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For: Fox SJ, Lachmann M, Tec M, Pasco R, Woody S, Du Z, Wang X, Ingle TA, Javan E, Dahan M, Gaither K, Escott ME, Adler SI, Johnston SC, Scott JG, Meyers LA. Real-time pandemic surveillance using hospital admissions and mobility data. Proc Natl Acad Sci U S A 2022;119:e2111870119. [PMID: 35105729 DOI: 10.1073/pnas.2111870119] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/04/2022] [Indexed: 12/24/2022]  Open
Number Cited by Other Article(s)
1
Hao B, Hu Y, Adams WG, Assoumou SA, Hsu HE, Bhadelia N, Paschalidis IC. A GPT-based EHR modeling system for unsupervised novel disease detection. J Biomed Inform 2024;157:104706. [PMID: 39121932 DOI: 10.1016/j.jbi.2024.104706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 07/17/2024] [Accepted: 08/06/2024] [Indexed: 08/12/2024]
2
Gerlee P, Thoreén H, Joöud AS, Lundh T, Spreco A, Nordlund A, Brezicka T, Britton T, Kjellberg M, Kaöllberg H, Tegnell A, Brouwers L, Timpka T. Evaluation and communication of pandemic scenarios. Lancet Digit Health 2024;6:e543-e544. [PMID: 39059885 DOI: 10.1016/s2589-7500(24)00144-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 04/15/2024] [Accepted: 06/25/2024] [Indexed: 07/28/2024]
3
Mathis SM, Webber AE, León TM, Murray EL, Sun M, White LA, Brooks LC, Green A, Hu AJ, Rosenfeld R, Shemetov D, Tibshirani RJ, McDonald DJ, Kandula S, Pei S, Yaari R, Yamana TK, Shaman J, Agarwal P, Balusu S, Gururajan G, Kamarthi H, Prakash BA, Raman R, Zhao Z, Rodríguez A, Meiyappan A, Omar S, Baccam P, Gurung HL, Suchoski BT, Stage SA, Ajelli M, Kummer AG, Litvinova M, Ventura PC, Wadsworth S, Niemi J, Carcelen E, Hill AL, Loo SL, McKee CD, Sato K, Smith C, Truelove S, Jung SM, Lemaitre JC, Lessler J, McAndrew T, Ye W, Bosse N, Hlavacek WS, Lin YT, Mallela A, Gibson GC, Chen Y, Lamm SM, Lee J, Posner RG, Perofsky AC, Viboud C, Clemente L, Lu F, Meyer AG, Santillana M, Chinazzi M, Davis JT, Mu K, Pastore Y Piontti A, Vespignani A, Xiong X, Ben-Nun M, Riley P, Turtle J, Hulme-Lowe C, Jessa S, Nagraj VP, Turner SD, Williams D, Basu A, Drake JM, Fox SJ, Suez E, Cojocaru MG, Thommes EW, Cramer EY, Gerding A, Stark A, Ray EL, Reich NG, Shandross L, Wattanachit N, Wang Y, Zorn MW, Aawar MA, Srivastava A, Meyers LA, Adiga A, Hurt B, Kaur G, Lewis BL, Marathe M, Venkatramanan S, Butler P, Farabow A, Ramakrishnan N, Muralidhar N, Reed C, Biggerstaff M, Borchering RK. Title evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations. Nat Commun 2024;15:6289. [PMID: 39060259 PMCID: PMC11282251 DOI: 10.1038/s41467-024-50601-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 07/16/2024] [Indexed: 07/28/2024]  Open
4
Brosky H, Prasek SM, Innes GK, Pepper IL, Miranda J, Brierley PE, Slinski SL, Polashenski L, Betancourt WQ, Gronbach K, Gomez D, Neupane R, Johnson J, Weiss J, Yaglom HD, Engelthaler DM, Hepp CM, Crank K, Gerrity D, Stewart JR, Schmitz BW. A framework for integrating wastewater-based epidemiology and public health. Front Public Health 2024;12:1418681. [PMID: 39131575 PMCID: PMC11312382 DOI: 10.3389/fpubh.2024.1418681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Accepted: 06/24/2024] [Indexed: 08/13/2024]  Open
5
