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Hu M, Wang J, Sardans J, Wu H, Ni R, Guo P, Yan R, Liao H, Liu C, Peñuelas J, Tong C. Coastal conversion alters topsoil carbon, nitrogen and phosphorus stocks and stoichiometric balances in subtropical coastal wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 944:174011. [PMID: 38880140 DOI: 10.1016/j.scitotenv.2024.174011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/25/2024] [Accepted: 06/13/2024] [Indexed: 06/18/2024]
Abstract
The extensive conversion of coastal wetlands into agricultural and aquaculture areas has significant repercussions on soil nutrient balance. However, how coastal conversion specifically influences the dynamics and stoichiometry of topsoil carbon (C), nitrogen (N), and phosphorus (P) remains limited due to the considerable spatial variability and a lack of comprehensive field data. Here, we investigated the concentration and distribution of total C (TC), N (TN) and P (TP), along with their stoichiometric balance in four distinct coastal landscapes, including natural marshes and tidal flats, as well as converted agricultural croplands and ponds. The results revealed that converted croplands and ponds exhibited significantly higher concentrations of soil C, N and P, particularly in comparison to tidal flats. Furthermore, croplands and ponds have higher topsoil C stocks than tidal flats, but little difference or even lose stored C compared to marshes. Cropland soils showed considerably higher levels of available N (NH4+-N and NO3--N) and available P compared to those in natural marshes and tidal flats. The distribution of soil TC, TN, and TP demonstrated greater spatial heterogeneity in natural marshes and tidal flats, while the converted areas were more uniform and became hotspots for N and P accumulation. Coastal conversion altered soil C:N:P stoichiometry, with cropland soils exhibiting a lower N:P ratio (2.9 ± 1.1), indicating that long-term application of N and P fertilizers could decrease the N:P ratio, as P is more retained in the soil than N. Furthermore, it was observed that the dynamics of C, N and P, as well as their stoichiometry, are closely linked to soil physicochemical properties, especially soil organic matter and texture. These findings highlight that coastal conversion and associated management practices markedly affected soil C, N and P dynamics in a representative wetland area of the subtropical regions, leading to a reshaping of their stoichiometric balances, particularly in the topsoil layer.
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Affiliation(s)
- Minjie Hu
- Key Laboratory of Humid Sub-tropical Eco-geographical Processes of Ministry of Education, Fujian Normal University, Fuzhou 350007, China; School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Fujian Minjiang Estuary Wetland Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Fuzhou 350215, China.
| | - Jingtao Wang
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Jordi Sardans
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain
| | - Hui Wu
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Ranxu Ni
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Pingping Guo
- Fujian Minjiang Estuary Wetland Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Fuzhou 350215, China; Fujian Minjiang River Estuary Wetland National Nature Reserve Administrative Office, Fuzhou 350200, China
| | - Ruibing Yan
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Haoyu Liao
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Chunya Liu
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193 Barcelona, Catalonia, Spain
| | - Chuan Tong
- Key Laboratory of Humid Sub-tropical Eco-geographical Processes of Ministry of Education, Fujian Normal University, Fuzhou 350007, China; School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China; Fujian Minjiang Estuary Wetland Ecosystem National Observation and Research Station, National Forestry and Grassland Administration, Fuzhou 350215, China.
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Xie L, Cheng J, Cao H, Yang F, Jiang M, Li M, Huang Q. Fast Bacterial Succession Associated with the Decomposition of Larix gmelinii Litter in Wudalianchi Volcano. Microorganisms 2024; 12:948. [PMID: 38792778 PMCID: PMC11123687 DOI: 10.3390/microorganisms12050948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 04/30/2024] [Accepted: 05/01/2024] [Indexed: 05/26/2024] Open
Abstract
In order to understand the role of microorganisms in litter decomposition and the nutrient cycle in volcanic forest ecosystems, the dominant forest species Larix gmelinii in the volcanic lava plateau of the Wudalianchi volcano was considered as the research object. We analyzed the response of bacterial community structure and diversity to litter decomposition for 1 year, with an in situ decomposition experimental design using litter bags and Illumina MiSeq high-throughput sequencing. The results showed that after 365 days, the litter quality residual rate of Larix gmelinii was 77.57%, and the litter N, P, C:N, C:P, and N:P showed significant differences during the decomposition period (p < 0.05). The phyla Cyanobacteria and the genus unclassified_o_Chloroplast were the most dominant groups in early decomposition (January and April). The phyla Proteobacteria, Actinobacteriota, and Acidobacteriota and the genera Massilia, Pseudomonas, and Sphingomona were higher in July and October. The microbial communities showed extremely significant differences during the decomposition period (p < 0.05), with PCoa, RDA, and litter QRR, C:P, and N as the main factors driving litter bacteria succession. Microbial functional prediction analysis showed that Chloroplasts were the major functional group in January and April. Achemoheterotrophy and aerobic chemoheterotrophy showed a significant decrease as litter decomposition progressed.
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Affiliation(s)
- Lihong Xie
- Institute of Natural Resources and Ecology, Heilongjiang Academy of Sciences, Harbin 150040, China; (L.X.); (J.C.); (H.C.); (F.Y.); (M.J.)
| | - Jiahui Cheng
- Institute of Natural Resources and Ecology, Heilongjiang Academy of Sciences, Harbin 150040, China; (L.X.); (J.C.); (H.C.); (F.Y.); (M.J.)
| | - Hongjie Cao
- Institute of Natural Resources and Ecology, Heilongjiang Academy of Sciences, Harbin 150040, China; (L.X.); (J.C.); (H.C.); (F.Y.); (M.J.)
| | - Fan Yang
- Institute of Natural Resources and Ecology, Heilongjiang Academy of Sciences, Harbin 150040, China; (L.X.); (J.C.); (H.C.); (F.Y.); (M.J.)
| | - Mingyue Jiang
- Institute of Natural Resources and Ecology, Heilongjiang Academy of Sciences, Harbin 150040, China; (L.X.); (J.C.); (H.C.); (F.Y.); (M.J.)
| | - Maihe Li
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research, CH-8903 Birmensdorf, Switzerland;
- Key Laboratory of Geographical Processes and Ecological Security in Changbai Mountains, Ministry of Education, School of Geographical Sciences, Northeast Normal University, Changchun 130024, China
- School of Life Science, Hebei University, Baoding 071002, China
| | - Qingyang Huang
- Institute of Natural Resources and Ecology, Heilongjiang Academy of Sciences, Harbin 150040, China; (L.X.); (J.C.); (H.C.); (F.Y.); (M.J.)
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Tang H, Li Q, Bao Q, Tang B, Li K, Ding Y, Luo X, Zeng Q, Liu S, Shu X, Liu W, Du L. Interplay of soil characteristics and arbuscular mycorrhizal fungi diversity in alpine wetland restoration and carbon stabilization. Front Microbiol 2024; 15:1376418. [PMID: 38659977 PMCID: PMC11039953 DOI: 10.3389/fmicb.2024.1376418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 03/29/2024] [Indexed: 04/26/2024] Open
Abstract
Alpine wetlands are critical ecosystems for global carbon (C) cycling and climate change mitigation. Ecological restoration projects for alpine grazing wetlands are urgently needed, especially due to their critical role as carbon (C) sinks. However, the fate of the C pool in alpine wetlands after restoration from grazing remains unclear. In this study, soil samples from both grazed and restored wetlands in Zoige (near Hongyuan County, Sichuan Province, China) were collected to analyze soil organic carbon (SOC) fractions, arbuscular mycorrhizal fungi (AMF), soil properties, and plant biomass. Moreover, the Tea Bag Index (TBI) was applied to assess the initial decomposition rate (k) and stabilization factor (S), providing a novel perspective on SOC dynamics. The results of this research revealed that the mineral-associated organic carbon (MAOC) was 1.40 times higher in restored sites compared to grazed sites, although no significant difference in particulate organic carbon (POC) was detected between the two site types. Furthermore, the increased MAOC after restoration exhibited a significant positive correlation with various parameters including S, C and N content, aboveground biomass, WSOC, AMF diversity, and NH4+. This indicates that restoration significantly increases plant primary production, litter turnover, soil characteristics, and AMF diversity, thereby enhancing the C stabilization capacity of alpine wetland soils.
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Affiliation(s)
- Hao Tang
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest (Sichuan Normal University), Ministry of Education, Chengdu, China
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
| | - Qian Li
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Qian Bao
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest (Sichuan Normal University), Ministry of Education, Chengdu, China
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
| | - Biao Tang
- Sichuan Provincial Cultivated Land Quality and Fertilizer Workstation, Chengdu, China
| | - Kun Li
- Sichuan Academy of Forestry, Chengdu, China
| | - Yang Ding
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest (Sichuan Normal University), Ministry of Education, Chengdu, China
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
| | - Xiaojuan Luo
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
| | - Qiushu Zeng
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
| | - Size Liu
- Research Center for Carbon Sequestration and Ecological Restoration, Tianfu Yongxing Laboratory, Chengdu, China
| | - Xiangyang Shu
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest (Sichuan Normal University), Ministry of Education, Chengdu, China
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
| | - Weijia Liu
- Chengdu Academy of Agriculture and Forestry Sciences, Chengdu, China
| | - Lei Du
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest (Sichuan Normal University), Ministry of Education, Chengdu, China
- The Faculty of Geography Resource Sciences, Sichuan Normal University, Chengdu, China
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Underwood JC, Hall NC, Mumford AC, Harvey RW, Bliznik PA, Jeanis KM. Relation between the relative abundance and collapse of Aphanizomenon flos-aquae and microbial antagonism in Upper Klamath Lake, Oregon. FEMS Microbiol Ecol 2024; 100:fiae043. [PMID: 38533659 PMCID: PMC11022654 DOI: 10.1093/femsec/fiae043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 03/04/2024] [Accepted: 03/25/2024] [Indexed: 03/28/2024] Open
Abstract
Aphanizomenon flos-aquae (AFA) is the dominant filamentous cyanobacterium that develops into blooms in Upper Klamath Lake, Oregon, each year. During AFA bloom and collapse, ecosystem conditions for endangered Lost River and shortnose suckers deteriorate, thus motivating the need to identify processes that limit AFA abundance and decline. Here, we investigate the relations between AFA and other members of the microbial community (photosynthetic and nonphotosynthetic bacteria and archaea), how those relations impact abundance and collapse of AFA, and the types of microbial conditions that suppress AFA. We found significant spatial variation in AFA relative abundance during the 2016 bloom period using 16S rRNA sequencing. The Pelican Marina site had the lowest AFA relative abundance, and this was coincident with increased relative abundance of Candidatus Sericytochromatia, Flavobacterium, and Rheinheimera, some of which are known AFA antagonists. The AFA collapse coincided with phosphorus limitation relative to nitrogen and the increased relative abundance of Cyanobium and Candidatus Sericytochromatia, which outcompete AFA when dissolved inorganic nitrogen is available. The data collected in this study indicate the importance of dissolved inorganic nitrogen combined with microbial community structure in suppressing AFA abundance.
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Affiliation(s)
- Jennifer C Underwood
- U.S. Geological Survey, Water Mission Area, 3215 Marine Street, Boulder, CO 80303, United States
| | - Natalie C Hall
- U.S. Geological Survey, Maryland–Delaware–D.C. Water Science Center, 5522 Research Park Dr, Catonsville, MD 21228, United States
| | - Adam C Mumford
- U.S. Geological Survey, Maryland–Delaware–D.C. Water Science Center, 5522 Research Park Dr, Catonsville, MD 21228, United States
| | - Ronald W Harvey
- U.S. Geological Survey, Water Mission Area, 3215 Marine Street, Boulder, CO 80303, United States
| | - Paul A Bliznik
- U.S. Geological Survey, Water Mission Area, 3215 Marine Street, Boulder, CO 80303, United States
| | - Kaitlyn M Jeanis
- U.S. Geological Survey, Water Mission Area, 3215 Marine Street, Boulder, CO 80303, United States
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Hartman WH, Bueno de Mesquita CP, Theroux SM, Morgan-Lang C, Baldocchi DD, Tringe SG. Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient. mSystems 2024; 9:e0093623. [PMID: 38170982 PMCID: PMC10804969 DOI: 10.1128/msystems.00936-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 11/29/2023] [Indexed: 01/05/2024] Open
Abstract
Estuarine wetlands harbor considerable carbon stocks, but rising sea levels could affect their ability to sequester soil carbon as well as their potential to emit methane (CH4). While sulfate loading from seawater intrusion may reduce CH4 production due to the higher energy yield of microbial sulfate reduction, existing studies suggest other factors are likely at play. Our study of 11 wetland complexes spanning a natural salinity and productivity gradient across the San Francisco Bay and Delta found that while CH4 fluxes generally declined with salinity, they were highest in oligohaline wetlands (ca. 3-ppt salinity). Methanogens and methanogenesis genes were weakly correlated with CH4 fluxes but alone did not explain the highest rates observed. Taxonomic and functional gene data suggested that other microbial guilds that influence carbon and nitrogen cycling need to be accounted for to better predict CH4 fluxes at landscape scales. Higher methane production occurring near the freshwater boundary with slight salinization (and sulfate incursion) might result from increased sulfate-reducing fermenter and syntrophic populations, which can produce substrates used by methanogens. Moreover, higher salinities can solubilize ionically bound ammonium abundant in the lower salinity wetland soils examined here, which could inhibit methanotrophs and potentially contribute to greater CH4 fluxes observed in oligohaline sediments.IMPORTANCELow-level salinity intrusion could increase CH4 flux in tidal freshwater wetlands, while higher levels of salinization might instead decrease CH4 fluxes. High CH4 emissions in oligohaline sites are concerning because seawater intrusion will cause tidal freshwater wetlands to become oligohaline. Methanogenesis genes alone did not account for landscape patterns of CH4 fluxes, suggesting mechanisms altering methanogenesis, methanotrophy, nitrogen cycling, and ammonium release, and increasing decomposition and syntrophic bacterial populations could contribute to increases in net CH4 flux at oligohaline salinities. Improved understanding of these influences on net CH4 emissions could improve restoration efforts and accounting of carbon sequestration in estuarine wetlands. More pristine reference sites may have older and more abundant organic matter with higher carbon:nitrogen compared to wetlands impacted by agricultural activity and may present different interactions between salinity and CH4. This distinction might be critical for modeling efforts to scale up biogeochemical process interactions in estuarine wetlands.
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Affiliation(s)
| | | | | | - Connor Morgan-Lang
- Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada
| | - Dennis D. Baldocchi
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, California, USA
| | - Susannah G. Tringe
- DOE Joint Genome Institute, Berkeley, California, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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Candry P, Flinkstrom Z, Henriikka Winkler MK. Wetlands harbor lactic acid-driven chain elongators. Microbiol Spectr 2024; 12:e0210523. [PMID: 38084977 PMCID: PMC10783096 DOI: 10.1128/spectrum.02105-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 11/02/2023] [Indexed: 01/13/2024] Open
Abstract
IMPORTANCE Wetlands are globally significant carbon cycling hotspots that both sequester large amounts of CO2 as soil carbon as well as emit a third of all CH4 globally. Their outsized role in the global carbon cycle makes it critical to understand microbial processes contributing to carbon breakdown and storage in these ecosystems. Here, we confirm the presence of chain-elongating organisms in freshwater wetland soils. These organisms take small carbon compounds formed during the breakdown of biomass and turn them into larger compounds (six to eight carbon organic acids) that may potentially contribute to the formation of soil organic matter and long-term carbon storage. Moreover, we find that these chain-elongating organisms may be widely distributed in wetlands globally. Future work should identify these organisms' contribution to carbon cycling in wetlands and the potential role of the products they form in carbon sequestration in wetlands.
