assessed the neuroanatomical predictions of an emerging theory, the Unifying the Bilingual Experience Trajectories framework, which provides the most comprehensive set of predictions of how individual differences in bilingual experiences lead to specific neural and cognitive adaptations. A total of 140 young adults with variable language experiences were scanned using magnetic resonance imaging and completed demographic questionnaires. Brain structure measures implicated in predictions of the Unifying the Bilingual Experience Trajectories model were extracted and regressed against the model's experiential factors. Consistent with the model's predictions, greater intensity and diversity of bilingual language use resulted in changes in gray matter volume in cortical regions involved in executive control (including inferior frontal gyrus, middle temporal gyrus, angular gyrus, and medial frontal gyrus), indicating adaptations toward handling increased executive control demands. Conversely, duration of bilingual engagement resulted in changes within white matter microstructure (bilateral superior longitudinal fasciculus) and increases in subcortical gray matter (left caudate), indicative of adaptations toward increased efficiency of control. Overall, this research enhances our understanding of how bilingual experiences influence brain structure and provides the first direct empirical evidence for the predictions made by the Unifying the Bilingual Experience Trajectories framework.
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Affiliation(s)
- Vincent DeLuca
- Department of Language and Culture, UiT The Arctic University of Norway, Tromso 9019, Norway
| | - Toms Voits
- Department of Language and Culture, UiT The Arctic University of Norway, Tromso 9019, Norway
- Department of Psychology, University of Gothenburg, Gothenburg 405 30, Sweden
| | - Jianzhang Ni
- School of Psychology and Centre for Human Brain Health, University of Birmingham, Birmingham, B15 2SA, United Kingdom
- Department of Psychiatry, The Chinese University of Hong Kong, Sha Tin, Hong Kong
| | - Felix Carter
- School of Psychological Science, University of Bristol, Bristol, BS8 1TU, United Kingdom
| | - Foyzul Rahman
- School of Psychology and Centre for Human Brain Health, University of Birmingham, Birmingham, B15 2SA, United Kingdom
- College of Psychology, Birmingham City University, Birmingham, B4 7BD, United Kingdom
| | - Ali Mazaheri
- School of Psychology and Centre for Human Brain Health, University of Birmingham, Birmingham, B15 2SA, United Kingdom
| | - Andrea Krott
- School of Psychology and Centre for Human Brain Health, University of Birmingham, Birmingham, B15 2SA, United Kingdom
| | - Katrien Segaert
- School of Psychology and Centre for Human Brain Health, University of Birmingham, Birmingham, B15 2SA, United Kingdom
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38
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Thothathiri M, Basnakova J, Lewis AG, Briand JM. Fractionating difficulty during sentence comprehension using functional neuroimaging. Cereb Cortex 2024; 34:bhae032. [PMID: 38314589 PMCID: PMC10847905 DOI: 10.1093/cercor/bhae032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 01/15/2024] [Accepted: 01/16/2024] [Indexed: 02/06/2024] Open
Abstract
Sentence comprehension is highly practiced and largely automatic, but this belies the complexity of the underlying processes. We used functional neuroimaging to investigate garden-path sentences that cause difficulty during comprehension, in order to unpack the different processes used to support sentence interpretation. By investigating garden-path and other types of sentences within the same individuals, we functionally profiled different regions within the temporal and frontal cortices in the left hemisphere. The results revealed that different aspects of comprehension difficulty are handled by left posterior temporal, left anterior temporal, ventral left frontal, and dorsal left frontal cortices. The functional profiles of these regions likely lie along a spectrum of specificity to generality, including language-specific processing of linguistic representations, more general conflict resolution processes operating over linguistic representations, and processes for handling difficulty in general. These findings suggest that difficulty is not unitary and that there is a role for a variety of linguistic and non-linguistic processes in supporting comprehension.
