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Wu CD, Fan YB, Chen X, Cao JW, Ye JY, Feng ML, Liu XX, Sun WJ, Liu RN, Wang AY. Analysis of endophytic bacterial diversity in seeds of different genotypes of cotton and the suppression of Verticillium wilt pathogen infection by a synthetic microbial community. BMC PLANT BIOLOGY 2024; 24:263. [PMID: 38594616 PMCID: PMC11005247 DOI: 10.1186/s12870-024-04910-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 03/15/2024] [Indexed: 04/11/2024]
Abstract
BACKGROUND In agricultural production, fungal diseases significantly impact the yield and quality of cotton (Gossypium spp.) with Verticillium wilt posing a particularly severe threat. RESULTS This study is focused on investigating the effectiveness of endophytic microbial communities present in the seeds of disease-resistant cotton genotypes in the control of cotton Verticillium wilt. The technique of 16S ribosomal RNA (16S rRNA) amplicon sequencing identified a significant enrichment of the Bacillus genus in the resistant genotype Xinluzao 78, which differed from the endophytic bacterial community structure in the susceptible genotype Xinluzao 63. Specific enriched strains were isolated and screened from the seeds of Xinluzao 78 to further explore the biological functions of seed endophytes. A synthetic microbial community (SynCom) was constructed using the broken-rod model, and seeds of the susceptible genotype Xinluzao 63 in this community that had been soaked with the SynCom were found to significantly control the occurrence of Verticillium wilt and regulate the growth of cotton plants. Antibiotic screening techniques were used to preliminarily identify the colonization of strains in the community. These techniques revealed that the strains can colonize plant tissues and occupy ecological niches in cotton tissues through a priority effect, which prevents infection by pathogens. CONCLUSION This study highlights the key role of seed endophytes in driving plant disease defense and provides a theoretical basis for the future application of SynComs in agriculture.
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Affiliation(s)
- Chong-Die Wu
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Yong-Bin Fan
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Xue Chen
- College of Life Sciences, Shihezi University, Shihezi, China
| | - Jiang-Wei Cao
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Jing-Yi Ye
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Meng-Lei Feng
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Xing-Xing Liu
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Wen-Jing Sun
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Rui-Na Liu
- College of Life Sciences, Shihezi University, Shihezi, China
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China
| | - Ai-Ying Wang
- College of Life Sciences, Shihezi University, Shihezi, China.
- Key Laboratory of Oasis Town and Mountain-Basin System Ecology, Xinjiang Production and Construction Corps, Shihezi, China.
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Wu H, Gao T, Hu A, Wang J. Network Complexity and Stability of Microbes Enhanced by Microplastic Diversity. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:4334-4345. [PMID: 38382548 DOI: 10.1021/acs.est.3c08704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Microplastic mixtures are ubiquitously distributed in global ecosystems and include varying types. However, it remains unknown how microplastic diversity affects the biotic interactions of microbes. Here, we developed novel experiments of 600 microcosms with microplastic diversity ranging from 1 to 6 types and examined ecological networks for microbial communities in lake sediments after 2 months of incubation at 15 and 20 °C. We found that microplastic diversity generally enhanced the complexity of microbial networks at both temperatures, such as increasing network connectance and reducing average path length. This phenomenon was further confirmed by strengthened species interactions toward high microplastic diversity except for the negative interactions at 15 °C. Interestingly, increasing temperatures further exaggerated the effects of microplastic diversity on network structures, resulting in higher network connectivity and species interactions. Consistently, using species extinction simulations, we found that higher microplastic diversity and temperature led to more robust networks, and their effects were additionally and positively mediated by the presence of biodegradable microplastics. Our findings provide the first evidence that increasing microplastic diversity could unexpectedly promote the complexity and stability of microbial networks and that future warming could amplify this effect.
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Affiliation(s)
- Hao Wu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
- College of Oceanography, Hohai University, Nanjing 210098, China
| | - Tianheng Gao
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
- College of Marine Science and Engineering, Nanjing Normal University, Nanjing, Jiangsu 210023, China
| | - Ang Hu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jianjun Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
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O'Brien S, Culbert CT, Barraclough TG. Community composition drives siderophore dynamics in multispecies bacterial communities. BMC Ecol Evol 2023; 23:45. [PMID: 37658316 PMCID: PMC10472669 DOI: 10.1186/s12862-023-02152-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 08/17/2023] [Indexed: 09/03/2023] Open
Abstract
BACKGROUND Intraspecific public goods are commonly shared within microbial populations, where the benefits of public goods are largely limited to closely related conspecifics. One example is the production of iron-scavenging siderophores that deliver iron to cells via specific cell envelope receptor and transport systems. Intraspecific social exploitation of siderophore producers is common, since non-producers avoid the costs of production but retain the cell envelope machinery for siderophore uptake. However, little is known about how interactions between species (i.e., interspecific interactions) can shape intraspecific public goods exploitation. Here, we predicted that strong competition for iron between species in diverse communities will increase costs of siderophore cooperation, and hence drive intraspecific exploitation. We examined how increasing microbial community species diversity shapes intraspecific social dynamics by monitoring the growth of siderophore producers and non-producers of the plant-growth promoting bacterium Pseudomonas fluorescens, embedded within tree-hole microbial communities ranging from 2 to 15 species. RESULTS We find, contrary to our prediction, that siderophore production is favoured at higher levels of community species richness, driven by increased likelihood of encountering key species that reduce the growth of siderophore non-producing (but not producing) strains of P. fluorescens. CONCLUSIONS Our results suggest that maintaining a diverse soil microbiota could partly contribute to the maintenance of siderophore production in natural communities.
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Affiliation(s)
- Siobhán O'Brien
- Department of Microbiology, School of Genetics and Microbiology, Moyne Institute of Preventive Medicine, Trinity College Dublin, Dublin 2, Ireland.
| | - Christopher T Culbert
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire, SL5 7PY, UK
| | - Timothy G Barraclough
- Department of Biology, University of Oxford, 11a Mansfield Road, Oxford, OX1 3SZ, UK
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Zemp DC, Guerrero-Ramirez N, Brambach F, Darras K, Grass I, Potapov A, Röll A, Arimond I, Ballauff J, Behling H, Berkelmann D, Biagioni S, Buchori D, Craven D, Daniel R, Gailing O, Ellsäßer F, Fardiansah R, Hennings N, Irawan B, Khokthong W, Krashevska V, Krause A, Kückes J, Li K, Lorenz H, Maraun M, Merk MS, Moura CCM, Mulyani YA, Paterno GB, Pebrianti HD, Polle A, Prameswari DA, Sachsenmaier L, Scheu S, Schneider D, Setiajiati F, Setyaningsih CA, Sundawati L, Tscharntke T, Wollni M, Hölscher D, Kreft H. Tree islands enhance biodiversity and functioning in oil palm landscapes. Nature 2023; 618:316-321. [PMID: 37225981 PMCID: PMC10247383 DOI: 10.1038/s41586-023-06086-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 04/14/2023] [Indexed: 05/26/2023]
Abstract
In the United Nations Decade on Ecosystem Restoration1, large knowledge gaps persist on how to increase biodiversity and ecosystem functioning in cash crop-dominated tropical landscapes2. Here, we present findings from a large-scale, 5-year ecosystem restoration experiment in an oil palm landscape enriched with 52 tree islands, encompassing assessments of ten indicators of biodiversity and 19 indicators of ecosystem functioning. Overall, indicators of biodiversity and ecosystem functioning, as well as multidiversity and ecosystem multifunctionality, were higher in tree islands compared to conventionally managed oil palm. Larger tree islands led to larger gains in multidiversity through changes in vegetation structure. Furthermore, tree enrichment did not decrease landscape-scale oil palm yield. Our results demonstrate that enriching oil palm-dominated landscapes with tree islands is a promising ecological restoration strategy, yet should not replace the protection of remaining forests.
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Affiliation(s)
- Delphine Clara Zemp
- Conservation Biology, Institute of Biology, Faculty of Sciences, University of Neuchâtel, Neuchâtel, Switzerland.
- Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany.
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany.