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Affiliation(s)
- Pieter Candry
- Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA
| | - Zachary Flinkstrom
- Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA
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Li D, Jiang C, Jiang C, Liu F, Zhu Q. Geochemical characteristics and migration patterns of rare earth elements in coal mining subsidence lakes under the influence of multiple factors. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166668. [PMID: 37660822 DOI: 10.1016/j.scitotenv.2023.166668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 08/26/2023] [Accepted: 08/27/2023] [Indexed: 09/05/2023]
Abstract
Mining activities cause surface subsidence and the formation of subsidence lakes, which dynamically change with the continuous coal mining activities. Under the combined influence of various human activities such as agriculture, aquaculture, and floating photovoltaic (FPV), the lake environment undergoes continuous changes, thereby altering the geochemical characteristics of rare earth elements (REEs) in the sediment. This study focused on the subsidence lakes in the Huainan coalfield in eastern China to examine the REEs content in the sediment, elucidated the temporal variations and geochemical characteristics of REEs distribution, explored the main controlling factors of REEs in the sediment, and revealed the migration and transformation behavior of REEs during dynamic subsidence processes. The study revealed that the migration pattern of REEs in the sediment was closely related to the duration of subsidence. The average content of REEs in lake sediments with subsidence duration <5 years increased from 219 μg·g-1 to 248 μg·g-1 compared to the soil, showing an enrichment model primarily driven by rainwater runoff, groundwater input retention, and mineral dissolution. With further subsidence, the processes of reduction dissolution of Fe-Mn oxides/hydroxides, organic colloid adsorption, and hydraulic disturbance gradually replaced the aforementioned enrichment behavior as the main migration pathways, resulting in a decrease in the average REEs content in the sediment to 179 μg·g-1 for subsidence durations exceeding 10 years. There was no strong correlation between REEs fractionation and subsidence duration. Artificial activities, such as FPV, are important factors causing Cerium and Erbium anomalies in some subsidence lake sediments. This study was not only of significant importance for understanding the migration, distribution, and environmental behavior of pollutants in aquatic environments under the interference of human activities but also provided a solid theoretical foundation for the future management of coal mining subsidence lakes.
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Affiliation(s)
- Desheng Li
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, Anhui, China
| | - Chunlu Jiang
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, Anhui, China; School of Resources and Geoscience, China University of Mining and Technology, Xuzhou 221116, Jiangsu, China.
| | - Chenghong Jiang
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, Anhui, China
| | - Feng Liu
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, Anhui, China
| | - Qiyu Zhu
- School of Resources and Environmental Engineering, Anhui University, Hefei 230601, Anhui, China
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Yang Y, Callaham MA, Wu X, Zhang Y, Wu D, Wang D. Gut microbial communities and their potential roles in cellulose digestion and thermal adaptation of earthworms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 903:166666. [PMID: 37657540 DOI: 10.1016/j.scitotenv.2023.166666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 08/15/2023] [Accepted: 08/27/2023] [Indexed: 09/03/2023]
Abstract
Adaptations to temperature and food resources, which can be affected by gut microbiota, are two main adaptive strategies allowing soil fauna to survive in their habitats, especially for cold-blooded animals. Earthworms are often referred to as ecosystem engineers because they make up the biggest component of the animal biomass found in the soil. They are considered as an important indicator in the triangle of soil quality, health and functions. However, the roles of gut microbiota in the environmental adaptation of earthworms at a large scale remain obscure. We explored the gut bacterial communities and their functions in the environmental adaptation of two widespread earthworm species (Eisenia nordenskioldi Eisen and Drawida ghilarovi Gates) in Northeast China (1661 km). Based on our findings, the alpha diversity of gut bacterial communities decreased with the increase of latitude, and the gut bacterial community composition was shaped by both mean annual temperature (MAT) and cellulose. Actinobacteria, Proteobacteria, Firmicutes, and Planctomycetes, recognized as the predominant cellulose degraders, were keystone taxa driving gut bacterial interactions. Actinobacteria, Firmicutes, and Planctomycetes were influenced by MAT and cellulose, and had higher contributions to gut total cellulase activity. The optimal temperature for total cellulase in the gut of E. nordenskioldi (25-30 °C) was lower than that of D ghilarovi (40 °C). The gut microbiota-deleted earthworms had the lowest cellulose degradation rate (1.07 %). The cellulose was degraded faster by gut bacteria from the host they were derived, indicating the presence of home field advantage of cellulose decomposition. This study provides a foundation for understanding the biotic strategies adopted by earthworms when they enter a new habitat, with gut microbiota being central to food digestion and environmental adaptability.
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Affiliation(s)
- Yurong Yang
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Mac A Callaham
- USDA, Forest Service, Southern Research Station, Center for Forest Disturbance Science, Athens, GA 30602, USA
| | - Xuefeng Wu
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Yufeng Zhang
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China; Hebei Key Laboratory of Animal Diversity, Langfang Normal University, Langfang, 065000, China
| | - Donghui Wu
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China; Jilin Provincial Key Laboratory of Animal Resource Conservation and Utilization, Northeast Normal University, Changchun, 130117, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, China; Jilin Songnen Grassland Ecosystem National Observation and Research Station, Changchun, 130024, China.
| | - Deli Wang
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China; Jilin Songnen Grassland Ecosystem National Observation and Research Station, Changchun, 130024, China
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Likar M, Grašič M, Stres B, Regvar M, Gaberščik A. Metagenomics reveals effects of fluctuating water conditions on functional pathways in plant litter microbial community. Sci Rep 2023; 13:21741. [PMID: 38066117 PMCID: PMC10709317 DOI: 10.1038/s41598-023-49044-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 12/04/2023] [Indexed: 12/18/2023] Open
Abstract
Climate change modifies environmental conditions, resulting in altered precipitation patterns, moisture availability and nutrient distribution for microbial communities. Changes in water availability are projected to affect a range of ecological processes, including the decomposition of plant litter and carbon cycling. However, a detailed understanding of microbial stress response to drought/flooding is missing. In this study, an intermittent lake is taken up as a model for changes in water availability and how they affect the functional pathways in microbial communities of the decomposing Phragmites australis litter. The results show that most enriched functions in both habitats belonged to the classes of Carbohydrates and Clustering-based subsystems (terms with unknown function) from SEED subsystems classification. We confirmed that changes in water availability resulted in altered functional makeup of microbial communities. Our results indicate that microbial communities under more frequent water stress (due to fluctuating conditions) could sustain an additional metabolic cost due to the production or uptake of compatible solutes to maintain cellular osmotic balance. Nevertheless, although prolonged submergence seemed to have a negative impact on several functional traits in the fungal community, the decomposition rate was not affected.
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Affiliation(s)
- Matevž Likar
- Biotechnical Faculty, Department of Biology, University of Ljubljana, Večna Pot 111, 1000, Ljubljana, Slovenia.
| | - Mateja Grašič
- Biotechnical Faculty, Department of Biology, University of Ljubljana, Večna Pot 111, 1000, Ljubljana, Slovenia
| | - Blaž Stres
- Institute of Sanitary Engineering, Faculty of Civil and Geodetic Engineering, University of Ljubljana, Ljubljana, Slovenia
- Biocybernetics and Robotics, Department of Automation, Jožef Stefan Institute, Ljubljana, Slovenia
- Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia
| | - Marjana Regvar
- Biotechnical Faculty, Department of Biology, University of Ljubljana, Večna Pot 111, 1000, Ljubljana, Slovenia
| | - Alenka Gaberščik
- Biotechnical Faculty, Department of Biology, University of Ljubljana, Večna Pot 111, 1000, Ljubljana, Slovenia
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Wang Z, Solanki MK, Kumar A, Solanki AC, Pang F, Ba ZX, Niu JQ, Ren ZX. Promoting plant resilience against stress by engineering root microenvironment with Streptomyces inoculants. Microbiol Res 2023; 277:127509. [PMID: 37788547 DOI: 10.1016/j.micres.2023.127509] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 09/24/2023] [Accepted: 09/26/2023] [Indexed: 10/05/2023]
Abstract
Plant growth is directly influenced by biotic and abiotic stress factors resulting from environmental changes. Plant growth-promoting rhizobacteria (PGPR) have become a crucial area of research aimed at addressing these challenges. However, a knowledge gap exists regarding how PGPR impacts the microenvironments surrounding plant roots. The purpose of this study is to elucidate the effects of two distinct PGPR strains, Streptomyces griseorubiginosus BTU6 (known for its resistance to smut disease) and S. chartreusis WZS021, on sugarcane roots. Additionally, we compare the resultant modifications in the physicochemical characteristics of the rhizospheric soil and root architecture. The results reveal that following the inoculation of S. chartreusis WZS021, there was a significant increase in the active chemicals associated with nitrogen metabolism in sugarcane roots. This enhancement led to a substantial enrichment of nitrogen-cycling microbes like Pseudomonas and Gemmatimona. This finding supports earlier research indicating that S. chartreusis WZS021 enhances sugarcane's capacity to utilize nitrogen effectively. Furthermore, after treatment with S. chartreusis, Aspergillus became the predominant strain among endophytic fungi, resulting in alterations to their community structure that conferred drought resistance. In contrast, the relative abundance of Xanthomonas in the root environment decreased following inoculation with S. griseorubiginosus. Instead, Gemmatimona became more prevalent, creating a favorable environment for plants to bolster their resistance against disease. Notably, inoculations with S. chartreusis WZS021 and S. griseorubiginosus BTU6 led to substantial changes in the chemical composition, enzymatic activity, and microbial community composition in the soil surrounding sugarcane roots. However, there were distinct differences in the specific alterations induced by each strain. These findings enhance plant resilience to stress by shedding light on PGPR-mediated modifications in root microenvironments.
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Affiliation(s)
- Zhen Wang
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Agricultural College, Yulin Normal University, Yulin 537000, China
| | - Manoj Kumar Solanki
- Department of Life Sciences and Biological Sciences, IES University, Bhopal, Madhya Pradesh, India; Plant Cytogenetics and Molecular Biology Group, Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Ajay Kumar
- Amity Institute of Biotechnology, Amity University, Sector-125, Noida, Uttar Pradesh 201313, India
| | - Anjali Chandrol Solanki
- Department of Agriculture, Mansarover Global University, Bhopal, Madhya Pradesh 462042, India
| | - Fei Pang
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Agricultural College, Yulin Normal University, Yulin 537000, China
| | - Zi-Xuan Ba
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Agricultural College, Yulin Normal University, Yulin 537000, China
| | - Jun-Qi Niu
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Agricultural College, Yulin Normal University, Yulin 537000, China.
| | - Zhen-Xin Ren
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Agricultural College, Yulin Normal University, Yulin 537000, China.
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11
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Bansal S, Creed IF, Tangen BA, Bridgham SD, Desai AR, Krauss KW, Neubauer SC, Noe GB, Rosenberry DO, Trettin C, Wickland KP, Allen ST, Arias-Ortiz A, Armitage AR, Baldocchi D, Banerjee K, Bastviken D, Berg P, Bogard MJ, Chow AT, Conner WH, Craft C, Creamer C, DelSontro T, Duberstein JA, Eagle M, Fennessy MS, Finkelstein SA, Göckede M, Grunwald S, Halabisky M, Herbert E, Jahangir MMR, Johnson OF, Jones MC, Kelleway JJ, Knox S, Kroeger KD, Kuehn KA, Lobb D, Loder AL, Ma S, Maher DT, McNicol G, Meier J, Middleton BA, Mills C, Mistry P, Mitra A, Mobilian C, Nahlik AM, Newman S, O’Connell JL, Oikawa P, van der Burg MP, Schutte CA, Song C, Stagg CL, Turner J, Vargas R, Waldrop MP, Wallin MB, Wang ZA, Ward EJ, Willard DA, Yarwood S, Zhu X. Practical Guide to Measuring Wetland Carbon Pools and Fluxes. WETLANDS (WILMINGTON, N.C.) 2023; 43:105. [PMID: 38037553 PMCID: PMC10684704 DOI: 10.1007/s13157-023-01722-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 07/24/2023] [Indexed: 12/02/2023]
Abstract
Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have been developed to understand and quantify pools and fluxes of wetland C. Sampling approaches range in their representation of wetland C from short to long timeframes and local to landscape spatial scales. This review summarizes common and cutting-edge methodological approaches for quantifying wetland C pools and fluxes. We first define each of the major C pools and fluxes and provide rationale for their importance to wetland C dynamics. For each approach, we clarify what component of wetland C is measured and its spatial and temporal representativeness and constraints. We describe practical considerations for each approach, such as where and when an approach is typically used, who can conduct the measurements (expertise, training requirements), and how approaches are conducted, including considerations on equipment complexity and costs. Finally, we review key covariates and ancillary measurements that enhance the interpretation of findings and facilitate model development. The protocols that we describe to measure soil, water, vegetation, and gases are also relevant for related disciplines such as ecology. Improved quality and consistency of data collection and reporting across studies will help reduce global uncertainties and develop management strategies to use wetlands as nature-based climate solutions. Supplementary Information The online version contains supplementary material available at 10.1007/s13157-023-01722-2.
