1
|
Kim J, Scaboo A, Rainey KM, Fritschi FB, Bilyeu K. Redesigning soybean with improved oil and meal traits. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024; 137:218. [PMID: 39254853 DOI: 10.1007/s00122-024-04732-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Accepted: 08/24/2024] [Indexed: 09/11/2024]
Abstract
KEY MESSAGE Soybean seed oil and meal composition traits can be combined without interference to provide additional value to the crop. Soybean [Glycine max (L.) Merr.] is an important crop worldwide; its overall value comes from seed oil and high protein meal. The development of soybean varieties with allele combinations for improved oil and meal quality is expected to provide a compositional value bundle for soybean. The high oleic and low linolenic acid seed oil trait (HOLL; > 70% oleic and < 3% linolenic acid) is targeted to optimize the health and functional properties of soybean oil. For soybean meal, metabolizable energy is improved by altering the carbohydrate profile with increased sucrose and decreased anti-nutritional factors, raffinose family of oligosaccharides (RFOs). Previous research identified four variant alleles of fatty acid desaturase (FAD) genes and two raffinose synthase (RS) genes necessary for the HOLL trait in soybean oil and Low or Ultra-Low (UL) RFO traits in soybean meal, respectively. We employed a molecular marker-assisted breeding approach to combine six alleles conferring the desired soybean oil and meal value traits. Eight environment field trials were conducted with twenty-four soybean lines to evaluate phenotypic interactions among the variant alleles of FAD and RS genes. The results indicated that the four FAD gene alleles conditioned the HOLL fatty acid profile of the seed oil regardless of the allele status of the RS genes. Independent of the allele combination of the FAD genes, soybean with two variant alleles of the RS genes had the desired RFO trait in the seeds. The results confirm the feasibility of soybean variety development with this unique combination of oil and meal traits.
Collapse
Affiliation(s)
- Jeonghwa Kim
- Division of Plant Science and Technology, University of Missouri, Columbia, MO, USA
- Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA
| | - Andrew Scaboo
- Division of Plant Science and Technology, University of Missouri, Columbia, MO, USA
| | | | - Felix B Fritschi
- Division of Plant Science and Technology, University of Missouri, Columbia, MO, USA
| | - Kristin Bilyeu
- Plant Genetics Research Unit, USDA/ARS, Columbia, MO, USA.
| |
Collapse
|
2
|
Maeda MH, Toda K, Kaga A. Novel Soybean Variety Lacking Raffinose Synthase 2 Activity. ACS OMEGA 2024; 9:2134-2144. [PMID: 38250426 PMCID: PMC10795051 DOI: 10.1021/acsomega.3c04585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 11/27/2023] [Accepted: 11/29/2023] [Indexed: 01/23/2024]
Abstract
Variation in the raffinose family oligosaccharide (RFO) content in soybean is advantageous for livestock farming and health science. In this study, a soybean variety (GmJMC172) with a significantly low stachyose content in its seeds was identified in the NARO Genebank core collection. The results of the single-nucleotide polymorphism (SNP) analysis suggested that this phenomenon was related to a single-base deletion, inducing a frameshift mutation in raffinose synthase 2 (RS2), rather than the polymorphisms in the RS3, RS4, and stachyose synthase (STS) sequences. Differences in the enzymatic properties between the native RS2 and truncated RS2 were examined by using a three-dimensional model predicted using Alphafold2. In addition to revealing the missing active pocket in truncated RS2, the modeled structure explained the catalytic role of W331* and suggested a sufficient space to bind both sucrose and raffinose in the ligand-binding pocket. The soybean line, with seeds available from the NARO Genebank, could serve as breeding materials for manipulating the RFO content.
Collapse
Affiliation(s)
- Miki H. Maeda
- Research
Center of Genetic Resources, National Agriculture
and Food Research Organization (NARO), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Kyoko Toda
- Research
Center of Genetic Resources, National Agriculture
and Food Research Organization (NARO), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Akito Kaga
- Institute
of Crop Science, National Agriculture and
Food Research Organization (NARO), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8518, Japan
| |
Collapse
|
3
|
Singer WM, Lee YC, Shea Z, Vieira CC, Lee D, Li X, Cunicelli M, Kadam SS, Khan MAW, Shannon G, Mian MAR, Nguyen HT, Zhang B. Soybean genetics, genomics, and breeding for improving nutritional value and reducing antinutritional traits in food and feed. THE PLANT GENOME 2023; 16:e20415. [PMID: 38084377 DOI: 10.1002/tpg2.20415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 10/25/2023] [Accepted: 10/27/2023] [Indexed: 12/22/2023]
Abstract
Soybean [Glycine max (L.) Merr.] is a globally important crop due to its valuable seed composition, versatile feed, food, and industrial end-uses, and consistent genetic gain. Successful genetic gain in soybean has led to widespread adaptation and increased value for producers, processors, and consumers. Specific focus on the nutritional quality of soybean seed composition for food and feed has further elucidated genetic knowledge and bolstered breeding progress. Seed components are historical and current targets for soybean breeders seeking to improve nutritional quality of soybean. This article reviews genetic and genomic foundations for improvement of nutritionally important traits, such as protein and amino acids, oil and fatty acids, carbohydrates, and specific food-grade considerations; discusses the application of advanced breeding technology such as CRISPR/Cas9 in creating seed composition variations; and provides future directions and breeding recommendations regarding soybean seed composition traits.
Collapse
Affiliation(s)
- William M Singer
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
| | - Yi-Chen Lee
- Department of Agriculture, Fort Hays State University, Hays, Kansas, USA
| | - Zachary Shea
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
| | - Caio Canella Vieira
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, USA
| | - Dongho Lee
- Fisher Delta Research, Extension, and Education Center, University of Missouri, Portageville, Missouri, USA
| | - Xiaoying Li
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
| | - Mia Cunicelli
- Soybean and Nitrogen Fixation Research Unit, USDA-ARS, Raleigh, North Carolina, USA
| | - Shaila S Kadam
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
| | | | - Grover Shannon
- Fisher Delta Research, Extension, and Education Center, University of Missouri, Portageville, Missouri, USA
| | - M A Rouf Mian
- Soybean and Nitrogen Fixation Research Unit, USDA-ARS, Raleigh, North Carolina, USA
| | - Henry T Nguyen
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
| | - Bo Zhang
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
| |
Collapse
|
4
|
Knizia D, Bellaloui N, Yuan J, Lakhssasi N, Anil E, Vuong T, Embaby M, Nguyen HT, Mengistu A, Meksem K, Kassem MA. Quantitative Trait Loci and Candidate Genes That Control Seed Sugars Contents in the Soybean 'Forrest' by 'Williams 82' Recombinant Inbred Line Population. PLANTS (BASEL, SWITZERLAND) 2023; 12:3498. [PMID: 37836238 PMCID: PMC10575016 DOI: 10.3390/plants12193498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 10/03/2023] [Accepted: 10/06/2023] [Indexed: 10/15/2023]
Abstract
Soybean seed sugars are among the most abundant beneficial compounds for human and animal consumption in soybean seeds. Higher seed sugars such as sucrose are desirable as they contribute to taste and flavor in soy-based food. Therefore, the objectives of this study were to use the 'Forrest' by 'Williams 82' (F × W82) recombinant inbred line (RIL) soybean population (n = 309) to identify quantitative trait loci (QTLs) and candidate genes that control seed sugar (sucrose, stachyose, and raffinose) contents in two environments (North Carolina and Illinois) over two years (2018 and 2020). A total of 26 QTLs that control seed sugar contents were identified and mapped on 16 soybean chromosomes (chrs.). Interestingly, five QTL regions were identified in both locations, Illinois and North Carolina, in this study on chrs. 2, 5, 13, 17, and 20. Amongst 57 candidate genes identified in this study, 16 were located within 10 Megabase (MB) of the identified QTLs. Amongst them, a cluster of four genes involved in the sugars' pathway was collocated within 6 MB of two QTLs that were detected in this study on chr. 17. Further functional validation of the identified genes could be beneficial in breeding programs to produce soybean lines with high beneficial sucrose and low raffinose family oligosaccharides.
Collapse
Affiliation(s)
- Dounya Knizia
- School of Agricultural Sciences, Southern Illinois University, Carbondale, IL 62901, USA; (D.K.); (N.L.); (E.A.); (M.E.); (K.M.)
| | - Nacer Bellaloui
- USDA, Agriculture Research Service, Crop Genetics Research Unit, 141 Experiment Station Road, Stoneville, MS 38776, USA;
| | - Jiazheng Yuan
- Plant Genomics and Biotechnology Lab, Department of Biological and Forensic Sciences, Fayetteville State University, Fayetteville, NC 28301, USA;
| | - Naoufal Lakhssasi
- School of Agricultural Sciences, Southern Illinois University, Carbondale, IL 62901, USA; (D.K.); (N.L.); (E.A.); (M.E.); (K.M.)
| | - Erdem Anil
- School of Agricultural Sciences, Southern Illinois University, Carbondale, IL 62901, USA; (D.K.); (N.L.); (E.A.); (M.E.); (K.M.)
| | - Tri Vuong
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA; (T.V.); (H.T.N.)
| | - Mohamed Embaby
- School of Agricultural Sciences, Southern Illinois University, Carbondale, IL 62901, USA; (D.K.); (N.L.); (E.A.); (M.E.); (K.M.)
| | - Henry T. Nguyen
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA; (T.V.); (H.T.N.)
| | - Alemu Mengistu
- USDA, Agriculture Research Service, Crop Genetics Research Unit, 605 Airways Blvd, Jackson, TN 38301, USA;
| | - Khalid Meksem
- School of Agricultural Sciences, Southern Illinois University, Carbondale, IL 62901, USA; (D.K.); (N.L.); (E.A.); (M.E.); (K.M.)
| | - My Abdelmajid Kassem
- Plant Genomics and Biotechnology Lab, Department of Biological and Forensic Sciences, Fayetteville State University, Fayetteville, NC 28301, USA;
| |
Collapse
|
5
|
Androsiuk P, Milarska SE, Dulska J, Kellmann-Sopyła W, Szablińska-Piernik J, Lahuta LB. The comparison of polymorphism among Avena species revealed by retrotransposon-based DNA markers and soluble carbohydrates in seeds. J Appl Genet 2023; 64:247-264. [PMID: 36719514 PMCID: PMC10076396 DOI: 10.1007/s13353-023-00748-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 01/13/2023] [Accepted: 01/18/2023] [Indexed: 02/01/2023]
Abstract
Here, we compared the polymorphism among 13 Avena species revealed by the iPBS markers and soluble carbohydrate profiles in seeds. The application of seven iPBS markers generated 83 bands, out of which 20.5% were polymorphic. No species-specific bands were scored. Shannon's information index (I) and expected heterozygosity (He) revealed low genetic diversity, with the highest values observed for A. nuda (I = 0.099; He = 0.068). UPGMA clustering of studied Avena accessions and PCoA results showed that the polyploidy level is the main grouping criterion. High-resolution gas chromatography revealed that the studied Avena accessions share the same composition of soluble carbohydrates, but significant differences in the content of total (5.30-22.38 mg g-1 of dry weight) and particular sugars among studied samples were observed. Sucrose appeared as the most abundant sugar (mean 61.52% of total soluble carbohydrates), followed by raffinose family oligosaccharides (31.23%), myo-inositol and its galactosides (6.16%), and monosaccharides (1.09%). The pattern of interspecific variation in soluble carbohydrates, showed by PCA, was convergent to that revealed by iPBS markers. Thus, both methods appeared as a source of valuable data useful in the characterization of Avena resources or in the discussion on the evolution of this genus.