| | - Nathaly Guerrero-Ramirez
- Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Fabian Brambach
- Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Kevin Darras
- Agroecology, Department of Crop Sciences, Faculty of Agricultural Science, University of Göttingen, Göttingen, Germany
| | - Ingo Grass
- Ecology of Tropical Agricultural Systems, Institute of Agricultural Sciences in the Tropics, University of Hohenheim, Stuttgart, Germany
| | - Anton Potapov
- Animal Ecology, J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Alexander Röll
- Tropical Silviculture and Forest Ecology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Isabelle Arimond
- Agroecology, Department of Crop Sciences, Faculty of Agricultural Science, University of Göttingen, Göttingen, Germany
- Functional Agrobiodiversity, Dept. of Crop Sciences, Faculty of Agricultural Science, University of Göttingen, Göttingen, Germany
| | - Johannes Ballauff
- Forest Botany and Tree Physiology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Hermann Behling
- Department of Palynology and Climate Dynamics, Albrecht-von-Haller-Institute for Plant Sciences, Göttingen, Germany
| | - Dirk Berkelmann
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Germany
| | - Siria Biagioni
- Department of Palynology and Climate Dynamics, Albrecht-von-Haller-Institute for Plant Sciences, University of Göttingen, Göttingen, Germany
| | - Damayanti Buchori
- Department of Plant Protection, Faculty of Agriculture, Institut Pertanian Bogor. Jl. Meranti, IPB Dramaga Campus, Bogor, Indonesia
- Center for Transdisciplinary and Sustainability Sciences, IPB University, Jalan Pajajaran, Indonesia
| | - Dylan Craven
- Centre for Ecosystem Modeling and Monitoring, Facultad de Ciencias, Universidad Mayor, Santiago, Chile
| | - Rolf Daniel
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Germany
| | - Oliver Gailing
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
- Forest Genetics and Forest Tree Breeding, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Florian Ellsäßer
- Tropical Silviculture and Forest Ecology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
- Department of Natural Resources, University of Twente, Enschede, Netherlands
| | - Riko Fardiansah
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
- Zoological Museum, Center of Natural History, Universität Hamburg, Hamburg, Germany
- Faculty of Forestry, University of Jambi Jln Raya Jambi, Jambi, Indonesia
| | - Nina Hennings
- Biogeochemistry of Agroecosystems, Faculty of Agricultural Science, University of Göttingen, Göttingen, Germany
| | - Bambang Irawan
- Faculty of Forestry, University of Jambi Jln Raya Jambi, Jambi, Indonesia
| | - Watit Khokthong
- Tropical Silviculture and Forest Ecology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
| | - Valentyna Krashevska
- Animal Ecology, J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Alena Krause
- Animal Ecology, J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Johanna Kückes
- Tropical Silviculture and Forest Ecology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Kevin Li
- Agroecology, Department of Crop Sciences, Faculty of Agricultural Science, University of Göttingen, Göttingen, Germany
| | - Hendrik Lorenz
- Tropical Silviculture and Forest Ecology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Mark Maraun
- Animal Ecology, J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Miryam Sarah Merk
- Chairs of Statistics and Econometrics, Faculty of Business and Economics, University of Göttingen, Göttingen, Germany
| | - Carina C M Moura
- Forest Genetics and Forest Tree Breeding, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Yeni A Mulyani
- Forest Resources Conservation and Ecotourism, Faculty of Forestry and Environment, IPB University, Kampus IPB Darmaga, Bogor, Indonesia
| | - Gustavo B Paterno
- Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | | | - Andrea Polle
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
- Forest Botany and Tree Physiology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Di Ajeng Prameswari
- Animal Ecology, J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Lena Sachsenmaier
- Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Systematic Botany and Functional Biodiversity, Institute of Biology, Leipzig University, Leipzig, Germany
| | - Stefan Scheu
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
- Animal Ecology, J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Göttingen, Germany
| | - Dominik Schneider
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Germany
| | - Fitta Setiajiati
- Department of Forest Management, Faculty of Forestry and Environment, IPB University, Kampus IPB Darmaga, Bogor, Indonesia
| | - Christina Ani Setyaningsih
- Department of Palynology and Climate Dynamics, Albrecht-von-Haller-Institute for Plant Sciences, Göttingen, Germany
| | - Leti Sundawati
- Department of Forest Management, Faculty of Forestry and Environment, IPB University, Kampus IPB Darmaga, Bogor, Indonesia
| | - Teja Tscharntke
- Agroecology, Department of Crop Sciences, Faculty of Agricultural Science, University of Göttingen, Göttingen, Germany
| | - Meike Wollni
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
- Environmental and Resource Economics, Department of Agricultural Economics and Rural Development, Faculty of Agricultural Sciences, University of Göttingen, Göttingen, Germany
| | - Dirk Hölscher
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
- Tropical Silviculture and Forest Ecology, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
| | - Holger Kreft
- Biodiversity, Macroecology and Biogeography, Faculty of Forest Sciences and Forest Ecology, University of Göttingen, Göttingen, Germany
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
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Haider S, Palm S, Bruelheide H, de Villemereuil P, Menzel A, Lachmuth S. Disturbance and indirect effects of climate warming support a plant invader in mountains. OIKOS 2022. [DOI: 10.1111/oik.08783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sylvia Haider
- Martin Luther Univ. Halle‐Wittenberg, Inst. of Biology/Geobotany and Botanical Garden Halle (Saale) Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Leipzig Germany
| | - Sebastian Palm
- Martin Luther Univ. Halle‐Wittenberg, Inst. of Biology/Geobotany and Botanical Garden Halle (Saale) Germany
| | - Helge Bruelheide
- Martin Luther Univ. Halle‐Wittenberg, Inst. of Biology/Geobotany and Botanical Garden Halle (Saale) Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Leipzig Germany
| | - Pierre de Villemereuil
- Inst. de Systématique, Évolution, Biodiversité (ISYEB), École Pratique des Hautes Études
- PSL, MNHN, CNRS, SU, UA Paris France
| | - Annette Menzel
- TUM School of Life Sciences, Technical Univ. of Munich Freising Germany
- Inst. for Advanced Study, Technical Univ. of Munich Garching Germany
| | - Susanne Lachmuth
- Martin Luther Univ. Halle‐Wittenberg, Inst. of Biology/Geobotany and Botanical Garden Halle (Saale) Germany
- Univ. of Maryland Center for Environmental Science, Appalachian Laboratory Frostburg MD USA
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6
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Wright RCT, Friman VP, Smith MCM, Brockhurst MA. Functional diversity increases the efficacy of phage combinations. MICROBIOLOGY (READING, ENGLAND) 2021; 167. [PMID: 34850676 PMCID: PMC8743627 DOI: 10.1099/mic.0.001110] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Phage therapy is a promising alternative to traditional antibiotics for treating bacterial infections. Such phage-based therapeutics typically contain multiple phages, but how the efficacy of phage combinations scales with phage richness, identity and functional traits is unclear. Here, we experimentally tested the efficacy of 827 unique phage combinations ranging in phage richness from one to 12 phages. The efficacy of phage combinations increased with phage richness. However, complementarity between functionally diverse phages allowed efficacy to be maximized at lower levels of phage richness in functionally diverse combinations. These findings suggest that phage functional diversity is the key property of effective phage combinations, enabling the design of simple but effective phage therapies that overcome the practical and regulatory hurdles that limit development of more diverse phage therapy cocktails.
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Affiliation(s)
- Rosanna C T Wright
- Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.,Department of Biology, University of York, York, UK.,Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | | | | | - Michael A Brockhurst
- Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
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7
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Figueiredo ART, Özkaya Ö, Kümmerli R, Kramer J. Siderophores drive invasion dynamics in bacterial communities through their dual role as public good versus public bad. Ecol Lett 2021; 25:138-150. [PMID: 34753204 PMCID: PMC9299690 DOI: 10.1111/ele.13912] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 07/21/2021] [Accepted: 10/12/2021] [Indexed: 11/30/2022]
Abstract
Microbial invasions can compromise ecosystem services and spur dysbiosis and disease in hosts. Nevertheless, the mechanisms determining invasion outcomes often remain unclear. Here, we examine the role of iron‐scavenging siderophores in driving invasions of Pseudomonas aeruginosa into resident communities of environmental pseudomonads. Siderophores can be ‘public goods’ by delivering iron to individuals possessing matching receptors; but they can also be ‘public bads’ by withholding iron from competitors lacking these receptors. Accordingly, siderophores should either promote or impede invasion, depending on their effects on invader and resident growth. Using supernatant feeding and invasion assays, we show that invasion success indeed increased when the invader could use its siderophores to inhibit (public bad) rather than stimulate (public good) resident growth. Conversely, invasion success decreased the more the invader was inhibited by the residents’ siderophores. Our findings identify siderophores as a major driver of invasion dynamics in bacterial communities under iron‐limited conditions.
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Affiliation(s)
- Alexandre R T Figueiredo
- Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.,Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Özhan Özkaya
- Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
| | - Rolf Kümmerli
- Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
| | - Jos Kramer
- Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
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8
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Phytoplankton biodiversity is more important for ecosystem functioning in highly variable thermal environments. Proc Natl Acad Sci U S A 2021; 118:2019591118. [PMID: 34446547 PMCID: PMC8536371 DOI: 10.1073/pnas.2019591118] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
The 21st century has seen an acceleration of anthropogenic climate change and biodiversity loss, with both stressors deemed to affect ecosystem functioning. However, we know little about the interactive effects of both stressors and in particular about the interaction of increased climatic variability and biodiversity loss on ecosystem functioning. This should be remedied because larger climatic variability is one of the main features of climate change. Here, we demonstrated that temperature fluctuations led to changes in the importance of biodiversity for ecosystem functioning. We used microcosm communities of different phytoplankton species richness and exposed them to a constant, mild, and severe temperature-fluctuating environment. Wider temperature fluctuations led to steeper biodiversity-ecosystem functioning slopes, meaning that species loss had a stronger negative effect on ecosystem functioning in more fluctuating environments. For severe temperature fluctuations, the slope increased through time due to a decrease of the productivity of species-poor communities over time. We developed a theoretical competition model to better understand our experimental results and showed that larger differences in thermal tolerances across species led to steeper biodiversity-ecosystem functioning slopes. Species-rich communities maintained their ecosystem functioning with increased fluctuation as they contained species able to resist the thermally fluctuating environments, while this was on average not the case in species-poor communities. Our results highlight the importance of biodiversity for maintaining ecosystem functions and services in the context of increased climatic variability under climate change.
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9
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Xiong X, Xing Y, He J, Wang L, Shen Z, Chen W, Huang Q. Keystone species determine the "selection mechanism" of multispecies biofilms for bacteria from soil aggregates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 773:145069. [PMID: 33592465 DOI: 10.1016/j.scitotenv.2021.145069] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Revised: 01/05/2021] [Accepted: 01/05/2021] [Indexed: 06/12/2023]
Abstract
Soil aggregates are integral parts of soil structure and play paramount roles in supporting microbial diversity, nutrient cycling and water retention. The formation of multispecies biofilms is a survival strategy for bacterial adaptation to the environment and help microorganisms access more complex nutrient sources via labor sharing, especially in soil aggregates. However, very little is known about the effect of species richness and composition on bacterial multispecies biofilms formation in different size soil aggregates. A random partition design strategy was used to identify the relative importance of bacterial richness and composition in driving multispecies biofilms. The strategy can separate the effects of species richness and composition from the soil aggregates occurring bacterial assemblage. Increasing species richness was found to be always positively correlated with multispecies biofilms productivity for bacteria from the same aggregate fractions. General linear model analysis revealed that species composition contributed more than species richness to forming multispecies biofilms, suggesting that "selection mechanism" plays a more important role than "complementarity mechanism". This "selection mechanism" relies mainly on culturable keystone species that can significantly enhance the formation of multispecies biofilms. The co-occurrence network was investigated to explore whether the culturable keystone species from the random partitions experiment are consistent with the keystone taxa. Four out of 10 culturable keystone species isolated from soil aggregates were matched the keystone taxa. It is concluded that the culturable keystone species determine the multispecies biofilms formation for bacteria residing in soil aggregates. This study provides insights into the role of culturable keystone species in multispecies biofilms. Understanding the formation of multispecies biofilms is fundamental to decipher how microbes interact with each other in soil aggregates. Meanwhile, it will enhance our knowledge of the quorum behavior of complex bacterial communities.