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Affiliation(s)
- Malathi Thothathiri
- Department of Speech, Language and Hearing Sciences, The George Washington University, Washington, DC, United States
| | - Jana Basnakova
- Radboud University, Donders Institute for Brain, Cognition, and Behaviour, Nijmegen, The Netherlands
| | - Ashley G Lewis
- Radboud University, Donders Institute for Brain, Cognition, and Behaviour, Nijmegen, The Netherlands
- Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands
| | - Josephine M Briand
- Department of Speech, Language and Hearing Sciences, The George Washington University, Washington, DC, United States
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39
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Malik-Moraleda S, Jouravlev O, Taliaferro M, Mineroff Z, Cucu T, Mahowald K, Blank IA, Fedorenko E. Functional characterization of the language network of polyglots and hyperpolyglots with precision fMRI. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.01.19.524657. [PMID: 36711949 PMCID: PMC9882290 DOI: 10.1101/2023.01.19.524657] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
How do polyglots-individuals who speak five or more languages-process their languages, and what can this population tell us about the language system? Using fMRI, we identified the language network in each of 34 polyglots (including 16 hyperpolyglots with knowledge of 10+ languages) and examined its response to the native language, non-native languages of varying proficiency, and unfamiliar languages. All language conditions engaged all areas of the language network relative to a control condition. Languages that participants rated as higher-proficiency elicited stronger responses, except for the native language, which elicited a similar or lower response than a non-native language of similar proficiency. Furthermore, unfamiliar languages that were typologically related to the participants' high-to-moderate-proficiency languages elicited a stronger response than unfamiliar unrelated languages. The results suggest that the language network's response magnitude scales with the degree of engagement of linguistic computations (e.g., related to lexical access and syntactic-structure building). We also replicated a prior finding of weaker responses to native language in polyglots than non-polyglot bilinguals. These results contribute to our understanding of how multiple languages co-exist within a single brain and provide new evidence that the language network responds more strongly to stimuli that more fully engage linguistic computations.
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Affiliation(s)
- Saima Malik-Moraleda
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Boston, MA 02114
| | - Olessia Jouravlev
- Department of Cognitive Science, Carleton University, Ottawa, Canada, K1S 5B6
| | - Maya Taliaferro
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
| | | | - Theodore Cucu
- Department of Psychology, Carnegie Mellon University, Pittsburgh, PA 15289
| | - Kyle Mahowald
- Department of Linguistics, The University of Texas at Austin, Austin, TX 78712
| | - Idan A. Blank
- Department of Psychology, University of California Los Angeles, CA 90095
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
- Program in Speech and Hearing Bioscience and Technology, Harvard University, Boston, MA 02114
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40
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Lee JJ, Scott TL, Perrachione TK. Efficient functional localization of language regions in the brain. Neuroimage 2024; 285:120489. [PMID: 38065277 PMCID: PMC10999251 DOI: 10.1016/j.neuroimage.2023.120489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 11/25/2023] [Accepted: 12/05/2023] [Indexed: 12/17/2023] Open
Abstract
Important recent advances in the cognitive neuroscience of language have been made using functional localizers to demarcate language-selective regions in individual brains. Although single-subject localizers offer insights that are unavailable in classic group analyses, they require additional scan time that imposes costs on investigators and participants. In particular, the unique practical challenges of scanning children and other special populations has led to less adoption of localizers for neuroimaging research with these theoretically and clinically important groups. Here, we examined how measurements of the spatial extent and functional response profiles of language regions are affected by the duration of an auditory language localizer. We compared how parametrically smaller amounts of data collected from one scanning session affected (i) consistency of group-level whole-brain parcellations, (ii) functional selectivity of subject-level activation in individually defined functional regions of interest (fROIs), (iii) sensitivity and specificity of subject-level whole-brain and fROI activation, and (iv) test-retest reliability of subject-level whole-brain and fROI activation. For many of these metrics, the localizer duration could be reduced by 50-75% while preserving the stability and reliability of both the spatial extent and functional response profiles of language areas. These results indicate that, for most measures relevant to cognitive neuroimaging studies, the brain's language network can be localized just as effectively with 3.5 min of scan time as it can with 12 min. Minimizing the time required to reliably localize the brain's language network allows more effective localizer use in situations where each minute of scan time is particularly precious.
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Affiliation(s)
- Jayden J Lee
- Department of Speech, Language, and Hearing Sciences, Boston University, 635 Commonwealth Ave., Boston, MA 02215, United States
| | - Terri L Scott
- Department of Neurological Surgery, University of California - San Francisco, San Francisco, CA, United States
| | - Tyler K Perrachione
- Department of Speech, Language, and Hearing Sciences, Boston University, 635 Commonwealth Ave., Boston, MA 02215, United States.