Collapse
Affiliation(s)
- Piotr Androsiuk
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 1A, 10-719, Olsztyn, Poland.
| | - Sylwia Eryka Milarska
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 1A, 10-719, Olsztyn, Poland
| | - Justyna Dulska
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 1A, 10-719, Olsztyn, Poland
| | - Wioleta Kellmann-Sopyła
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 1A, 10-719, Olsztyn, Poland
| | - Joanna Szablińska-Piernik
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 1A, 10-719, Olsztyn, Poland
| | - Lesław Bernard Lahuta
- Department of Plant Physiology, Genetics and Biotechnology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, ul. Oczapowskiego 1A, 10-719, Olsztyn, Poland
| |
Collapse
|
6
|
Sanyal R, Kumar S, Pattanayak A, Kar A, Bishi SK. Optimizing raffinose family oligosaccharides content in plants: A tightrope walk. FRONTIERS IN PLANT SCIENCE 2023; 14:1134754. [PMID: 37056499 PMCID: PMC10088399 DOI: 10.3389/fpls.2023.1134754] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 03/08/2023] [Indexed: 06/19/2023]
Abstract
Plants synthesize various compounds for their growth, metabolism, and stress mitigation, and one such group of compounds is the raffinose family of oligosaccharides (RFOs). RFOs are non-reducing oligosaccharides having galactose residues attached to a sucrose moiety. They act as carbohydrate reserves in plants, assisting in seed germination, desiccation tolerance, and biotic/abiotic stress tolerance. Although legumes are among the richest sources of dietary proteins, the direct consumption of legumes is hindered by an excess of RFOs in the edible parts of the plant, which causes flatulence in humans and monogastric animals. These opposing characteristics make RFOs manipulation a complicated tradeoff. An in-depth knowledge of the chemical composition, distribution pattern, tissue mobilization, and metabolism is required to optimize the levels of RFOs. The most recent developments in our understanding of RFOs distribution, physiological function, genetic regulation of their biosynthesis, transport, and degradation in food crops have been covered in this review. Additionally, we have suggested a few strategies that can sustainably reduce RFOs in order to solve the flatulence issue in animals. The comprehensive information in this review can be a tool for researchers to precisely control the level of RFOs in crops and create low antinutrient, nutritious food with wider consumer acceptability.
Collapse
Affiliation(s)
- Rajarshi Sanyal
- School of Genomics and Molecular Breeding, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, Pusa, New Delhi, India
| | - Sandeep Kumar
- Automation & Plant Engineering Division, ICAR-National Institute of Secondary Agriculture, Ranchi, Jharkhand, India
| | - Arunava Pattanayak
- School of Genomics and Molecular Breeding, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
| | - Abhijit Kar
- Automation & Plant Engineering Division, ICAR-National Institute of Secondary Agriculture, Ranchi, Jharkhand, India
| | - Sujit K. Bishi
- School of Genomics and Molecular Breeding, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
| |
Collapse
|
7
|
Colombo F, Pagano A, Sangiorgio S, Macovei A, Balestrazzi A, Araniti F, Pilu R. Study of Seed Ageing in lpa1-1 Maize Mutant and Two Possible Approaches to Restore Seed Germination. Int J Mol Sci 2023; 24:ijms24010732. [PMID: 36614175 PMCID: PMC9820859 DOI: 10.3390/ijms24010732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 12/16/2022] [Accepted: 12/16/2022] [Indexed: 01/03/2023] Open
Abstract
Phytic acid (PA) is a strong anti-nutritional factor with a key antioxidant role in countering reactive oxygen species. Despite the potential benefits of low phytic acid (lpa) mutants, the reduction of PA causes pleiotropic effects, e.g., reduced seed germination and viability loss related to seed ageing. The current study evaluated a historical series of naturally aged seeds and showed that lpa1-1 seeds aged faster as compared to wildtype. To mimic natural ageing, the present study set up accelerated ageing treatments at different temperatures. It was found that incubating the seeds at 57 °C for 24 h, the wildtype germinated at 82.4% and lpa1-1 at 40%. The current study also hypothesized two possible solutions to overcome these problems: (1) Classical breeding was used to constitute synthetic populations carrying the lpa1-1 mutation, with genes pushing anthocyanin accumulation in the embryo (R-navajo allele). The outcome showed that the presence of R-navajo in the lpa1-1 genotype was not able to improve the germinability (-20%), but this approach could be useful to improve the germinability in non-mutant genotypes (+17%). (2) In addition, hydropriming was tested on lpa1-1 and wildtype seeds, and germination was improved by 20% in lpa1-1, suggesting a positive role of seed priming in restoring germination. Moreover, the data highlighted metabolic differences in the metabolome before and after hydropriming treatment, suggesting that the differences in germination could also be mediated by differences in the metabolic composition induced by the mutation.
Collapse
Affiliation(s)
- Federico Colombo
- Department of Agricultural and Environmental Sciences—Production, Landscape, Agroenergy, Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy
| | - Andrea Pagano
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Via Ferrata 9, 27100 Pavia, Italy
| | - Stefano Sangiorgio
- Department of Agricultural and Environmental Sciences—Production, Landscape, Agroenergy, Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy
| | - Anca Macovei
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Via Ferrata 9, 27100 Pavia, Italy
| | - Alma Balestrazzi
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Via Ferrata 9, 27100 Pavia, Italy
| | - Fabrizio Araniti
- Department of Agricultural and Environmental Sciences—Production, Landscape, Agroenergy, Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy
| | - Roberto Pilu
- Department of Agricultural and Environmental Sciences—Production, Landscape, Agroenergy, Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy
- Correspondence:
| |
Collapse
|
8
|
Guo B, Sun L, Jiang S, Ren H, Sun R, Wei Z, Hong H, Luan X, Wang J, Wang X, Xu D, Li W, Guo C, Qiu LJ. Soybean genetic resources contributing to sustainable protein production. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2022; 135:4095-4121. [PMID: 36239765 PMCID: PMC9561314 DOI: 10.1007/s00122-022-04222-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 09/10/2022] [Indexed: 06/12/2023]
Abstract
KEY MESSAGE Genetic resources contributes to the sustainable protein production in soybean. Soybean is an important crop for food, oil, and forage and is the main source of edible vegetable oil and vegetable protein. It plays an important role in maintaining balanced dietary nutrients for human health. The soybean protein content is a quantitative trait mainly controlled by gene additive effects and is usually negatively correlated with agronomic traits such as the oil content and yield. The selection of soybean varieties with high protein content and high yield to secure sustainable protein production is one of the difficulties in soybean breeding. The abundant genetic variation of soybean germplasm resources is the basis for overcoming the obstacles in breeding for soybean varieties with high yield and high protein content. Soybean has been cultivated for more than 5000 years and has spread from China to other parts of the world. The rich genetic resources play an important role in promoting the sustainable production of soybean protein worldwide. In this paper, the origin and spread of soybean and the current status of soybean production are reviewed; the genetic characteristics of soybean protein and the distribution of resources are expounded based on phenotypes; the discovery of soybean seed protein-related genes as well as transcriptomic, metabolomic, and proteomic studies in soybean are elaborated; the creation and utilization of high-protein germplasm resources are introduced; and the prospect of high-protein soybean breeding is described.
Collapse
Affiliation(s)
- Bingfu Guo
- Nanchang Branch of National Center of Oil crops Improvement, Jiangxi Province Key Laboratory of Oil crops Biology, Crops Research Institute of Jiangxi Academy of Agricultural Sciences, Nanchang, China
- The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) and MOA KeyLab of Soybean Biology (Beijing), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Liping Sun
- Nanchang Branch of National Center of Oil crops Improvement, Jiangxi Province Key Laboratory of Oil crops Biology, Crops Research Institute of Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Siqi Jiang
- Key Laboratory of Molecular Cytogenetics and Genetic Breeding, College of Life Science and Technology, Harbin Normal University, Harbin, China
- The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) and MOA KeyLab of Soybean Biology (Beijing), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Honglei Ren
- Soybean Research Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Rujian Sun
- The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) and MOA KeyLab of Soybean Biology (Beijing), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Zhongyan Wei
- The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) and MOA KeyLab of Soybean Biology (Beijing), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Huilong Hong
- The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) and MOA KeyLab of Soybean Biology (Beijing), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
- Soybean Research Institute, Key Laboratory of Soybean Biology of Chinese Education Ministry, Northeast Agriculture University, Harbin, China
| | - Xiaoyan Luan
- Soybean Research Institute, Heilongjiang Academy of Agricultural Sciences, Harbin, China
| | - Jun Wang
- College of Agriculture, Yangtze University, Jingzhou, China
| | - Xiaobo Wang
- School of Agronomy, Anhui Agricultural University, Hefei, China
| | - Donghe Xu
- Biological Resources and Post-Harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Japan
| | - Wenbin Li
- Soybean Research Institute, Key Laboratory of Soybean Biology of Chinese Education Ministry, Northeast Agriculture University, Harbin, China
| | - Changhong Guo
- Key Laboratory of Molecular Cytogenetics and Genetic Breeding, College of Life Science and Technology, Harbin Normal University, Harbin, China
| | - Li-Juan Qiu
- The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) and MOA KeyLab of Soybean Biology (Beijing), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China.
| |
Collapse
|
9
|
Wang W, Xie Y, Liu L, King GJ, White P, Ding G, Wang S, Cai H, Wang C, Xu F, Shi L. Genetic Control of Seed Phytate Accumulation and the Development of Low-Phytate Crops: A Review and Perspective. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:3375-3390. [PMID: 35275483 DOI: 10.1021/acs.jafc.1c06831] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Breeding low phytic acid (lpa) crops is a strategy that has potential to both improve the nutritional quality of food and feed and contribute to the sustainability of agriculture. Here, we review the lipid-independent and -dependent pathways of phytate synthesis and their regulatory mechanisms in plants. We compare the genetic variation of the phytate concentration and distribution in seeds between dicot and monocot species as well as the associated temporal and spatial expression patterns of the genes involved in phytate synthesis and transport. Quantitative trait loci or significant single nucleotide polymorphisms for the seed phytate concentration have been identified in different plant species by linkage and association mapping, and some genes have been cloned from lpa mutants. We summarize the effects of various lpa mutations on important agronomic traits in crop plants and propose SULTR3;3 and SULTR3;4 as optimal target genes for lpa crop breeding.
Collapse
Affiliation(s)
- Wei Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Yiwen Xie
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Lei Liu
- Southern Cross Plant Science, Southern Cross University, Lismore New South Wales 2480, Australia
| | - Graham J King
- Southern Cross Plant Science, Southern Cross University, Lismore New South Wales 2480, Australia
| | - Philip White
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- The James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom
| | - Guangda Ding
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Sheliang Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Hongmei Cai
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Chuang Wang
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
- Microelement Research Center, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, Hubei 430070, People's Republic of China
| |
Collapse
|
10
|
Elango D, Rajendran K, Van der Laan L, Sebastiar S, Raigne J, Thaiparambil NA, El Haddad N, Raja B, Wang W, Ferela A, Chiteri KO, Thudi M, Varshney RK, Chopra S, Singh A, Singh AK. Raffinose Family Oligosaccharides: Friend or Foe for Human and Plant Health? FRONTIERS IN PLANT SCIENCE 2022; 13:829118. [PMID: 35251100 PMCID: PMC8891438 DOI: 10.3389/fpls.2022.829118] [Citation(s) in RCA: 53] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Accepted: 01/26/2022] [Indexed: 05/27/2023]
Abstract
Raffinose family oligosaccharides (RFOs) are widespread across the plant kingdom, and their concentrations are related to the environment, genotype, and harvest time. RFOs are known to carry out many functions in plants and humans. In this paper, we provide a comprehensive review of RFOs, including their beneficial and anti-nutritional properties. RFOs are considered anti-nutritional factors since they cause flatulence in humans and animals. Flatulence is the single most important factor that deters consumption and utilization of legumes in human and animal diets. In plants, RFOs have been reported to impart tolerance to heat, drought, cold, salinity, and disease resistance besides regulating seed germination, vigor, and longevity. In humans, RFOs have beneficial effects in the large intestine and have shown prebiotic potential by promoting the growth of beneficial bacteria reducing pathogens and putrefactive bacteria present in the colon. In addition to their prebiotic potential, RFOs have many other biological functions in humans and animals, such as anti-allergic, anti-obesity, anti-diabetic, prevention of non-alcoholic fatty liver disease, and cryoprotection. The wide-ranging applications of RFOs make them useful in food, feed, cosmetics, health, pharmaceuticals, and plant stress tolerance; therefore, we review the composition and diversity of RFOs, describe the metabolism and genetics of RFOs, evaluate their role in plant and human health, with a primary focus in grain legumes.