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Affiliation(s)
- Xiang Xiong
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Yanfang Xing
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Jinzhi He
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Li Wang
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Zhenzhen Shen
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Wenli Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Qiaoyun Huang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
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10
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Fields B, Moffat EK, Friman VP, Harrison E. The impact of intra-specific diversity in the rhizobia-legume symbiosis. MICROBIOLOGY-SGM 2021; 167. [PMID: 33829985 PMCID: PMC8289218 DOI: 10.1099/mic.0.001051] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Rhizobia - nitrogen-fixing, root-nodulating bacteria - play a critical role in both plant ecosystems and sustainable agriculture. Rhizobia form intracellular infections within legumes roots where they produce plant accessible nitrogen from atmospheric nitrogen and thus reduce the reliance on industrial inputs. The rhizobia-legume symbiosis is often treated as a pairwise relationship between single genotypes, both in research and in the production of rhizobial inoculants. However in nature individual plants are infected by a high diversity of rhizobia symbionts. How this diversity affects productivity within the symbiosis is unclear. Here, we use a powerful statistical approach to assess the impact of diversity within the Rhizobium leguminosarum - clover symbiosis using a biodiversity-ecosystem function framework. Statistically, we found no significant impact of rhizobium diversity. However this relationship was weakly positive - rather than negative - indicating that there is no significant cost to increasing inoculant diversity. Productivity was influenced by the identity of the strains within an inoculant; strains with the highest individual performance showed a significant positive contribution within mixed inoculants. Overall, inoculant effectiveness was best predicted by the individual performance of the best inoculant member, and only weakly predicted by the worst performing member. Collectively, our data suggest that the Rhizobium leguminosarum - clover symbiosis displays a weak diversity-function relationship, but that inoculant performance can be improved through the inclusion of high performing strains. Given the wide environmental dependence of rhizobial inoculant quality, multi-strain inoculants could be highly successful as they increase the likelihood of including a strain well adapted to local conditions across different environments.
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Affiliation(s)
- Bryden Fields
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Emma K Moffat
- Department of Animal Plant Sciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK
| | - Ville-Petri Friman
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Ellie Harrison
- Department of Animal Plant Sciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK
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11
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Yan J, Zhang Y, Crawford KM, Chen X, Yu S, Wu J. Plant genotypic diversity effects on soil nematodes vary with trophic level. THE NEW PHYTOLOGIST 2021; 229:575-584. [PMID: 32813893 DOI: 10.1111/nph.16829] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 07/15/2020] [Indexed: 06/11/2023]
Abstract
At local spatial scales, loss of genetic diversity within species can lead to species loss. Few studies, however, have examined plant genotypic diversity effects across trophic levels. We investigated genotypic diversity effects of Phragmites australis on belowground biomass and soil nematode communities. Our results revealed that belowground plant biomass and nematode abundance responses to plant genotypic diversity were uncoupled. Decreasing plant genotypic diversity decreased the abundance of lower, but not higher trophic level nematodes. Low plant genotypic diversity also decreased the structural footprint and functional indices of nematodes, indicating lowered metabolic functioning of higher trophic level nematodes and decreased soil food web stability. Our study suggests that plant genotypic diversity effects differ across trophic levels, taxonomic groups and ecosystem functions and that decreasing plant genotypic diversity could destabilise belowground food webs. This highlights the importance of conserving intraspecific plant diversity.
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Affiliation(s)
- Jun Yan
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Coastal Ecosystems Research Station of Yangtze River Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, 200433, China
| | - Youzheng Zhang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Coastal Ecosystems Research Station of Yangtze River Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, 200433, China
| | - Kerri M Crawford
- Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77204, USA
| | - Xiaoyong Chen
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai, 200241, China
| | - Shuo Yu
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai, 200241, China
- Fourth Institute of Oceanography, Ministry of Natural Resources, Beihai, 536000, China
| | - Jihua Wu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Coastal Ecosystems Research Station of Yangtze River Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, 200433, China
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12
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Zhong X, Chen Z, Li Y, Ding K, Liu W, Liu Y, Yuan Y, Zhang M, Baker AJM, Yang W, Fei Y, Wang Y, Chao Y, Qiu R. Factors influencing heavy metal availability and risk assessment of soils at typical metal mines in Eastern China. JOURNAL OF HAZARDOUS MATERIALS 2020; 400:123289. [PMID: 32947698 DOI: 10.1016/j.jhazmat.2020.123289] [Citation(s) in RCA: 109] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Revised: 03/11/2020] [Accepted: 06/20/2020] [Indexed: 06/11/2023]
Abstract
China exemplifies the serious and widespread soil heavy metal pollution generated by mining activities. A total of 420 soil samples from 58 metal mines was collected across Eastern China. Total and available heavy metal concentrations, soil physico-chemical properties and geological indices were determined and collected. Risk assessments were applied, and a successive multivariate statistical analysis was carried out to provide insights into the heavy metal contamination characteristics and environmental drivers of heavy metal availability. The results suggested that although the degrees of pollution varied between different mine types, in general they had similar contamination characteristics in different regions. The major pollutants for total concentrations were found to be Cd and As in south and northeast China. The availability of Zn and Cd is relatively higher in south China. Soil physico-chemical properties had major effect on metal availability where soil pH was the most important factor. On a continental scale, soil pH and EC were influenced by the local climate patterns which could further impact on heavy metal availability. Enlightened by this study, future remediation strategies should be focused on steadily increasing soil pH, and building adaptable and sustainable ecological system to maintain low metal availabilities in mine site soils.
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Affiliation(s)
- Xi Zhong
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Ziwu Chen
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Yaying Li
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China
| | - Kengbo Ding
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Wenshen Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Ye Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Yongqiang Yuan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China
| | - Miaoyue Zhang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China
| | - Alan J M Baker
- School of BioSciences, The University of Melbourne, Melbourne, VIC, 3010, Australia; Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane, QLD, 4072, Australia
| | - Wenjun Yang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Yingheng Fei
- School of Environmental Science and Engineering, Guangzhou University, Guangzhou, 510006, China
| | - Yujie Wang
- School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou, 510006, China
| | - Yuanqing Chao
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China.
| | - Rongliang Qiu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China.
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13
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Legacy Effects Overshadow Tree Diversity Effects on Soil Fungal Communities in Oil Palm-Enrichment Plantations. Microorganisms 2020; 8:microorganisms8101577. [PMID: 33066264 PMCID: PMC7656304 DOI: 10.3390/microorganisms8101577] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 09/28/2020] [Accepted: 10/09/2020] [Indexed: 11/24/2022] Open
Abstract
Financially profitable large-scale cultivation of oil palm monocultures in previously diverse tropical rain forest areas constitutes a major ecological crisis today. Not only is a large proportion of the aboveground diversity lost, but the belowground soil microbiome, which is important for the sustainability of soil function, is massively altered. Intermixing oil palms with native tree species promotes vegetation biodiversity and stand structural complexity in plantations, but the impact on soil fungi remains unknown. Here, we analyzed the diversity and community composition of soil fungi three years after tree diversity enrichment in an oil palm plantation in Sumatra (Indonesia). We tested the effects of tree diversity, stand structural complexity indices, and soil abiotic conditions on the diversity and community composition of soil fungi. We hypothesized that the enrichment experiment alters the taxonomic and functional community composition, promoting soil fungal diversity. Fungal community composition was affected by soil abiotic conditions (pH, N, and P), but not by tree diversity and stand structural complexity indices. These results suggest that intensive land use and abiotic filters are a legacy to fungal communities, overshadowing the structuring effects of the vegetation, at least in the initial years after enrichment plantings.
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14
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Raza W, Wang J, Jousset A, Friman VP, Mei X, Wang S, Wei Z, Shen Q. Bacterial community richness shifts the balance between volatile organic compound-mediated microbe-pathogen and microbe-plant interactions. Proc Biol Sci 2020; 287:20200403. [PMID: 32290797 DOI: 10.1098/rspb.2020.0403] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Even though bacteria are important in determining plant growth and health via volatile organic compounds (VOCs), it is unclear how these beneficial effects emerge in multi-species microbiomes. Here we studied this using a model plant-bacteria system, where we manipulated bacterial community richness and composition and determined the subsequent effects on VOC production and VOC-mediated pathogen suppression and plant growth-promotion. We assembled VOC-producing bacterial communities in different richness levels ranging from one to 12 strains using three soil-dwelling bacterial genera (Bacillus, Paenibacillus and Pseudomonas) and investigated how the composition and richness of bacterial community affect the production and functioning of VOCs. We found that VOC production correlated positively with pathogen suppression and plant growth promotion and that all bacteria produced a diverse set of VOCs. However, while pathogen suppression was maximized at intermediate community richness levels when the relative amount and the number of VOCs were the highest, plant growth promotion was maximized at low richness levels and was only affected by the relative amount of plant growth-promoting VOCs. The contrasting effects of richness could be explained by differences in the amount and number of produced VOCs and by opposing effects of community productivity and evenness on pathogen suppression and plant-growth promotion along the richness gradient. Together, these results suggest that the number of interacting bacterial species and the structure of the rhizosphere microbiome drive the balance between VOC-mediated microbe-pathogen and microbe-plant interactions potentially affecting plant disease outcomes in natural and agricultural ecosystems.
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Affiliation(s)
- Waseem Raza
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China
| | - Jianing Wang
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China
| | - Alexandre Jousset
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China.,Institute for Environmental Biology, Ecology and Biodiversity, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | - Ville-Petri Friman
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China.,Department of Biology, University of York, Wentworth Way, York YO10 5DD, UK
| | - Xinlan Mei
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China
| | - Shimei Wang
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China
| | - Zhong Wei
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China
| | - Qirong Shen
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Weigang 1, Nanjing 210095, People's Republic of China
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15
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Banitz T, Chatzinotas A, Worrich A. Prospects for Integrating Disturbances, Biodiversity and Ecosystem Functioning Using Microbial Systems. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.00021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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16
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Diversity and temperature indirectly reduce CO 2 concentrations in experimental freshwater communities. Oecologia 2020; 192:515-527. [PMID: 31950262 PMCID: PMC7002461 DOI: 10.1007/s00442-020-04593-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 01/02/2020] [Indexed: 11/22/2022]
Abstract
Biodiversity loss and climate warming are occurring in concert, with potentially profound impacts on ecosystem functioning. We currently know very little about the combined effects of these changes on the links between the community structure, dynamics and the resulting in situ CO2 concentrations in freshwater ecosystems. Here we aimed to determine both individual and combined effects of temperature and non-resource diversity (species inedible for a given consumer) on CO2 concentration. Our analysis further aimed to establish both direct effects on CO2 concentrations and potential indirect effects that occur via changes to the phytoplankton and zooplankton biomasses. Our results showed that there were no interactive effects of changes in temperature and diversity on CO2 concentration in the water. Instead, independent increases in either temperature or non-resource diversity resulted in a substantial reduction in CO2 concentrations, particularly at the highest non-resource diversity. The effects of non-resource diversity and warming on CO2 were indirect, resulting largely from the positive impacts on total biomass of primary producers. Our study is the first to experimentally partition the impacts of temperature and diversity on the consumer–resource dynamics and associated changes to CO2 concentrations. It provides new mechanistic insights into the role of diverse plankton communities for ecosystem functioning and their importance in regulating CO2 dynamics under ongoing climate warming.