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Affiliation(s)
- Sheel Bansal
- U.S. Geological Survey, Northern Prairie Wildlife Research Center, Jamestown, ND USA
| | - Irena F. Creed
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON Canada
| | - Brian A. Tangen
- U.S. Geological Survey, Northern Prairie Wildlife Research Center, Jamestown, ND USA
| | - Scott D. Bridgham
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR USA
| | - Ankur R. Desai
- Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, WI USA
| | - Ken W. Krauss
- U.S. Geological Survey, Wetland and Aquatic Research Center, Lafayette, LA USA
| | - Scott C. Neubauer
- Department of Biology, Virginia Commonwealth University, Richmond, VA USA
| | - Gregory B. Noe
- U.S. Geological Survey, Florence Bascom Geoscience Center, Reston, VA USA
| | | | - Carl Trettin
- U.S. Forest Service, Pacific Southwest Research Station, Davis, CA USA
| | - Kimberly P. Wickland
- U.S. Geological Survey, Geosciences and Environmental Change Science Center, Denver, CO USA
| | - Scott T. Allen
- Department of Natural Resources and Environmental Science, University of Nevada, Reno, Reno, NV USA
| | - Ariane Arias-Ortiz
- Ecosystem Science Division, Department of Environmental Science, Policy and Management, University of California, Berkeley, CA USA
| | - Anna R. Armitage
- Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX USA
| | - Dennis Baldocchi
- Department of Environmental Science, Policy and Management, University of California, Berkeley, CA USA
| | - Kakoli Banerjee
- Department of Biodiversity and Conservation of Natural Resources, Central University of Odisha, Koraput, Odisha India
| | - David Bastviken
- Department of Thematic Studies – Environmental Change, Linköping University, Linköping, Sweden
| | - Peter Berg
- Department of Environmental Sciences, University of Virginia, Charlottesville, VA USA
| | - Matthew J. Bogard
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB Canada
| | - Alex T. Chow
- Earth and Environmental Sciences Programme, The Chinese University of Hong Kong, Shatin, Hong Kong SAR China
| | - William H. Conner
- Baruch Institute of Coastal Ecology and Forest Science, Clemson University, Georgetown, SC USA
| | - Christopher Craft
- O’Neill School of Public and Environmental Affairs, Indiana University, Bloomington, IN USA
| | - Courtney Creamer
- U.S. Geological Survey, Geology, Minerals, Energy and Geophysics Science Center, Menlo Park, CA USA
| | - Tonya DelSontro
- Department of Earth and Environmental Sciences, University of Waterloo, Waterloo, ON Canada
| | - Jamie A. Duberstein
- Baruch Institute of Coastal Ecology and Forest Science, Clemson University, Georgetown, SC USA
| | - Meagan Eagle
- U.S. Geological Survey, Woods Hole Coastal & Marine Science Center, Woods Hole, MA USA
| | | | | | - Mathias Göckede
- Department for Biogeochemical Signals, Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Sabine Grunwald
- Soil, Water and Ecosystem Sciences Department, University of Florida, Gainesville, FL USA
| | - Meghan Halabisky
- School of Environmental and Forest Sciences, University of Washington, Seattle, WA USA
| | | | | | - Olivia F. Johnson
- U.S. Geological Survey, Northern Prairie Wildlife Research Center, Jamestown, ND USA
- Departments of Biology and Environmental Studies, Kent State University, Kent, OH USA
| | - Miriam C. Jones
- U.S. Geological Survey, Florence Bascom Geoscience Center, Reston, VA USA
| | - Jeffrey J. Kelleway
- School of Earth, Atmospheric and Life Sciences and Environmental Futures Research Centre, University of Wollongong, Wollongong, NSW Australia
| | - Sara Knox
- Department of Geography, McGill University, Montreal, Canada
| | - Kevin D. Kroeger
- U.S. Geological Survey, Woods Hole Coastal & Marine Science Center, Woods Hole, MA USA
| | - Kevin A. Kuehn
- School of Biological, Environmental, and Earth Sciences, University of Southern Mississippi, Hattiesburg, MS USA
| | - David Lobb
- Department of Soil Science, University of Manitoba, Winnipeg, MB Canada
| | - Amanda L. Loder
- Department of Geography, University of Toronto, Toronto, ON Canada
| | - Shizhou Ma
- School of Environment and Sustainability, University of Saskatchewan, Saskatoon, SK Canada
| | - Damien T. Maher
- Faculty of Science and Engineering, Southern Cross University, Lismore, NSW Australia
| | - Gavin McNicol
- Department of Earth and Environmental Sciences, University of Illinois Chicago, Chicago, IL USA
| | - Jacob Meier
- U.S. Geological Survey, Northern Prairie Wildlife Research Center, Jamestown, ND USA
| | - Beth A. Middleton
- U.S. Geological Survey, Wetland and Aquatic Research Center, Lafayette, LA USA
| | - Christopher Mills
- U.S. Geological Survey, Geology, Geophysics, and Geochemistry Science Center, Denver, CO USA
| | - Purbasha Mistry
- School of Environment and Sustainability, University of Saskatchewan, Saskatoon, SK Canada
| | - Abhijit Mitra
- Department of Marine Science, University of Calcutta, Kolkata, West Bengal India
| | - Courtney Mobilian
- O’Neill School of Public and Environmental Affairs, Indiana University, Bloomington, IN USA
| | - Amanda M. Nahlik
- Office of Research and Development, Center for Public Health and Environmental Assessments, Pacific Ecological Systems Division, U.S. Environmental Protection Agency, Corvallis, OR USA
| | - Sue Newman
- South Florida Water Management District, Everglades Systems Assessment Section, West Palm Beach, FL USA
| | - Jessica L. O’Connell
- Department of Ecosystem Science and Sustainability, Colorado State University, Fort Collins, CO USA
| | - Patty Oikawa
- Department of Earth and Environmental Sciences, California State University, East Bay, Hayward, CA USA
| | - Max Post van der Burg
- U.S. Geological Survey, Northern Prairie Wildlife Research Center, Jamestown, ND USA
| | - Charles A. Schutte
- Department of Environmental Science, Rowan University, Glassboro, NJ USA
| | - Changchun Song
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Camille L. Stagg
- U.S. Geological Survey, Wetland and Aquatic Research Center, Lafayette, LA USA
| | - Jessica Turner
- Freshwater and Marine Science, University of Wisconsin-Madison, Madison, WI USA
| | - Rodrigo Vargas
- Department of Plant and Soil Sciences, University of Delaware, Newark, DE USA
| | - Mark P. Waldrop
- U.S. Geological Survey, Geology, Minerals, Energy and Geophysics Science Center, Menlo Park, CA USA
| | - Marcus B. Wallin
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Zhaohui Aleck Wang
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA USA
| | - Eric J. Ward
- U.S. Geological Survey, Wetland and Aquatic Research Center, Lafayette, LA USA
| | - Debra A. Willard
- U.S. Geological Survey, Florence Bascom Geoscience Center, Reston, VA USA
| | - Stephanie Yarwood
- Environmental Science and Technology, University of Maryland, College Park, MD USA
| | - Xiaoyan Zhu
- Key Laboratory of Songliao Aquatic Environment, Ministry of Education, Jilin Jianzhu University, Changchun, China
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12
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Ter Horst AM, Fudyma JD, Sones JL, Emerson JB. Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography. THE ISME JOURNAL 2023; 17:2079-2089. [PMID: 37735616 PMCID: PMC10579374 DOI: 10.1038/s41396-023-01516-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 09/08/2023] [Indexed: 09/23/2023]
Abstract
Wetlands store 20-30% of the world's soil carbon, and identifying the microbial controls on these carbon reserves is essential to predicting feedbacks to climate change. Although viral infections likely play important roles in wetland ecosystem dynamics, we lack a basic understanding of wetland viral ecology. Here 63 viral size-fraction metagenomes (viromes) and paired total metagenomes were generated from three time points in 2021 at seven fresh- and saltwater wetlands in the California Bodega Marine Reserve. We recovered 12,826 viral population genomic sequences (vOTUs), only 4.4% of which were detected at the same field site two years prior, indicating a small degree of population stability or recurrence. Viral communities differed most significantly among the seven wetland sites and were also structured by habitat (plant community composition and salinity). Read mapping to a new version of our reference database, PIGEONv2.0 (515,763 vOTUs), revealed 196 vOTUs present over large geographic distances, often reflecting shared habitat characteristics. Wetland vOTU microdiversity was significantly lower locally than globally and lower within than between time points, indicating greater divergence with increasing spatiotemporal distance. Viruses tended to have broad predicted host ranges via CRISPR spacer linkages to metagenome-assembled genomes, and increased SNP frequencies in CRISPR-targeted major tail protein genes suggest potential viral eco-evolutionary dynamics in response to both immune targeting and changes in host cell receptors involved in viral attachment. Together, these results highlight the importance of dispersal, environmental selection, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography.
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Affiliation(s)
| | - Jane D Fudyma
- Department of Plant Pathology, University of California, Davis, CA, USA
| | - Jacqueline L Sones
- Bodega Marine Reserve, University of California, Davis, Bodega Bay, CA, USA
| | - Joanne B Emerson
- Department of Plant Pathology, University of California, Davis, CA, USA.
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13
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Weingarten EA, Jackson CR. Microbial Composition of Freshwater Marsh Sediment Responds more Strongly to Microcosm Seawater Addition than Simulated Nitrate or Phosphate Eutrophication. MICROBIAL ECOLOGY 2023; 86:1060-1070. [PMID: 36152034 DOI: 10.1007/s00248-022-02111-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 09/13/2022] [Indexed: 06/16/2023]
Abstract
As sea level rise impacts coastal wetlands, saltmarsh will overtake coastal freshwater marsh in many areas, but changes in the sediment microbiome in response to saltwater intrusion are difficult to predict. Coastal freshwater marsh sediment was exposed to ambient, brackish, and saline conditions as well as to elevated nitrate and phosphate to model the combined stresses of saltwater intrusion and coastal eutrophication. Initially, sediment prokaryotic composition was similar to prior studies of freshwater marsh but diverged over time, reflecting the magnitude of increase in saltwater. There was no observed effect of nutrient amendment, potentially ranking seawater intrusion as a higher-importance compositional driver. Although the previously described loss of methanogenic populations and promotion of sulfate reducers in response to saltwater exposure was observed, taxonomic distribution was not similar to typical meso-polyhaline wetlands. Without colonization by marine taxa, such a community may be short-lived naturally, ultimately equilibrating with more common saltmarsh species. However, the recapitulation of salinity concentration by freshwater sediment microbial composition demonstrates the overwhelming nature of saltwater intrusion relative to other drivers like eutrophication.
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Affiliation(s)
- Eric A Weingarten
- Department of Biology, University of Mississippi, University, MS, 38677, USA.
- Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS, 39180, USA.
| | - Colin R Jackson
- Department of Biology, University of Mississippi, University, MS, 38677, USA
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14
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Luo H, Dai X, Wang Q, Yang Y, Xie S. The accumulation and release characteristics of heavy metals on the cultivation environment in Gracilaria litters during decay process. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 879:163091. [PMID: 37001267 DOI: 10.1016/j.scitotenv.2023.163091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 03/01/2023] [Accepted: 03/23/2023] [Indexed: 05/17/2023]
Abstract
Gracilaria bioremediates heavy metals (Cd, Cr, Pb, Ni, Cu, Zn, Fe, and Mn) and improves water quality in mariculture zones. However, Gracilaria litter produced during the growth and harvest process has become a critical bottleneck problem that limits the sustainable development of the Gracilaria cultivation industry. Experiments of decaying dried (dead) and frozen fresh (falling and dying) G. lemaneiformis and G. lichenosdies were carried out using the litterbag technique under laboratory-controlled and in situ conditions. The results showed that decay rates (k), decomposed time in 50 % (t50) and in 95 % (t95) varied between dried and frozen fresh Gracilaria and were different between G. lemaneiformis and G. lichenosdies. All Gracilaria samples showed an 80 %-90 % weight loss in 15-45 d. The variation in MAIs (accumulation index of metals) between the dried and frozen fresh Gracilaria litters differed significantly and provided evidence that metals could be imported or exported from litter to the environment. Based on our estimates from the 15-45 d experiment, the decay of Gracilaria can release and adsorb heavy metals. The enrichment of Fe, Pb, and Mn was more significant than the release, but the release of Cr, Zn, Cd, Pb, Cu, and Ni was more significant than the enrichment. Heavy metals in Gracilaria litters were accumulated and released simultaneously during decay. The present study simulated and underscores that Gracilaria cultivation intensely influences heavy metals recycled in marine environments It provides a theoretical basis for seaweed management for the sustainable development of the seaweed industry in the mariculture zone.
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Affiliation(s)
- Hongtian Luo
- Institute of Hydrobiology, Key Laboratory of Philosophy and Social Science in Guangdong Province of Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China; State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China; Engineering Research Center for Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Jinan University, Guangzhou 510632, China
| | - Xiaojuan Dai
- Institute of Hydrobiology, Key Laboratory of Philosophy and Social Science in Guangdong Province of Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China
| | - Qing Wang
- Institute of Hydrobiology, Key Laboratory of Philosophy and Social Science in Guangdong Province of Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China; Engineering Research Center for Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Jinan University, Guangzhou 510632, China
| | - Yufeng Yang
- Institute of Hydrobiology, Key Laboratory of Philosophy and Social Science in Guangdong Province of Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China; Engineering Research Center for Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Jinan University, Guangzhou 510632, China.
| | - Songguang Xie
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China.
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15
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Fu L, Xie R, Ma D, Zhang M, Liu L. Variations in soil microbial community structure and extracellular enzymatic activities along a forest-wetland ecotone in high-latitude permafrost regions. Ecol Evol 2023; 13:e10205. [PMID: 37332520 PMCID: PMC10269122 DOI: 10.1002/ece3.10205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 06/02/2023] [Accepted: 06/05/2023] [Indexed: 06/20/2023] Open
Abstract
Permafrost degradation by global warming is expected to alter the hydrological processes, which results in changes in vegetation species composition and gives rise to community succession. Ecotones are sensitive transition areas between ecosystem boundaries, attract particular interest due to their ecological importance and prompt responses to the environmental variables. However, the characteristics of soil microbial communities and extracellular enzymes along the forest-wetland ecotone in high-latitude permafrost region remain poorly understood. In this study, we evaluated the variations of soil bacterial and fungal community structures and soil extracellular enzymatic activities of 0-10 cm and 10-20 cm soil layers in five different wetland types along environmental gradients, including Larix gmelinii swamp (LY), Betula platyphylla swamp (BH), Alnus sibirica var. hirsute swamp (MCY), thicket swamp (GC), and tussock swamp (CC). The relative abundances of some dominant bacterial (Actinobacteria and Verrucomicrobia) and fungal (Ascomycota and Basidiomycota) phyla differed significantly among different wetlands, while bacterial and fungal alpha diversity was not strongly affected by soil depth. PCoA results showed that vegetation type, rather than soil depth explained more variation of soil microbial community structure. β-glucosidase and β-N-acetylglucosaminidase activities were significantly lower in GC and CC than in LY, BH, and MCY, while acid phosphatase activity was significantly higher in BH and GC than LY and CC. Altogether, the data suggest that soil moisture content (SMC) was the most important environmental factor contributing to the bacterial and fungal communities, while extracellular enzymatic activities were closely related to soil total organic carbon (TOC), nitrate nitrogen (NO3--N) and total phosphorus (TP).
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Affiliation(s)
- Lingyu Fu
- College of Geographical SciencesHarbin Normal UniversityHarbinChina
| | - Ruifeng Xie
- College of Geographical SciencesHarbin Normal UniversityHarbinChina
| | - Dalong Ma
- College of Geographical SciencesHarbin Normal UniversityHarbinChina
| | - Man Zhang
- College of Geographical SciencesHarbin Normal UniversityHarbinChina
| | - Lin Liu
- College of Geographical SciencesHarbin Normal UniversityHarbinChina
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16
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Huang X, Wang K, Wen X, Liu J, Zhang Y, Rong J, Nie M, Fu C, Zheng B, Yuan Z, Gong L, Zhan H, Shen R. Flooding duration affects the temperature sensitivity of soil extracellular enzyme activities in a lakeshore wetland in Poyang Lake, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 874:162397. [PMID: 36848996 DOI: 10.1016/j.scitotenv.2023.162397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 02/10/2023] [Accepted: 02/18/2023] [Indexed: 06/18/2023]
Abstract
Extracellular enzymes play central roles in the biogeochemical cycles in wetland ecosystems. Their activities are strongly impacted by hydrothermal conditions. Under the ongoing global change, many studies reported the individual effects of flooding and warming on extracellular enzyme activities, however, few researches investigated their interactive effects. Therefore, the current study aims to determine the responses of extracellular enzyme activities to warming in wetland soils under divergent flooding regimes. We investigated the temperature sensitivity of seven extracellular enzymes related to carbon (α-glucosidase, AG; β-glucosidase, BG; cellobiohydrolase, CBH; β-xylosidase, XYL), nitrogen (β-N-acetyl -glucosaminidase, NAG; leucine aminopeptidase, LAP), and phosphorus (Phosphatase, PHOS) cycling along the flooding duration gradient in a lakeshore wetland of Poyang Lake, China. The Q10 value, calculated using a temperature gradient (10, 15, 20, 25, and 30 °C), was adopted to represent the temperature sensitivity. The average Q10 values of AG, BG, CBH, XYL, NAG, LAP, and PHOS in the lakeshore wetland were 2.75 ± 0.76, 2.91 ± 0.69, 3.34 ± 0.75, 3.01 ± 0.69, 3.02 ± 1.11, 2.21 ± 0.39, and 3.33 ± 0.72, respectively. The Q10 values of all the seven soil extracellular enzymes significantly and positively correlated with flooding duration. The Q10 values of NAG, AG and BG were more sensitive to the changes in flooding duration than other enzymes. The Q10 values of the carbon, nitrogen, and phosphorus-related enzymes were mainly determined by flooding duration, pH, clay, and substrate quality. Flooding duration was the most dominant driver for the Q10 of BG, XYL, NAG, LAP, and PHOS. In contrast, the Q10 values of AG and CBH were primarily affected by pH and clay content, respectively. This study indicated that flooding regime was a key factor regulating soil biogeochemical processes of wetland ecosystems under global warming.
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Affiliation(s)
- Xingyun Huang
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang 330031, PR China; Jiangxi Poyang Lake Wetland Conservation and Restoration National Permanent Scientific Research Base, National Ecosystem Research Station of Jiangxi Poyang Lake Wetland, Nanchang University, Nanchang 330031, PR China; Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, PR China; Xiaoliang Research Station of Tropical Coastal Ecosystems, Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, and the CAS engineering Laboratory for Ecological Restoration of Island and Coastal Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, PR China
| | - Kexin Wang
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang 330031, PR China
| | - Xiuting Wen
- Jiangxi Institute of Ecological Civilization, School of Resources & Environment, Nanchang University, Nanchang 330031, PR China
| | - Jie Liu
- Jiangxi Institute of Ecological Civilization, School of Resources & Environment, Nanchang University, Nanchang 330031, PR China
| | - Yan Zhang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, PR China
| | - Jun Rong
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang 330031, PR China; Jiangxi Poyang Lake Wetland Conservation and Restoration National Permanent Scientific Research Base, National Ecosystem Research Station of Jiangxi Poyang Lake Wetland, Nanchang University, Nanchang 330031, PR China; Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, PR China
| | - Ming Nie
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, PR China
| | - Chun Fu
- School of Public Policy and Administration, School of Infrastructure Engineering, Jiangxi Regional Economic Research Institute, Nanchang University, Nanchang 330031, PR China
| | - Bofu Zheng
- Jiangxi Institute of Ecological Civilization, School of Resources & Environment, Nanchang University, Nanchang 330031, PR China
| | - Zhifen Yuan
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang 330031, PR China
| | - Leiqiang Gong
- Jiangxi Poyang Lake Wetland Conservation and Restoration National Permanent Scientific Research Base, National Ecosystem Research Station of Jiangxi Poyang Lake Wetland, Nanchang University, Nanchang 330031, PR China; Jiangxi Poyang Lake National Nature Reserve Authority, Nanchang 330038, PR China
| | - Huiying Zhan
- Jiangxi Poyang Lake Wetland Conservation and Restoration National Permanent Scientific Research Base, National Ecosystem Research Station of Jiangxi Poyang Lake Wetland, Nanchang University, Nanchang 330031, PR China; Jiangxi Poyang Lake National Nature Reserve Authority, Nanchang 330038, PR China
| | - Ruichang Shen
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang 330031, PR China; Jiangxi Poyang Lake Wetland Conservation and Restoration National Permanent Scientific Research Base, National Ecosystem Research Station of Jiangxi Poyang Lake Wetland, Nanchang University, Nanchang 330031, PR China; Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, PR China.