Collapse
Affiliation(s)
- Dinakaran Elango
- Department of Agronomy, Iowa State University, Ames, IA, United States
| | - Karthika Rajendran
- VIT School of Agricultural Innovations and Advanced Learning, Vellore Institute of Technology, Vellore, India
| | - Liza Van der Laan
- Department of Agronomy, Iowa State University, Ames, IA, United States
| | - Sheelamary Sebastiar
- Division of Crop Improvement, ICAR-Sugarcane Breeding Institute, Coimbatore, India
| | - Joscif Raigne
- Department of Agronomy, Iowa State University, Ames, IA, United States
| | | | - Noureddine El Haddad
- International Center for Agricultural Research in the Dry Areas, Rabat, Morocco
- Faculty of Sciences, Mohammed V University of Rabat, Rabat, Morocco
| | - Bharath Raja
- School of Biosciences and Technology, Vellore Institute of Technology, Vellore, India
| | - Wanyan Wang
- Ecosystem Science and Management, Penn State University, University Park, PA, United States
| | - Antonella Ferela
- Department of Agronomy, Iowa State University, Ames, IA, United States
| | - Kevin O. Chiteri
- Department of Agronomy, Iowa State University, Ames, IA, United States
| | - Mahendar Thudi
- Department of Agricultural Biotechnology and Molecular Biology, Dr. Rajendra Prasad Central Agricultural University, Pusa, India
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD, Australia
| | - Rajeev K. Varshney
- International Crops Research Institute for the Semi-Arid Tropics, Patancheru, India
- State Agricultural Biotechnology Centre, Crop Research Innovation Centre, Food Futures Institute, Murdoch University, Murdoch, WA, Australia
| | - Surinder Chopra
- Department of Plant Science, Penn State University, University Park, PA, United States
| | - Arti Singh
- Department of Agronomy, Iowa State University, Ames, IA, United States
| | - Asheesh K. Singh
- Department of Agronomy, Iowa State University, Ames, IA, United States
| |
Collapse
|
11
|
Kannan U, Sharma R, Gangola MP, Ganeshan S, Båga M, Chibbar RN. Sequential expression of raffinose synthase and stachyose synthase corresponds to successive accumulation of raffinose, stachyose and verbascose in developing seeds of Lens culinaris Medik. JOURNAL OF PLANT PHYSIOLOGY 2021; 265:153494. [PMID: 34454370 DOI: 10.1016/j.jplph.2021.153494] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 08/05/2021] [Accepted: 08/09/2021] [Indexed: 06/13/2023]
Abstract
Raffinose, stachyose and verbascose form the three major members of the raffinose family oligosaccharides (RFO) accumulated during seed development. Raffinose synthase (RS; EC 2.4.1.82) and stachyose synthase (STS; EC 2.4.1.67) have been associated with raffinose and stachyose synthesis, but the precise mechanism for verbascose synthesis is not well understood. In this study, full-length RS (2.7 kb) and STS (2.6 kb) clones were isolated by screening a cDNA library prepared from developing lentil seeds (18, 20, 22 and 24 days after flowering [DAF]) to understand the roles of RS and STS in RFO accumulation in developing lentil seeds. The nucleotide sequences of RS and STS genes were similar to those reported for Pisum sativum. Patterns of transcript accumulation, enzyme activities and RFO concentrations were also comparable to P. sativum. However, during lentil seed development raffinose, stachyose and verbascose accumulation corresponded to transcript accumulation for RS and STS, with peak transcript abundance occurring at about 22-24 DAF, generally followed by a sequential increase in raffinose, stachyose and verbascose concentrations followed by a steady level thereafter. Enzyme activities for RS, STS and verbascose synthase (VS) also indicated a sudden increase at around 24-26 DAF, but with an abrupt decline again coinciding with the subsequent steady state increase in the RFO. Galactan:galactan galactosyl transferase (GGT), the galactinol-independent pathway enzyme, however, exhibited steady increase in activity from 24 DAF onwards before abruptly decreasing at 34 DAF. Although GGT activity was detected, isolation of a GGT sequence from the cDNA library was not successful.
Collapse
Affiliation(s)
- Udhaya Kannan
- Department of Plant Sciences, College of Agriculture & Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, S7N 5A8, Canada
| | - Roopam Sharma
- Department of Plant Sciences, College of Agriculture & Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, S7N 5A8, Canada
| | - Manu P Gangola
- Department of Plant Sciences, College of Agriculture & Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, S7N 5A8, Canada
| | - Seedhabadee Ganeshan
- Department of Plant Sciences, College of Agriculture & Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, S7N 5A8, Canada
| | - Monica Båga
- Department of Plant Sciences, College of Agriculture & Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, S7N 5A8, Canada
| | - Ravindra N Chibbar
- Department of Plant Sciences, College of Agriculture & Bioresources, University of Saskatchewan, 51 Campus Drive, Saskatoon, Saskatchewan, S7N 5A8, Canada.
| |
Collapse
|
12
|
DeMers LC, Raboy V, Li S, Saghai Maroof MA. Network Inference of Transcriptional Regulation in Germinating Low Phytic Acid Soybean Seeds. FRONTIERS IN PLANT SCIENCE 2021; 12:708286. [PMID: 34531883 PMCID: PMC8438133 DOI: 10.3389/fpls.2021.708286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 06/23/2021] [Indexed: 05/14/2023]
Abstract
The low phytic acid (lpa) trait in soybeans can be conferred by loss-of-function mutations in genes encoding myo-inositol phosphate synthase and two epistatically interacting genes encoding multidrug-resistance protein ATP-binding cassette (ABC) transporters. However, perturbations in phytic acid biosynthesis are associated with poor seed vigor. Since the benefits of the lpa trait, in terms of end-use quality and sustainability, far outweigh the negatives associated with poor seed performance, a fuller understanding of the molecular basis behind the negatives will assist crop breeders and engineers in producing variates with lpa and better germination rate. The gene regulatory network (GRN) for developing low and normal phytic acid soybean seeds was previously constructed, with genes modulating a variety of processes pertinent to phytic acid metabolism and seed viability being identified. In this study, a comparative time series analysis of low and normal phytic acid soybeans was carried out to investigate the transcriptional regulatory elements governing the transitional dynamics from dry seed to germinated seed. GRNs were reverse engineered from time series transcriptomic data of three distinct genotypic subsets composed of lpa soybean lines and their normal phytic acid sibling lines. Using a robust unsupervised network inference scheme, putative regulatory interactions were inferred for each subset of genotypes. These interactions were further validated by published regulatory interactions found in Arabidopsis thaliana and motif sequence analysis. Results indicate that lpa seeds have increased sensitivity to stress, which could be due to changes in phytic acid levels, disrupted inositol phosphate signaling, disrupted phosphate ion (Pi) homeostasis, and altered myo-inositol metabolism. Putative regulatory interactions were identified for the latter two processes. Changes in abscisic acid (ABA) signaling candidate transcription factors (TFs) putatively regulating genes in this process were identified as well. Analysis of the GRNs reveal altered regulation in processes that may be affecting the germination of lpa soybean seeds. Therefore, this work contributes to the ongoing effort to elucidate molecular mechanisms underlying altered seed viability, germination and field emergence of lpa crops, understanding of which is necessary in order to mitigate these problems.
Collapse
Affiliation(s)
- Lindsay C. DeMers
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - Victor Raboy
- National Small Grains Germplasm Research Center, Agricultural Research Service (USDA), Aberdeen, ID, United States
| | - Song Li
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - M. A. Saghai Maroof
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| |
Collapse
|
13
|
Minen RI, Martinez MP, Iglesias AA, Figueroa CM. Biochemical characterization of recombinant UDP-sugar pyrophosphorylase and galactinol synthase from Brachypodium distachyon. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 155:780-788. [PMID: 32866791 DOI: 10.1016/j.plaphy.2020.08.030] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 08/13/2020] [Accepted: 08/13/2020] [Indexed: 06/11/2023]
Abstract
Raffinose (Raf) protects plant cells during seed desiccation and under different abiotic stress conditions. The biosynthesis of Raf starts with the production of UDP-galactose by UDP-sugar pyrophosphorylase (USPPase) and continues with the synthesis of galactinol by galactinol synthase (GolSase). Galactinol is then used by Raf synthase to produce Raf. In this work, we report the biochemical characterization of USPPase (BdiUSPPase) and GolSase 1 (BdiGolSase1) from Brachypodium distachyon. The catalytic efficiency of BdiUSPPase was similar with galactose 1-phosphate and glucose 1-phosphate, but 5- to 17-fold lower with other sugar 1-phosphates. The catalytic efficiency of BdiGolSase1 with UDP-galactose was three orders of magnitude higher than with UDP-glucose. A structural model of BdiGolSase1 allowed us to determine the residues putatively involved in the binding of substrates. Among these, we found that Cys261 lies within the putative catalytic pocket. BdiGolSase1 was inactivated by oxidation with diamide and H2O2. The activity of the diamide-oxidized enzyme was recovered by reduction with dithiothreitol or E. coli thioredoxin, suggesting that BdiGolSase1 is redox-regulated.
Collapse
Affiliation(s)
- Romina I Minen
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - María P Martinez
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - Alberto A Iglesias
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - Carlos M Figueroa
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina.
| |
Collapse
|
14
|
Al-Amery M, Fowler A, Unrine JM, Armstrong P, Maghirang E, Su K, de Melo J, Yuan FJ, Shu QY, Hildebrand D. Generation and Characterization of a Soybean Line with a Vernonia galamensis Diacylglycerol Acyltransferase-1 Gene and a myo-Inositol 1-Phosphate Synthase Knockout Mutation. Lipids 2020; 55:469-477. [PMID: 32542681 DOI: 10.1002/lipd.12253] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 03/26/2020] [Accepted: 04/29/2020] [Indexed: 11/07/2022]
Abstract
Soybean (Glycine max) meal is an important protein source. Soybean meal with lower phytate and oligosaccharides improves meal quality. A single recessive mutation in soybean myo-inositol 1-phosphate synthase (Gm-lpa-TW75-1) confers a seed phenotype with low phytate and increased inorganic phosphate. The mutant was crossed with high oil lines expressing a diacylglycerol acyltransferase1 (DGAT) gene from Vernonia galamensis (VgD). Gm-lpa-TW75-1 X VgD, designated GV, has 21%, and 22% oil and 41% and 43% protein from field and greenhouse seed production, respectively. No significant differences were found in mineral concentrations except for Fe which was 229 μg/g dry mass for GV followed by 174.3 for VgD and 162 for Gm-lpa-TW75-1. Phosphate (Pi) is higher in Gm-lpa-TW75-1 as expected at 5 mg/g, followed by GV at 1.6 mg/g whereas Jack, VgD, and Taiwan75 have about 0.3 mg/g. The Gm-lpa-TW75-1 line has the lowest phytate concentration at 1.4 mg/g followed by GV with 1.8 mg/g compared to Taiwan75, VgD, and Jack with 2.5 mg/g. This work describes a high oil and protein soybean line, GV, with increased Pi and lower phytate which will increase the nutritional value for human and animal feed.
Collapse
Affiliation(s)
- Maythem Al-Amery
- Department of Biology, College of Science for Women, University of Baghdad, Karrada, Al-Jadriya, 10071, Iraq
| | - Ashley Fowler
- Department of Animal and Food Sciences, University of Kentucky, 808 W.P. Garrigus Building, Lexington, KY, USA
| | - Jason M Unrine
- Department of Plant and Soil Sciences, University of Kentucky, Plant Science Building, 1405 Veterans Drive, Lexington, KY, USA
| | - Paul Armstrong
- USDA-ARS, SPIERU-CGAHR, 1515 College Avenue, Manhattan, KS, 66502, USA
| | | | - Kai Su
- Department of Plant and Soil Sciences, University of Kentucky, Plant Science Building, 1405 Veterans Drive, Lexington, KY, USA
| | - Julia de Melo
- UNESP Campus, Jaboticabal, State of Sao Paulo, 295, 9 de julho street, Conchal, São Paulo, 13835-000, Brazil
| | - Feng-Jie Yuan
- Zhejiang Provincial Key Laboratory for Germplasm Resources, Institute of Crop Science, Zhejiang University, Hangzhou, 310058, China
| | - Qing-Yao Shu
- Zhejiang Provincial Key Laboratory for Germplasm Resources, Institute of Crop Science, Zhejiang University, Hangzhou, 310058, China
| | - David Hildebrand
- Department of Plant and Soil Sciences, University of Kentucky, Plant Science Building, 1405 Veterans Drive, Lexington, KY, USA
| |
Collapse
|
15
|
Redekar NR, Glover NM, Biyashev RM, Ha BK, Raboy V, Maroof MAS. Genetic interactions regulating seed phytate and oligosaccharides in soybean (Glycine max L.). PLoS One 2020; 15:e0235120. [PMID: 32584851 PMCID: PMC7316244 DOI: 10.1371/journal.pone.0235120] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 06/08/2020] [Indexed: 12/20/2022] Open
Abstract
Two low-phytate soybean (Glycine max (L.) Merr.) mutant lines- V99-5089 (mips mutation on chromosome 11) and CX-1834 (mrp-l and mrp-n mutations on chromosomes 19 and 3, respectively) have proven to be valuable resources for breeding of low-phytate, high-sucrose, and low-raffinosaccharide soybeans, traits that are highly desirable from a nutritional and environmental standpoint. A recombinant inbred population derived from the cross CX1834 x V99-5089 provides an opportunity to study the effect of different combinations of these three mutations on soybean phytate and oligosaccharides levels. Of the 173 recombinant inbred lines tested, 163 lines were homozygous for various combinations of MIPS and two MRP loci alleles. These individuals were grouped into eight genotypic classes based on the combination of SNP alleles at the three mutant loci. The two genotypic classes that were homozygous mrp-l/mrp-n and either homozygous wild-type or mutant at the mips locus (MIPS/mrp-l/mrp-n or mips/mrp-l/mrp-n) displayed relatively similar ~55% reductions in seed phytate, 6.94 mg g -1 and 6.70 mg g-1 respectively, as compared with 15.2 mg g-1 in the wild-type MIPS/MRP-L/MRP-N seed. Therefore, in the presence of the double mutant mrp-l/mrp-n, the mips mutation did not cause a substantially greater decrease in seed phytate level. However, the nutritionally-desirable high-sucrose/low-stachyose/low-raffinose seed phenotype originally observed in soybeans homozygous for the mips allele was reversed in the presence of mrp-l/mrp-n mutations: homozygous mips/mrp-l/mrp-n seed displayed low-sucrose (7.70%), high-stachyose (4.18%), and the highest observed raffinose (0.94%) contents per gram of dry seed. Perhaps the block in phytic acid transport from its cytoplasmic synthesis site to its storage site, conditioned by mrp-l/mrp-n, alters myo-inositol flux in mips seeds in a way that restores to wild-type levels the mips conditioned reductions in raffinosaccharides. Overall this study determined the combinatorial effects of three low phytic acid causing mutations on regulation of seed phytate and oligosaccharides in soybean.