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41
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Tuckute G, Sathe A, Srikant S, Taliaferro M, Wang M, Schrimpf M, Kay K, Fedorenko E. Driving and suppressing the human language network using large language models. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.16.537080. [PMID: 37090673 PMCID: PMC10120732 DOI: 10.1101/2023.04.16.537080] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2023]
Abstract
Transformer models such as GPT generate human-like language and are highly predictive of human brain responses to language. Here, using fMRI-measured brain responses to 1,000 diverse sentences, we first show that a GPT-based encoding model can predict the magnitude of brain response associated with each sentence. Then, we use the model to identify new sentences that are predicted to drive or suppress responses in the human language network. We show that these model-selected novel sentences indeed strongly drive and suppress activity of human language areas in new individuals. A systematic analysis of the model-selected sentences reveals that surprisal and well-formedness of linguistic input are key determinants of response strength in the language network. These results establish the ability of neural network models to not only mimic human language but also noninvasively control neural activity in higher-level cortical areas, like the language network.
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Affiliation(s)
- Greta Tuckute
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Aalok Sathe
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Shashank Srikant
- Computer Science & Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- MIT-IBM Watson AI Lab, Cambridge, MA 02142, USA
| | - Maya Taliaferro
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Mingye Wang
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - Martin Schrimpf
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- Quest for Intelligence, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- Neuro-X Institute, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Kendrick Kay
- Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN 55455 USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
- The Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA 02138 USA
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42
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Li J, Tuckute G, Fedorenko E, Edlow BL, Fischl B, Dalca AV. Joint cortical registration of geometry and function using semi-supervised learning. ARXIV 2023:arXiv:2303.01592v4. [PMID: 37744470 PMCID: PMC10516111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
Brain surface-based image registration, an important component of brain image analysis, establishes spatial correspondence between cortical surfaces. Existing iterative and learning-based approaches focus on accurate registration of folding patterns of the cerebral cortex, and assume that geometry predicts function and thus functional areas will also be well aligned. However, structure/functional variability of anatomically corresponding areas across subjects has been widely reported. In this work, we introduce a learning-based cortical registration framework, JOSA, which jointly aligns folding patterns and functional maps while simultaneously learning an optimal atlas. We demonstrate that JOSA can substantially improve registration performance in both anatomical and functional domains over existing methods. By employing a semi-supervised training strategy, the proposed framework obviates the need for functional data during inference, enabling its use in broad neuroscientific domains where functional data may not be observed. The source code of JOSA will be released to the public at https://voxelmorph.net.
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Affiliation(s)
- Jian Li
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School
- Center for Neurotechnology and Neurorecovery, Department of Neurology, Massachusetts General Hospital and Harvard Medical School
| | - Greta Tuckute
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology
- McGovern Institute for Brain Research, Massachusetts Institute of Technology
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology
- McGovern Institute for Brain Research, Massachusetts Institute of Technology
- Program in Speech Hearing Bioscience and Technology, Harvard University
| | - Brian L Edlow
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School
- Center for Neurotechnology and Neurorecovery, Department of Neurology, Massachusetts General Hospital and Harvard Medical School
| | - Bruce Fischl
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology
- Harvard-MIT Program in Health Sciences and Technology
| | - Adrian V Dalca
- A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital and Harvard Medical School
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology
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43
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Hartwigsen G, Lim JS, Bae HJ, Yu KH, Kuijf HJ, Weaver NA, Biesbroek JM, Kopal J, Bzdok D. Bayesian modeling disentangles language versus executive control disruption in stroke. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.06.552147. [PMID: 37609325 PMCID: PMC10441359 DOI: 10.1101/2023.08.06.552147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Stroke is the leading cause of long-term disability worldwide. Incurred brain damage disrupts cognition, often with persisting deficits in language and executive capacities. Despite their clinical relevance, the commonalities, and differences of language versus executive control impairments remain under-specified. We tailored a Bayesian hierarchical modeling solution in a largest-of-its-kind cohort (1080 stroke patients) to deconvolve language and executive control in the brain substrates of stroke insults. Four cognitive factors distinguished left- and right-hemispheric contributions to ischemic tissue lesion. One factor delineated language and general cognitive performance and was mainly associated with damage to left-hemispheric brain regions in the frontal and temporal cortex. A factor for executive control summarized control and visual-constructional abilities. This factor was strongly related to right-hemispheric brain damage of posterior regions in the occipital cortex. The interplay of language and executive control was reflected in two factors: executive speech functions and verbal memory. Impairments on both were mainly linked to left-hemispheric lesions. These findings shed light onto the causal implications of hemispheric specialization for cognition; and make steps towards subgroup-specific treatment protocols after stroke.