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Yan J, Hu X, Qian L, Fu X, Wang L. Tidal organic input restricts CO 2 sequestration capacity of estuarine wetlands. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:63580-63591. [PMID: 37055687 DOI: 10.1007/s11356-023-26642-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 03/21/2023] [Indexed: 04/15/2023]
Abstract
The inland and estuary wetlands that characterized by different natural environment perform distinctly in soil carbon (C) sink. It was deemed that estuary wetland has a higher organic C accumulation rate than inland wetland, due to its higher primary production and tidal organics input, thus having higher organic C sink capacity. While from CO2 budge in view, whether does the large organic input from tide restrict CO2 sequestration capacity of estuary wetland has not been discussed comparing with inland wetland. In this study, inland and estuary wetlands were selected to study the potential of CO2 sequestration capacity. It was found that inland wetland had most of soil organic carbon (SOC) derived from plant C, which brought remarkable organic C content and nourished higher microbial biomass, dehydrogenase, and β_glucosidase than estuary wetland. The estuary wetland instead accumulated less SOC, a considerable proportion of which came from tidal waters, therefore supporting lower microbial biomass and enzyme activities than that in inland wetland. However, estuary wetland was evaluated having higher capability in SOC mineralization than inland wetland in consideration of soil respiration (SR) and SR quotient. It was concluded that tidal organic C accelerated the SOC mineralization in estuarine wetland, thus weakening the CO2 sequestration. These results implied the importance of pollution control for reservation CO2 sink function in estuarine wetland.
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Affiliation(s)
- Jianfang Yan
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, Zhejiang, 321004, China
- Key Laboratory of Watershed Earth Surface Processes and Ecological Security, Zhejiang Normal University, Jinhua, Zhejiang, 321004, China
| | - Xin Hu
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, Zhejiang, 321004, China
- Key Laboratory of Watershed Earth Surface Processes and Ecological Security, Zhejiang Normal University, Jinhua, Zhejiang, 321004, China
| | - Liwei Qian
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, China
| | - Xiaohua Fu
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, China
| | - Lei Wang
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai, 200092, China.
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Singavarapu B, Du J, Beugnon R, Cesarz S, Eisenhauer N, Xue K, Wang Y, Bruelheide H, Wubet T. Functional Potential of Soil Microbial Communities and Their Subcommunities Varies with Tree Mycorrhizal Type and Tree Diversity. Microbiol Spectr 2023; 11:e0457822. [PMID: 36951585 PMCID: PMC10111882 DOI: 10.1128/spectrum.04578-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 02/11/2023] [Indexed: 03/24/2023] Open
Abstract
Soil microbial communities play crucial roles in the earth's biogeochemical cycles. Yet, their genomic potential for nutrient cycling in association with tree mycorrhizal type and tree-tree interactions remained unclear, especially in diverse tree communities. Here, we studied the genomic potential of soil fungi and bacteria with arbuscular (AM) and ectomycorrhizal (EcM) conspecific tree species pairs (TSPs) at three tree diversity levels in a subtropical tree diversity experiment (BEF-China). The soil fungi and bacteria of the TSPs' interaction zone were characterized by amplicon sequencing, and their subcommunities were determined using a microbial interkingdom co-occurrence network approach. Their potential genomic functions were predicted with regard to the three major nutrients carbon (C), nitrogen (N), and phosphorus (P) and their combinations. We found the microbial subcommunities that were significantly responding to different soil characteristics. The tree mycorrhizal type significantly influenced the functional composition of these co-occurring subcommunities in monospecific stands and two-tree-species mixtures but not in mixtures with more than three tree species (here multi-tree-species mixtures). Differentiation of subcommunities was driven by differentially abundant taxa producing different sets of nutrient cycling enzymes across the tree diversity levels, predominantly enzymes of the P (n = 11 and 16) cycles, followed by the N (n = 9) and C (n = 9) cycles, in monospecific stands and two-tree-species mixtures, respectively. Fungi of the Agaricomycetes, Sordariomycetes, Eurotiomycetes, and Leotiomycetes and bacteria of the Verrucomicrobia, Acidobacteria, Alphaproteobacteria, and Actinobacteria were the major differential contributors (48% to 62%) to the nutrient cycling functional abundances of soil microbial communities across tree diversity levels. Our study demonstrated the versatility and significance of microbial subcommunities in different soil nutrient cycling processes of forest ecosystems. IMPORTANCE Loss of multifunctional microbial communities can negatively affect ecosystem services, especially forest soil nutrient cycling. Therefore, exploration of the genomic potential of soil microbial communities, particularly their constituting subcommunities and taxa for nutrient cycling, is vital to get an in-depth mechanistic understanding for better management of forest soil ecosystems. This study revealed soil microbes with rich nutrient cycling potential, organized in subcommunities that are functionally resilient and abundant. Such microbial communities mainly found in multi-tree-species mixtures associated with different mycorrhizal partners can foster soil microbiome stability. A stable and functionally rich soil microbiome is involved in the cycling of nutrients, such as carbon, nitrogen, and phosphorus, and their combinations could have positive effects on ecosystem functioning, including increased forest productivity. The new findings could be highly relevant for afforestation and reforestation regimes, notably in the face of growing deforestation and global warming scenarios.
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Affiliation(s)
- Bala Singavarapu
- Department of Community Ecology, UFZ-Helmholtz Centre for Environmental Research, Halle, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle, Germany
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
| | - Jianqing Du
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
- Beijing Yanshan Earth Critical Zone National Research Station, University of Chinese Academy of Sciences, Beijing, China
| | - Rémy Beugnon
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
- Leipzig Institute for Meteorology, Universität Leipzig, Leipzig, Germany
- CEFE, Université Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Simone Cesarz
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
- Institute of Biology, Leipzig University, Leipzig, Germany
| | - Kai Xue
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
- Beijing Yanshan Earth Critical Zone National Research Station, University of Chinese Academy of Sciences, Beijing, China
| | - Yanfen Wang
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
- Beijing Yanshan Earth Critical Zone National Research Station, University of Chinese Academy of Sciences, Beijing, China
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources, Chinese Academy of Sciences, Beijing, China
| | - Helge Bruelheide
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle, Germany
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
| | - Tesfaye Wubet
- Department of Community Ecology, UFZ-Helmholtz Centre for Environmental Research, Halle, Germany
- German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
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Wang M, Qi X, Shi Y, Zhao J, Ahmad S, Akhtar K, Chen B, Lian T, He B, Wen R. Sugarcane straw returning is an approaching technique for the improvement of rhizosphere soil functionality, microbial community, and yield of different sugarcane cultivars. Front Microbiol 2023; 14:1133973. [PMID: 36998394 PMCID: PMC10043380 DOI: 10.3389/fmicb.2023.1133973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 02/24/2023] [Indexed: 03/15/2023] Open
Abstract
Sugarcane straw returned to the field has rapidly increased due to the bane on straw burning in China. Straw returning of new sugarcane cultivars has been practiced in the fields. Still, its response has not been explored on soil functionality, microbial community and yield of different sugarcane cultivars. Therefore, a comparison was made between an old sugarcane cultivar ROC22 and a new sugarcane cultivar Zhongzhe9 (Z9). The experimental treatments were: without (R, Z), with straw of the same cultivar (RR, ZZ), and with straw of different cultivars (RZ, ZR). Straw returning improved the contents of soil total nitrogen (TN by 73.21%), nitrate nitrogen (NO3—N by 119.61%), soil organic carbon (SOC by 20.16%), and available potassium (AK by 90.65%) at the jointing stage and were not significant at the seedling stage. The contents of NO3—N was 31.94 and 29.58%, available phosphorus (AP 53.21 and 27.19%), and available potassium (AK 42.43 and 11.92%) in RR and ZZ were more than in RZ and ZR. Straw returning with the same cultivar (RR, ZZ) significantly increased the richness and diversity of the rhizosphere microbial community. The microbial diversity of cultivar Z9 (treatment Z) was greater than that of cultivar ROC22 (Treatment R). In the rhizosphere, the relative abundance of beneficial microorganisms Gemmatimonadaceae, Trechispora, Streptomyces, Chaetomium, etc., increased after the straw returned. Sugarcane straw enhanced the activity of Pseudomonas and Aspergillus and thus increased the yield of sugarcane., The richness and diversity of the rhizosphere microbial community of Z9 increased at maturity. In ROC22, bacterial diversity increased, and fungal diversity decreased. These findings collectively suggested that the impact of Z9 straw returning was more beneficial than ROC22 on the activity of rhizosphere microorganism’s soil functionality and sugarcane production.
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Affiliation(s)
- Mengrong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
| | - Xiaohang Qi
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
| | - Yujie Shi
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
| | - Junyang Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
| | - Shakeel Ahmad
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
| | - Kashif Akhtar
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
| | - Baoshan Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
- Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety, College of Agriculture, Guangxi University, Nanning, China
| | - Tengxiang Lian
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Bing He
- Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety, College of Agriculture, Guangxi University, Nanning, China
- *Correspondence: Bing He,
| | - Ronghui Wen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Ministry and Province Co-sponsored Collaborative Innovation Center for Sugarcane and Sugar Industry, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning, China
- Ronghui Wen,
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20
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Chen HM, Shi FX, Wang XW, Zhang XH, Mao R. Conversion of drylands to paddy fields on former wetlands restores soil organic carbon by accumulating labile carbon fractions in the Sanjiang Plain, northeast China. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2023; 103:599-605. [PMID: 36468612 DOI: 10.1002/jsfa.12171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Revised: 07/30/2022] [Accepted: 08/09/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND Since the 1990s, drylands have been extensively converted to rice paddy fields on the former wetlands in the Sanjiang Plain of northeast China. However, the influence of this successiveland-use change from native wetlands to drylands to rice paddy fields on soil organic carbon (C) dynamics remains unexplored. Here, we compared the difference in soil organic C stock among native wetlands, drylands, and paddy fields, and then used a two-step acid hydrolysis approach to examine the effect of this land-use change on labile C I (LPI-C), labile C II (LPII-C), and recalcitrant C (RP-C) fractions at depths of 0-15 cm, 15-30 cm, and 30-50 cm. RESULTS Soil organic C stock at a depth of 0-50 cm was reduced by 79% after the conversion of wetlands to drylands but increased by 24% when drylands were converted to paddy fields. Compared with wetlands, paddy fields had 74% lower soil organic C stock at a depth of 0-50 cm. The conversion of wetlands to drylands reduced the concentrations of LPI-C, LPII-C, and RP-C fractions at each soil depth. However, land-use change from drylands to paddy fields only increased the concentrations of LPI-C and LPII-C fractions at the 0-15 cm and 30-50 cm depths. CONCLUSION The conversion of drylands to paddy lands on former wetlands enhances the soil organic C stock by promoting labile C fraction accumulation, and labile C fractions are more sensitive to this successive land-use change than recalcitrant C fractions in the Sanjiang Plain of northeast China. © 2022 Society of Chemical Industry.
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Affiliation(s)
- Hui-Min Chen
- Key Laboratory of National Forestry and Grassland Administration on Forest Ecosystem Protection and Restoration of Poyang Lake Watershed, College of Forestry, Jiangxi Agricultural University, Nanchang, China
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Fu-Xi Shi
- Key Laboratory of National Forestry and Grassland Administration on Forest Ecosystem Protection and Restoration of Poyang Lake Watershed, College of Forestry, Jiangxi Agricultural University, Nanchang, China
| | - Xian-Wei Wang
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Xin-Hou Zhang
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
- School of Environment, Nanjing Normal University, Nanjing, China
| | - Rong Mao
- Key Laboratory of National Forestry and Grassland Administration on Forest Ecosystem Protection and Restoration of Poyang Lake Watershed, College of Forestry, Jiangxi Agricultural University, Nanchang, China
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
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21
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Abulaizi M, Chen M, Yang Z, Hu Y, Zhu X, Jia H. Response of soil bacterial community to alpine wetland degradation in arid Central Asia. FRONTIERS IN PLANT SCIENCE 2023; 13:990597. [PMID: 36684714 PMCID: PMC9848402 DOI: 10.3389/fpls.2022.990597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
Abstract
A large number of studies have reported the importance of bacterial communities in ecosystems and their responses to soil degradation, but the response mechanism in arid alpine wetlands is still unclear. Here, the non-degraded (ND), slightly degraded (SD), and heavily degraded (HD) regions of Bayinbuluk alpine wetland were used to analyzed the diversity, structure and function of bacterial communities in three degraded wetlands using 16S rRNA. The results showed that with the increase of degradation degree, the content of soil moisture (SM) and available nitrogen (AN) decreased significantly, plant species richness and total vegetation coverage decreased significantly, Cyperaceae (Cy) coverage decreased significantly, and Gramineae (Gr) coverage increased significantly. Degradation did not significantly affect the diversity of the bacterial community, but changed the relative abundance of the community structure. Degradation significantly increased the relative abundance of Actinobacteria (ND: 3.95%; SD: 7.27%; HD: 23.97%) and Gemmatimonadetes (ND: 0.39%; SD: 2.17%; HD: 10.78%), while significantly reducing the relative abundance of Chloroflexi (ND: 13.92%; SD: 8.68%; HD: 3.55%) and Nitrospirae (ND: 6.18%; SD: 0.45%; HD: 2.32%). Degradation significantly reduced some of the potential functions in the bacterial community associated with the carbon (C), nitrogen (N) and sulfur (S) cycles, such as hydrocarbon degradation (ND: 25.00%; SD: 1.74%; HD: 6.59%), such as aerobic ammonia oxidation (ND: 5.96%; SD: 22.82%; HD: 4.55%), and dark sulfide oxidation (ND: 32.68%; SD: 0.37%; HD: 0.28%). Distance-based redundancy analysis (db-RDA) results showed that the bacteria community was significantly related to the TC (total carbon) and Gr (P < 0.05). The results of linear discriminant analysis effect size (LEfSe) analysis indicate significant enrichments of Alphaproteobacteria and Sphingomonas in the HD area. The vegetation communities and soil nutrients changed significantly with increasing soil degradation levels, and Sphingomonas could be used as potential biomarker of degraded alpine wetlands.
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Affiliation(s)
- Maidinuer Abulaizi
- College of Resources and Environment, Xinjiang Agricultural University, Urumqi, China
| | - Mo Chen
- College of Grassland Science, Xinjiang Agricultural University, Urumqi, China
| | - Zailei Yang
- College of Resources and Environment, Xinjiang Agricultural University, Urumqi, China
| | - Yang Hu
- College of Resources and Environment, Xinjiang Agricultural University, Urumqi, China
| | - Xinping Zhu
- College of Resources and Environment, Xinjiang Agricultural University, Urumqi, China
- Xinjiang Key Laboratory of Soil and Plant Ecological Processes, Urumqi, China
| | - Hongtao Jia
- College of Resources and Environment, Xinjiang Agricultural University, Urumqi, China
- Xinjiang Key Laboratory of Soil and Plant Ecological Processes, Urumqi, China
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22
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Guo Y, Boughton EH, Liao HL, Sonnier G, Qiu J. Direct and indirect pathways of land management effects on wetland plant litter decomposition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 854:158789. [PMID: 36122731 DOI: 10.1016/j.scitotenv.2022.158789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 08/27/2022] [Accepted: 09/11/2022] [Indexed: 06/15/2023]
Abstract
Litter decomposition is a fundamental process underpinning multiple ecosystem services. Despite a long history of research on decomposition, direct and indirect effects of multiple interactive land management on wetland decomposition yet remain less well understood. Here, we used a long-term whole-ecosystem wetland experiment in south-central Florida to investigate interactive effects of land-use intensification, cattle grazing and prescribed fire on in situ wetland plant litter decomposition. We further examined the direct and indirect pathways of land management effects on litter decomposition through changes in associated litter traits, soil properties, and soil microbial attributes using structural equation models. We used the litterbag technique that quantifies decomposition rates (k-values) and recalcitrant fractions (A-values). Our results showed that land-use intensification increased k-values in ungrazed wetlands and decreased k-values in grazed wetlands, but consistently reduced A-values regardless of other treatments. Prescribed fire individually suppressed litter decomposition by reducing k and increasing A. Further, these effects occurred through altering litter, soil, and microbial properties. Our results revealed that litter traits and soil properties were the first two strongest factors in determining wetland decomposition processes. Particularly, litter P and Mg contents and soil P and K contents were the best predictors for k, while litter Ca and lignin contents and soil pH, N and water content best predicted A. Moreover, microbial traits exhibited interactive effects with litter and soil properties to affect wetland litter decomposition. Our research suggests that cattle grazing could buffer against stimulating effect of land-use intensification on decomposition rates and thus avoid nutrient releases pulses. Our study further indicates that land-use intensification and fire suppression in subtropical wetlands could promote organic matter depletion and thus nutrient loss, highlighting the need to reduce anthropogenic disturbances to natural wetlands to maintain their capacity for providing associated regulating and supporting services.