Lipsitch M, Bassett MT, Brownstein JS, Elliott P, Eyre D, Grabowski MK, Hay JA, Johansson MA, Kissler SM, Larremore DB, Layden JE, Lessler J, Lynfield R, MacCannell D, Madoff LC, Metcalf CJE, Meyers LA, Ofori SK, Quinn C, Bento AI, Reich NG, Riley S, Rosenfeld R, Samore MH, Sampath R, Slayton RB, Swerdlow DL, Truelove S, Varma JK, Grad YH. Infectious disease surveillance needs for the United States: lessons from Covid-19. Front Public Health 2024;12:1408193. [PMID: 39076420 PMCID: PMC11285106 DOI: 10.3389/fpubh.2024.1408193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 06/18/2024] [Indexed: 07/31/2024]  Open
6
Sudhakar T, Bhansali A, Walkington J, Puelz D. The disutility of compartmental model forecasts during the COVID-19 pandemic. FRONTIERS IN EPIDEMIOLOGY 2024;4:1389617. [PMID: 38966521 PMCID: PMC11222405 DOI: 10.3389/fepid.2024.1389617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 05/27/2024] [Indexed: 07/06/2024]
7
Porebski P, Venkatramanan S, Adiga A, Klahn B, Hurt B, Wilson ML, Chen J, Vullikanti A, Marathe M, Lewis B. Data-driven mechanistic framework with stratified immunity and effective transmissibility for COVID-19 scenario projections. Epidemics 2024;47:100761. [PMID: 38555667 PMCID: PMC11205267 DOI: 10.1016/j.epidem.2024.100761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 01/30/2024] [Accepted: 03/07/2024] [Indexed: 04/02/2024]  Open
8
Pasco R, Fox SJ, Lachmann M, Meyers LA. Effectiveness of interventions to reduce COVID-19 transmission in schools. Epidemics 2024;47:100762. [PMID: 38489849 DOI: 10.1016/j.epidem.2024.100762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 03/05/2024] [Accepted: 03/08/2024] [Indexed: 03/17/2024]  Open
9
Borchering RK, Biggerstaff M, Brammer L, Budd A, Garg S, Fry AM, Iuliano AD, Reed C. Responding to the Return of Influenza in the United States by Applying Centers for Disease Control and Prevention Surveillance, Analysis, and Modeling to Inform Understanding of Seasonal Influenza. JMIR Public Health Surveill 2024;10:e54340. [PMID: 38587882 PMCID: PMC11036179 DOI: 10.2196/54340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 02/12/2024] [Accepted: 02/13/2024] [Indexed: 04/09/2024]  Open
10
Mathis SM, Webber AE, León TM, Murray EL, Sun M, White LA, Brooks LC, Green A, Hu AJ, McDonald DJ, Rosenfeld R, Shemetov D, Tibshirani RJ, Kandula S, Pei S, Shaman J, Yaari R, Yamana TK, Agarwal P, Balusu S, Gururajan G, Kamarthi H, Prakash BA, Raman R, Rodríguez A, Zhao Z, Meiyappan A, Omar S, Baccam P, Gurung HL, Stage SA, Suchoski BT, Ajelli M, Kummer AG, Litvinova M, Ventura PC, Wadsworth S, Niemi J, Carcelen E, Hill AL, Jung SM, Lemaitre JC, Lessler J, Loo SL, McKee CD, Sato K, Smith C, Truelove S, McAndrew T, Ye W, Bosse N, Hlavacek WS, Lin YT, Mallela A, Chen Y, Lamm SM, Lee J, Posner RG, Perofsky AC, Viboud C, Clemente L, Lu F, Meyer AG, Santillana M, Chinazzi M, Davis JT, Mu K, Piontti APY, Vespignani A, Xiong X, Ben-Nun M, Riley P, Turtle J, Hulme-Lowe C, Jessa S, Nagraj VP, Turner SD, Williams D, Basu A, Drake JM, Fox SJ, Gibson GC, Suez E, Thommes EW, Cojocaru MG, Cramer EY, Gerding A, Stark A, Ray EL, Reich NG, Shandross L, Wattanachit N, Wang Y, Zorn MW, Al Aawar M, Srivastava A, Meyers LA, Adiga A, Hurt B, Kaur G, Lewis BL, Marathe M, Venkatramanan S, Butler P, Farabow A, Muralidhar N, Ramakrishnan N, Reed C, Biggerstaff M, Borchering RK. Evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.12.08.23299726. [PMID: 38168429 PMCID: PMC10760285 DOI: 10.1101/2023.12.08.23299726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