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17
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Bestion E, Barton S, García FC, Warfield R, Yvon-Durocher G. Abrupt declines in marine phytoplankton production driven by warming and biodiversity loss in a microcosm experiment. Ecol Lett 2020; 23:457-466. [PMID: 31925914 PMCID: PMC7007813 DOI: 10.1111/ele.13444] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 11/12/2019] [Accepted: 11/27/2019] [Indexed: 01/19/2023]
Abstract
Rising sea surface temperatures are expected to lead to the loss of phytoplankton biodiversity. However, we currently understand very little about the interactions between warming, loss of phytoplankton diversity and its impact on the oceans' primary production. We experimentally manipulated the species richness of marine phytoplankton communities under a range of warming scenarios, and found that ecosystem production declined more abruptly with species loss in communities exposed to higher temperatures. Species contributing positively to ecosystem production in the warmed treatments were those that had the highest optimal temperatures for photosynthesis, implying that the synergistic impacts of warming and biodiversity loss on ecosystem functioning were mediated by thermal trait variability. As species were lost from the communities, the probability of taxa remaining that could tolerate warming diminished, resulting in abrupt declines in ecosystem production. Our results highlight the potential for synergistic effects of warming and biodiversity loss on marine primary production.
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Affiliation(s)
- Elvire Bestion
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9EZ, UK.,Station d'Ecologie Théorique et Expérimentale, UMR 5321, Université Paul Sabatier, Moulis, 09200, France
| | - Samuel Barton
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9EZ, UK
| | - Francisca C García
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9EZ, UK
| | - Ruth Warfield
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9EZ, UK
| | - Gabriel Yvon-Durocher
- Environment and Sustainability Institute, University of Exeter, Penryn, TR10 9EZ, UK
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18
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Saleem M, Hu J, Jousset A. More Than the Sum of Its Parts: Microbiome Biodiversity as a Driver of Plant Growth and Soil Health. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2019. [DOI: 10.1146/annurev-ecolsys-110617-062605] [Citation(s) in RCA: 117] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Microorganisms drive several processes needed for robust plant growth and health. Harnessing microbial functions is thus key to productive and sustainable food production. Molecular methods have led to a greater understanding of the soil microbiome composition. However, translating species or gene composition into microbiome functionality remains a challenge. Community ecology concepts such as the biodiversity–ecosystem functioning framework may help predict the assembly and function of plant-associated soil microbiomes. Higher diversity can increase the number and resilience of plant-beneficial functions that can be coexpressed and unlock the expression of plant-beneficial traits that are hard to obtain from any species in isolation. We combine well-established community ecology concepts with molecular microbiology into a workable framework that may enable us to predict and enhance soil microbiome functionality to promote robust plant growth in a global change context.
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Affiliation(s)
- Muhammad Saleem
- Department of Biological Sciences, Alabama State University, Montgomery, Alabama 36104, USA
| | - Jie Hu
- Institute of Environmental Biology, Ecology and Biodiversity, Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Alexandre Jousset
- Institute of Environmental Biology, Ecology and Biodiversity, Utrecht University, 3584 CH Utrecht, The Netherlands
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19
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Vyrides I, Rivett DW, Bruce KD, Lilley AK. Selection and assembly of indigenous bacteria and methanogens from spent metalworking fluids and their potential as a starting culture in a fluidized bed reactor. Microb Biotechnol 2019; 12:1302-1312. [PMID: 31328378 PMCID: PMC6801153 DOI: 10.1111/1751-7915.13448] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Revised: 05/20/2019] [Accepted: 05/20/2019] [Indexed: 11/28/2022] Open
Abstract
Waste metalworking fluids (MWFs) are highly biocidal resulting in real difficulties in the, otherwise favoured, bioremediation of these high chemical oxygen deman (COD) wastes anaerobically in bioreactors. We have shown, as a proof of concept, that it is possible to establish an anaerobic starter culture using strains isolated from spent MWFs which are capable of reducing COD or, most significantly, methanogenesis in this biocidal waste stream. Bacterial strains (n = 99) and archaeal methanogens (n = 28) were isolated from spent MWFs. The most common bacterial strains were Clostridium species (n = 45). All methanogens were identified as Methanosarcina mazei. Using a random partitions design (RPD) mesocosm experiment, we found that bacterial diversity and species-species interactions had significant effects on COD reduction but that bacterial composition did not. The RPD study showed similar effects on methanogenesis, except that composition was also significant. We identified bacterial species with positive and negative effects on methane production. A consortium of 16 bacterial species and three methanogens was used to initiate a fluidized bed bioreactor (FBR), in batch mode. COD reduction and methane production were variable, and the reactor was oscillated between continuous and batch feeds. In both microcosm and FBR experiments, periodic inconsistencies in bacterial reduction in fermentative products to formic and acetic acids were identified as a key issue.
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Affiliation(s)
- Ioannis Vyrides
- Molecular Microbiology Research LaboratoryPharmaceutical Science Research DivisionKing's College London150 Stamford Street, Franklin‐Wilkins BuildingLondonSE1 9NHUK
- Present address:
Department of Environmental Science and TechnologyCyprus University of Technology30 Archbishop Kyprianos3036LemesosCyprus
| | - Damian W. Rivett
- Division of Biology and Conservation EcologySchool of Science and the EnvironmentManchester Metropolitan UniversityManchesterUK
| | - Kenneth D. Bruce
- Molecular Microbiology Research LaboratoryPharmaceutical Science Research DivisionKing's College London150 Stamford Street, Franklin‐Wilkins BuildingLondonSE1 9NHUK
| | - Andrew K. Lilley
- Molecular Microbiology Research LaboratoryPharmaceutical Science Research DivisionKing's College London150 Stamford Street, Franklin‐Wilkins BuildingLondonSE1 9NHUK
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20
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Zemp DC, Gérard A, Hölscher D, Ammer C, Irawan B, Sundawati L, Teuscher M, Kreft H. Tree performance in a biodiversity enrichment experiment in an oil palm landscape. J Appl Ecol 2019. [DOI: 10.1111/1365-2664.13460] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Delphine Clara Zemp
- University of Goettingen, Biodiversity, Macroecology and Biogeography Göttingen Germany
| | - Anne Gérard
- University of Goettingen, Biodiversity, Macroecology and Biogeography Göttingen Germany
| | - Dirk Hölscher
- University of Goettingen, Tropical Silviculture and Forest Ecology Göttingen Germany
- University of Goettingen, Centre of Biodiversity and Sustainable Land Use Göttingen Germany
| | - Christian Ammer
- University of Goettingen, Centre of Biodiversity and Sustainable Land Use Göttingen Germany
- University of Goettingen, Silviculture and Forest Ecology of the Temperate Zones Göttingen Germany
| | | | - Leti Sundawati
- Department of Forest Management, Faculty of Forestry Bogor Agricultural University Bogor Indonesia
| | - Miriam Teuscher
- Department of Systemic Conservation Biology, J.F. Blumenbach Institute for Zoology and Anthropology University of Goettingen Göttingen Germany
- Senckenberg Gesellschaft für Naturforschung, Biodiversity and Climate Research Centre BiK‐F Frankfurt Germany
| | - Holger Kreft
- University of Goettingen, Biodiversity, Macroecology and Biogeography Göttingen Germany
- University of Goettingen, Centre of Biodiversity and Sustainable Land Use Göttingen Germany
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21
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Willow Short-Rotation Coppice as Model System for Exploring Ecological Theory on Biodiversity–Ecosystem Function. DIVERSITY 2019. [DOI: 10.3390/d11080125] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Plantations of willow (Salix spp.) are today grown as short-rotation coppice (SRC) for the sustainable production of biomass. While developing these production systems in the past, much ecological knowledge on plant–plant, plant–environment and trophic interactions has been generated. This knowledge can contribute to the further development of biodiversity–ecosystem function (BEF) theory, which frequently lacks a sound understanding of the complex mechanisms behind the observed patterns of diversity-productivity relationships. Thus, willow SRC systems are suitable models to explore BEF theory; they are simple enough to allow the study of the complex ecological mechanisms involved and they have many similarities to grassland systems in which much of recent BEF theory development has been achieved. This paper briefly reviews the current observational and mechanistic knowledge on diversity–productivity relationships in willow SRC, as well as the most important above- and below-ground trophic interactions that are likely to affect them. If the available knowledge is integrated and combined with further experimental work targeting mechanisms behind patterns, research on willow SRC as a model offers a great opportunity for filling the gaps in the understanding what presently hampers the development of predictive BEF theory.
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22
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Brophy C, Dooley Á, Kirwan L, Finn JA, McDonnell J, Bell T, Cadotte MW, Connolly J. Biodiversity and ecosystem function: making sense of numerous species interactions in multi-species communities. Ecology 2018; 98:1771-1778. [PMID: 28444961 DOI: 10.1002/ecy.1872] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Revised: 03/04/2017] [Accepted: 03/22/2017] [Indexed: 11/09/2022]
Abstract
Understanding the biodiversity and ecosystem function relationship can be challenging in species-rich ecosystems. Traditionally, species richness has been relied on heavily to explain changes in ecosystem function across diversity gradients. Diversity-Interactions models can test how ecosystem function is affected by species identity, species interactions, and evenness, in addition to richness. However, in a species-rich system, there may be too many species interactions to allow estimation of each coefficient, and if all interaction coefficients are estimable, they may be devoid of any sensible biological meaning. Parsimonious descriptions using constraints among interaction coefficients have been developed but important variability may still remain unexplained. Here, we extend Diversity-Interactions models to describe the effects of diversity on ecosystem function using a combination of fixed coefficients and random effects. Our approach provides improved standard errors for testing fixed coefficients and incorporates lack-of-fit tests for diversity effects. We illustrate our methods using data from a grassland and a microbial experiment. Our framework considerably reduces the complexities associated with understanding how species interactions contribute to ecosystem function in species-rich ecosystems.