Collapse
Affiliation(s)
- Neelam R. Redekar
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Natasha M. Glover
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Ruslan M. Biyashev
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Bo-Keun Ha
- Institute of Plant Breeding, Genetics & Genomics, University of Georgia, Athens, Georgia, United States of America
| | - Victor Raboy
- National Small Grains Germplasm Center, USDA-ARS, Aberdeen, Idaho, United States of America
| | - M. A. Saghai Maroof
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| |
Collapse
|
16
|
Hagely KB, Jo H, Kim JH, Hudson KA, Bilyeu K. Molecular-assisted breeding for improved carbohydrate profiles in soybean seed. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:1189-1200. [PMID: 31960089 DOI: 10.1007/s00122-020-03541-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Accepted: 01/07/2020] [Indexed: 06/10/2023]
Abstract
KEY MESSAGE Two independent variant raffinose synthase 3 (RS3) alleles produced an equivalent phenotype and implicated the gene as a key contributor to soybean seed carbohydrate phenotype. Soybean is an important crop because the processed seed is utilized as a vegetable oil and a high protein meal typically used in livestock feeds. Raffinose and stachyose, the raffinose family of oligosaccharides (RFO) carbohydrate components of the seed, are synthesized in developing soybean seeds from sucrose and galactinol. Sucrose is considered positive for metabolizable energy, while RFO are anti-nutritional factors in diets of monogastric animals such as humans, poultry, and swine. To increase metabolizable energy available in soybean seed meal, prior research has been successful in deploying variant alleles of key soybean raffinose synthase (RS) genes leading to reductions or near elimination of seed RFO, with significant increases in seed sucrose. The objective of this research was to investigate the specific role of variants of the RS3 gene in a genomic context and improve molecular marker-assisted selection for the ultra-low (UL) RFO phenotype in soybean seeds. The results revealed a new variant of the RS3 allele (rs3 snp5, rs3 snp6) contributed to the UL RFO phenotype when mutant alleles of RS2 were present. The variant RS3 allele identified was present in about 15% of a small set of soybean cultivars released in North America. A missense allele of the RS3 gene (rs3 G75E) also produced the UL RFO phenotype when combined with mutant alleles of RS2. The discoveries reported here enable direct marker-assisted selection for an improved soybean meal trait that has the potential to add value to soybean by improving the metabolizable energy of the meal.
Collapse
Affiliation(s)
- Katherine B Hagely
- Division of Plant Sciences, University of Missouri, 110 Waters Hall, Columbia, MO, 65211, USA
| | - Hyun Jo
- School of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Jeong-Hwa Kim
- Division of Plant Sciences, University of Missouri, 110 Waters Hall, Columbia, MO, 65211, USA
| | - Karen A Hudson
- USDA/ARS Crop Production and Pest Control Research Unit, Purdue University, 915 West State Street, Lilly Hall, West Lafayette, IN, 47907, USA
| | - Kristin Bilyeu
- USDA/ARS Plant Genetics Research Unit, University of Missouri, 110 Waters Hall, Columbia, MO, 65211, USA.
| |
Collapse
|
17
|
Low phytic acid Crops: Observations Based On Four Decades of Research. PLANTS 2020; 9:plants9020140. [PMID: 31979164 PMCID: PMC7076677 DOI: 10.3390/plants9020140] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 01/16/2020] [Accepted: 01/17/2020] [Indexed: 02/06/2023]
Abstract
The low phytic acid (lpa), or "low-phytate" seed trait can provide numerous potential benefits to the nutritional quality of foods and feeds and to the sustainability of agricultural production. Major benefits include enhanced phosphorus (P) management contributing to enhanced sustainability in non-ruminant (poultry, swine, and fish) production; reduced environmental impact due to reduced waste P in non-ruminant production; enhanced "global" bioavailability of minerals (iron, zinc, calcium, magnesium) for both humans and non-ruminant animals; enhancement of animal health, productivity and the quality of animal products; development of "low seed total P" crops which also can enhance management of P in agricultural production and contribute to its sustainability. Evaluations of this trait by industry and by advocates of biofortification via breeding for enhanced mineral density have been too short term and too narrowly focused. Arguments against breeding for the low-phytate trait overstate the negatives such as potentially reduced yields and field performance or possible reductions in phytic acid's health benefits. Progress in breeding or genetically-engineering high-yielding stress-tolerant low-phytate crops continues. Perhaps due to the potential benefits of the low-phytate trait, the challenge of developing high-yielding, stress-tolerant low-phytate crops has become something of a holy grail for crop genetic engineering. While there are widely available and efficacious alternative approaches to deal with the problems posed by seed-derived dietary phytic acid, such as use of the enzyme phytase as a feed additive, or biofortification breeding, if there were an interest in developing low-phytate crops with good field performance and good seed quality, it could be accomplished given adequate time and support. Even with a moderate reduction in yield, in light of the numerous benefits of low-phytate types as human foods or animal feeds, should one not grow a nutritionally-enhanced crop variant that perhaps has 5% to 10% less yield than a standard variant but one that is substantially more nutritious? Such crops would be a benefit to human nutrition especially in populations at risk for iron and zinc deficiency, and a benefit to the sustainability of agricultural production.
Collapse
|
18
|
Borlini G, Rovera C, Landoni M, Cassani E, Pilu R. lpa1-5525: A New lpa1 Mutant Isolated in a Mutagenized Population by a Novel Non-Disrupting Screening Method. PLANTS 2019; 8:plants8070209. [PMID: 31284582 PMCID: PMC6681281 DOI: 10.3390/plants8070209] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2019] [Revised: 06/29/2019] [Accepted: 07/04/2019] [Indexed: 11/16/2022]
Abstract
Phytic acid, or myo-inositol 1,2,3,4,5,6-hexakisphosphate, is the main storage form of phosphorus in plants. It is localized in seeds, deposited as mixed salts of mineral cations in protein storage vacuoles; during germination, it is hydrolyzed by phytases to make available P together with all the other cations needed for seed germination. When seeds are used as food or feed, phytic acid and the bound cations are poorly bioavailable for human and monogastric livestock due to their lack of phytase activity. Therefore, reducing the amount of phytic acid is one strategy in breeding programs aimed to improve the nutritional properties of major crops. In this work, we present data on the isolation of a new maize (Zea mays L.) low phytic acid 1 (lpa1) mutant allele obtained by transposon tagging mutagenesis with the Ac element. We describe the generation of the mutagenized population and the screening to isolate new lpa1 mutants. In particular, we developed a fast, cheap and non-disrupting screening method based on the different density of lpa1 seed compared to the wild type. This assay allowed the isolation of the lpa1-5525 mutant characterized by a new mutation in the lpa1 locus associated with a lower amount of phytic phosphorus in the seeds in comparison with the wild type.
Collapse
Affiliation(s)
- Giulia Borlini
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Università degli Studi di Milano, Via Celoria 2, 20133 Milan, Italy
| | - Cesare Rovera
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Università degli Studi di Milano, Via Celoria 2, 20133 Milan, Italy
| | - Michela Landoni
- Department of Biosciences-Università degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy
| | - Elena Cassani
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Università degli Studi di Milano, Via Celoria 2, 20133 Milan, Italy
| | - Roberto Pilu
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Università degli Studi di Milano, Via Celoria 2, 20133 Milan, Italy.
| |
Collapse
|
19
|
Kumar A, Kumar V, Krishnan V, Hada A, Marathe A, C P, Jolly M, Sachdev A. Seed targeted RNAi-mediated silencing of GmMIPS1 limits phytate accumulation and improves mineral bioavailability in soybean. Sci Rep 2019; 9:7744. [PMID: 31123331 PMCID: PMC6533290 DOI: 10.1038/s41598-019-44255-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 03/26/2019] [Indexed: 11/30/2022] Open
Abstract
Phytic acid (PA), the major phosphorus reserve in soybean seeds (60-80%), is a potent ion chelator, causing deficiencies that leads to malnutrition. Several forward and reverse genetics approaches have ever since been explored to reduce its phytate levels to improve the micronutrient and phosphorous availability. Transgenic technology has met with success by suppressing the expression of the PA biosynthesis-related genes in several crops for manipulating their phytate content. In our study, we targeted the disruption of the expression of myo-inositol-3-phosphate synthase (MIPS1), the first and the rate limiting enzyme in PA biosynthesis in soybean seeds, by both antisense (AS) and RNAi approaches, using a seed specific promoter, vicilin. PCR and Southern analysis revealed stable integration of transgene in the advanced progenies. The transgenic seeds (T4) of AS (MS14-28-12-29-3-5) and RNAi (MI51-32-22-1-13-6) soybean lines showed 38.75% and 41.34% reduction in phytate levels respectively, compared to non-transgenic (NT) controls without compromised growth and seed development. The electron microscopic examination also revealed reduced globoid crystals in the Protein storage vacoules (PSVs) of mature T4 seeds compared to NT seed controls. A significant increase in the contents of Fe2+ (15.4%, 21.7%), Zn2+ (7.45%, 11.15%) and Ca2+ (10.4%, 15.35%) were observed in MS14-28-12-29-3-5 and MI51-32-22-1-13-6 transgenic lines, respectively, compared to NT implicating improved mineral bioavailability. This study signifies proof-of-concept demonstration of seed-specific PA reduction and paves the path towards low phytate soybean through pathway engineering using the new and precise editing tools.
Collapse
Affiliation(s)
- Awadhesh Kumar
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
- Division of Crop Physiology and Biochemistry, ICAR-National Rice Research Institute, Cuttack, Odisha, India
| | - Varun Kumar
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, (H.P.), India
| | - Veda Krishnan
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
| | - Alkesh Hada
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
| | - Ashish Marathe
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
| | - Parameswaran C
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
- Division of Crop Physiology and Biochemistry, ICAR-National Rice Research Institute, Cuttack, Odisha, India
| | - Monica Jolly
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India
| | - Archana Sachdev
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, 110 012, India.
| |
Collapse
|
20
|
Goßner S, Yuan F, Zhou C, Tan Y, Shu Q, Engel KH. Stability of the Metabolite Signature Resulting from the MIPS1 Mutation in Low Phytic Acid Soybean ( Glycine max L. Merr.) Mutants upon Cross-Breeding. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:5043-5052. [PMID: 30977368 DOI: 10.1021/acs.jafc.9b00817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The low phytic acid ( lpa) soybean ( Glycine max L. Merr.) mutant Gm-lpa-TW-1-M, resulting from a 2 bp deletion in GmMIPS1, was crossed with a commercial cultivar. F3 and F5 progenies were subjected to nontargeted GC-based metabolite profiling, allowing analysis of a broad array of low molecular weight constituents. In the homozygous lpa mutant progenies the intended phytic acid reduction was accompanied by remarkable metabolic changes of nutritionally relevant constituents such as reduced contents of raffinose oligosaccharides and galactosyl cyclitols as well as increased concentrations in sucrose and various free amino acids. The mutation-induced metabolite signature was nearly unaffected by the cross-breeding and consistently expressed over generations and in different growing seasons. Therefore, not only the primary MIPS1 lpa mutant but also its progenies might be valuable genetic resources for commercial breeding programs to produce soybean seeds stably exhibiting improved phytate-related and nutritional properties.