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Yang W, Zhang X, Ma B, Wang Y, Wu Y, Yan J, Liu Y, Zhang C, Wan J, Wang Y, Huang M, Li Y, Zhao D. An open dataset for intelligent recognition and classification of abnormal condition in longwall mining. Sci Data 2023; 10:416. [PMID: 37369715 PMCID: PMC10300123 DOI: 10.1038/s41597-023-02322-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 06/20/2023] [Indexed: 06/29/2023] Open
Abstract
The underground coal mine production of the fully mechanized mining face exists many problems, such as poor operating environment, high accident rate and so on. Recently, the intelligent autonomous coal mining is gradually replacing the traditional mining process. The artificial intelligence technology is an active research area and is expect to identify and warn the underground abnormal conditions for intelligent longwall mining. It is inseparable from the construction of datasets, but the downhole dataset is still blank at present. This work develops an image dataset of underground longwall mining face (DsLMF+), which consists of 138004 images with annotation 6 categories of mine personnel, hydraulic support guard plate, large coal, towline, miners' behaviour and mine safety helmet. All the labels of dataset are publicly available in YOLO format and COCO format. The availability and accuracy of the datasets were reviewed by experts in coal mine field. The dataset is open access and aims to support further research and advancement of the intelligent identification and classification of abnormal conditions for underground mining.
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Affiliation(s)
- Wenjuan Yang
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
- Shaanxi Key Laboratory of Mine Electromechanical Equipment Intelligent Detection and Control, No.58, Yanta Road, Xi'an, 710054, China
| | - Xuhui Zhang
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China.
- Shaanxi Key Laboratory of Mine Electromechanical Equipment Intelligent Detection and Control, No.58, Yanta Road, Xi'an, 710054, China.
| | - Bing Ma
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Yanqun Wang
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Yujia Wu
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Jianxing Yan
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Yongwei Liu
- MARCO automatic control system development Co.,LTD, No.20, Fenghui South Road, Xi'an, 710054, China
| | - Chao Zhang
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Jicheng Wan
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Yue Wang
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Mengyao Huang
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Yuyang Li
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
| | - Dian Zhao
- School of Mechanical Engineering, Xi'an University of Science and Technology, No.58, Mid-Yanta Road, Xi'an, 710054, China
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Chen X, Affourtit J, Ryskin R, Regev TI, Norman-Haignere S, Jouravlev O, Malik-Moraleda S, Kean H, Varley R, Fedorenko E. The human language system, including its inferior frontal component in "Broca's area," does not support music perception. Cereb Cortex 2023; 33:7904-7929. [PMID: 37005063 PMCID: PMC10505454 DOI: 10.1093/cercor/bhad087] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 01/02/2023] [Accepted: 01/03/2023] [Indexed: 04/04/2023] Open
Abstract
Language and music are two human-unique capacities whose relationship remains debated. Some have argued for overlap in processing mechanisms, especially for structure processing. Such claims often concern the inferior frontal component of the language system located within "Broca's area." However, others have failed to find overlap. Using a robust individual-subject fMRI approach, we examined the responses of language brain regions to music stimuli, and probed the musical abilities of individuals with severe aphasia. Across 4 experiments, we obtained a clear answer: music perception does not engage the language system, and judgments about music structure are possible even in the presence of severe damage to the language network. In particular, the language regions' responses to music are generally low, often below the fixation baseline, and never exceed responses elicited by nonmusic auditory conditions, like animal sounds. Furthermore, the language regions are not sensitive to music structure: they show low responses to both intact and structure-scrambled music, and to melodies with vs. without structural violations. Finally, in line with past patient investigations, individuals with aphasia, who cannot judge sentence grammaticality, perform well on melody well-formedness judgments. Thus, the mechanisms that process structure in language do not appear to process music, including music syntax.