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Affiliation(s)
- Yuxi Guo
- School of Forest, Fisheries, and Geomatics Sciences, Fort Lauderdale Research and Education Center, University of Florida, 3205 College Ave, Davie, FL 33314, USA.
| | - Elizabeth H Boughton
- Archbold Biological Station, Buck Island Ranch, 300 Buck Island Ranch Road, Lake Placid, FL 33852, USA
| | - Hui-Ling Liao
- Soil and Water Sciences Department, North Florida Research and Education Center, University of Florida, 155 Research Road, Quincy, FL 32351, USA
| | - Grégory Sonnier
- Archbold Biological Station, Buck Island Ranch, 300 Buck Island Ranch Road, Lake Placid, FL 33852, USA
| | - Jiangxiao Qiu
- School of Forest, Fisheries, and Geomatics Sciences, Fort Lauderdale Research and Education Center, University of Florida, 3205 College Ave, Davie, FL 33314, USA.
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23
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Ye G, Chen J, Yang P, Hu HW, He ZY, Wang D, Cao D, Zhang W, Wu B, Wu Y, Wei X, Lin Y. Non-native Plant Species Invasion Increases the Importance of Deterministic Processes in Fungal Community Assembly in a Coastal Wetland. MICROBIAL ECOLOGY 2022:10.1007/s00248-022-02144-z. [PMID: 36372840 DOI: 10.1007/s00248-022-02144-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 11/07/2022] [Indexed: 06/16/2023]
Abstract
Fungal communities are essential to the maintenance of soil multifunctionality. Plant invasion represents a growing challenge for the conservation of soil biodiversity across the globe, but the impact of non-native species invasion on fungal diversity, community structure, and assembly processes remains largely unknown. Here, we examined the diversity, community composition, functional guilds, and assembly process of fungi at three soil depths underneath a native species, three non-native species, and a bare tidal flat from a coastal wetland. Plant species was more important than soil depth in regulating the diversity, community structure, and functional groups of fungi. Non-native species, especially Spartina alterniflora, increased fungal diversity, altered fungal community structure, and increased the relative abundance of saprotrophic and pathogenic fungi in coastal wetland soils. Stochastic processes played a predominant role in driving fungal community assembly, explaining more than 70% of the relative contributions. However, compared to a native species, non-native species, especially S. alterniflora, reduced the relative influence of stochastic processes in fungal community assembly. Collectively, our results provide novel evidence that non-native species can increase fungal diversity, the relative abundance of saprotrophic and pathogenic fungi, and deterministic processes in the assembly of fungi in coastal wetlands, which can expand our knowledge of the dynamics of fungal communities in subtropical coastal wetlands.
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Affiliation(s)
- Guiping Ye
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Jianming Chen
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Ping Yang
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Hang-Wei Hu
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, VIC 3010, Melbourne, Australia
| | - Zi-Yang He
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, VIC 3010, Melbourne, Australia
| | - Dan Wang
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Dingding Cao
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Wenbin Zhang
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Bingyu Wu
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Yonghong Wu
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China
| | - Xiangying Wei
- Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China.
| | - Yongxin Lin
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China.
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Zhou C, Zhang Y, Li S, Jiang Q, Chen H, Zhu T, Xu X, Liu H, Qiu S, Wu J, Nie M, Li B. Exogenous nitrogen from riverine exports promotes soil methane production in saltmarshes in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156203. [PMID: 35618128 DOI: 10.1016/j.scitotenv.2022.156203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Revised: 05/19/2022] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Abstract
Methane emissions from saltmarshes can potentially promote climate warming. Soil methane production is positively correlated with methane emissions from saltmarshes. Understanding the factors influencing soil methane production will improve the prediction of methane emissions, but an investigation of these factors has not been conducted in saltmarshes in China. We collected soils from native Phragmites australis and invasive Spartina alterniflora saltmarshes along the coast of China; the soil potential methane production (PMP) was determined by incubation experiments. The large-scale investigation results showed that the ratios of methanogens relative to sulfate-reducing bacteria (RMRS) and total organic carbon (TOC) were positively correlated with soil PMP for both species. Dissolved inorganic nitrogen (DIN) was positively correlated with the soil PMP of P. australis saltmarshes, and plant biomass was positively correlated with the soil PMP of S. alterniflora saltmarshes. Our results showed that exogenous nitrogen from riverine exports was positively correlated with DIN and plant biomass in both P. australis and S. alterniflora saltmarshes. In addition, exogenous nitrogen was also positively correlated with TOC in S. alterniflora saltmarshes. Consequently, exogenous nitrogen indirectly promoted soil methane production in P. australis saltmarshes by increasing the DIN and promoted soil methane production in S. alterniflora saltmarshes by enhancing the TOC and plant biomass. Moreover, we found that the promoting effect of DIN on the soil PMP of P. australis saltmarshes increased when the incubation temperature increased from 15 °C to 25 °C. Thus, the promoting effect of exogenous nitrogen on the soil methane production in P. australis saltmarshes might be strengthened in the peak of growing season. Our findings are the first to confirm that exogenous nitrogen inputs from rivers indirectly promote soil methane production in P. australis and S. alterniflora saltmarshes and provide new insights into the factors responsible for soil methane production in saltmarshes.
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Affiliation(s)
- Chenhao Zhou
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Yan Zhang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Songshuo Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Qiuyue Jiang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Hongyang Chen
- Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Ting Zhu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Xiao Xu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Hao Liu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Shiyun Qiu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Jihua Wu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Ming Nie
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Bo Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai 200438, China; Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Centre for Invasion Biology, Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming 650504, Yunnan, China.
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Bentley SB, Tomscha SA, Deslippe JR. Indictors of wetland health improve following small-scale ecological restoration on private land. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 837:155760. [PMID: 35533865 DOI: 10.1016/j.scitotenv.2022.155760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 05/02/2022] [Accepted: 05/03/2022] [Indexed: 06/14/2023]
Abstract
Globally wetlands are imperilled and restoring these highly productive and biodiverse ecosystems is key to regaining their lost function and health. Much of the fertile, low-lying land that was historically wetland is now farmed, so privately-owned locations play critical roles in regaining space for wetlands. However, wetland restoration on private property is often small-scale and supported by minimal funding and expertise. Little is known about what these efforts achieve, and what contexts facilitate the greatest gains in wetland health. Using a paired plot design for 18 restored and 18 unrestored wetlands, we aimed to understand changes in wetland health following restoration on private property. We characterised plant and microbial communities and soil characteristics following wetland restoration and explored how environmental settings of restored wetlands related to the clustering of wetland health indicators. We found that all indicators of wetland health significantly increased following restoration except for the ratio of Gram negative to Gram positive bacteria. Restoration enhanced plant alpha and beta diversity, adding ~13 native plant species per plot. Soils in restored wetlands contained 20% more organic matter, and 25% more microbial biomass, which was driven by an increased abundance of fungi. Restoration reduced soil bulk density by 0.19 g-1 cm3 and Olsen Phosphorus by 23%. These effects on soil physical characteristics and microbial communities were strongest in the wettest locations. Restored wetlands clustered into three main groups based on indicators of wetland health. Hydrological flow explained the clustering of wetlands, with riverine wetlands exhibiting greater indicators of recovery than depressional wetlands, suggesting that hydrological flow may influence post-restoration recovery. Overall, this study shows that small-scale wetland restoration on private land improved wetland health, providing evidence that it can be an effective use of marginal agricultural land.
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Affiliation(s)
- Shannon B Bentley
- School of Biological Sciences, Victoria University of Wellington, Wellington 6140, New Zealand
| | - Stephanie A Tomscha
- School of Biological Sciences, Victoria University of Wellington, Wellington 6140, New Zealand; Centre for Biodiversity and Restoration Ecology, Victoria University of Wellington, Wellington 6140, New Zealand
| | - Julie R Deslippe
- School of Biological Sciences, Victoria University of Wellington, Wellington 6140, New Zealand; Centre for Biodiversity and Restoration Ecology, Victoria University of Wellington, Wellington 6140, New Zealand.
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Chen X, Luo M, Tan J, Zhang C, Liu Y, Huang J, Tan Y, Xiao L, Xu Z. Salt-tolerant plant moderates the effect of salinity on soil organic carbon mineralization in a subtropical tidal wetland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 837:155855. [PMID: 35561913 DOI: 10.1016/j.scitotenv.2022.155855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 05/05/2022] [Accepted: 05/07/2022] [Indexed: 06/15/2023]
Abstract
Although salinization is widely known to affect cycling of soil carbon (C) in tidal freshwater wetlands, the role of the presence or absence of plants in mediating the responses of soil organic carbon (SOC) mineralization to salinization is poorly understood. In this study, we translocated soils collected from a tidal freshwater wetland to sites with varying salinities along a subtropical estuarine gradient and established unplanted and planted (with the salt-tolerant plant Cyperus malaccensis Lam.) mesocosms at each site. We simultaneously investigated cumulative soil CO2 emissions, C-acquiring enzyme activities, availability of labile organic C (LOC), and structures of bacterial and fungal communities. Overall, in the planted mesocosm, the soil LOC content and the activities of β-1,4-glucosidase, cellobiohydrolase, phenol oxidase, and peroxidase increased with salinization. However, in the unplanted mesocosm, soil LOC content decreased with increasing salinity, whereas all the C-acquiring enzyme activities did not change. In addition, salinization favored the dominance of bacterial and fungal copiotrophs (e.g., γ-Proteobacteria, Bacteroidetes, Firmicutes, and Ascomycota) in the planted mesocosms. Contrarily, in the unplanted mesocosms salinization favored bacterial and fungal oligotrophs (e.g., α-Proteobacteria, Chloroflexi, Acidobacteria, and Basidiomycota). In both planted and unplanted mesocosms, cumulative soil CO2 emissions were affected by soil LOC content, activities of C-acquiring enzymes, and microbial C-use trophic strategies. Overall, cumulative soil CO2 emissions increased by 35% with increasing salinity in the planted mesocosm but decreased by 37% as salinity increased in the unplanted mesocosm. Our results demonstrate that the presence or absence of salt-tolerant plants can moderate the effect of salinity on SOC mineralization in tidal wetland soils. Future C prediction models should embed both planted and unplanted modules to accurately simulate cycling of soil C in tidal wetlands under sea level rise.
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Affiliation(s)
- Xin Chen
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; College of Environment and Safety Engineering, Fuzhou University, Fuzhou 350108, China
| | - Min Luo
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; College of Environment and Safety Engineering, Fuzhou University, Fuzhou 350108, China.
| | - Ji Tan
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China; College of Geography Science, Fujian Normal University, Fuzhou 35007, China
| | - Changwei Zhang
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; College of Environment and Safety Engineering, Fuzhou University, Fuzhou 350108, China
| | - Yuxiu Liu
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China; College of Geography Science, Fujian Normal University, Fuzhou 35007, China
| | - Jiafang Huang
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China; College of Geography Science, Fujian Normal University, Fuzhou 35007, China
| | - Yang Tan
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Leilei Xiao
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Zhanghua Xu
- Research Center of Geography and Ecological Environment, Fuzhou University, Fuzhou 350108, China; College of Environment and Safety Engineering, Fuzhou University, Fuzhou 350108, China.
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27
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Yang A, Kang X, Li Y, Zhang X, Zhang K, Kang E, Yan Z, Li M, Wang X, Niu Y, Yan L. Alpine wetland degradation reduces carbon sequestration in the Zoige Plateau, China. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.980441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Alpine wetland plays an important role in the global carbon balance but are experiencing severe degradation under climate change and human activities. With the aim to clarify the effect of alpine wetland degradation on carbon fluxes (including net ecosystem CO2 exchange, NEE; ecosystem respiration, ER; gross ecosystem productivity, GEP, and CH4 flux), we investigated 12 sites and measured carbon fluxes using the static chamber method in the Zoige alpine wetland during August 2018, including undegraded wetland (UD), lightly degraded wetland (LD), moderately degraded wetland (MD), and severely degraded wetland (SD). The results showed that carbon sink strengths differ among the Zoige wetlands with different degradation stages during the growing season. From UD to LD, the rate of carbon sequestration (mean value of NEE) increased by 25.70%; however, from LD to SD, it decreased by 81.67%. Wetland degradation significantly reduced soil water content (SWC), soil organic carbon (SOC), microbial biomass carbon (MBC), and microbial biomass nitrogen (MBN). NEE was significantly correlated with MBC and MBN, while ER was positively correlated with ST but negatively correlated with SOC (P < 0.01). Among all measured environmental factors, GEP was positively correlated with pH (P < 0.01), while CH4 flux was most closely correlated with SOC, SWC, MBC, MBN, and ST (P < 0.001), and was also affected by pH and NO3– content (P < 0.01). These results suggest that the capacity of carbon sequestration in the Zoige wetlands reduced with intensification of the degradation. This study provides a reference for sustainably managing and utilizing degraded wetlands under climate change.
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Elhaj Baddar Z, Xu X. Evaluation of changes in the microbial community structure in the sediments of a constructed wetland over the years. Arch Microbiol 2022; 204:552. [PMID: 35953591 DOI: 10.1007/s00203-022-03157-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 07/25/2022] [Accepted: 07/27/2022] [Indexed: 11/28/2022]
Abstract
This study presents the results of the long term (2007-2014) monitoring of the microbial community structure in the surface sediments of the H-02 constructed wetland system, which was built on the Savannah River Site in Aiken, SC, USA, to treat the waste water generated at the Tritium facility. Microbial community structure provides valuable information about the functioning of constructed wetlands and helps understand the biogeochemical cycling of nutrients and contaminants. Phospholipids fatty acid (PLFA) analysis and qPCR were used to identify major bacterial phyla in the sediments. The physiochemical properties of the sediments were also used to deduce potential effects on the microbial community structure over the years. Sulfate-reducing bacteria (SRB) were the most dominant bacterial groups, and their prevalence was progressively increasing throughout the years most likely on the account of methane producers. Concentrations of trace metals (copper and zinc) were negatively associated with methane producers and oxidizer while positively correlated with SRB. Overall, the H-02 wetland system was efficient in immobilizing copper and zinc through the anaerobic respiration of sulfate by SRB and minimizing methane emission through the progressive elimination of methane producers by SRB and Geobacter. The aim of this study was to monitor the changes in the microbial community structure in the surface sediments of a constructed wetland during the first 7 years of operation.