Collapse
Affiliation(s)
- Sophia Goßner
- Chair of General Food Technology , Technical University of Munich , Maximus-von-Imhof-Forum 2 , Freising-Weihenstephan D-85354 , Germany
| | - Fengjie Yuan
- Institute of Crop Science and Nuclear Technology Utilization , Zhejiang Academy of Agricultural Sciences , Hangzhou 310021 , China
| | - Chenguang Zhou
- Chair of General Food Technology , Technical University of Munich , Maximus-von-Imhof-Forum 2 , Freising-Weihenstephan D-85354 , Germany
| | - Yuanyuan Tan
- State Key Laboratory of Rice Biology and Zhejiang Provincial Key Laboratory of Plant Germplasm, Institute of Crop Sciences , Zhejiang University , Hangzhou 310058 , China
| | - Qingyao Shu
- State Key Laboratory of Rice Biology and Zhejiang Provincial Key Laboratory of Plant Germplasm, Institute of Crop Sciences , Zhejiang University , Hangzhou 310058 , China
| | - Karl-Heinz Engel
- Chair of General Food Technology , Technical University of Munich , Maximus-von-Imhof-Forum 2 , Freising-Weihenstephan D-85354 , Germany
| |
Collapse
|
21
|
Kishor DS, Lee C, Lee D, Venkatesh J, Seo J, Chin JH, Jin Z, Hong SK, Ham JK, Koh HJ. Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.). PLoS One 2019; 14:e0209636. [PMID: 30870429 PMCID: PMC6417671 DOI: 10.1371/journal.pone.0209636] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 02/19/2019] [Indexed: 01/26/2023] Open
Abstract
In plants, myo-inositol-1,2,3,4,5,6-hexakisphosphate (InsP6), also known as phytic acid (PA), is a major component of organic phosphorus (P), and accounts for up to 85% of the total P in seeds. In rice (Oryza sativa L.), PA mainly accumulates in rice bran, and chelates mineral cations, resulting in mineral deficiencies among brown rice consumers. Therefore, considerable efforts have been focused on the development of low PA (LPA) rice cultivars. In this study, we performed genetic and molecular analyses of OsLpa1, a major PA biosynthesis gene, in Sanggol, a low PA mutant variety developed via chemical mutagenesis of Ilpum rice cultivar. Genetic segregation and sequencing analyses revealed that a recessive allele, lpa1-3, at the OsLpa1 locus (Os02g0819400) was responsible for a significant reduction in seed PA content in Sanggol. The lpa1-3 gene harboured a point mutation (C623T) in the fourth exon of the predicted coding region, resulting in threonine (Thr) to isoleucine (Ile) amino acidsubstitution at position 208 (Thr208Ile). Three-dimensional analysis of Lpa1 protein structure indicated that myo-inositol 3-monophosphate [Ins(3)P1] could bind to the active site of Lpa1, with ATP as a cofactor for catalysis. Furthermore, the presence of Thr208 in the loop adjacent to the entry site of the binding pocket suggests that Thr208Ile substitution is involved in regulating enzyme activity via phosphorylation. Therefore, we propose that Thr208Ile substitution in lpa1-3 reduces Lpa1 enzyme activity in Sanggol, resulting in reduced PA biosynthesis.
Collapse
Affiliation(s)
- D. S. Kishor
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
| | - Choonseok Lee
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
| | - Dongryung Lee
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
| | - Jelli Venkatesh
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
| | - Jeonghwan Seo
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
| | - Joong Hyoun Chin
- Graduate School of Integrated Bioindustry, Sejong University, Seoul, Republic of Korea
| | - Zhuo Jin
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
| | - Soon-Kwan Hong
- Division of Biotechnology, Kangwon National University, Chuncheon, Gangwon-do, Republic of Korea
| | - Jin-Kwan Ham
- Gangwon provincial Agricultural Research & Extension Services, Chuncheon, Gangwon-do, Republic of Korea
| | - Hee Jong Koh
- Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Science, Seoul National University, Seoul, Republic of Korea
- * E-mail:
| |
Collapse
|
22
|
Zhou C, Tan Y, Goßner S, Li Y, Shu Q, Engel KH. Stability of the Metabolite Signature Resulting from the OsSULTR3;3 Mutation in Low Phytic Acid Rice ( Oryza sativa L.) Seeds upon Cross-breeding. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:9366-9376. [PMID: 30111098 DOI: 10.1021/acs.jafc.8b03921] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The low phytic acid ( lpa) rice ( Oryza sativa L.) mutant Os-lpa-MH86-1, resulting from the mutation of the putative sulfate transporter gene OsSULTR3;3, was crossed with a commercial rice cultivar. The obtained progenies of generations F4 to F7 were subjected to a nontargeted metabolite profiling approach allowing the analyses of a broad spectrum of lipophilic and hydrophilic low-molecular-weight constituents. The metabolite profiles of the homozygous lpa progenies were characterized not only by a decreased concentration of phytic acid but also by increased contents of constituents from various classes, such as sugars, sugar alcohols, amino acids, phytosterols, and biogenic amines. Statistical assessments of the data via multivariate and univariate approaches demonstrated that this mutation-induced metabolite signature was nearly unaffected by the cross-breeding step and consistently expressed over several generations. The data demonstrate that even for complex metabolic changes resulting from a mutation, cross-breeding can be employed as a tool to generate progeny rice seeds stably exhibiting the mutation induced traits.
Collapse
Affiliation(s)
- Chenguang Zhou
- Chair of General Food Technology , Technical University of Munich , Maximus-von-Imhof-Forum 2 , D-85354 Freising-Weihenstephan , Germany
| | - Yuanyuan Tan
- State Key Laboratory of Rice Biology and Zhejiang Provincial Key Laboratory of Plant Germplasm, Institute of Crop Sciences , Zhejiang University , Hangzhou 310058 , China
| | - Sophia Goßner
- Chair of General Food Technology , Technical University of Munich , Maximus-von-Imhof-Forum 2 , D-85354 Freising-Weihenstephan , Germany
| | - Youfa Li
- Jiaxing Academy of Agricultural Sciences , Jiaxing 314016 , China
| | - Qingyao Shu
- State Key Laboratory of Rice Biology and Zhejiang Provincial Key Laboratory of Plant Germplasm, Institute of Crop Sciences , Zhejiang University , Hangzhou 310058 , China
| | - Karl-Heinz Engel
- Chair of General Food Technology , Technical University of Munich , Maximus-von-Imhof-Forum 2 , D-85354 Freising-Weihenstephan , Germany
| |
Collapse
|
23
|
Wiggins SJ, Smallwood CJ, West DR, Kopsell DA, Sams CE, Pantalone VR. Agronomic Performance and Seed Inorganic Phosphorus Stability of Low-Phytate Soybean Line TN09-239. J AM OIL CHEM SOC 2018. [DOI: 10.1002/aocs.12094] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | - Chris J. Smallwood
- Department of Plant Sciences; University of Tennessee, 2431 Joe Johnson Dr.; Knoxville TN 37996-4561 USA
| | - Dennis R. West
- Department of Plant Sciences; University of Tennessee, 2431 Joe Johnson Dr.; Knoxville TN 37996-4561 USA
| | - Dean A. Kopsell
- Environmental Horticulture Department; University of Florida, 2550 Hull Rd.; Gainesville FL 32611-0670 USA
| | - Carl E. Sams
- Department of Plant Sciences; University of Tennessee, 2431 Joe Johnson Dr.; Knoxville TN 37996-4561 USA
| | - Vincent R. Pantalone
- Department of Plant Sciences; University of Tennessee, 2431 Joe Johnson Dr.; Knoxville TN 37996-4561 USA
| |
Collapse
|
24
|
Punjabi M, Bharadvaja N, Jolly M, Dahuja A, Sachdev A. Development and Evaluation of Low Phytic Acid Soybean by siRNA Triggered Seed Specific Silencing of Inositol Polyphosphate 6-/3-/5-Kinase Gene. FRONTIERS IN PLANT SCIENCE 2018; 9:804. [PMID: 29963066 PMCID: PMC6011814 DOI: 10.3389/fpls.2018.00804] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Accepted: 05/25/2018] [Indexed: 05/27/2023]
Abstract
Soybean is one of the leading oilseed crop in the world and is showing a remarkable surge in its utilization in formulating animal feeds and supplements. Its dietary consumption, however, is incongruent with its existing industrial demand due to the presence of anti-nutritional factors in sufficiently large amounts. Phytic acid in particular raises concern as it causes a concomitant loss of indigestible complexed minerals and charged proteins in the waste and results in reduced mineral bioavailability in both livestock and humans. Reducing the seed phytate level thus seems indispensable to overcome the nutritional menace associated with soy grain consumption. In order to conceive our objective we designed and expressed a inositol polyphosphate 6-/3-/5-kinase gene-specific RNAi construct in the seeds of Pusa-16 soybean cultivar. We subsequently conducted a genotypic, phenotypic and biochemical analysis of the developed putative transgenic populations and found very low phytic acid levels, moderate accumulation of inorganic phosphate and elevated mineral content in some lines. These low phytic acid lines did not show any reduction in seedling emergence and displayed an overall good agronomic performance.
Collapse
Affiliation(s)
- Mansi Punjabi
- Department of Biotechnology, Delhi Technological University, New Delhi, India
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Navneeta Bharadvaja
- Department of Biotechnology, Delhi Technological University, New Delhi, India
| | - Monica Jolly
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Anil Dahuja
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Archana Sachdev
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| |
Collapse
|
25
|
Chiozzotto R, Ramírez M, Talbi C, Cominelli E, Girard L, Sparvoli F, Hernández G. Characterization of the Symbiotic Nitrogen-Fixing Common Bean Low Phytic Acid (lpa1) Mutant Response to Water Stress. Genes (Basel) 2018; 9:E99. [PMID: 29462877 PMCID: PMC5852595 DOI: 10.3390/genes9020099] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Revised: 02/05/2018] [Accepted: 02/12/2018] [Indexed: 12/31/2022] Open
Abstract
The common bean (Phaseolus vulgaris L.) low phytic acid (lpa1) biofortified genotype produces seeds with improved nutritional characteristics and does not display negative pleiotropic effects. Here we demonstrated that lpa1 plants establish an efficient nitrogen-fixing symbiosis with Rhizobium etli CE3. The lpa1 nodules showed a higher expression of nodule-function related genes than the nodules of the parental wild type genotype (BAT 93). We analyzed the response to water stress of lpa1 vs. BAT 93 plants grown under fertilized or under symbiotic N₂-fixation conditions. Water stress was induced by water withholding (up to 14% soil moisture) to fertilized or R. etli nodulated plants previously grown with normal irrigation. The fertilized lpa1 plants showed milder water stress symptoms during the water deployment period and after the rehydration recovery period when lpa1 plants showed less biomass reduction. The symbiotic water-stressed lpa1 plants showed decreased nitrogenase activity that coincides with decreased sucrose synthase gene expression in nodules; lower turgor weight to dry weight (DW) ratio, which has been associated with higher drought resistance index; downregulation of carbon/nitrogen (C/N)-related and upregulation of stress-related genes. Higher expression of stress-related genes was also observed in bacteroids of stressed lpa1 plants that also displayed very high expression of the symbiotic cbb₃ oxidase (fixNd).