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Affiliation(s)
- Caroline Brophy
- Department of Mathematics and Statistics, Maynooth University, Maynooth, Ireland
| | - Áine Dooley
- Department of Mathematics and Statistics, Maynooth University, Maynooth, Ireland
| | - Laura Kirwan
- UCD School of Agriculture and Food Science, University College Dublin, Dublin 4, Ireland
| | - John A Finn
- Teagasc Environment Research Centre, Johnstown Castle, Ireland
| | - Jack McDonnell
- Department of Mathematics and Statistics, Maynooth University, Maynooth, Ireland.,Animal and Grassland Research and Innovation Centre, Fermoy, Ireland
| | - Thomas Bell
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, SL5 7PY, United Kingdom
| | - Marc W Cadotte
- Department of Biological Sciences, University of Toronto-Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
| | - John Connolly
- School of Mathematics and Statistics, Ecological and Environmental Modelling Group, University College Dublin, Dublin 4, Ireland
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Rivett DW, Lilley AK, Connett GJ, Carroll MP, Legg JP, Bruce KD. Contributions of Composition and Interactions to Bacterial Respiration Are Reliant on the Phylogenetic Similarity of the Measured Community. MICROBIAL ECOLOGY 2017; 74:757-760. [PMID: 28451742 PMCID: PMC5579169 DOI: 10.1007/s00248-017-0982-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Accepted: 04/05/2017] [Indexed: 06/07/2023]
Abstract
Bacterial diversity underpins many ecosystem functions; however, the impact of within-species variation on the relationship between diversity and function remains unclear. Processes involving strain differentiation, such as niche radiation, are often overlooked in studies that focus on phylogenetic variation. This study used bacterial isolates assembled in two comparable microcosm experiments to test how species variation affected ecosystem function. We compared the relationship between diversity and activity (CO2 production) in increasingly diverse multispecies microcosms and with multiple ecotypes of a single species. The bacteria used were isolated from a low-diversity environment and are species of potential clinical significance such as Pseudomonas aeruginosa. All isolates were profiled for single carbon source utilisation. These data showed an increased breadth of resource use in the multiple ecotypes when compared to the mixed-species. The study observed significantly increasing respiration in more complex mixed-species assemblages, which was not observed when ecotypes of a single species were combined. We further demonstrate that the variation observed in the bacterial activity was due to the roles of each of the constituent isolates; between different species, the interactions between the isolates drove the variation in activity, whilst in single species, assemblage variation was due to which isolates were present. We conclude that both between- and within-species variations play different roles in community function, although through different mechanisms, and should be included in models of changing diversity and ecosystem functioning.
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Affiliation(s)
- Damian W Rivett
- Institute of Pharmaceutical Science, King's College London, Franklin-Wilkins Building, London, UK
- Division of Ecology and Evolution, Imperial College London, Silwood Park Campus, Ascot, UK
| | - Andrew K Lilley
- Institute of Pharmaceutical Science, King's College London, Franklin-Wilkins Building, London, UK.
| | - Gary J Connett
- UK National Institute for Health Research, Southampton Respiratory Biomedical Research Unit, University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | - Mary P Carroll
- UK National Institute for Health Research, Southampton Respiratory Biomedical Research Unit, University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | - Julian P Legg
- UK National Institute for Health Research, Southampton Respiratory Biomedical Research Unit, University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | - Kenneth D Bruce
- Institute of Pharmaceutical Science, King's College London, Franklin-Wilkins Building, London, UK
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Hietala DC, Koss CK, Narwani A, Lashaway AR, Godwin CM, Cardinale BJ, Savage PE. Influence of biodiversity, biochemical composition, and species identity on the quality of biomass and biocrude oil produced via hydrothermal liquefaction. ALGAL RES 2017. [DOI: 10.1016/j.algal.2017.07.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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25
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Defining the functional traits that drive bacterial decomposer community productivity. ISME JOURNAL 2017; 11:1680-1687. [PMID: 28323280 PMCID: PMC5480597 DOI: 10.1038/ismej.2017.22] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Revised: 12/21/2016] [Accepted: 01/22/2017] [Indexed: 12/20/2022]
Abstract
Microbial communities are essential to a wide range of ecologically and industrially important processes. To control or predict how these communities function, we require a better understanding of the factors which influence microbial community productivity. Here, we combine functional resource use assays with a biodiversity–ecosystem functioning (BEF) experiment to determine whether the functional traits of constituent species can be used to predict community productivity. We quantified the abilities of 12 bacterial species to metabolise components of lignocellulose and then assembled these species into communities of varying diversity and composition to measure their productivity growing on lignocellulose, a complex natural substrate. A positive relationship between diversity and community productivity was caused by a selection effect whereby more diverse communities were more likely to contain two species that significantly improved community productivity. Analysis of functional traits revealed that the observed selection effect was primarily driven by the abilities of these species to degrade β-glucan. Our results indicate that by identifying the key functional traits underlying microbial community productivity we could improve industrial bioprocessing of complex natural substrates.
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26
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Sandau N, Fabian Y, Bruggisser OT, Rohr RP, Naisbit RE, Kehrli P, Aebi A, Bersier L. The relative contributions of species richness and species composition to ecosystem functioning. OIKOS 2016. [DOI: 10.1111/oik.03901] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nadine Sandau
- Unit of Ecology and Evolution Univ. of Fribourg Chemin du Musée 10 VH‐1700 Fribourg Switzerland
- Ecosystem Dynamics, Swiss Federal Inst. for Forest, Snow and Landscape Research WSL Birmensdorf Switzerland
| | - Yvonne Fabian
- Unit of Ecology and Evolution Univ. of Fribourg Chemin du Musée 10 VH‐1700 Fribourg Switzerland
| | - Odile T. Bruggisser
- Unit of Ecology and Evolution Univ. of Fribourg Chemin du Musée 10 VH‐1700 Fribourg Switzerland
| | - Rudolf P. Rohr
- Unit of Ecology and Evolution Univ. of Fribourg Chemin du Musée 10 VH‐1700 Fribourg Switzerland
| | - Russell E. Naisbit
- Unit of Ecology and Evolution Univ. of Fribourg Chemin du Musée 10 VH‐1700 Fribourg Switzerland
| | - Patrik Kehrli
- Station de recherche Agroscope Changins – Wädenswil ACW Nyon Switzerland
| | - Alexandre Aebi
- Laboratory of Soil Biology Univ. of Neuchâtel Neuchâtel Switzerland
| | - Louis‐Félix Bersier
- Unit of Ecology and Evolution Univ. of Fribourg Chemin du Musée 10 VH‐1700 Fribourg Switzerland
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27
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Teuscher M, Gérard A, Brose U, Buchori D, Clough Y, Ehbrecht M, Hölscher D, Irawan B, Sundawati L, Wollni M, Kreft H. Experimental Biodiversity Enrichment in Oil-Palm-Dominated Landscapes in Indonesia. FRONTIERS IN PLANT SCIENCE 2016; 7:1538. [PMID: 27799935 PMCID: PMC5065973 DOI: 10.3389/fpls.2016.01538] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Accepted: 09/29/2016] [Indexed: 05/26/2023]
Abstract
Tropical biodiversity is threatened by the expansion of oil-palm plantations. Reduced-impact farming systems such as agroforests, have been proposed to increase biodiversity and ecosystem functioning. In regions where oil-palm plantations already dominate the landscape, this increase can only be achieved through systematic ecological restoration. However, our knowledge about the underlying ecological and socio-economic processes, constraints, and trade-offs of ecological restoration in oil-palm landscapes is very limited. To bridge this gap, we established a long-term biodiversity enrichment experiment. We established experimental tree islands in a conventional oil-palm plantation and systematically varied plot size, tree diversity, and tree species composition. Here, we describe the rationale and the design of the experiment, the ecosystem variables (soil, topography, canopy openness) and biotic characteristics (associated vegetation, invertebrates, birds) of the experimental site prior to the establishment of the experiment, and initial experimental effects on the fauna. Already one year after establishment of the experiment, tree plantings had an overall positive effect on the bird and invertebrate communities at the plantation scale. The diversity and abundance of invertebrates was positively affected by the size of the tree islands. Based on these results, we expect a further increase of biodiversity and associated ecological functions in the future. The long-term interdisciplinary monitoring of ecosystem variables, flora, fauna, and socio-economic aspects will allow us to evaluate the suitability of tree islands as a restoration measure. Thereof, guidelines for ecologically improved and socio-economically viable restoration and management concepts could be developed.
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Affiliation(s)
- Miriam Teuscher
- Department of Systemic Conservation Biology, J.F. Blumenbach Institute for Zoology and Anthropology, Georg-August-University GöttingenGöttingen, Germany
| | - Anne Gérard
- Biodiversity, Macroecology and Biogeography, Georg-August-University GöttingenGöttingen, Germany
| | - Ulrich Brose
- German Centre for Integrative Biodiversity Research Halle-Jena-LeipzigLeipzig, Germany
- Institute of Ecology, Friedrich Schiller University JenaJena, Germany
| | - Damayanti Buchori
- Department of Plant Protection, Bogor Agricultural UniversityBogor, Indonesia
| | - Yann Clough
- Centre for Environmental and Climate Research, Lund UniversityLund, Sweden
- Department of Crop Sciences, Agroecology, Georg-August-University GöttingenGöttingen, Germany
| | - Martin Ehbrecht
- Silviculture and Forest Ecology of the Temperate Zones, Georg-August-University GöttingenGöttingen, Germany
| | - Dirk Hölscher
- Tropical Silviculture and Forest Ecology, Georg-August-University GöttingenGöttingen, Germany
| | - Bambang Irawan
- Faculty of Forestry, University of JambiJambi, Indonesia
| | - Leti Sundawati
- Department of Forest Management, Faculty of Forestry, Bogor Agricultural UniversityBogor, Indonesia
| | - Meike Wollni
- Department of Agricultural Economics and Rural Development, Georg-August-University GöttingenGöttingen, Germany
| | - Holger Kreft
- Biodiversity, Macroecology and Biogeography, Georg-August-University GöttingenGöttingen, Germany
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28
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Armitage DW. Time-variant species pools shape competitive dynamics and biodiversity-ecosystem function relationships. Proc Biol Sci 2016; 283:rspb.2016.1437. [PMID: 27629035 DOI: 10.1098/rspb.2016.1437] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Accepted: 08/23/2016] [Indexed: 11/12/2022] Open
Abstract
Biodiversity-ecosystem function (BEF) experiments routinely employ common garden designs, drawing samples from a local biota. The communities from which taxa are sampled may not, however, be at equilibrium. To test for temporal changes in BEF relationships, I assembled the pools of aquatic bacterial strains isolated at different time points from leaves on the pitcher plant Darlingtonia californica in order to evaluate the strength, direction and drivers of the BEF relationship across a natural host-associated successional gradient. I constructed experimental communities using bacterial isolates from each time point and measured their respiration rates and competitive interactions. Communities assembled from mid-successional species pools showed the strongest positive relationships between community richness and respiration rates, driven primarily by linear additivity among isolates. Diffuse competition was common among all communities but greatest within mid-successional isolates. These results demonstrate the dependence of the BEF relationship on the temporal dynamics of the local species pool, implying that ecosystems may respond differently to the addition or removal of taxa at different points in time during succession.