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Affiliation(s)
- Zeinah Elhaj Baddar
- Savannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC, 29802, USA.
| | - Xiaoyu Xu
- Savannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC, 29802, USA
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29
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Speer KA, Teixeira TSM, Brown AM, Perkins SL, Dittmar K, Ingala MR, Wultsch C, Krampis K, Dick CW, Galen SC, Simmons NB, Clare EL. Cascading effects of habitat loss on ectoparasite-associated bacterial microbiomes. ISME COMMUNICATIONS 2022; 2:67. [PMID: 37938296 PMCID: PMC9723575 DOI: 10.1038/s43705-022-00153-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 07/05/2022] [Accepted: 07/18/2022] [Indexed: 11/04/2023]
Abstract
Suitable habitat fragment size, isolation, and distance from a source are important variables influencing community composition of plants and animals, but the role of these environmental factors in determining composition and variation of host-associated microbial communities is poorly known. In parasite-associated microbial communities, it is hypothesized that evolution and ecology of an arthropod parasite will influence its microbiome more than broader environmental factors, but this hypothesis has not been extensively tested. To examine the influence of the broader environment on the parasite microbiome, we applied high-throughput sequencing of the V4 region of 16S rRNA to characterize the microbiome of 222 obligate ectoparasitic bat flies (Streblidae and Nycteribiidae) collected from 155 bats (representing six species) from ten habitat fragments in the Atlantic Forest of Brazil. Parasite species identity is the strongest driver of microbiome composition. To a lesser extent, reduction in habitat fragment area, but not isolation, is associated with an increase in connectance and betweenness centrality of bacterial association networks driven by changes in the diversity of the parasite community. Controlling for the parasite community, bacterial network topology covaries with habitat patch area and exhibits parasite-species specific responses to environmental change. Taken together, habitat loss may have cascading consequences for communities of interacting macro- and microorgansims.
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Affiliation(s)
- Kelly A Speer
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY, USA.
- Center for Conservation Genomics, Smithsonian National Zoological Park and Conservation Biology Institute, Washington, D.C, USA.
- Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, D.C, USA.
| | | | - Alexis M Brown
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, USA
| | - Susan L Perkins
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY, USA
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA
- Division of Science, City College of New York, New York, NY, USA
| | - Katharina Dittmar
- Department of Biological Sciences, University at Buffalo, State University of New York, Buffalo, NY, USA
| | - Melissa R Ingala
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY, USA
- Center for Conservation Genomics, Smithsonian National Zoological Park and Conservation Biology Institute, Washington, D.C, USA
- Department of Biological Sciences, Fairleigh Dickinson University, Madison, NJ, USA
| | - Claudia Wultsch
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA
- Bioinformatics and Computational Genomics Laboratory, Department of Biological Sciences, Hunter College, City University of New York, New York, NY, USA
| | - Konstantinos Krampis
- Bioinformatics and Computational Genomics Laboratory, Department of Biological Sciences, Hunter College, City University of New York, New York, NY, USA
- Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA
| | - Carl W Dick
- Department of Biology, Western Kentucky University, Bowling Green, KY, USA
- Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Spencer C Galen
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY, USA
- Biology Department, University of Scranton, Scranton, PA, USA
| | - Nancy B Simmons
- Richard Gilder Graduate School, American Museum of Natural History, New York, NY, USA
- Department of Mammalogy, Division of Vertebrate Zoology, American Museum of Natural History, New York, NY, USA
| | - Elizabeth L Clare
- School of Biological and Chemical Sciences, Queen Mary University of London, London, GBR, UK
- Department of Biology, York University, Toronto, ON, Canada
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30
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Cavallet BV, Silva ER, Baretta CRDM, Rezende RDS. Effect of agriculture land use on standard cellulosic substrates breakdown and invertebrates’ community. COMMUNITY ECOL 2022. [DOI: 10.1007/s42974-022-00103-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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The Effects of Biochar on Microbial Community Composition in and Beneath Biological Soil Crusts in a Pinus massoniana Lamb. Plantation. FORESTS 2022. [DOI: 10.3390/f13071141] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Biological soil crusts (BSCs) hold promise for reducing soil erosion in subtropical forest plantations, and microorganisms profoundly affect the formation and development of BSCs. The effects of biochar as a soil conditioner on the diversity and structure of soil microbial communities in BSCs are largely unknown. Therefore, our aim was to determine how biochar might improve microbial community composition and BSC function. Herein, a field experiment was conducted in a P. massoniana plantation; the addition of biochar was the treatment, and no biochar addition was the control (CK). Soil microbial communities associated with moss BSCs (in and beneath BSCs) with and without the addition of biochar were analyzed by Illumina sequencing technology. The results showed that Acidobacteria (28.35%), Proteobacteria (22.53%), Actinobacteria (17.41%), and Chloroflexi (16.74%) were the dominant bacterial phyla, whereas Basidiomycota (70.00%) and Ascomycota (22.76%) were the dominant fungal phyla in BSCs. The soil bacterial and fungal OTU number and richness in BSCs were higher than those beneath BSCs. The relative abundances of Acidobacteria, Chloroflexi, and Basidiomycota were higher in BSCs than beneath BSCs, whereas the relative abundances of Actinobacteria, Firmicutes, Ascomycota, and Chytridiomycota showed the opposite trend. Beneath BSCs, biochar addition increased the soil bacterial OTU number and richness (ACE index and Chao1) but decreased the soil fungal OTU number and richness. Biochar had little effect on soil microbial community structures in BSCs; however, beneath BSCs, it significantly increased the relative abundances of Acidobacteria, Chloroflexi, and Basidiomycota and significantly decreased the relative abundances of Actinobacteria, Firmicutes, Ascomycota, and Chytridiomycota. Biochar-induced changes in soil microbial communities were related to soil environmental factors, especially urease activity, organic matter content, pH, total nitrogen content, and sucrase activity. We demonstrated the different effects of biochar on soil microbial communities in and beneath the BSCs of subtropical forest plantations; these findings provided new insights into soil stabilization with BSCs below the forest canopy in subtropical regions.
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Zamora S, Zitácuaro-Contreras I, Betanzo-Torres EA, Herazo LCS, Sandoval-Herazo M, Vidal-Álvarez M, Marín-Muñiz JL. Carbon Pool in Mexican Wetland Soils: Importance of the Environmental Service. Life (Basel) 2022; 12:life12071032. [PMID: 35888120 PMCID: PMC9322611 DOI: 10.3390/life12071032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 07/07/2022] [Accepted: 07/07/2022] [Indexed: 12/03/2022] Open
Abstract
Mexican wetlands are not included in Earth system models around the world, despite being an important carbon store in the wetland soils in the tropics. In this review, five different types of wetlands were observed (marshes, swamps, flooded grasslands, flooded palms and mangroves) in which their carbon pool/carbon sequestrations in Mexican zones were studied. In addition, it was shown that swamps (forested freshwater wetlands) sequestered more carbon in the soil (86.17 ± 35.9 Kg C m−2) than other types of wetlands (p = 0.011); however, these ecosystems are not taken into consideration by the Mexican laws on protection compared with mangroves (34.1 ± 5.2 Kg C m−2). The carbon pool detected for mangrove was statistically similar (p > 0.05) to data of carbon observed in marshes (34.1 ± 5.2 Kg C m−2) and flooded grassland (28.57 ± 1.04 Kg C m−2) ecosystems. The value of carbon in flooded palms (8.0 ± 4.2 Kg C m−2) was lower compared to the other wetland types, but no significant differences were found compared with flooded grasslands (p = 0.99). Thus, the carbon deposits detected in the different wetland types should be taken into account by policy makers and agents of change when making laws for environmental protection, as systematic data on carbon dynamics in tropical wetlands is needed in order to allow their incorporation into global carbon budgets.
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Affiliation(s)
- Sergio Zamora
- Facultad de Ingeniería, Construcción y Habitad, Universidad Veracruzana, Bv. Adolfo Ruíz Cortines 455, Costa Verde, Boca del Rio 94294, Veracruz, Mexico;
| | - Irma Zitácuaro-Contreras
- Academy of Sustainable Regional Development, El Colegio de Veracruz, Xalapa 91000, Veracruz, Mexico;
| | - Erick Arturo Betanzo-Torres
- Wetlands and Environmental Sustainability Laboratory, Division of Graduate Studies and Research, Tecnológico Nacional de México/Instituto Tecnológico de Misantla, Veracruz, Km 1.8 Carretera a Loma del Cojolite, Misantla 93821, Veracruz, Mexico; (E.A.B.-T.); (L.C.S.H.)
| | - Luis Carlos Sandoval Herazo
- Wetlands and Environmental Sustainability Laboratory, Division of Graduate Studies and Research, Tecnológico Nacional de México/Instituto Tecnológico de Misantla, Veracruz, Km 1.8 Carretera a Loma del Cojolite, Misantla 93821, Veracruz, Mexico; (E.A.B.-T.); (L.C.S.H.)
| | - Mayerlin Sandoval-Herazo
- Department of Business Management Engineering, Tecnológico Nacional de México/Instituto Tecnológico de Misantla, Veracruz, Km 1.8 Carretera a Loma del Cojolite, Misantla 93821, Veracruz, Mexico;
| | - Monserrat Vidal-Álvarez
- Academy of Sustainable Regional Development, El Colegio de Veracruz, Xalapa 91000, Veracruz, Mexico;
- Correspondence: (M.V.-Á.); (J.L.M.-M.); Tel.: +52-2-281-261-814 (M.V.-Á.); +52-2-281-624-680 (J.L.M.-M.)
| | - José Luis Marín-Muñiz
- Academy of Sustainable Regional Development, El Colegio de Veracruz, Xalapa 91000, Veracruz, Mexico;
- Correspondence: (M.V.-Á.); (J.L.M.-M.); Tel.: +52-2-281-261-814 (M.V.-Á.); +52-2-281-624-680 (J.L.M.-M.)
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Yang S, Shu R, Yin X, Long Y, Yuan J. Response of Soil Microbial Community Structure Mediated by Sulfur-Induced Resistance Against Kiwifruit Bacterial Canker. Front Microbiol 2022; 13:883463. [PMID: 35707168 PMCID: PMC9190984 DOI: 10.3389/fmicb.2022.883463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 04/08/2022] [Indexed: 11/25/2022] Open
Abstract
Kiwifruit bacterial canker caused by Pseudomonas syringae pv. actinidiae (Psa) is a major threat to kiwifruit worldwide, and effective control measures are still lacking. Sulfur, as a mineral, has been proved to improve plants' resistance to pathogens. It is of great significance to study the effect of sulfur on rhizosphere microorganisms in kiwifruit planting areas infected by Psa for controlling kiwifruit canker. In this study, the sulfur powder and organic fertilizer were mixed as base fertilizer to treat the soil in the area where kiwifruit bacterial canker occurs. We investigated the incidence of kiwifruit bacterial canker in 2018 and 2019 after sulfur application and the changes in microbial characteristics and community composition structure in the kiwifruit rhizosphere by using the plate-counting method and high-throughput sequencing technology. Fertilization treatments of kiwifruit roots with sulfur and organic fertilizer reduced kiwifruit bacterial canker severity. The diversity of soil microbial communities increased significantly after sulfur application in the range of 1.0~2.0 kg/m3. In particular, the bacterial genera level showed a high diversity after 2 years of sulfur application, reaching more than 516 genera. Furthermore, sulfur treatment resulted in a significant increase in specific microbial taxa, including members of the Acidothermus, norank_f__HSB_OF53-F07, and norank_f __Acidobacteriaceae__Subgroup_1. Moreover, the proportion of the dominant bacteria Acidothermus in the population showed an increasing trend. Altogether, the sulfur application is the key factor leading to microbial differences in kiwifruit rhizosphere soil. Appropriate sulfur can improve microbial structure characteristics of kiwifruit rhizosphere soil, increase bacterial diversity index, and change bacterial community composition structure.
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Affiliation(s)
- Sen Yang
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, China.,Institute of Crop Protection, Guizhou University, Guiyang, China
| | - Ran Shu
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, China.,Institute of Crop Protection, Guizhou University, Guiyang, China
| | - Xianhui Yin
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, China.,Institute of Crop Protection, Guizhou University, Guiyang, China
| | - Youhua Long
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, China.,Institute of Crop Protection, Guizhou University, Guiyang, China
| | - Jun Yuan
- Engineering and Technology Research Center of Kiwifruit, Guizhou University, Guiyang, China.,Institute of Crop Protection, Guizhou University, Guiyang, China
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34
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Luo H, Xie S, Yang Y. Potential removal capacity and secondary pollution risk evaluation of heavy metals in Gracilaria lemaneiformis from a typical seaweed farming base. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102749] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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35
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Luo H, Xie S, Dai X, Wang Q, Yang Y. Biomass decomposition and heavy metal release from seaweed litter, Gracilaria lemaneiformis, and secondary pollution evaluation. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 310:114729. [PMID: 35192981 DOI: 10.1016/j.jenvman.2022.114729] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 01/21/2022] [Accepted: 02/13/2022] [Indexed: 06/14/2023]
Abstract
The seaweed Gracilaria lemaneiformis can bioremediate heavy metals and improve the environmental quality of mariculture zones. However, the seaweed litter that is produced in the growth and harvest processes becomes one of the important bottlenecks and causes secondary pollution that restricts the development of sustainable seaweed cultivation. Seaweeds exist widely in the coastal areas of the world and are cultivated on a large scale in Asia, but their decomposition process is rarely studied. Experiments that compared decaying dry (dead) and fresh (falling and dying) Gracilaria were conducted to quantify the differences in decomposition rates and heavy metal release in different physiological states. The heavy metals in the seawater and sediment were investigated. The litterbag technique under controlled laboratory conditions was used. The results indicated that the decomposition rates (k) and decay times in 50% (t50%) and 95% (t95%) values varied between dry and fresh Gracilaria. Fresh Gracilaria exhibited a weight loss rate of 15%, and the dry weight loss was 44%. The variations in MAIs (accumulation index of metals) and MR (release rate of metals) between the dry and fresh Gracilaria litters differed significantly, which provides evidence that metals are released back into the environment from Gracilaria litters. The contacted sediments could accelerate the heavy metal release from Gracilaria. Based on our estimates obtained from a 45 d experiment, at least 27.5% of Cd, 16% of Cu, 60.1% of Pb, 72.3% of Zn, 49.4% of Fe, 38.6% of Mn, 68.1% of Cr, and 67.5% of Ni present in the fresh Gracilaria and 37.4% of Cd, 46.2% of Cu, 77.7% of Pb, 53.7% of Zn, 42.7% of Fe, 67.2% of Mn, 75.1% of Cr, and 73.5% of Ni present in the dried Gracilaria were released back into the water when the biomass was left to decay. This study simulates and underscores that Gracilaria has an strong effect on the heavy metal cycles in marine environments and offers a theoretical basis for the development of sustainable seaweed industries in mariculture zones.
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Affiliation(s)
- Hongtian Luo
- Institute of Hydrobiology and Research Center of Low Carbon Economy for Guangzhou Region, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China; China State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, 570228, China
| | - Songguang Xie
- China State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, 570228, China
| | - Xiaojuan Dai
- Institute of Hydrobiology and Research Center of Low Carbon Economy for Guangzhou Region, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China
| | - Qing Wang
- Institute of Hydrobiology and Research Center of Low Carbon Economy for Guangzhou Region, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China.
| | - Yufeng Yang
- Institute of Hydrobiology and Research Center of Low Carbon Economy for Guangzhou Region, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China.
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36
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Likar M, Grašič M, Stres B, Regvar M, Gaberščik A. Original Leaf Colonisers Shape Fungal Decomposer Communities of Phragmites australis in Intermittent Habitats. J Fungi (Basel) 2022; 8:jof8030284. [PMID: 35330286 PMCID: PMC8951327 DOI: 10.3390/jof8030284] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 03/08/2022] [Accepted: 03/09/2022] [Indexed: 01/29/2023] Open
Abstract
Common reed (Phragmites australis) has high biomass production and is primarily subjected to decomposition processes affected by multiple factors. To predict litter decomposition dynamics in intermittent lakes, it is critical to understand how communities of fungi, as the primary decomposers, form under different habitat conditions. This study reports the shotgun metagenomic sequencing of the initial fungal communities on common reed leaves decomposing under different environmental conditions. We demonstrate that a complex network of fungi forms already on the plant persists into the decomposition phase. Phragmites australis leaves contained at least five fungal phyla, with abundant Ascomycota (95.7%) and Basidiomycota (4.1%), identified as saprotrophs (48.6%), pathotrophs (22.5%), and symbiotrophs (12.6%). Most of the correlations between fungi in fresh and decomposing leaves were identified as co-occurrences (positive correlations). The geographic source of litter and leaf age did not affect the structure and diversity of fungal communities. Keystone taxa were mostly moisture-sensitive. Our results suggest that habitat has a strong effect on the formation of the fungal communities through keystone taxa. Nevertheless, it can also alter the proportions of individual fungal groups in the community through indirect effects on competition between the fungal taxa and their exploitation of favourable conditions.