Collapse
Affiliation(s)
- Remo Chiozzotto
- Center for Genomic Sciences, National Autonomous University of Mexico, Av, Universidad 1001, Cuernavaca 62210, Mor., Mexico.
| | - Mario Ramírez
- Center for Genomic Sciences, National Autonomous University of Mexico, Av, Universidad 1001, Cuernavaca 62210, Mor., Mexico.
| | - Chouhra Talbi
- Center for Genomic Sciences, National Autonomous University of Mexico, Av, Universidad 1001, Cuernavaca 62210, Mor., Mexico.
| | - Eleonora Cominelli
- Institute of Agricultural Biology and Biotechnology, National Research Council, IBBA-CNR, Via Edoardo Bassini 15, 20133 Milano, Italy.
| | - Lourdes Girard
- Center for Genomic Sciences, National Autonomous University of Mexico, Av, Universidad 1001, Cuernavaca 62210, Mor., Mexico.
| | - Francesca Sparvoli
- Institute of Agricultural Biology and Biotechnology, National Research Council, IBBA-CNR, Via Edoardo Bassini 15, 20133 Milano, Italy.
| | - Georgina Hernández
- Center for Genomic Sciences, National Autonomous University of Mexico, Av, Universidad 1001, Cuernavaca 62210, Mor., Mexico.
| |
Collapse
|
26
|
Belgaroui N, Lacombe B, Rouached H, Hanin M. Phytase overexpression in Arabidopsis improves plant growth under osmotic stress and in combination with phosphate deficiency. Sci Rep 2018; 8:1137. [PMID: 29348608 PMCID: PMC5773496 DOI: 10.1038/s41598-018-19493-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Accepted: 12/07/2017] [Indexed: 12/28/2022] Open
Abstract
Engineering osmotolerant plants is a challenge for modern agriculture. An interaction between osmotic stress response and phosphate homeostasis has been reported in plants, but the identity of molecules involved in this interaction remains unknown. In this study we assessed the role of phytic acid (PA) in response to osmotic stress and/or phosphate deficiency in Arabidopsis thaliana. For this purpose, we used Arabidopsis lines (L7 and L9) expressing a bacterial beta-propeller phytase PHY-US417, and a mutant in inositol polyphosphate kinase 1 gene (ipk1-1), which were characterized by low PA content, 40% (L7 and L9) and 83% (ipk1-1) of the wild-type (WT) plants level. We show that the PHY-overexpressor lines have higher osmotolerance and lower sensitivity to abscisic acid than ipk1-1 and WT. Furthermore, PHY-overexpressors showed an increase by more than 50% in foliar ascorbic acid levels and antioxidant enzyme activities compared to ipk1-1 and WT plants. Finally, PHY-overexpressors are more tolerant to combined mannitol stresses and phosphate deficiency than WT plants. Overall, our results demonstrate that the modulation of PA improves plant growth under osmotic stress, likely via stimulation of enzymatic and non-enzymatic antioxidant systems, and that beside its regulatory role in phosphate homeostasis, PA may be also involved in fine tuning osmotic stress response in plants.
Collapse
Affiliation(s)
- Nibras Belgaroui
- Laboratoire de Biotechnologie et Amélioration des Plantes, Centre de Biotechnologie de Sfax, BP "1177", 3018, Sfax, Tunisia
| | - Benoit Lacombe
- BPMP, CNRS, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France
| | - Hatem Rouached
- BPMP, CNRS, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France.
| | - Moez Hanin
- Laboratoire de Biotechnologie et Amélioration des Plantes, Centre de Biotechnologie de Sfax, BP "1177", 3018, Sfax, Tunisia. .,Unité de Génomique Fonctionnelle et Physiologie des Plantes, Institut Supérieur de Biotechnologie, Université de Sfax, BP "1175", 3038, Sfax, Tunisia.
| |
Collapse
|
27
|
Perera I, Seneweera S, Hirotsu N. Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability. RICE (NEW YORK, N.Y.) 2018; 11:4. [PMID: 29327163 PMCID: PMC5764899 DOI: 10.1186/s12284-018-0200-y] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 01/05/2018] [Indexed: 05/18/2023]
Abstract
Myo-inositol hexaphosphate, also known as phytic acid (PA), is the most abundant storage form of phosphorus in seeds. PA acts as a strong chelator of metal cations to form phytate and is considered an anti-nutrient as it reduces the bioavailability of important micronutrients. Although the major nutrient source for more than one-half of the global population, rice is a poor source of essential micronutrients. Therefore, biofortification and reducing the PA content of rice have arisen as new strategies for increasing micronutrient bioavailability in rice. Furthermore, global climate change effects, particularly rising atmospheric carbon dioxide concentration, are expected to increase the PA content and reduce the concentrations of most of the essential micronutrients in rice grain. Several genes involved in PA biosynthesis have been identified and characterized in rice. Proper understanding of the genes related to PA accumulation during seed development and creating the means to suppress the expression of these genes should provide a foundation for manipulating the PA content in rice grain. Low-PA rice mutants have been developed that have a significantly lower grain PA content, but these mutants also had reduced yields and poor agronomic performance, traits that challenge their effective use in breeding programs. Nevertheless, transgenic technology has been effective in developing low-PA rice without hampering plant growth or seed development. Moreover, manipulating the micronutrient distribution in rice grain, enhancing micronutrient levels and reducing the PA content in endosperm are possible strategies for increasing mineral bioavailability. Therefore, a holistic breeding approach is essential for developing successful low-PA rice lines. In this review, we focus on the key determinants for PA concentration in rice grain and discuss the possible molecular methods and approaches for manipulating the PA content to increase micronutrient bioavailability.
Collapse
Affiliation(s)
- Ishara Perera
- Graduate School of Life Sciences, Toyo University, 1-1-1 Izumino, Itakura-machi, Oura-gun, Gunma, 374-0193 Japan
| | - Saman Seneweera
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD 4350 Australia
| | - Naoki Hirotsu
- Graduate School of Life Sciences, Toyo University, 1-1-1 Izumino, Itakura-machi, Oura-gun, Gunma, 374-0193 Japan
- Centre for Crop Health, University of Southern Queensland, Toowoomba, QLD 4350 Australia
- Faculty of Life Sciences, Toyo University, 1-1-1 Izumino, Itakura-machi, Oura-gun, Gunma, 374-0193 Japan
| |
Collapse
|
28
|
Redekar N, Pilot G, Raboy V, Li S, Saghai Maroof MA. Inference of Transcription Regulatory Network in Low Phytic Acid Soybean Seeds. FRONTIERS IN PLANT SCIENCE 2017; 8:2029. [PMID: 29250090 PMCID: PMC5714895 DOI: 10.3389/fpls.2017.02029] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 11/14/2017] [Indexed: 05/26/2023]
Abstract
A dominant loss of function mutation in myo-inositol phosphate synthase (MIPS) gene and recessive loss of function mutations in two multidrug resistant protein type-ABC transporter genes not only reduce the seed phytic acid levels in soybean, but also affect the pathways associated with seed development, ultimately resulting in low emergence. To understand the regulatory mechanisms and identify key genes that intervene in the seed development process in low phytic acid crops, we performed computational inference of gene regulatory networks in low and normal phytic acid soybeans using a time course transcriptomic data and multiple network inference algorithms. We identified a set of putative candidate transcription factors and their regulatory interactions with genes that have functions in myo-inositol biosynthesis, auxin-ABA signaling, and seed dormancy. We evaluated the performance of our unsupervised network inference method by comparing the predicted regulatory network with published regulatory interactions in Arabidopsis. Some contrasting regulatory interactions were observed in low phytic acid mutants compared to non-mutant lines. These findings provide important hypotheses on expression regulation of myo-inositol metabolism and phytohormone signaling in developing low phytic acid soybeans. The computational pipeline used for unsupervised network learning in this study is provided as open source software and is freely available at https://lilabatvt.github.io/LPANetwork/.
Collapse
Affiliation(s)
- Neelam Redekar
- Department of Crop and Soil Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - Guillaume Pilot
- Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA, United States
| | - Victor Raboy
- National Small Grains Germplasm Research Center, Agricultural Research Service (USDA), Aberdeen, ID, United States
| | - Song Li
- Department of Crop and Soil Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - M. A. Saghai Maroof
- Department of Crop and Soil Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| |
Collapse
|
29
|
Lin Z, Zhang X, Wang Z, Jiang Y, Liu Z, Alexander D, Li G, Wang S, Ding Y. Metabolomic analysis of pathways related to rice grain chalkiness by a notched-belly mutant with high occurrence of white-belly grains. BMC PLANT BIOLOGY 2017; 17:39. [PMID: 28166731 PMCID: PMC5294873 DOI: 10.1186/s12870-017-0985-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Accepted: 01/25/2017] [Indexed: 05/18/2023]
Abstract
BACKGROUND Grain chalkiness is a highly undesirable trait deleterious to rice appearance and milling quality. The physiological and molecular foundation of chalkiness formation is still partially understood, because of the complex interactions between multiple genes and growing environments. RESULTS We report the untargeted metabolomic analysis of grains from a notched-belly mutant (DY1102) with high percentage of white-belly, which predominantly occurs in the bottom part proximal to the embryo. Metabolites in developing grains were profiled on the composite platforms of UPLC/MS/MS and GC/MS. Sampling times were 5, 10, 15, and 20 days after anthesis, the critical time points for chalkiness formation. A total of 214 metabolites were identified, covering most of the central metabolic pathways and partial secondary pathways including amino acids, carbohydrates, lipids, cofactors, peptides, nucleotides, phytohormones, and secondary metabolites. A comparison of the bottom chalky part and the upper translucent part of developing grains of DY1102 resulted in 180 metabolites related to chalkiness formation. CONCLUSIONS Generally, in comparison to the translucent upper part, the chalky endosperm had lower levels of metabolites regarding carbon and nitrogen metabolism for synthesis of storage starch and protein, which was accompanied by perturbation of pathways participating in scavenging of reactive oxygen species, osmorugulation, cell wall synthesis, and mineral ion homeostasis. Based on these results, metabolic mechanism of chalkiness formation is discussed, with the role of embryo highlighted.
Collapse
Affiliation(s)
- Zhaomiao Lin
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
- Crops Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, 350013 People’s Republic of China
| | - Xincheng Zhang
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
| | - Zunxin Wang
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
| | - Yutong Jiang
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
| | - Zhenghui Liu
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
- Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, 210095 People’s Republic of China
| | | | - Ganghua Li
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
| | - Shaohua Wang
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
| | - Yanfeng Ding
- College of Agronomy, Nanjing Agricultural University/Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing, 210095 People’s Republic of China
| |
Collapse
|
30
|
Campbell BW, Stupar RM. Soybean (Glycine max) Mutant and Germplasm Resources: Current Status and Future Prospects. ACTA ACUST UNITED AC 2016; 1:307-327. [PMID: 30775866 DOI: 10.1002/cppb.20015] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Genetic bottlenecks during domestication and modern breeding limited the genetic diversity of soybean (Glycine max (L.) Merr.). Therefore, expanding and diversifying soybean genetic resources is a major priority for the research community. These resources, consisting of natural and induced genetic variants, are valuable tools for improving soybean and furthering soybean biological knowledge. During the twentieth century, researchers gathered a wealth of genetic variation in the forms of landraces, Glycine soja accessions, Glycine tertiary germplasm, and the U.S. Department of Agriculture (USDA) Type and Isoline Collections. During the twenty-first century, soybean researchers have added several new genetic and genomic resources. These include the reference genome sequence, genotype data for the USDA soybean germplasm collection, next-generation mapping populations, new irradiation and transposon-based mutagenesis populations, and designer nuclease platforms for genome engineering. This paper briefly surveys the publicly accessible soybean genetic resources currently available or in development and provides recommendations for developing such genetic resources in the future. © 2016 by John Wiley & Sons, Inc.
Collapse
Affiliation(s)
- Benjamin W Campbell
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota
| | - Robert M Stupar
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota
| |
Collapse
|
31
|
Constitutive Overexpression of Myo-inositol-1-Phosphate Synthase Gene (GsMIPS2) from Glycine soja Confers Enhanced Salt Tolerance at Various Growth Stages in Arabidopsis. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/s1006-8104(16)30045-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
32
|
Gangola MP, Jaiswal S, Kannan U, Gaur PM, Båga M, Chibbar RN. Galactinol synthase enzyme activity influences raffinose family oligosaccharides (RFO) accumulation in developing chickpea (Cicer arietinum L.) seeds. PHYTOCHEMISTRY 2016; 125:88-98. [PMID: 26953100 DOI: 10.1016/j.phytochem.2016.02.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Revised: 02/10/2016] [Accepted: 02/18/2016] [Indexed: 06/05/2023]
Abstract
To understand raffinose family oligosaccharides (RFO) metabolism in chickpea (Cicer arietinum L.) seeds, RFO accumulation and corresponding biosynthetic enzymes activities were determined during seed development of chickpea genotypes with contrasting RFO concentrations. RFO concentration in mature seeds was found as a facilitator rather than a regulating step of seed germination. In mature seeds, raffinose concentrations ranged from 0.38 to 0.68 and 0.75 to 0.99 g/100 g, whereas stachyose concentrations varied from 0.79 to 1.26 and 1.70 to 1.87 g/100 g indicating significant differences between low and high RFO genotypes, respectively. Chickpea genotypes with high RFO concentration accumulated higher concentrations of myo-inositol and sucrose during early seed developmental stages suggesting that initial substrate concentrations may influence RFO concentration in mature seeds. High RFO genotypes showed about two to three-fold higher activity for all RFO biosynthetic enzymes compared to those with low RFO concentrations. RFO biosynthetic enzymes activities correspond with accumulation of individual RFO during seed development.