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Affiliation(s)
- David W Armitage
- Department of Integrative Biology, University of California Berkeley, 3040 Valley Life Sciences Building, Berkeley, CA 94720-3140, USA Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Science Center, Notre Dame, IN 46556, USA
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29
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Fiegna F, Scheuerl T, Moreno-Letelier A, Bell T, Barraclough TG. Saturating effects of species diversity on life-history evolution in bacteria. Proc Biol Sci 2016; 282:rspb.2015.1794. [PMID: 26378213 PMCID: PMC4614762 DOI: 10.1098/rspb.2015.1794] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Species interactions can play a major role in shaping evolution in new environments. In theory, species interactions can either stimulate evolution by promoting coevolution or inhibit evolution by constraining ecological opportunity. The relative strength of these effects should vary as species richness increases, and yet there has been little evidence for evolution of component species in communities. We evolved bacterial microcosms containing between 1 and 12 species in three different environments. Growth rates and yields of isolates that evolved in communities were lower than those that evolved in monocultures, consistent with recent theory that competition constrains species to specialize on narrower sets of resources. This effect saturated or reversed at higher levels of richness, consistent with theory that directional effects of species interactions should weaken in more diverse communities. Species varied considerably, however, in their responses to both environment and richness levels. Mechanistic models and experiments are now needed to understand and predict joint evolutionary dynamics of species in diverse communities.
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Affiliation(s)
- Francesca Fiegna
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire SL5 7PY, UK
| | - Thomas Scheuerl
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire SL5 7PY, UK
| | - Alejandra Moreno-Letelier
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire SL5 7PY, UK
| | - Thomas Bell
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire SL5 7PY, UK
| | - Timothy G Barraclough
- Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, Berkshire SL5 7PY, UK
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30
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Latz E, Eisenhauer N, Rall BC, Scheu S, Jousset A. Unravelling Linkages between Plant Community Composition and the Pathogen-Suppressive Potential of Soils. Sci Rep 2016; 6:23584. [PMID: 27021053 PMCID: PMC4810420 DOI: 10.1038/srep23584] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2015] [Accepted: 03/07/2016] [Indexed: 11/16/2022] Open
Abstract
Plant diseases cause dramatic yield losses worldwide. Current disease control practices can be deleterious for the environment and human health, calling for alternative and sustainable management regimes. Soils harbour microorganisms that can efficiently suppress pathogens. Uncovering mediators driving their functioning in the field still remains challenging, but represents an essential step in order to develop strategies for increased soil health. We set up plant communities of varying richness to experimentally test the potential of soils differing in plant community history to suppress the pathogen Rhizoctonia solani. The results indicate that plant communities shape soil-disease suppression via changes in abiotic soil properties and the abundance of bacterial groups including species of the genera Actinomyces, Bacillus and Pseudomonas. Further, the results suggest that pairwise interactions between specific plant species strongly affect soil suppressiveness. Using structural equation modelling, we provide a pathway orientated framework showing how the complex interactions between plants, soil and microorganisms jointly shape soil suppressiveness. Our results stress the importance of plant community composition as a determinant of soil functioning, such as the disease suppressive potential of soils.
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Affiliation(s)
- Ellen Latz
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Straße 28,37073 Göttingen, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Ecology, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Johannisallee 21, 04103 Leipzig, Germany
| | - Björn Christian Rall
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Straße 28,37073 Göttingen, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Ecology, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Straße 28,37073 Göttingen, Germany
| | - Alexandre Jousset
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Straße 28,37073 Göttingen, Germany
- Institute for Environmental Biology, Ecology and Biodiversity, University of Utrecht, Padualaan 8, 3584CH Utrecht, The Netherlands
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31
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Rivett DW, Scheuerl T, Culbert CT, Mombrikotb SB, Johnstone E, Barraclough TG, Bell T. Resource-dependent attenuation of species interactions during bacterial succession. ISME JOURNAL 2016; 10:2259-68. [PMID: 26894447 PMCID: PMC4989303 DOI: 10.1038/ismej.2016.11] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Revised: 12/11/2015] [Accepted: 12/30/2015] [Indexed: 02/06/2023]
Abstract
Bacterial communities are vital for many economically and ecologically important processes. The role of bacterial community composition in determining ecosystem functioning depends critically on interactions among bacterial taxa. Several studies have shown that, despite a predominance of negative interactions in communities, bacteria are able to display positive interactions given the appropriate evolutionary or ecological conditions. We were interested in how interspecific interactions develop over time in a naturalistic setting of low resource supply rates. We assembled aquatic bacterial communities in microcosms and assayed the productivity (respiration and growth) and substrate degradation while tracking community composition. The results demonstrated that while bacterial communities displayed strongly negative interactions during the early phase of colonisation and acclimatisation to novel biotic and abiotic factors, this antagonism declined over time towards a more neutral state. This was associated with a shift from use of labile substrates in early succession to use of recalcitrant substrates later in succession, confirming a crucial role of resource dynamics in linking interspecific interactions with ecosystem functioning.
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Affiliation(s)
- Damian W Rivett
- Department of Life Sciences, Imperial College London, Ascot, Berkshire, UK
| | - Thomas Scheuerl
- Department of Life Sciences, Imperial College London, Ascot, Berkshire, UK
| | | | | | - Emma Johnstone
- Department of Life Sciences, Imperial College London, Ascot, Berkshire, UK
| | | | - Thomas Bell
- Department of Life Sciences, Imperial College London, Ascot, Berkshire, UK
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32
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Complementarity among plant growth promoting traits in rhizospheric bacterial communities promotes plant growth. Sci Rep 2015; 5:15500. [PMID: 26503744 PMCID: PMC4621411 DOI: 10.1038/srep15500] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Accepted: 09/22/2015] [Indexed: 12/27/2022] Open
Abstract
An assessment of roles of rhizospheric microbial diversity in plant growth is helpful in understanding plant-microbe interactions. Using random combinations of rhizospheric bacterial species at different richness levels, we analysed the contribution of species richness, compositions, interactions and identity on soil microbial respiration and plant biomass. We showed that bacterial inoculation in plant rhizosphere enhanced microbial respiration and plant biomass with complementary relationships among bacterial species. Plant growth was found to increase linearly with inoculation of rhizospheric bacterial communities with increasing levels of species or plant growth promoting trait diversity. However, inoculation of diverse bacterial communities having single plant growth promoting trait, i.e., nitrogen fixation could not enhance plant growth over inoculation of single bacteria. Our results indicate that bacterial diversity in rhizosphere affect ecosystem functioning through complementary relationship among plant growth promoting traits and may play significant roles in delivering microbial services to plants.
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33
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Mallon CA, Poly F, Le Roux X, Marring I, van Elsas JD, Salles JF. Resource pulses can alleviate the biodiversity-invasion relationship in soil microbial communities. Ecology 2015; 96:915-26. [PMID: 26230013 DOI: 10.1890/14-1001.1] [Citation(s) in RCA: 117] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The roles of species richness, resource use, and resource availability are central to many hypotheses explaining the diversity-invasion phenomenon but are generally not investigated together. Here, we created a large diversity gradient of soil microbial communities by either assembling communities of pure bacterial strains or removing the diversity of a natural soil. Using data on the resource-use capacities of the soil communities and an invader that were gathered from 71 carbon sources, we quantified the niches available to both constituents by using the metrics community niche and remaining niche available to the invader. A strong positive relationship between species richness and community niche across both experiments indicated the presence of resource complementarity. Moreover, community niche and the remaining niche available to the invader predicted invader abundance well. This suggested that increased competition in communities of higher diversity limits community invasibility and underscored the importance of resource availability as a key mechanism through which diversity hinders invasions. As a proof of principle, we subjected selected invaded communities to a resource pulse, which progressively uncoupled the link between soil microbial diversity and invasion and allowed the invader to rebound after nearly being eliminated in some communities. Our results thus show that (1) resource competition suppresses invasion, (2) biodiversity increases resource competition and decreases invasion through niche preemption, and (3) resource pulses that cannot be fully used, even by diverse communities, are favorable to invasion.
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34
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Korell L, Schmidt R, Bruelheide H, Hensen I, Auge H. Mechanisms driving diversity-productivity relationships differ between exotic and native communities and are affected by gastropod herbivory. Oecologia 2015; 180:1025-36. [PMID: 26235964 PMCID: PMC4819496 DOI: 10.1007/s00442-015-3395-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 07/09/2015] [Indexed: 11/29/2022]
Abstract
Biodiversity experiments have shown that productivity usually increases with plant species richness. However, most of those studies disregarded the importance of trophic interactions to the diversity-productivity relationship, and focused on the loss of native species while ignoring invasions by exotic species. Yet, as functional complementarity and the impact of plant antagonists are likely to differ between native and exotic communities, the diversity-productivity relationship may change when native communities are invaded by exotic species. We conducted a mesocosm experiment to test how diversity effects, evenness, and productivity differed between exotic and native assemblages of grassland plants, and how these communities were influenced by slug herbivory. In line with other experiments, we found higher productivity in exotic than in native communities. However, different mechanisms (complementarity vs. selection effect) contributed to the positive diversity-productivity relationships in exotic vs. native communities. Against expectations, native communities showed much lower evenness and a greater selection effect, suggesting that competitive dominance among native species may be even stronger than among exotic species. Slug herbivory decreased productivity independently of species origin and species diversity. However, exotic communities showed a threefold higher complementarity effect than native communities in the absence of slugs, which was mainly driven by differences in the responses of native and exotic legumes and nonleguminous herbs. Our results imply that underlying mechanisms for the positive diversity-productivity relationship differ between native and exotic communities in the early stages of community development, and that differential responses of plant functional groups to generalist herbivory can contribute to this pattern.