11
Reich NG, Wang Y, Burns M, Ergas R, Cramer EY, Ray EL. Assessing the utility of COVID-19 case reports as a leading indicator for hospitalization forecasting in the United States. Epidemics 2023;45:100728. [PMID: 37976681 PMCID: PMC10871058 DOI: 10.1016/j.epidem.2023.100728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 09/29/2023] [Accepted: 11/06/2023] [Indexed: 11/19/2023]  Open
12
Drake JM, Handel A, Marty É, O’Dea EB, O’Sullivan T, Righi G, Tredennick AT. A data-driven semi-parametric model of SARS-CoV-2 transmission in the United States. PLoS Comput Biol 2023;19:e1011610. [PMID: 37939201 PMCID: PMC10659176 DOI: 10.1371/journal.pcbi.1011610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 11/20/2023] [Accepted: 10/17/2023] [Indexed: 11/10/2023]  Open
13
Sharmin M, Manivannan M, Woo D, Sorel O, Auclair JR, Gandhi M, Mujawar I. Cross-sectional Ct distributions from qPCR tests can provide an early warning signal for the spread of COVID-19 in communities. Front Public Health 2023;11:1185720. [PMID: 37841738 PMCID: PMC10570742 DOI: 10.3389/fpubh.2023.1185720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 09/07/2023] [Indexed: 10/17/2023]  Open
14
Chu AM, Chong ACY, Lai NHT, Tiwari A, So MKP. Enhancing the Predictive Power of Google Trends Data Through Network Analysis: Infodemiology Study of COVID-19. JMIR Public Health Surveill 2023;9:e42446. [PMID: 37676701 PMCID: PMC10488898 DOI: 10.2196/42446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 06/01/2023] [Accepted: 06/29/2023] [Indexed: 09/08/2023]  Open
15
Mellor J, Overton CE, Fyles M, Chawner L, Baxter J, Baird T, Ward T. Understanding the leading indicators of hospital admissions from COVID-19 across successive waves in the UK. Epidemiol Infect 2023;151:e172. [PMID: 37664991 PMCID: PMC10600913 DOI: 10.1017/s0950268823001449] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 07/20/2023] [Accepted: 07/25/2023] [Indexed: 09/05/2023]  Open
16
Bilinski AM, Salomon JA, Hatfield LA. Adaptive metrics for an evolving pandemic: A dynamic approach to area-level COVID-19 risk designations. Proc Natl Acad Sci U S A 2023;120:e2302528120. [PMID: 37527346 PMCID: PMC10410764 DOI: 10.1073/pnas.2302528120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/27/2023] [Indexed: 08/03/2023]  Open
17
Li X, Liu H, Gao L, Sherchan SP, Zhou T, Khan SJ, van Loosdrecht MCM, Wang Q. Wastewater-based epidemiology predicts COVID-19-induced weekly new hospital admissions in over 150 USA counties. Nat Commun 2023;14:4548. [PMID: 37507407 PMCID: PMC10382499 DOI: 10.1038/s41467-023-40305-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 07/19/2023] [Indexed: 07/30/2023]  Open
18
Garcia-Carretero R, Vazquez-Gomez O, Ordoñez-Garcia M, Garrido-Peño N, Gil-Prieto R, Gil-de-Miguel A. Differences in Trends in Admissions and Outcomes among Patients from a Secondary Hospital in Madrid during the COVID-19 Pandemic: A Hospital-Based Epidemiological Analysis (2020-2022). Viruses 2023;15:1616. [PMID: 37515302 PMCID: PMC10384448 DOI: 10.3390/v15071616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 07/17/2023] [Accepted: 07/21/2023] [Indexed: 07/30/2023]  Open