Collapse
Affiliation(s)
- Manu P Gangola
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
| | - Sarita Jaiswal
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
| | - Udhaya Kannan
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
| | - Pooran M Gaur
- International Crops Research Institute for the Semi-Arid-Tropics, Patancheru near Hyderabad, Telangana, India
| | - Monica Båga
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
| | - Ravindra N Chibbar
- Department of Plant Sciences, College of Agriculture and Bioresources, 51 Campus Drive, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada.
| |
Collapse
|
33
|
Zhang S, Yang W, Zhao Q, Zhou X, Jiang L, Ma S, Liu X, Li Y, Zhang C, Fan Y, Chen R. Analysis of weighted co-regulatory networks in maize provides insights into new genes and regulatory mechanisms related to inositol phosphate metabolism. BMC Genomics 2016; 17:129. [PMID: 26911482 PMCID: PMC4765147 DOI: 10.1186/s12864-016-2476-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Accepted: 02/16/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND D-myo-inositol phosphates (IPs) are a series of phosphate esters. Myo-inositol hexakisphosphate (phytic acid, IP6) is the most abundant IP and has negative effects on animal and human nutrition. IPs play important roles in plant development, stress responses, and signal transduction. However, the metabolic pathways and possible regulatory mechanisms of IPs in maize are unclear. In this study, the B73 (high in phytic acid) and Qi319 (low in phytic acid) lines were selected for RNA-Seq analysis from 427 inbred lines based on a screening of IP levels. By integrating the metabolite data with the RNA-Seq data at three different kernel developmental stages (12, 21 and 30 days after pollination), co-regulatory networks were constructed to explore IP metabolism and its interactions with other pathways. RESULTS Differentially expressed gene analyses showed that the expression of MIPS and ITPK was related to differences in IP metabolism in Qi319 and B73. Moreover, WRKY and ethylene-responsive transcription factors (TFs) were common among the differentially expressed TFs, and are likely to be involved in the regulation of IP metabolism. Six co-regulatory networks were constructed, and three were chosen for further analysis. Based on network analyses, we proposed that the GA pathway interacts with the IP pathway through the ubiquitination pathway, and that Ca(2+) signaling functions as a bridge between IPs and other pathways. IP pools were found to be transported by specific ATP-binding cassette (ABC) transporters. Finally, three candidate genes (Mf3, DH2 and CB5) were identified and validated using Arabidopsis lines with mutations in orthologous genes or RNA interference (RNAi)-transgenic maize lines. Some mutant or RNAi lines exhibited seeds with a low-phytic-acid phenotype, indicating perturbation of IP metabolism. Mf3 likely encodes an enzyme involved in IP synthesis, DH2 encodes a transporter responsible for IP transport across organs and CB5 encodes a transporter involved in IP co-transport into vesicles. CONCLUSIONS This study provides new insights into IP metabolism and regulation, and facilitates our development of a better understanding of the functions of IPs and how they interact with other pathways involved in plant development and stress responses. Three new genes were discovered and preliminarily validated, thereby increasing our knowledge of IP metabolism.
Collapse
Affiliation(s)
- Shaojun Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Wenzhu Yang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Qianqian Zhao
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Xiaojin Zhou
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Ling Jiang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Shuai Ma
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
| | - Xiaoqing Liu
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Ye Li
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Chunyi Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Yunliu Fan
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| | - Rumei Chen
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
- National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), 100081, Beijing, China.
| |
Collapse
|
34
|
Bilyeu KD, Wiebold WJ. Environmental Stability of Seed Carbohydrate Profiles in Soybeans Containing Different Alleles of the Raffinose Synthase 2 (RS2) Gene. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:1071-8. [PMID: 26800264 DOI: 10.1021/acs.jafc.5b04779] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Soybean [Glycine max (L.) Merr.] is important for the high protein meal used for livestock feed formulations. Carbohydrates contribute positively or negatively to the potential metabolizable energy in soybean meal. The positive carbohydrate present in soybean meal consists primarily of sucrose, whereas the negative carbohydrate components are the raffinose family of oligosaccharides (RFOs), raffinose and stachyose. Increasing sucrose and decreasing raffinose and stachyose are critical targets to improve soybean. In three recently characterized lines, variant alleles of the soybean raffinose synthase 2 (RS2) gene were associated with increased sucrose and decreased RFOs. The objective of this research was to compare the environmental stability of seed carbohydrates in soybean lines containing wild-type or variant alleles of RS2 utilizing a field location study and a date of planting study. The results define the carbohydrate variation in distinct regional and temporal environments using soybean lines with different alleles of the RS2 gene.
Collapse
Affiliation(s)
- Kristin D Bilyeu
- Plant Genetics Research Unit, Agricultural Research Service, U.S. Department of Agriculture , 110 Waters Hall, Columbia, Missouri 65211, United States
| | - William J Wiebold
- Division of Plant Sciences, University of Missouri , Columbia, Missouri 65211, United States
| |
Collapse
|
35
|
Rao J, Yang L, Guo J, Quan S, Chen G, Zhao X, Zhang D, Shi J. Metabolic changes in transgenic maize mature seeds over-expressing the Aspergillus niger phyA2. PLANT CELL REPORTS 2016; 35:429-437. [PMID: 26581949 DOI: 10.1007/s00299-015-1894-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 10/20/2015] [Accepted: 11/02/2015] [Indexed: 06/05/2023]
Abstract
Non-targeted metabolomics analysis revealed only intended metabolic changes in transgenic maize over-expressing the Aspergillus niger phyA2. Genetically modified (GM) crops account for a large proportion of modern agriculture worldwide, raising increasingly the public concerns of safety. Generally, according to substantial equivalence principle, if a GM crop is demonstrated to be equivalently safe to its conventional species, it is supposed to be safe. In this study, taking the advantage of an established non-target metabolomic profiling platform based on the combination of UPLC-MS/MS with GC-MS, we compared the mature seed metabolic changes in transgenic maize over-expressing the Aspergillus niger phyA2 with its non-transgenic counterpart and other 14 conventional maize lines. In total, levels of nine out of identified 210 metabolites were significantly changed in transgenic maize as compared with its non-transgenic counterpart, and the number of significantly altered metabolites was reduced to only four when the natural variations were taken into consideration. Notably, those four metabolites were all associated with targeted engineering pathway. Our results indicated that although both intended and non-intended metabolic changes occurred in the mature seeds of this GM maize event, only intended metabolic pathway was found to be out of the range of the natural metabolic variation in the metabolome of the transgenic maize. Therefore, only when natural metabolic variation was taken into account, could non-targeted metabolomics provide reliable objective compositional substantial equivalence analysis on GM crops.
Collapse
Affiliation(s)
- Jun Rao
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China
- Jiangxi Provincial Cancer Hospital, No. 519 East Beijing Road, Nanchang, 330029, China
| | - Litao Yang
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China
| | - Jinchao Guo
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China
| | - Sheng Quan
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China
- Shanghai Ruifeng Agro-biotechnology Co. Ltd, No 233 Rushan Rd., Shanghai, 200120, China
| | - Guihua Chen
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China
| | - Xiangxiang Zhao
- Departmen of Life Science, Huaiyin Normal College, Huaian, 223300, China
| | - Dabing Zhang
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China
- School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, 5064, Australia
| | - Jianxin Shi
- Joint International Research Laboratory of Metabolic and Developmental Sciences, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan RD., Minghan District, Shanghai, 200240, China.
- Shanghai Ruifeng Agro-biotechnology Co. Ltd, No 233 Rushan Rd., Shanghai, 200120, China.
| |
Collapse
|
36
|
de Leonardis AM, Fragasso M, Beleggia R, Ficco DBM, de Vita P, Mastrangelo AM. Effects of Heat Stress on Metabolite Accumulation and Composition, and Nutritional Properties of Durum Wheat Grain. Int J Mol Sci 2015; 16:30382-404. [PMID: 26703576 PMCID: PMC4691181 DOI: 10.3390/ijms161226241] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2015] [Revised: 12/09/2015] [Accepted: 12/14/2015] [Indexed: 11/27/2022] Open
Abstract
Durum wheat (Triticum turgidum (L.) subsp. turgidum (L.) convar. durum (Desf.)) is momentous for human nutrition, and environmental stresses can strongly limit the expression of yield potential and affect the qualitative characteristics of the grain. The aim of this study was to determine how heat stress (five days at 37 °C) applied five days after flowering affects the nutritional composition, antioxidant capacity and metabolic profile of the grain of two durum wheat genotypes: "Primadur", an elite cultivar with high yellow index, and "T1303", an anthocyanin-rich purple cultivar. Qualitative traits and metabolite evaluation (by gas chromatography linked to mass spectrometry) were carried out on immature (14 days after flowering) and mature seeds. The effects of heat stress were genotype-dependent. Although some metabolites (e.g., sucrose, glycerol) increased in response to heat stress in both genotypes, clear differences were observed. Following the heat stress, there was a general increase in most of the analyzed metabolites in "Primadur", with a general decrease in "T1303". Heat shock applied early during seed development produced changes that were observed in immature seeds and also long-term effects that changed the qualitative and quantitative parameters of the mature grain. Therefore, short heat-stress treatments can affect the nutritional value of grain of different genotypes of durum wheat in different ways.
Collapse
Affiliation(s)
- Anna Maria de Leonardis
- Cereal Research Centre, Council for Agricultural Research and Economics, Foggia 71122, Italy.
- Department of the Sciences of Agriculture, Food and Environment, University of Foggia, S.S. 673 Km 25,200, Foggia 71122, Italy.
| | - Mariagiovanna Fragasso
- Cereal Research Centre, Council for Agricultural Research and Economics, Foggia 71122, Italy.
| | - Romina Beleggia
- Cereal Research Centre, Council for Agricultural Research and Economics, Foggia 71122, Italy.
| | | | - Pasquale de Vita
- Cereal Research Centre, Council for Agricultural Research and Economics, Foggia 71122, Italy.
| | - Anna Maria Mastrangelo
- Cereal Research Centre, Council for Agricultural Research and Economics, Foggia 71122, Italy.
| |
Collapse
|
37
|
Redekar NR, Biyashev RM, Jensen RV, Helm RF, Grabau EA, Maroof MAS. Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines. BMC Genomics 2015; 16:1074. [PMID: 26678836 PMCID: PMC4683714 DOI: 10.1186/s12864-015-2283-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2015] [Accepted: 12/10/2015] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Low phytic acid (lpa) crops are potentially eco-friendly alternative to conventional normal phytic acid (PA) crops, improving mineral bioavailability in monogastric animals as well as decreasing phosphate pollution. The lpa crops developed to date carry mutations that are directly or indirectly associated with PA biosynthesis and accumulation during seed development. These lpa crops typically exhibit altered carbohydrate profiles, increased free phosphate, and lower seedling emergence, the latter of which reduces overall crop yield, hence limiting their large-scale cultivation. Improving lpa crop yield requires an understanding of the downstream effects of the lpa genotype on seed development. Towards that end, we present a comprehensive comparison of gene-expression profiles between lpa and normal PA soybean lines (Glycine max) at five stages of seed development using RNA-Seq approaches. The lpa line used in this study carries single point mutations in a myo-inositol phosphate synthase gene along with two multidrug-resistance protein ABC transporter genes. RESULTS RNA sequencing data of lpa and normal PA soybean lines from five seed-developmental stages (total of 30 libraries) were used for differential expression and functional enrichment analyses. A total of 4235 differentially expressed genes, including 512-transcription factor genes were identified. Eighteen biological processes such as apoptosis, glucan metabolism, cellular transport, photosynthesis and 9 transcription factor families including WRKY, CAMTA3 and SNF2 were enriched during seed development. Genes associated with apoptosis, glucan metabolism, and cellular transport showed enhanced expression in early stages of lpa seed development, while those associated with photosynthesis showed decreased expression in late developmental stages. The results suggest that lpa-causing mutations play a role in inducing and suppressing plant defense responses during early and late stages of seed development, respectively. CONCLUSIONS This study provides a global perspective of transcriptomal changes during soybean seed development in an lpa mutant. The mutants are characterized by earlier expression of genes associated with cell wall biosynthesis and a decrease in photosynthetic genes in late stages. The biological processes and transcription factors identified in this study are signatures of lpa-causing mutations.