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Affiliation(s)
- Matevž Likar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia; (M.G.); (M.R.); (A.G.)
- Correspondence: ; Tel.: +386-1-320-3-418
| | - Mateja Grašič
- Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia; (M.G.); (M.R.); (A.G.)
| | - Blaž Stres
- Department of Animal Science, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia;
| | - Marjana Regvar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia; (M.G.); (M.R.); (A.G.)
| | - Alenka Gaberščik
- Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia; (M.G.); (M.R.); (A.G.)
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37
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Plant-Microbe Interaction in Sustainable Agriculture: The Factors That May Influence the Efficacy of PGPM Application. SUSTAINABILITY 2022. [DOI: 10.3390/su14042253] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The indiscriminate use of chemical fertilizers and pesticides has caused considerable environmental damage over the years. However, the growing demand for food in the coming years and decades requires the use of increasingly productive and efficient agriculture. Several studies carried out in recent years have shown how the application of plant growth-promoting microbes (PGPMs) can be a valid substitute for chemical industry products and represent a valid eco-friendly alternative. However, because of the complexity of interactions created with the numerous biotic and abiotic factors (i.e., environment, soil, interactions between microorganisms, etc.), the different formulates often show variable effects. In this review, we analyze the main factors that influence the effectiveness of PGPM applications and some of the applications that make them a useful tool for agroecological transition.
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38
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Zha Y, Ning K. Ontology-aware neural network: a general framework for pattern mining from microbiome data. Brief Bioinform 2022; 23:6517031. [PMID: 35091743 PMCID: PMC8921649 DOI: 10.1093/bib/bbac005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 12/30/2021] [Accepted: 01/04/2022] [Indexed: 11/23/2022] Open
Abstract
With the rapid accumulation of microbiome data around the world, numerous computational bioinformatics methods have been developed for pattern mining from such paramount microbiome data. Current microbiome data mining methods, such as gene and species mining, rely heavily on sequence comparison. Most of these methods, however, have a clear trade-off, particularly, when it comes to big-data analytical efficiency and accuracy. Microbiome entities are usually organized in ontology structures, and pattern mining methods that have considered ontology structures could offer advantages in mining efficiency and accuracy. Here, we have summarized the ontology-aware neural network (ONN) as a novel framework for microbiome data mining. We have discussed the applications of ONN in multiple contexts, including gene mining, species mining and microbial community dynamic pattern mining. We have then highlighted one of the most important characteristics of ONN, namely, novel knowledge discovery, which makes ONN a standout among all microbiome data mining methods. Finally, we have provided several applications to showcase the advantage of ONN over other methods in microbiome data mining. In summary, ONN represents a paradigm shift for pattern mining from microbiome data: from traditional machine learning approach to ontology-aware and model-based approach, which has found its broad application scenarios in microbiome data mining.
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Affiliation(s)
- Yuguo Zha
- Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Department of Bioinformatics and Systems Biology, Center of AI Biology, College of Life Science and Technology, Huazhong University of Science and Technology, 1037 Luoyu Road Wuhan, Hubei, Wuhan 430074, China
| | - Kang Ning
- Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Department of Bioinformatics and Systems Biology, Center of AI Biology, College of Life Science and Technology, Huazhong University of Science and Technology, 1037 Luoyu Road Wuhan, Hubei, Wuhan 430074, China
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39
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Ren L, Jensen K, Porada P, Mueller P. Biota-mediated carbon cycling-A synthesis of biotic-interaction controls on blue carbon. Ecol Lett 2022; 25:521-540. [PMID: 35006633 DOI: 10.1111/ele.13940] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 08/03/2021] [Accepted: 11/02/2021] [Indexed: 01/22/2023]
Abstract
Research into biotic interactions has been a core theme of ecology for over a century. However, despite the obvious role that biota play in the global carbon cycle, the effects of biotic interactions on carbon pools and fluxes are poorly understood. Here we develop a conceptual framework that illustrates the importance of biotic interactions in regulating carbon cycling based on a literature review and a quantitative synthesis by means of meta-analysis. Our study focuses on blue carbon ecosystems-vegetated coastal ecosystems that function as the most effective long-term CO2 sinks of the biosphere. We demonstrate that a multitude of mutualistic, competitive and consumer-resource interactions between plants, animals and microbiota exert strong effects on carbon cycling across various spatial scales ranging from the rhizosphere to the landscape scale. Climate change-sensitive abiotic factors modulate the strength of biotic-interaction effects on carbon fluxes, suggesting that the importance of biota-mediated carbon cycling will change under future climatic conditions. Strong effects of biotic interactions on carbon cycling imply that biosphere-climate feedbacks may not be sufficiently represented in current Earth system models. Inclusion of new functional groups in these models, and new approaches to simplify species interactions, may thus improve the predictions of biotic effects on the global climate.
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Affiliation(s)
- Linjing Ren
- Institute of Plant Science and Microbiology, Universität Hamburg, Hamburg, Germany.,State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, P. R. China
| | - Kai Jensen
- Institute of Plant Science and Microbiology, Universität Hamburg, Hamburg, Germany
| | - Philipp Porada
- Institute of Plant Science and Microbiology, Universität Hamburg, Hamburg, Germany
| | - Peter Mueller
- Institute of Plant Science and Microbiology, Universität Hamburg, Hamburg, Germany.,Smithsonian Environmental Research Center, Edgewater, Maryland, USA
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40
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Kida M, Watanabe I, Kinjo K, Kondo M, Yoshitake S, Tomotsune M, Iimura Y, Umnouysin S, Suchewaboripont V, Poungparn S, Ohtsuka T, Fujitake N. Organic carbon stock and composition in 3.5-m core mangrove soils (Trat, Thailand). THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 801:149682. [PMID: 34418624 DOI: 10.1016/j.scitotenv.2021.149682] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 07/26/2021] [Accepted: 08/11/2021] [Indexed: 06/13/2023]
Abstract
Mangroves are increasingly recognized as an important component of regional and global carbon cycles especially for their high carbon storage capacity. Global estimation of mangrove soil organic carbon (SOC) storage requires detailed regional studies, but estimates of SOC data in deep soils are currently missing in many countries. Furthermore, little is explored on the molecular composition of mangrove SOC. Here, we assessed the SOC stock in a Trat mangrove forest (Thailand) by collecting deep soils (3.5 m) and analyzed the SOC composition for better understanding its potential sources and influencing factors. The Trat mangrove forest had four times higher SOC stock than has been considered for Thai mangrove forests, with the per-area SOC stock of nearly 1000 Mg C ha-1 which rivals that of Indo-Pacific mangrove forests. The SOC composition analyzed by C/N ratios and spectroscopic techniques differed by tree species and depth. Compositional data principal component analysis revealed that a biological factor (root abundance) had stronger influences than the soil texture (sand versus clay) on the abundance and composition of mangrove SOC. Although surface soil (~1 m) C density was largely controlled by the recent vegetation, deep soil C density reflected other historical processes. This study contributed to a refined estimate of Thailand mangrove SOC stock and revealed that factors influencing SOC abundance and composition differ by tree species and depth.
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Affiliation(s)
- Morimaru Kida
- Soil Science Laboratory, Graduate School of Agricultural Science, Kobe University, 1 Rokkodai, Nada, Kobe, Hyogo 657-8501, Japan
| | - Ikumi Watanabe
- Soil Science Laboratory, Graduate School of Agricultural Science, Kobe University, 1 Rokkodai, Nada, Kobe, Hyogo 657-8501, Japan
| | - Kazutoshi Kinjo
- Faculty of Agriculture, University of the Ryukyus, 1 Senbaru, Nishihara, Nakagami, Okinawa 903-0213, Japan
| | - Miyuki Kondo
- Center for Environmental Measurement and Analysis, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506, Japan
| | - Shinpei Yoshitake
- River Basin Research Center, Gifu University, 1 Yanagito, Gifu, Gifu 501-1193, Japan
| | - Mitsutoshi Tomotsune
- Soil Science Laboratory, Graduate School of Agricultural Science, Kobe University, 1 Rokkodai, Nada, Kobe, Hyogo 657-8501, Japan
| | - Yasuo Iimura
- School of Environmental Science, The University of Shiga Prefecture, 2500 Hassaka, Hikone, Shiga 522-8533, Japan
| | | | | | | | - Toshiyuki Ohtsuka
- River Basin Research Center, Gifu University, 1 Yanagito, Gifu, Gifu 501-1193, Japan
| | - Nobuhide Fujitake
- Soil Science Laboratory, Graduate School of Agricultural Science, Kobe University, 1 Rokkodai, Nada, Kobe, Hyogo 657-8501, Japan.
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41
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Rubin RL, Ballantine KA, Hegberg A, Andras JP. Flooding and ecological restoration promote wetland microbial communities and soil functions on former cranberry farmland. PLoS One 2021; 16:e0260933. [PMID: 34919560 PMCID: PMC8683025 DOI: 10.1371/journal.pone.0260933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 11/19/2021] [Indexed: 11/25/2022] Open
Abstract
Microbial communities are early responders to wetland degradation, and instrumental players in the reversal of this degradation. However, our understanding of soil microbial community structure and function throughout wetland development remains incomplete. We conducted a survey across cranberry farms, young retired farms, old retired farms, flooded former farms, ecologically restored former farms, and natural reference wetlands with no history of cranberry farming. We investigated the relationship between the microbial community and soil characteristics that restoration intends to maximize, such as soil organic matter, cation exchange capacity and denitrification potential. Among the five treatments considered, flooded and restored sites had the highest prokaryote and microeukaryote community similarity to natural wetlands. In contrast, young retired sites had similar communities to farms, and old retired sites failed to develop wetland microbial communities or functions. Canonical analysis of principal coordinates revealed that soil variables, in particular potassium base saturation, sodium, and denitrification potential, explained 45% of the variation in prokaryote communities and 44% of the variation in microeukaryote communities, segregating soil samples into two clouds in ordination space: farm, old retired and young retired sites on one side and restored, flooded, and natural sites on the other. Heat trees revealed possible prokaryotic (Gemmatimonadetes) and microeukaryotic (Rhizaria) indicators of wetland development, along with a drop in the dominance of Nucletmycea in restored sites, a class that includes suspected mycorrhizal symbionts of the cranberry crop. Flooded sites showed the strongest evidence of wetland development, with triple the soil organic matter accumulation, double the cation exchange capacity, and seventy times the denitrification potential compared to farms. However, given that flooding does not promote any of the watershed or habitat benefits as ecological restoration, we suggest that flooding can be used to stimulate beneficial microbial communities and soil functions during the restoration waiting period, or when restoration is not an option.
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Affiliation(s)
- Rachel L. Rubin
- Department of Environmental Studies, Mount Holyoke College, South Hadley, Massachusetts United States of America
| | - Kate A. Ballantine
- Department of Environmental Studies, Mount Holyoke College, South Hadley, Massachusetts United States of America
| | - Arden Hegberg
- Department of Biology, Mount Holyoke College, South Hadley, Massachusetts, United States of America
| | - Jason P. Andras
- Department of Biology, Mount Holyoke College, South Hadley, Massachusetts, United States of America
- * E-mail:
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42
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Luo H, Wang Q, Zhang C, Zhang L, Yang Y. Bioaccumulation and release of heavy metals during growth and decomposition of cultivated Gracilaria lemaneiformis. MARINE POLLUTION BULLETIN 2021; 173:113130. [PMID: 34814002 DOI: 10.1016/j.marpolbul.2021.113130] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 10/25/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
Seaweeds are important primary producers and bioremediation materials, but its litter produced during growth and harvest is one of the restrictions to the sustainable development of seaweed cultivation. In this study, we conducted field investigation and indoor experiments to analyze the bioaccumulation and release of metals in Gracilaria lemaneiformis during the growth and decaying. The investigation revealed the 3.5 × 105 t (wet weight) G. lemaneiformis from a 1500 ha cultivation area bioaccumulated 1925-2353 kg Zn, 233.5-251 kg Cu, 70.5-80.5 kg Pb and 25.5-47 kg Cd, indicating that G. lemaneiformis is a good metals remover. The growth and decaying period of G. lemaneiformis releases, absorbs or adsorbs metals. It has the function of a "heavy metal pool", simultaneously accumulate and release metals. G. lemaneiformis has a strong influence on heavy metals cycling in the seaweed cultivation ecosystem and provides a very good sample for biogeochemistry study for the globally seaweed sustainable development.
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Affiliation(s)
- Hongtian Luo
- Institute of Hydrobiology, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China
| | - Qing Wang
- Institute of Hydrobiology, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China
| | - Chengwu Zhang
- Institute of Hydrobiology, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China
| | - Li Zhang
- Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China.
| | - Yufeng Yang
- Institute of Hydrobiology, Jinan University, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou 510632, China.
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43
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Byun E, Rezanezhad F, Fairbairn L, Slowinski S, Basiliko N, Price JS, Quinton WL, Roy-Léveillée P, Webster K, Van Cappellen P. Temperature, moisture and freeze-thaw controls on CO 2 production in soil incubations from northern peatlands. Sci Rep 2021; 11:23219. [PMID: 34853354 PMCID: PMC8636591 DOI: 10.1038/s41598-021-02606-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 11/19/2021] [Indexed: 11/20/2022] Open
Abstract
Peat accumulation in high latitude wetlands represents a natural long-term carbon sink, resulting from the cumulative excess of growing season net ecosystem production over non-growing season (NGS) net mineralization in soils. With high latitudes experiencing warming at a faster pace than the global average, especially during the NGS, a major concern is that enhanced mineralization of soil organic carbon will steadily increase CO2 emissions from northern peatlands. In this study, we conducted laboratory incubations with soils from boreal and temperate peatlands across Canada. Peat soils were pretreated for different soil moisture levels, and CO2 production rates were measured at 12 sequential temperatures, covering a range from - 10 to + 35 °C including one freeze-thaw event. On average, the CO2 production rates in the boreal peat samples increased more sharply with temperature than in the temperate peat samples. For same temperature, optimum soil moisture levels for CO2 production were higher in the peat samples from more flooded sites. However, standard reaction kinetics (e.g., Q10 temperature coefficient and Arrhenius equation) failed to account for the apparent lack of temperature dependence of CO2 production rates measured below 0 °C, and a sudden increase after a freezing event. Thus, we caution against using the simple kinetic expressions to represent the CO2 emissions from northern peatlands, especially regarding the long NGS period with multiple soil freeze and thaw events.
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Affiliation(s)
- Eunji Byun
- Ecohydrology Research Group, Department of Earth and Environmental Sciences and Water Institute, University of Waterloo, Waterloo, ON, Canada.
| | - Fereidoun Rezanezhad
- Ecohydrology Research Group, Department of Earth and Environmental Sciences and Water Institute, University of Waterloo, Waterloo, ON, Canada.
| | - Linden Fairbairn
- Ecohydrology Research Group, Department of Earth and Environmental Sciences and Water Institute, University of Waterloo, Waterloo, ON, Canada
- Environment and Climate Change Canada, Toronto, ON, Canada
| | - Stephanie Slowinski
- Ecohydrology Research Group, Department of Earth and Environmental Sciences and Water Institute, University of Waterloo, Waterloo, ON, Canada
| | - Nathan Basiliko
- Department of Biology and Vale Living With Lakes Centre, Laurentian University, Sudbury, ON, Canada
| | - Jonathan S Price
- Department of Geography and Environmental Management, University of Waterloo, Waterloo, ON, Canada
| | - William L Quinton
- Cold Regions Research Centre, Wilfrid Laurier University, Waterloo, ON, Canada
| | - Pascale Roy-Léveillée
- Environment and Climate Change Canada, Toronto, ON, Canada
- Université Laval, Quebec City, QC, Canada
| | - Kara Webster
- Canadian Forest Service Great Lakes Forestry Centre - Natural Resources Canada, Sault Ste Marie, ON, Canada
| | - Philippe Van Cappellen
- Ecohydrology Research Group, Department of Earth and Environmental Sciences and Water Institute, University of Waterloo, Waterloo, ON, Canada.