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Affiliation(s)
- Lotte Korell
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany. .,Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany. .,Institute of Biology, Philipps-University Marburg, Karl-von-Frisch-Straße 8, 35043, Marburg, Germany.
| | - Robin Schmidt
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany.,Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Helge Bruelheide
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Isabell Hensen
- Institute of Biology, Am Kirchtor 1, 06108, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Harald Auge
- Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
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35
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Fung T, Farnsworth KD, Reid DG, Rossberg AG. Impact of biodiversity loss on production in complex marine food webs mitigated by prey-release. Nat Commun 2015; 6:6657. [PMID: 25799523 PMCID: PMC4382996 DOI: 10.1038/ncomms7657] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Accepted: 02/17/2015] [Indexed: 11/09/2022] Open
Abstract
Public concern over biodiversity loss is often rationalized as a threat to ecosystem functioning, but biodiversity-ecosystem functioning (BEF) relations are hard to empirically quantify at large scales. We use a realistic marine food-web model, resolving species over five trophic levels, to study how total fish production changes with species richness. This complex model predicts that BEF relations, on average, follow simple Michaelis-Menten curves when species are randomly deleted. These are shaped mainly by release of fish from predation, rather than the release from competition expected from simpler communities. Ordering species deletions by decreasing body mass or trophic level, representing 'fishing down the food web', accentuates prey-release effects and results in unimodal relationships. In contrast, simultaneous unselective harvesting diminishes these effects and produces an almost linear BEF relation, with maximum multispecies fisheries yield at ≈40% of initial species richness. These findings have important implications for the valuation of marine biodiversity.
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Affiliation(s)
- Tak Fung
- National University of Singapore, Department of Biological Sciences, 14 Science Drive 4, Singapore 117543, Singapore
| | - Keith D Farnsworth
- Queen's University Belfast, School of Biological Sciences, Belfast BT9 7BL, UK
| | - David G Reid
- Fisheries Science Services, Marine Institute, Rinville, Oranmore, County Galway, Ireland
| | - Axel G Rossberg
- 1] Queen's University Belfast, School of Biological Sciences, Belfast BT9 7BL, UK [2] Centre for Environment, Fisheries and Aquaculture Science (Cefas), Suffolk NR33 0HT, UK
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36
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Latz E, Eisenhauer N, Scheu S, Jousset A. Plant identity drives the expression of biocontrol factors in a rhizosphere bacterium across a plant diversity gradient. Funct Ecol 2015. [DOI: 10.1111/1365-2435.12417] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Ellen Latz
- J.F. Blumenbach Institute of Zoology and Anthropology Georg August University Göttingen Berliner Straβe 2837073 Göttingen Germany
| | - Nico Eisenhauer
- Experimental Interaction Ecology German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Deutscher Platz 5e04103 Leipzig Germany
- Institute for Biology University of Leipzig Johannisallee 2104103 Leipzig Germany
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology Georg August University Göttingen Berliner Straβe 2837073 Göttingen Germany
| | - Alexandre Jousset
- Institute for Environmental Biology, Ecology and Biodiversity University of Utrecht Padualaan 83584 CH Utrecht The Netherlands
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37
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Evolution of species interactions determines microbial community productivity in new environments. ISME JOURNAL 2014; 9:1235-45. [PMID: 25387206 PMCID: PMC4409166 DOI: 10.1038/ismej.2014.215] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2014] [Revised: 09/29/2014] [Accepted: 10/01/2014] [Indexed: 11/08/2022]
Abstract
Diversity generally increases ecosystem productivity over short timescales. Over longer timescales, both ecological and evolutionary responses to new environments could alter productivity and diversity–productivity relationships. In turn, diversity might affect how component species adapt to new conditions. We tested these ideas by culturing artificial microbial communities containing between 1 and 12 species in three different environments for ∼60 generations. The relationship between community yields and diversity became steeper over time in one environment. This occurred despite a general tendency for the separate yields of isolates of constituent species to be lower at the end if they had evolved in a more diverse community. Statistical comparisons of community and species yields showed that species interactions had evolved to be less negative over time, especially in more diverse communities. Diversity and evolution therefore interacted to enhance community productivity in a new environment.
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Sandau N, Rohr RP, Naisbit RE, Fabian Y, Bruggisser OT, Kehrli P, Aebi A, Bersier LF. Including community composition in biodiversity-productivity models. Methods Ecol Evol 2014. [DOI: 10.1111/2041-210x.12215] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Nadine Sandau
- Department of Biology; University of Fribourg; Chemin du Musée 10 1700 Fribourg Switzerland
| | - Rudolf P. Rohr
- Department of Biology; University of Fribourg; Chemin du Musée 10 1700 Fribourg Switzerland
- Integrative Ecology Group; Estacion Biologica de Doñana; EBD-CSIC 41092 Sevilla Spain
| | - Russell E. Naisbit
- Department of Biology; University of Fribourg; Chemin du Musée 10 1700 Fribourg Switzerland
| | - Yvonne Fabian
- Department of Biology; University of Fribourg; Chemin du Musée 10 1700 Fribourg Switzerland
| | - Odile T. Bruggisser
- Department of Biology; University of Fribourg; Chemin du Musée 10 1700 Fribourg Switzerland
| | - Patrik Kehrli
- Station de recherche Agroscope Changins - Wädenswil ACW; 1260 Nyon Switzerland
| | - Alexandre Aebi
- Laboratory of Soil Biology; University of Neuchâtel; Emile-Argand 11 2000 Neuchâtel Switzerland
| | - Louis-Félix Bersier
- Department of Biology; University of Fribourg; Chemin du Musée 10 1700 Fribourg Switzerland
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39
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Awasthi A, Singh M, Soni SK, Singh R, Kalra A. Biodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations. ISME JOURNAL 2014; 8:2445-52. [PMID: 24926862 DOI: 10.1038/ismej.2014.91] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Revised: 04/22/2014] [Accepted: 04/27/2014] [Indexed: 12/17/2022]
Abstract
Anthropogenic disturbances are detrimental to the functioning and stability of natural ecosystems. Critical ecosystem processes driven by microbial communities are subjected to these disturbances. Here, we examine the stabilizing role of bacterial diversity on community biomass in the presence of abiotic perturbations such as addition of heavy metals, NaCl and warming. Bacterial communities with a diversity gradient of 1-12 species were subjected to the different treatments, and community biomass (OD600) was measured after 24 h. We found that initial species richness and phylogenetic structure impact the biomass of communities. Under abiotic perturbations, the presence of tolerant species in community largely contributed in community biomass production. Bacterial diversity stabilized the biomass across the treatments, and differential response of bacterial species to different perturbations was the key reason behind these effects. The results suggest that biodiversity is crucial for maintaining the stability of ecosystem functioning and acts as ecological insurance under abiotic perturbations. Biodiversity in natural ecosystems may also uphold the ecosystem functioning under anthropogenic disturbance.
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Affiliation(s)
- Ashutosh Awasthi
- Department of Microbial Technology, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
| | - Mangal Singh
- Department of Microbial Technology, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
| | - Sumit K Soni
- Department of Microbial Technology, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
| | - Rakshapal Singh
- Department of Microbial Technology, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
| | - Alok Kalra
- Department of Microbial Technology, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
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40
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E. Benjamin F, R. Reilly J, Winfree R. Pollinator body size mediates the scale at which land use drives crop pollination services. J Appl Ecol 2014. [DOI: 10.1111/1365-2664.12198] [Citation(s) in RCA: 105] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Faye E. Benjamin
- Department of Ecology, Evolution and Natural Resources, Rutgers; The State University of New Jersey; New Brunswick NJ 08901 USA
| | - James R. Reilly
- Department of Ecology, Evolution and Natural Resources, Rutgers; The State University of New Jersey; New Brunswick NJ 08901 USA
| | - Rachael Winfree
- Department of Ecology, Evolution and Natural Resources, Rutgers; The State University of New Jersey; New Brunswick NJ 08901 USA
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41
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Bailey R, Reiss J. Design and analysis of experiments testing for biodiversity effects in ecology. J Stat Plan Inference 2014. [DOI: 10.1016/j.jspi.2012.09.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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42
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Fründ J, Dormann CF, Holzschuh A, Tscharntke T. Bee diversity effects on pollination depend on functional complementarity and niche shifts. Ecology 2013; 94:2042-54. [PMID: 24279275 DOI: 10.1890/12-1620.1] [Citation(s) in RCA: 147] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Biodiversity is important for many ecosystem processes. Global declines in pollinator diversity and abundance have been recognized, raising concerns about a pollination crisis of crops and wild plants. However, experimental evidence for effects of pollinator species diversity on plant reproduction is extremely scarce. We established communities with 1-5 bee species to test how seed production of a plant community is determined by bee diversity. Higher bee diversity resulted in higher seed production, but the strongest difference was observed for one compared to more than one bee species. Functional complementarity among bee species had a far higher explanatory power than bee diversity, suggesting that additional bee species only benefit pollination when they increase coverage of functional niches. In our experiment, complementarity was driven by differences in flower and temperature preferences. Interspecific interactions among bee species contributed to realized functional complementarity, as bees reduced interspecific overlap by shifting to alternative flowers in the presence of other species. This increased the number of plant species visited by a bee community and demonstrates a new mechanism for a biodiversity-function relationship ("interactive complementarity"). In conclusion, our results highlight both the importance of bee functional diversity for the reproduction of plant communities and the need to identify complementarity traits for accurately predicting pollination services by different bee communities.
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Affiliation(s)
- Jochen Fründ
- Agroecology, Department of Crop Sciences, Georg-August-University Göttingen, Grisebachstrasse 3, 37077 Göttingen, Germany.