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Affiliation(s)
- Xuanyi Chen
- Department of Cognitive Sciences, Rice University, TX 77005, United States
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
| | - Josef Affourtit
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
| | - Rachel Ryskin
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Cognitive & Information Sciences, University of California, Merced, Merced, CA 95343, United States
| | - Tamar I Regev
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
| | - Samuel Norman-Haignere
- Department of Biostatistics & Computational Biology, University of Rochester Medical Center, Rochester, NY, United States
- Department of Neuroscience, University of Rochester Medical Center, Rochester, NY, United States
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, United States
- Department of Brain and Cognitive Sciences, University of Rochester, Rochester, NY, United States
| | - Olessia Jouravlev
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- Department of Cognitive Science, Carleton University, Ottawa, ON, Canada
| | - Saima Malik-Moraleda
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- The Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA 02138, United States
| | - Hope Kean
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
| | - Rosemary Varley
- Psychology & Language Sciences, UCL, London, WCN1 1PF, United Kingdom
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, United States
- McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, United States
- The Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA 02138, United States
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46
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Jafari A, Dureux A, Zanini A, Menon RS, Gilbert KM, Everling S. A vocalization-processing network in marmosets. Cell Rep 2023; 42:112526. [PMID: 37195863 DOI: 10.1016/j.celrep.2023.112526] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 03/31/2023] [Accepted: 05/02/2023] [Indexed: 05/19/2023] Open
Abstract
Vocalizations play an important role in the daily life of primates and likely form the basis of human language. Functional imaging studies have demonstrated that listening to voices activates a fronto-temporal voice perception network in human participants. Here, we acquired whole-brain ultrahigh-field (9.4 T) fMRI in awake marmosets (Callithrix jacchus) and demonstrate that these small, highly vocal New World primates possess a similar fronto-temporal network, including subcortical regions, that is activated by the presentation of conspecific vocalizations. The findings suggest that the human voice perception network has evolved from an ancestral vocalization-processing network that predates the separation of New and Old World primates.
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Affiliation(s)
- Azadeh Jafari
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, Canada
| | - Audrey Dureux
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, Canada
| | - Alessandro Zanini
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, Canada
| | - Ravi S Menon
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, Canada
| | - Kyle M Gilbert
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, Canada
| | - Stefan Everling
- Centre for Functional and Metabolic Mapping, Robarts Research Institute, University of Western Ontario, London, ON, Canada; Department of Physiology and Pharmacology, University of Western Ontario, London, ON, Canada.
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47
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Hauptman M, Blank I, Fedorenko E. Non-literal language processing is jointly supported by the language and theory of mind networks: Evidence from a novel meta-analytic fMRI approach. Cortex 2023; 162:96-114. [PMID: 37023480 PMCID: PMC10210011 DOI: 10.1016/j.cortex.2023.01.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 11/08/2022] [Accepted: 01/11/2023] [Indexed: 03/12/2023]
Abstract
Going beyond the literal meaning of language is key to communicative success. However, the mechanisms that support non-literal inferences remain debated. Using a novel meta-analytic approach, we evaluate the contribution of linguistic, social-cognitive, and executive mechanisms to non-literal interpretation. We identified 74 fMRI experiments (n = 1,430 participants) from 2001 to 2021 that contrasted non-literal language comprehension with a literal control condition, spanning ten phenomena (e.g., metaphor, irony, indirect speech). Applying the activation likelihood estimation approach to the 825 activation peaks yielded six left-lateralized clusters. We then evaluated the locations of both the individual-study peaks and the clusters against probabilistic functional atlases (cf. anatomical locations, as is typically done) for three candidate brain networks-the language-selective network (Fedorenko, Behr, & Kanwisher, 2011), which supports language processing, the Theory of Mind (ToM) network (Saxe & Kanwisher, 2003), which supports social inferences, and the domain-general Multiple-Demand (MD) network (Duncan, 2010), which supports executive control. These atlases were created by overlaying individual activation maps of participants who performed robust and extensively validated 'localizer' tasks that selectively target each network in question (n = 806 for language; n = 198 for ToM; n = 691 for MD). We found that both the individual-study peaks and the ALE clusters fell primarily within the language network and the ToM network. These results suggest that non-literal processing is supported by both i) mechanisms that process literal linguistic meaning, and ii) mechanisms that support general social inference. They thus undermine a strong divide between literal and non-literal aspects of language and challenge the claim that non-literal processing requires additional executive resources.