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44
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Trevathan-Tackett SM, Kepfer-Rojas S, Engelen AH, York PH, Ola A, Li J, Kelleway JJ, Jinks KI, Jackson EL, Adame MF, Pendall E, Lovelock CE, Connolly RM, Watson A, Visby I, Trethowan A, Taylor B, Roberts TNB, Petch J, Farrington L, Djukic I, Macreadie PI. Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 782:146819. [PMID: 33838377 DOI: 10.1016/j.scitotenv.2021.146819] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 03/22/2021] [Accepted: 03/25/2021] [Indexed: 06/12/2023]
Abstract
Wetland ecosystems are critical to the regulation of the global carbon cycle, and there is a high demand for data to improve carbon sequestration and emission models and predictions. Decomposition of plant litter is an important component of ecosystem carbon cycling, yet a lack of knowledge on decay rates in wetlands is an impediment to predicting carbon preservation. Here, we aim to fill this knowledge gap by quantifying the decomposition of standardised green and rooibos tea litter over one year within freshwater and coastal wetland soils across four climates in Australia. We also captured changes in the prokaryotic members of the tea-associated microbiome during this process. Ecosystem type drove differences in tea decay rates and prokaryotic microbiome community composition. Decomposition rates were up to 2-fold higher in mangrove and seagrass soils compared to freshwater wetlands and tidal marshes, in part due to greater leaching-related mass loss. For tidal marshes and freshwater wetlands, the warmer climates had 7-16% less mass remaining compared to temperate climates after a year of decomposition. The prokaryotic microbiome community composition was significantly different between substrate types and sampling times within and across ecosystem types. Microbial indicator analyses suggested putative metabolic pathways common across ecosystems were used to breakdown the tea litter, including increased presence of putative methylotrophs and sulphur oxidisers linked to the introduction of oxygen by root in-growth over the incubation period. Structural equation modelling analyses further highlighted the importance of incubation time on tea decomposition and prokaryotic microbiome community succession, particularly for rooibos tea that experienced a greater proportion of mass loss between three and twelve months compared to green tea. These results provide insights into ecosystem-level attributes that affect both the abiotic and biotic controls of belowground wetland carbon turnover at a continental scale, while also highlighting new decay dynamics for tea litter decomposing under longer incubations.
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Affiliation(s)
- Stacey M Trevathan-Tackett
- Deakin University, Centre for Integrative Ecology, School of Life and Environmental Sciences, 221 Burwood Hwy, Burwood, VIC 3125, Australia.
| | - Sebastian Kepfer-Rojas
- Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg, Denmark
| | - Aschwin H Engelen
- Centre for Marine Sciences (CCMAR), University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Paul H York
- James Cook University, Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Cairns, Queensland 4870, Australia
| | - Anne Ola
- The University of Queensland, School of Biological Sciences, St. Lucia, Queensland 4072, Australia
| | - Jinquan Li
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia; National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Jeffrey J Kelleway
- School of Earth, Atmospheric and Life Sciences, GeoQuEST Research Centre, University of Wollongong, Wollongong, NSW 2522, Australia
| | - Kristin I Jinks
- Coastal and Marine Research Centre, Australian Rivers Institute, School of Environment and Science, Griffith University, Gold Coast, Queensland 4222, Australia
| | - Emma L Jackson
- Coastal Marine Ecosystems Research Centre, CQUniversity, Gladstone, QLD 4680, Australia
| | | | - Elise Pendall
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
| | - Catherine E Lovelock
- The University of Queensland, School of Biological Sciences, St. Lucia, Queensland 4072, Australia
| | - Rod M Connolly
- Coastal and Marine Research Centre, Australian Rivers Institute, School of Environment and Science, Griffith University, Gold Coast, Queensland 4222, Australia
| | - Anne Watson
- School of Natural Sciences, University of Tasmania, Sandy Bay, TAS 7005, Australia
| | - Inger Visby
- Derwent Estuary Program, 24 Davey St Hobart, TAS 7001, Australia
| | - Allison Trethowan
- RiverConnect - Greater Shepparton City Council, Shepparton, VIC 3630, Australia
| | - Ben Taylor
- Nature Glenelg Trust, PO Box 2177, Mt Gambier, SA 5290, Australia
| | | | - Jane Petch
- Melbourne Water, South East Regional Office, Worsley Road, Bangholme, VIC 3175, Australia
| | | | - Ika Djukic
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Peter I Macreadie
- Deakin University, Centre for Integrative Ecology, School of Life and Environmental Sciences, 221 Burwood Hwy, Burwood, VIC 3125, Australia
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The Additions of Nitrogen and Sulfur Synergistically Decrease the Release of Carbon and Nitrogen from Litter in a Subtropical Forest. FORESTS 2020. [DOI: 10.3390/f11121280] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Atmospheric nitrogen (N) and sulfur (S) deposition in subtropical forests has increased rapidly and the current level is very high, thus seriously affecting nutrient (e.g., N and phosphorus (P)) release from litter. However, the specific effects of S addition and its interaction with N on the release of carbon (C), N, and P from litter in subtropical evergreen broadleaved forests are unclear. Therefore, a two-year field experiment was performed using a litterbag method in a subtropical evergreen broadleaved forest in western China to examine the responses of litter decomposition and nutrient release to the control (CK), added N (+N), added S (+S), and added N and S (+NS) treatments. The results showed that the remaining litter mass, lignin, cellulose, C, N, P, and litter N/P ratio were higher, whereas the litter C/N ratio and soil pH were lower in the fertilization treatments than in CK. The annual decomposition coefficients (k-values) in the +N, +S, and +NS treatments were 0.384 ± 0.002, 0.378 ± 0.002, and 0.374 ± 0.001 year−1, respectively, which were significantly lower than the k-values in CK (0.452 ± 0.005 year−1, p < 0.05). The remaining mass, lignin, cellulose, C, and litter N/P ratio were higher, whereas the soil pH was lower in the +NS treatment than in the +N and +S. The interactive effects of N addition and S addition on the remaining litter lignin, cellulose, C, N, and P; the litter C/N, C/P, and N/P ratios; and the soil pH were significant (p < 0.05). In conclusion, the addition of N and S synergistically decreased the degradation of lignin and cellulose and the release of C and N and increased the litter N/P ratio, suggesting that external N and S inputs synergistically slowed the release of C and N from litter and exacerbated litter P limitation during decomposition in this forest.
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Abstract
Despite the recognized organic carbon (OC) sequestration potential of mangrove forests, the ongoing climate change and anthropogenic disturbances pose a great threat to these ecosystems. However, we currently lack the ability to mechanically understand and predict the consequences of such impacts, primarily because mechanisms underlying OC stabilization in these ecosystems remain elusive. Research into OC stabilization has focused on terrestrial soils and marine sediments for decades, overlooking the vegetated coastal ecosystems including mangroves. In terrestrial soils and marine sediments, it is widely accepted that OC stabilization is the integrated consequence of OM’s inherent recalcitrance, physical protection, and interactions with minerals and metals. However, related discussion is rarely done in mangrove soils, and recalcitrance of roots and high net ecosystem production (high primary production and low heterotrophic respiration) have been considered as a primary OC sequestration mechanism in mangrove peat and mineral soils, respectively. This review presents the available information on the mechanisms underlying OC stabilization in mangrove soils and highlights research questions that warrant further investigation. Primary OC stabilization mechanisms differ between mangrove peat and mineral soils. In mangrove mineral soils, physico-chemical stabilization processes are important, yet grossly understudied OC stabilization mechanisms. In mangrove peat, recalcitrance of mangrove roots and the inhibition of phenoloxidase under the anoxic condition may be the primary OC stabilization mechanisms. Salinity-induced OC immobilization likely plays a role in both type of soils. Finally, this review argues that belowground production and allochthonous inputs in mangrove forests are likely underestimated. More studies are needed to constrain C budgets to explain the enigma that mangrove OC keeps accumulating despite much higher decomposition (especially by large lateral exports) than previously considered.
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Liu Y, Luo M, Ye R, Huang J, Xiao L, Hu Q, Zhu A, Tong C. Impacts of the rhizosphere effect and plant species on organic carbon mineralization rates and pathways, and bacterial community composition in a tidal marsh. FEMS Microbiol Ecol 2020; 95:5538758. [PMID: 31344237 DOI: 10.1093/femsec/fiz120] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 07/18/2019] [Indexed: 11/13/2022] Open
Abstract
Despite the growing recognition regarding the carbon cycle in the rhizosphere of upland ecosystems, little is known regarding the rhizosphere effect on soil organic carbon (SOC) mineralization in tidal marsh soils. In the current study, in situ rhizobox experiments (including rhizosphere and inner and outer bulk soil) were conducted in an estuarine tidal marsh. Our results showed that a higher abundance of total bacteria, Geobacter, dsrA and mcrA and lower α-diversity were observed in the rhizosphere relative to the bulk soil. Rhizosphere effects shifted the partition of terminal metabolic pathways from sulfate reduction in the bulk soil to the co-dominance of microbial Fe(III) and sulfate reduction in the rhizosphere. Although the rhizosphere effect promoted the rates of three terminal metabolic pathways, it showed greater preference towards microbial Fe(III) reduction in the tidal marsh soils. Plant species had little impact on the partitioning of terminal metabolic pathways, but did affect the potential of total SOC mineralization together with the abundance and diversity of total bacteria. Both the rhizosphere effect and plant species influenced the bacterial community composition in the tidal marsh soils; however, plant species had a less pronounced impact on the bacterial community compared with that of the rhizosphere effect.
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Affiliation(s)
- Yuxiu Liu
- Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China
| | - Min Luo
- Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China.,School of Environment and Resource, Fuzhou University, Fuzhou 350116, China
| | - Rongzhong Ye
- Pee Dee Research & Education Centers, Clemson University, Florence, SC 29506, USA
| | - Jiafang Huang
- Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China
| | - Leilei Xiao
- Key Laboratory of Coastal Biology and Biological Resources Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Qikai Hu
- Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China.,School of Environment and Resource, Fuzhou University, Fuzhou 350116, China
| | - Aijv Zhu
- Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China
| | - Chuan Tong
- Key Laboratory of Humid Subtropical Eco-Geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350007, China
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Soil Chemical and Microbiological Properties Are Changed by Long-Term Chemical Fertilizers That Limit Ecosystem Functioning. Microorganisms 2020; 8:microorganisms8050694. [PMID: 32397341 PMCID: PMC7285516 DOI: 10.3390/microorganisms8050694] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 04/30/2020] [Accepted: 05/07/2020] [Indexed: 01/11/2023] Open
Abstract
Although the effects of fertilization and microbiota on plant growth have been widely studied, our understanding of the chemical fertilizers to alter soil chemical and microbiological properties in woody plants is still limited. The aim of the present study is to investigate the impact of long-term application of chemical fertilizers on chemical and microbiological properties of root-associated soils of walnut trees. The results show that soil organic matter (OM), pHkcl, total nitrogen (TN), nitrate-nitrogen (NO3−), and total phosphorus (TP) contents were significantly higher in non-fertilized soil than after chemical fertilization. The long-term fertilization led to excessive ammonium-nitrogen (NH4+) and available phosphorus (AP) residues in the cultivated soil, among which NH4+ resulted in soil acidification and changes in bacterial community structure, while AP reduced fungal diversity. The naturally grown walnut trees led to an enrichment in beneficial bacteria such as Burkholderia, Nitrospira, Pseudomonas, and Candidatus_Solibacter, as well as fungi, including Trichoderma, Lophiostoma, Phomopsis, Ilyonectria, Purpureocillium, Cylindrocladiella, Hyalorbilia, Chaetomium, and Trichoglossum. The presence of these bacterial and fungal genera that have been associated with nutrient mobilization and plant growth was likely related to the higher soil OM, TN, NO3−, and TP contents in the non-fertilized plots. These findings highlight that reduced chemical fertilizers and organic cultivation with beneficial microbiota could be used to improve economic efficiency and benefit the environment in sustainable agriculture.
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Morant D, Picazo A, Rochera C, Santamans AC, Miralles-Lorenzo J, Camacho-Santamans A, Ibañez C, Martínez-Eixarch M, Camacho A. Carbon metabolic rates and GHG emissions in different wetland types of the Ebro Delta. PLoS One 2020; 15:e0231713. [PMID: 32320412 PMCID: PMC7176097 DOI: 10.1371/journal.pone.0231713] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Accepted: 03/30/2020] [Indexed: 11/22/2022] Open
Abstract
Deltaic wetlands are highly productive ecosystems, which characteristically can act as C-sinks. However, they are among the most threatened ecosystems, being very vulnerable to global change, and require special attention towards its conservation. Knowing their climate change mitigating potential, conservation measures should also be oriented with a climatic approach, to strengthen their regulatory services. In this work we studied the carbon biogeochemistry and the specific relevance of certain microbial guilds on carbon metabolisms of the three main types of deltaic wetlands located in the Ebro Delta, north-eastern Spain, as well as how they deal with human pressures and climate change effects. We estimated the metabolic rates of the main carbon-related metabolisms (primary production and respiration) and the resulting carbon and global warming potential balances in sites with a different salinity range and trophic status. With the results obtained, we tried to define the influence of possible changes in salinity and trophic level linked to the main impacts currently threatening deltaic wetlands, on the C-metabolisms and GHG emissions, for a better understanding of the mitigating capacity and their possible enhancement when applying specific management actions. Metabolic rates showed a pattern highly influenced by the salinity range and nutrients inputs. Freshwater and brackish wetlands, with higher nutrient inputs from agricultural runoff, showed higher C-capture capacity (around 220–250 g C m-2 y-1), but also higher rates of degradative metabolisms (aerobic respiration and CH4 emissions). Contrastingly, the rates of C-related metabolisms and C-retention of Salicornia-type coastal salt marshes were lower (42 g C m-2 y-1). The study of the microbial metacommunity composition by the16S RNA gene sequencing revealed a significant higher presence of methanogens in the salt marsh, and also higher metabolic potential, where there was significantly more organic matter content in sediment. Salinity inhibition, however, explained the lower respiration rates, both aerobic and anaerobic, and prevented higher rates of methanogenesis despite the major presence of methanogens. Conservation measures for these wetlands would require, overall, maintaining the sediment contributions of the river basin intending to overcome the regression of the Delta and its salt marshes in a climate change scenario. Particularly, for reducing degradative metabolisms, and favour C-retention, nutrient inputs should be controlled in freshwater and brackish wetlands in order to reduce eutrophication. In salt marshes, the reduction of salinity should be avoided to control increases in methanogenesis and CH4 emissions.
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Affiliation(s)
- Daniel Morant
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
| | - Antonio Picazo
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
| | - Carlos Rochera
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
| | - Anna C. Santamans
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
| | - Javier Miralles-Lorenzo
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
| | - Alba Camacho-Santamans
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
| | - Carles Ibañez
- IRTA - Institute of Agrifood Research and Technology, Sant Carles de la Ràpita, Spain
| | | | - Antonio Camacho
- Cavanilles Institute for Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain
- * E-mail:
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Long-Term Rewetting of Three Formerly Drained Peatlands Drives Congruent Compositional Changes in Pro- and Eukaryotic Soil Microbiomes through Environmental Filtering. Microorganisms 2020; 8:microorganisms8040550. [PMID: 32290343 PMCID: PMC7232337 DOI: 10.3390/microorganisms8040550] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Revised: 04/02/2020] [Accepted: 04/08/2020] [Indexed: 12/16/2022] Open
Abstract
Drained peatlands are significant sources of the greenhouse gas (GHG) carbon dioxide. Rewetting is a proven strategy used to protect carbon stocks; however, it can lead to increased emissions of the potent GHG methane. The response to rewetting of soil microbiomes as drivers of these processes is poorly understood, as are the biotic and abiotic factors that control community composition. We analyzed the pro- and eukaryotic microbiomes of three contrasting pairs of minerotrophic fens subject to decade-long drainage and subsequent long-term rewetting. Abiotic soil properties including moisture, dissolved organic matter, methane fluxes, and ecosystem respiration rates were also determined. The composition of the microbiomes was fen-type-specific, but all rewetted sites showed higher abundances of anaerobic taxa compared to drained sites. Based on multi-variate statistics and network analyses, we identified soil moisture as a major driver of community composition. Furthermore, salinity drove the separation between coastal and freshwater fen communities. Methanogens were more than 10-fold more abundant in rewetted than in drained sites, while their abundance was lowest in the coastal fen, likely due to competition with sulfate reducers. The microbiome compositions were reflected in methane fluxes from the sites. Our results shed light on the factors that structure fen microbiomes via environmental filtering.
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