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43
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Bruelheide H, Nadrowski K, Assmann T, Bauhus J, Both S, Buscot F, Chen X, Ding B, Durka W, Erfmeier A, Gutknecht JLM, Guo D, Guo L, Härdtle W, He J, Klein A, Kühn P, Liang Y, Liu X, Michalski S, Niklaus PA, Pei K, Scherer‐Lorenzen M, Scholten T, Schuldt A, Seidler G, Trogisch S, Oheimb G, Welk E, Wirth C, Wubet T, Yang X, Yu M, Zhang S, Zhou H, Fischer M, Ma K, Schmid B. Designing forest biodiversity experiments: general considerations illustrated by a new large experiment in subtropical
C
hina. Methods Ecol Evol 2013. [DOI: 10.1111/2041-210x.12126] [Citation(s) in RCA: 181] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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44
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Hantsch L, Braun U, Scherer-Lorenzen M, Bruelheide H. Species richness and species identity effects on occurrence of foliar fungal pathogens in a tree diversity experiment. Ecosphere 2013. [DOI: 10.1890/es13-00103.1] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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45
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Harvey E, Séguin A, Nozais C, Archambault P, Gravel D. Identity effects dominate the impacts of multiple species extinctions on the functioning of complex food webs. Ecology 2013; 94:169-79. [PMID: 23600251 DOI: 10.1890/12-0414.1] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
Understanding the impacts of species extinctions on the functioning of food webs is a challenging task because of the complexity of ecological interactions. We report the impacts of experimental species extinctions on the functioning of two food webs of freshwater and marine systems. We used a linear model to partition the variance among the multiple components of the diversity effect (linear group richness, nonlinear group richness, and identity). The identity of each functional group was the best explaining variable of ecosystem functioning for both systems. We assessed the contribution of each functional group in multifunctional space and found that, although the effect of functional group varied across ecosystem functions, some functional groups shared common effects on functions. This study is the first experimental demonstration that functional identity dominates the effects of extinctions on ecosystem functioning, suggesting that generalizations are possible despite the inherent complexity of interactions.
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Affiliation(s)
- Eric Harvey
- Canada Research Chair in Continental Ecosystem Ecology, Université du Québec a Rimouski, Rimouski, Quebec G5L 3A1, Canada.
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46
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Schneider FD, Brose U. Beyond diversity: how nested predator effects control ecosystem functions. J Anim Ecol 2012; 82:64-71. [PMID: 23173560 DOI: 10.1111/1365-2656.12010] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2012] [Accepted: 09/10/2012] [Indexed: 11/28/2022]
Abstract
The global decline in biodiversity is especially evident in higher trophic levels as predators display higher sensitivity to environmental change than organisms from lower trophic levels. This is even more alarming given the paucity of knowledge about the role of individual predator species in sustaining ecosystem functioning. The effect of predator diversity on lower trophic level prey is often driven by the increasing chance of including the most influential species. Furthermore, intraguild predation can cause trophic cascades with net positive effects on basal prey. As a consequence, the effects of losing a predator species appear to be idiosyncratic and it becomes unpredictable how the community's net effect on lower trophic levels changes when species number is declining. We performed a full factorial microcosm experiment with litter layer arthropods to measure the effects of predator diversity and context-dependent identity effects on a detritivore population and microbial biomass. We show that major parts of the observed diversity effect can be assigned to the increasing likelihood of including the most influential predator. Further, the presence of a second predator feeding on the first predator dampens this dominant effect. Including this intraguild predator on top of the first predator is more likely with increasing predator diversity as well. Thus, the overall pattern can be explained by a second identity effect, which is nested into the first. When losing a predator from the community, the response of the lower trophic level is highly dependent on the remaining predator species. We mechanistically explain the net effects of the predator community on lower trophic levels by nested effects of predator identities. These identity effects become predictable when taking the species' body masses into account. This provides a new mechanistic perspective describing ecosystem functioning as a consequence of species composition and yields an understanding beyond simple effects of biodiversity.
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Affiliation(s)
- Florian Dirk Schneider
- J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Göttingen, Berliner Str. 28, 37073, Göttingen, Germany
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47
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Foster KR, Bell T. Competition, not cooperation, dominates interactions among culturable microbial species. Curr Biol 2012; 22:1845-50. [PMID: 22959348 DOI: 10.1016/j.cub.2012.08.005] [Citation(s) in RCA: 391] [Impact Index Per Article: 32.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2012] [Revised: 07/06/2012] [Accepted: 08/01/2012] [Indexed: 10/27/2022]
Abstract
Microbial cells secrete numerous enzymes, scavenging molecules, and signals that can promote the growth and survival of other cells around them [1-4]. This observation is consistent with the evolution of cooperation within species [5], and there is now an increasing emphasis on the importance of cooperation between different microbial species [4, 6]. We lack, however, a systematic test of the importance of mutually positive interactions between different species, which is vital for assessing the commonness and importance of cooperative evolution in natural communities. Here, we study the extent of mutually positive interaction among bacterial strains isolated from a common aquatic environment. Using data collected from two independent experiments evaluating community productivity across diversity gradients, we show that (1) in pairwise species combinations, the great majority of interactions are net negative and (2) there is no evidence that strong higher-order positive effects arise when more than two species are mixed together. Our data do not exclude the possibility of positive effects in one direction where one species gains at the expense of another, i.e., predator-prey-like interactions. However, these do not constitute cooperation and our analysis suggests that the typical result of adaptation to other microbial species will be competitive, rather than cooperative, phenotypes.
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Affiliation(s)
- Kevin R Foster
- Department of Zoology and Oxford Centre for Integrative Systems Biology, University of Oxford, Oxford OX1 3PS, UK.
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48
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Langenheder S, Bulling MT, Prosser JI, Solan M. Role of functionally dominant species in varying environmental regimes: evidence for the performance-enhancing effect of biodiversity. BMC Ecol 2012; 12:14. [PMID: 22846071 PMCID: PMC3480835 DOI: 10.1186/1472-6785-12-14] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Accepted: 06/26/2012] [Indexed: 11/30/2022] Open
Abstract
Background Theory suggests that biodiversity can act as a buffer against disturbances and environmental variability via two major mechanisms: Firstly, a stabilising effect by decreasing the temporal variance in ecosystem functioning due to compensatory processes; and secondly, a performance enhancing effect by raising the level of community response through the selection of better performing species. Empirical evidence for the stabilizing effect of biodiversity is readily available, whereas experimental confirmation of the performance-enhancing effect of biodiversity is sparse. Results Here, we test the effect of different environmental regimes (constant versus fluctuating temperature) on bacterial biodiversity-ecosystem functioning relations. We show that positive effects of species richness on ecosystem functioning are enhanced by stronger temperature fluctuations due to the increased performance of individual species. Conclusions Our results provide evidence for the performance enhancing effect and suggest that selection towards functionally dominant species is likely to benefit the maintenance of ecosystem functioning under more variable conditions.
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Affiliation(s)
- Silke Langenheder
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, AB24 UU3, UK.
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49
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Mouquet N, Devictor V, Meynard CN, Munoz F, Bersier LF, Chave J, Couteron P, Dalecky A, Fontaine C, Gravel D, Hardy OJ, Jabot F, Lavergne S, Leibold M, Mouillot D, Münkemüller T, Pavoine S, Prinzing A, Rodrigues ASL, Rohr RP, Thébault E, Thuiller W. Ecophylogenetics: advances and perspectives. Biol Rev Camb Philos Soc 2012; 87:769-85. [PMID: 22432924 DOI: 10.1111/j.1469-185x.2012.00224.x] [Citation(s) in RCA: 206] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ecophylogenetics can be viewed as an emerging fusion of ecology, biogeography and macroevolution. This new and fast-growing field is promoting the incorporation of evolution and historical contingencies into the ecological research agenda through the widespread use of phylogenetic data. Including phylogeny into ecological thinking represents an opportunity for biologists from different fields to collaborate and has provided promising avenues of research in both theoretical and empirical ecology, towards a better understanding of the assembly of communities, the functioning of ecosystems and their responses to environmental changes. The time is ripe to assess critically the extent to which the integration of phylogeny into these different fields of ecology has delivered on its promise. Here we review how phylogenetic information has been used to identify better the key components of species interactions with their biotic and abiotic environments, to determine the relationships between diversity and ecosystem functioning and ultimately to establish good management practices to protect overall biodiversity in the face of global change. We evaluate the relevance of information provided by phylogenies to ecologists, highlighting current potential weaknesses and needs for future developments. We suggest that despite the strong progress that has been made, a consistent unified framework is still missing to link local ecological dynamics to macroevolution. This is a necessary step in order to interpret observed phylogenetic patterns in a wider ecological context. Beyond the fundamental question of how evolutionary history contributes to shape communities, ecophylogenetics will help ecology to become a better integrative and predictive science.
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Affiliation(s)
- Nicolas Mouquet
- Institut des Sciences de l'Evolution, UMR, CNRS, Université Montpellier, France.
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50
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van Elsas JD, Chiurazzi M, Mallon CA, Elhottova D, Kristufek V, Salles JF. Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci U S A 2012; 109:1159-64. [PMID: 22232669 PMCID: PMC3268289 DOI: 10.1073/pnas.1109326109] [Citation(s) in RCA: 462] [Impact Index Per Article: 38.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Natural ecosystems show variable resistance to invasion by alien species, and this resistance can relate to the species diversity in the system. In soil, microorganisms are key components that determine life support functions, but the functional redundancy in the microbiota of most soils has long been thought to overwhelm microbial diversity-function relationships. We here show an inverse relationship between soil microbial diversity and survival of the invading species Escherichia coli O157:H7, assessed by using the marked derivative strain T. The invader's fate in soil was determined in the presence of (i) differentially constructed culturable bacterial communities, and (ii) microbial communities established using a dilution-to-extinction approach. Both approaches revealed a negative correlation between the diversity of the soil microbiota and survival of the invader. The relationship could be explained by a decrease in the competitive ability of the invader in species-rich vs. species-poor bacterial communities, reflected in the amount of resources used and the rate of their consumption. Soil microbial diversity is a key factor that controls the extent to which bacterial invaders can establish.
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Affiliation(s)
- Jan Dirk van Elsas
- Department of Microbial Ecology, Center for Evolutionary and Ecological Studies, University of Groningen, 9700 CC, Groningen, The Netherlands.
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