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Affiliation(s)
- Miriam Hauptman
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, USA; McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, USA; Department of Psychological & Brain Sciences, Johns Hopkins University, Baltimore, MD 21218, USA.
| | - Idan Blank
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, USA; McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, USA; Department of Psychology, UCLA, Los Angeles, CA 90095, USA; Department of Linguistics, UCLA, Los Angeles, CA 90095, USA
| | - Evelina Fedorenko
- Department of Brain and Cognitive Sciences, MIT, Cambridge, MA 02139, USA; McGovern Institute for Brain Research, MIT, Cambridge, MA 02139, USA; Program in Speech and Hearing in Bioscience and Technology, Harvard University, Boston, MA 02114, USA.
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48
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Yuan B, Xie H, Wang Z, Xu Y, Zhang H, Liu J, Chen L, Li C, Tan S, Lin Z, Hu X, Gu T, Lu J, Liu D, Wu J. The domain-separation language network dynamics in resting state support its flexible functional segregation and integration during language and speech processing. Neuroimage 2023; 274:120132. [PMID: 37105337 DOI: 10.1016/j.neuroimage.2023.120132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 04/05/2023] [Accepted: 04/21/2023] [Indexed: 04/29/2023] Open
Abstract
Modern linguistic theories and network science propose that language and speech processing are organized into hierarchical, segregated large-scale subnetworks, with a core of dorsal (phonological) stream and ventral (semantic) stream. The two streams are asymmetrically recruited in receptive and expressive language or speech tasks, which showed flexible functional segregation and integration. We hypothesized that the functional segregation of the two streams was supported by the underlying network segregation. A dynamic conditional correlation approach was employed to construct framewise time-varying language networks and k-means clustering was employed to investigate the temporal-reoccurring patterns. We found that the framewise language network dynamics in resting state were robustly clustered into four states, which dynamically reconfigured following a domain-separation manner. Spatially, the hub distributions of the first three states highly resembled the neurobiology of speech perception and lexical-phonological processing, speech production, and semantic processing, respectively. The fourth state was characterized by the weakest functional connectivity and was regarded as a baseline state. Temporally, the first three states appeared exclusively in limited time bins (∼15%), and most of the time (> 55%), state 4 was dominant. Machine learning-based dFC-linguistics prediction analyses showed that dFCs of the four states significantly predicted individual linguistic performance. These findings suggest a domain-separation manner of language network dynamics in resting state, which forms a dynamic "meta-network" framework to support flexible functional segregation and integration during language and speech processing.
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Affiliation(s)
- Binke Yuan
- Philosophy and Social Science Laboratory of Reading and Development in Children and Adolescents (South China Normal University), Ministry of Education, China; Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China.
| | - Hui Xie
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China; Department of Psychology, The University of Hong Kong, Hong Kong, China
| | - Zhihao Wang
- CNRS - Centre d'Economie de la Sorbonne, Panthéon-Sorbonne University, France
| | - Yangwen Xu
- Center for Mind/Brain Sciences (CIMeC), University of Trento, Trento 38123, Italy
| | - Hanqing Zhang
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Jiaxuan Liu
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Lifeng Chen
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Chaoqun Li
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Shiyao Tan
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Zonghui Lin
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Xin Hu
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Tianyi Gu
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, China
| | - Junfeng Lu
- Glioma Surgery Division, Neurologic Surgery Department, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai, China; Brain Function Laboratory, Neurosurgical Institute of Fudan University, Shanghai, China; Shanghai Key Laboratory of Brain Function Restoration and Neural Regeneration, Shanghai, China
| | - Dongqiang Liu
- Research Center of Brain and Cognitive Neuroscience, Liaoning Normal University, Dalian, China; Key Laboratory of Brain and Cognitive Neuroscience, Liaoning Province, Dalian, PR China.