19
Chen X, Dong Y, Wu M. Medical capacity investment for epidemic disease: The effects of policymaker's confidence and public trust. RISK ANALYSIS : AN OFFICIAL PUBLICATION OF THE SOCIETY FOR RISK ANALYSIS 2023;43:1187-1211. [PMID: 35822620 DOI: 10.1111/risa.13988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
20
Reich NG, Wang Y, Burns M, Ergas R, Cramer EY, Ray EL. Assessing the utility of COVID-19 case reports as a leading indicator for hospitalization forecasting in the United States. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.03.08.23286582. [PMID: 36945396 PMCID: PMC10029058 DOI: 10.1101/2023.03.08.23286582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
21
Du H, Dong E, Badr HS, Petrone ME, Grubaugh ND, Gardner LM. Incorporating variant frequencies data into short-term forecasting for COVID-19 cases and deaths in the USA: a deep learning approach. EBioMedicine 2023;89:104482. [PMID: 36821889 PMCID: PMC9943054 DOI: 10.1016/j.ebiom.2023.104482] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 01/30/2023] [Accepted: 02/02/2023] [Indexed: 02/24/2023]  Open
22
Bilinski AM, Salomon JA, Hatfield LA. Adaptive metrics for an evolving pandemic A dynamic approach to area-level COVID-19 risk designations. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.02.15.23285969. [PMID: 36824769 PMCID: PMC9949193 DOI: 10.1101/2023.02.15.23285969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
23
Forecasting hospital-level COVID-19 admissions using real-time mobility data. COMMUNICATIONS MEDICINE 2023;3:25. [PMID: 36788347 PMCID: PMC9927044 DOI: 10.1038/s43856-023-00253-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 01/31/2023] [Indexed: 02/16/2023]  Open
24
McWilliams C, Bothwell L, Yousey‐Hindes K, Hadler JL. Trends in disparities in COVID hospitalizations among community-dwelling residents of two counties in Connecticut, before and after vaccine introduction, March 2020-September 2021. Influenza Other Respir Viruses 2023;17:e13082. [PMID: 36509459 PMCID: PMC9835416 DOI: 10.1111/irv.13082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 11/16/2022] [Accepted: 11/17/2022] [Indexed: 12/15/2022]  Open
25
Damone A, Vainieri M, Brunetto MR, Bonino F, Nuti S, Ciuti G. Decision-making algorithm and predictive model to assess the impact of infectious disease epidemics on the healthcare system: the COVID-19 case study in Italy. IEEE J Biomed Health Inform 2022;26:3661-3672. [PMID: 35544510 DOI: 10.1109/jbhi.2022.3174470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
26
Her PH, Saeed S, Tram KH, Bhatnagar SR. Novel mobility index tracks COVID-19 transmission following stay-at-home orders. Sci Rep 2022;12:7654. [PMID: 35538129 PMCID: PMC9088135 DOI: 10.1038/s41598-022-10941-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 04/12/2022] [Indexed: 12/13/2022]  Open
27
Reich NG, Ray EL. Collaborative modeling key to improving outbreak response. Proc Natl Acad Sci U S A 2022;119:e2200703119. [PMID: 35320028 PMCID: PMC9169077 DOI: 10.1073/pnas.2200703119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
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