| | - Jinsong Wu
- Glioma Surgery Division, Neurologic Surgery Department, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai, China; Brain Function Laboratory, Neurosurgical Institute of Fudan University, Shanghai, China; Shanghai Key Laboratory of Brain Function Restoration and Neural Regeneration, Shanghai, China
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49
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Bruffaerts R, Pongos A, Shain C, Lipkin B, Siegelman M, Wens V, Sjøgård M, Pantazis D, Blank I, Goldman S, De Tiège X, Fedorenko E. Functional identification of language-responsive channels in individual participants in MEG investigations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.23.533424. [PMID: 36993378 PMCID: PMC10055362 DOI: 10.1101/2023.03.23.533424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Making meaningful inferences about the functional architecture of the language system requires the ability to refer to the same neural units across individuals and studies. Traditional brain imaging approaches align and average brains together in a common space. However, lateral frontal and temporal cortex, where the language system resides, is characterized by high structural and functional inter-individual variability. This variability reduces the sensitivity and functional resolution of group-averaging analyses. This problem is compounded by the fact that language areas often lay in close proximity to regions of other large-scale networks with different functional profiles. A solution inspired by other fields of cognitive neuroscience (e.g., vision) is to identify language areas functionally in each individual brain using a 'localizer' task (e.g., a language comprehension task). This approach has proven productive in fMRI, yielding a number of discoveries about the language system, and has been successfully extended to intracranial recording investigations. Here, we apply this approach to MEG. Across two experiments (one in Dutch speakers, n=19; one in English speakers, n=23), we examined neural responses to the processing of sentences and a control condition (nonword sequences). We demonstrated that the neural response to language is spatially consistent at the individual level. The language-responsive sensors of interest were, as expected, less responsive to the nonwords condition. Clear inter-individual differences were present in the topography of the neural response to language, leading to greater sensitivity when the data were analyzed at the individual level compared to the group level. Thus, as in fMRI, functional localization yields benefits in MEG and thus opens the door to probing fine-grained distinctions in space and time in future MEG investigations of language processing.
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Affiliation(s)
- Rose Bruffaerts
- Computational Neurology, Experimental Neurobiology Unit (ENU), Department of Biomedical Sciences, University of Antwerp, Belgium; Department of Neurosciences, KU Leuven, Belgium
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Alvince Pongos
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Bioengineering, UC Berkeley-UCSF, San Francisco, CA, USA
| | - Cory Shain
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Benjamin Lipkin
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Matthew Siegelman
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Psychology, Columbia University, New York, NY, USA
| | - Vincent Wens
- Department of Functional Neuroimaging, Service of Nuclear Medicine, CUB Hôpital Erasme, Université libre de Bruxelles, Brussels, Belgium
| | - Martin Sjøgård
- Department of Functional Neuroimaging, Service of Nuclear Medicine, CUB Hôpital Erasme, Université libre de Bruxelles, Brussels, Belgium
| | - Dimitrios Pantazis
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Idan Blank
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Psychology, University of California Los Angeles, CA, USA
| | - Serge Goldman
- Department of Functional Neuroimaging, Service of Nuclear Medicine, CUB Hôpital Erasme, Université libre de Bruxelles, Brussels, Belgium
| | - Xavier De Tiège
- Department of Functional Neuroimaging, Service of Nuclear Medicine, CUB Hôpital Erasme, Université libre de Bruxelles, Brussels, Belgium
| | - Evelina Fedorenko
- Brain and Cognitive Sciences Department, Massachusetts Institute of Technology, Cambridge, MA, USA
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
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50
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Seghier ML. The elusive metric of lesion load. Brain Struct Funct 2023; 228:703-716. [PMID: 36947181 DOI: 10.1007/s00429-023-02630-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 03/15/2023] [Indexed: 03/23/2023]
Abstract
One of the widely used metrics in lesion-symptom mapping is lesion load that codes the amount of damage to a given brain region of interest. Lesion load aims to reduce the complex 3D lesion information into a feature that can reflect both site of damage, defined by the location of the region of interest, and size of damage within that region of interest. Basically, the process of estimation of lesion load converts a voxel-based lesion map into a region-based lesion map, with regions defined as atlas-based or data-driven spatial patterns. Here, after examining current definitions of lesion load, four methodological issues are discussed: (1) lesion load is agnostic to the location of damage within the region of interest, and it disregards damage outside the region of interest, (2) lesion load estimates are prone to errors introduced by the uncertainty in lesion delineation, spatial warping of the lesion/region, and binarization of the lesion/region, (3) lesion load calculation depends on brain parcellation selection, and (4) lesion load does not necessarily reflect a white matter disconnection. Overall, lesion load, when calculated in a robust way, can serve as a clinically-useful feature for explaining and predicting post-stroke outcome and recovery.
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Affiliation(s)
- Mohamed L Seghier
- Department of Biomedical Engineering, Khalifa University of Science and Technology, Abu Dhabi, UAE.
- Healthcare Engineering Innovation Center (HEIC), Khalifa University of Science and Technology, Abu Dhabi, UAE.
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