Collapse
Affiliation(s)
- Neelam R Redekar
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 185 AgQuad Lane, 24061, Blacksburg, VA, USA.
| | - Ruslan M Biyashev
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 185 AgQuad Lane, 24061, Blacksburg, VA, USA.
| | - Roderick V Jensen
- Department of Biological Sciences, Virginia Tech, Life Science I building, 24061, Blacksburg, VA, USA.
| | - Richard F Helm
- Department of Biochemistry, Virginia Tech, Life Science I building, 24061, Blacksburg, VA, USA.
| | - Elizabeth A Grabau
- Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Price Hall, 24061, Blacksburg, VA, USA.
| | - M A Saghai Maroof
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 185 AgQuad Lane, 24061, Blacksburg, VA, USA.
| |
Collapse
|
38
|
Sparvoli F, Cominelli E. Seed Biofortification and Phytic Acid Reduction: A Conflict of Interest for the Plant? PLANTS 2015; 4:728-55. [PMID: 27135349 PMCID: PMC4844270 DOI: 10.3390/plants4040728] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2015] [Accepted: 11/13/2015] [Indexed: 02/03/2023]
Abstract
Most of the phosphorus in seeds is accumulated in the form of phytic acid (myo-inositol-1,2,3,4,5,6-hexakisphosphate, InsP6). This molecule is a strong chelator of cations important for nutrition, such as iron, zinc, magnesium, and calcium. For this reason, InsP6 is considered an antinutritional factor. In recent years, efforts to biofortify seeds through the generation of low phytic acid (lpa) mutants have been noteworthy. Moreover, genes involved in the biosynthesis and accumulation of this molecule have been isolated and characterized in different species. Beyond its role in phosphorus storage, phytic acid is a very important signaling molecule involved in different regulatory processes during plant development and responses to different stimuli. Consequently, many lpa mutants show different negative pleitotropic effects. The strength of these pleiotropic effects depends on the specific mutated gene, possible functional redundancy, the nature of the mutation, and the spatio-temporal expression of the gene. Breeding programs or transgenic approaches aimed at development of new lpa mutants must take into consideration these different aspects in order to maximize the utility of these mutants.
Collapse
Affiliation(s)
- Francesca Sparvoli
- Institute of Agricultural Biology and Biotechnology, CNR, Via Bassini 15, 20133 Milan, Italy.
| | - Eleonora Cominelli
- Institute of Agricultural Biology and Biotechnology, CNR, Via Bassini 15, 20133 Milan, Italy.
| |
Collapse
|
39
|
Jervis J, Kastl C, Hildreth SB, Biyashev R, Grabau EA, Saghai-Maroof MA, Helm RF. Metabolite Profiling of Soybean Seed Extracts from Near-Isogenic Low and Normal Phytate Lines Using Orthogonal Separation Strategies. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:9879-87. [PMID: 26487475 DOI: 10.1021/acs.jafc.5b04002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Untargeted metabolomic profiling using liquid chromatography-mass spectrometry (LC-MS) was applied to lipid-depleted methanolic extracts of soybean seeds utilizing orthogonal chromatographic separations (reversed-phase and hydrophilic interaction) in both positive and negative ionization modes. Four near-isogenic lines (NILs) differing in mutations for two genes encoding highly homologous multidrug resistant proteins (MRPs) were evaluated. The double mutant exhibited a low phytate phenotype, whereas the other three NILs, the two single mutants and the wild type, did not. Principal component analysis (PCA) of the four LC-MS data sets fully separated the low phytate line from the other three. While the levels of neutral oligosaccharides were the same for all lines, there were significant metabolite differences residing in the levels of malonyl isoflavones, soyasaponins, and arginine. Two methanol-soluble polypeptides were also found as differing in abundance levels, one of which was identified as the allergen Gly m 1.
Collapse
Affiliation(s)
- Judith Jervis
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| | - Christin Kastl
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| | - Sherry B Hildreth
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| | - Ruslan Biyashev
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| | - Elizabeth A Grabau
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| | - Mohammad A Saghai-Maroof
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| | - Richard F Helm
- Departments of Biochemistry, ‡Crop and Soil Environmental Sciences, §Biological Sciences, and Plant Pathology, and ∥Physiology and Weed Science, Virginia Tech , Blacksburg, Virginia 24061, United States
| |
Collapse
|
40
|
Qiu D, Vuong T, Valliyodan B, Shi H, Guo B, Shannon JG, Nguyen HT. Identification and characterization of a stachyose synthase gene controlling reduced stachyose content in soybean. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2015; 128:2167-76. [PMID: 26179337 PMCID: PMC4624830 DOI: 10.1007/s00122-015-2575-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2015] [Accepted: 06/27/2015] [Indexed: 05/29/2023]
Abstract
KEY MESSAGE We identified and characterized a mutant of soybean stachyose synthase gene controlling reduced stachyose content which benefit the soybean seed composition breeding program in the future. It has been shown that in soybean, increased sucrose and reduced raffinose family oligosaccharides would have a positive impact on the world's feed industry by improving digestibility and feed efficiency. We searched for new sources of modified oligosaccharide content in a subset of the USDA Soybean Germplasm Collection and then identified plant introduction (PI) 603176A as having ultra-low stachyose content (0.5%). We identified a 33-bp deletion mutant in the putative stachyose synthase gene (STS gene, Glyma19g40550) of PI 603176A. A co-dominate indel marker was successfully developed from this 33-bp deletion area and was genetically mapped into two F 2:3 populations and a F 4:5 population, which associated with low stachyose content in the progeny lines. These observations provided strong evidence that the STS gene is responsible for stachyose biosynthesis in the soybean plant. Expression of the sts gene remained at the normal level, suggesting the loss of function in the gene is due to defective protein function. This gene-based perfect genetic marker for low stachyose content can be useful for marker-assisted selection in soybean molecular breeding programs.
Collapse
Affiliation(s)
- Dan Qiu
- Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, MO, 65211, USA
| | - Tri Vuong
- Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, MO, 65211, USA
| | - Babu Valliyodan
- Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, MO, 65211, USA
| | - Haiying Shi
- Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, MO, 65211, USA
| | - Binhui Guo
- Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, MO, 65211, USA
| | - J Grover Shannon
- Division of Plant Sciences and NCSB, University of Missouri, Portageville, MO, 63873, USA
| | - Henry T Nguyen
- Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, MO, 65211, USA.
| |
Collapse
|
41
|
Affiliation(s)
- Karen Cichy
- USDA-ARS Small Grains and Potato Germplasm Research Unit; Aberdeen Idaho
| | - Victor Raboy
- USDA-ARS Small Grains and Potato Germplasm Research Unit; Aberdeen Idaho
| |
Collapse
|
42
|
Kumar V, Singh TR, Hada A, Jolly M, Ganapathi A, Sachdev A. Probing Phosphorus Efficient Low Phytic Acid Content Soybean Genotypes with Phosphorus Starvation in Hydroponics Growth System. Appl Biochem Biotechnol 2015; 177:689-99. [PMID: 26239443 DOI: 10.1007/s12010-015-1773-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2015] [Accepted: 07/21/2015] [Indexed: 11/25/2022]
Abstract
Phosphorus is an essential nutrient required for soybean growth but is bound in phytic acid which causes negative effects on both the environment as well as the animal nutrition. Lowering of phytic acid levels is associated with reduced agronomic characteristics, and relatively little information is available on the response of soybean plants to phosphorus (P) starvation. In this study, we evaluated the effects of different P starvation concentrations on the phytic acid content, growth, and yield of seven mutant genotypes along with the unirradiated control, JS-335, in a hydroponics growth system. The low phytic acid containing mutant genotypes, IR-JS-101, IR-DS-118, and IR-V-101, showed a relatively high growth rate in low P concentration containing nutrient solution (2 μM), whereas the high P concentration (50 μM) favored the growth of IR-DS-111 and IR-DS-115 mutant genotypes containing moderate phytate levels. The mutant genotypes with high phytic acid content, IR-DS-122, IR-DS-114, and JS-335, responded well under P starvation and did not have any significant effect on the growth and yield of plants. Moreover, the reduction of P concentration in nutrient solution from 50 to 2 μM also reduced the phytic acid content in the seeds of all the soybean genotypes under study. The desirable agronomic performance of low phytic acid containing mutant genotype IR-DS-118 reported in this study suggested it to be a P-efficient genotype which could be considered for agricultural practices under P limiting soils.
Collapse
Affiliation(s)
- Varun Kumar
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Himachal Pradesh, 173234, India
| | - Tiratha Raj Singh
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Himachal Pradesh, 173234, India
| | - Alkesh Hada
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110 012, India
- Department of Biotechnology and Genetic Engineering, Bharathidasan University, Tiruchirappalli, Tamil Nadu, 620024, India
| | - Monica Jolly
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110 012, India
| | - Andy Ganapathi
- Department of Biotechnology and Genetic Engineering, Bharathidasan University, Tiruchirappalli, Tamil Nadu, 620024, India
| | - Archana Sachdev
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110 012, India.
| |
Collapse
|
43
|
Sakai H, Iwai T, Matsubara C, Usui Y, Okamura M, Yatou O, Terada Y, Aoki N, Nishida S, Yoshida KT. A decrease in phytic acid content substantially affects the distribution of mineral elements within rice seeds. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 238:170-177. [PMID: 26259185 DOI: 10.1016/j.plantsci.2015.06.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 05/30/2015] [Accepted: 06/06/2015] [Indexed: 06/04/2023]
Abstract
Phytic acid (myo-inositol hexakisphosphate; InsP6) is the storage compound of phosphorus and many mineral elements in seeds. To determine the role of InsP6 in the accumulation and distribution of mineral elements in seeds, we performed fine mappings of mineral elements through synchrotron-based X-ray microfluorescence analysis using developing seeds from two independent low phytic acid (lpa) mutants of rice (Oryza sativa L.). The reduced InsP6 in lpa seeds did not affect the translocation of mineral elements from vegetative organs into seeds, because the total amounts of phosphorus and the other mineral elements in lpa seeds were identical to those in the wild type (WT). However, the reduced InsP6 caused large changes in mineral localization within lpa seeds. Phosphorus and potassium in the aleurone layer of lpa greatly decreased and diffused into the endosperm. Zinc and copper, which were broadly distributed from the aleurone layer to the inner endosperm in the WT, were localized in the narrower space around the aleurone layer in lpa mutants. We also confirmed that similar distribution changes occurred in transgenic rice with the lpa phenotype. Using these results, we discussed the role of InsP6 in the dynamic accumulation and distribution patterns of mineral elements during seed development.
Collapse
Affiliation(s)
- Hiroaki Sakai
- Faculty of Agriculture, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Toru Iwai
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Chie Matsubara
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Yuto Usui
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Masaki Okamura
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Osamu Yatou
- Crop Development Division, NARO Agricultural Research Center, Inada, Joetsu, Niigata, Japan
| | - Yasuko Terada
- Super Photon Ring-8, Japan Synchrotron Radiation Research Institute, Sayo-cho, Sayo-gun, Hyogo, Japan
| | - Naohiro Aoki
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Sho Nishida
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Kaoru T Yoshida
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
| |
Collapse
|
44
|
|
45
|
A Substantial Fraction of Barley (Hordeum vulgare L.) Low Phytic Acid Mutations Have Little or No Effect on Yield across Diverse Production Environments. PLANTS 2015; 4:225-39. [PMID: 27135325 PMCID: PMC4844328 DOI: 10.3390/plants4020225] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2015] [Revised: 04/17/2015] [Accepted: 04/21/2015] [Indexed: 11/17/2022]
Abstract
The potential benefits of the low phytic acid (lpa) seed trait for human and animal nutrition, and for phosphorus management in non-ruminant animal production, are well documented. However, in many cases the lpa trait is associated with impaired seed or plant performance, resulting in reduced yield. This has given rise to the perception that the lpa trait is tightly correlated with reduced yield in diverse crop species. Here we report a powerful test of this correlation. We measured grain yield in lines homozygous for each of six barley (Hordeum vulgare L.) lpa mutations that greatly differ in their seed phytic acid levels. Performance comparisons were between sibling wild-type and mutant lines obtained following backcrossing, and across two years in five Idaho (USA) locations that greatly differ in crop yield potential. We found that one lpa mutation (Hvlpa1-1) had no detectable effect on yield and a second (Hvlpa4-1) resulted in yield losses of only 3.5%, across all locations. When comparing yields in three relatively non-stressful production environments, at least three lpa mutations (Hvlpa1-1, Hvlpa3-1, and Hvlpa4-1) typically had yields similar to or within 5% of the wild-type sibling isoline. Therefore in the case of barley, lpa mutations can be readily identified that when simply incorporated into a cultivar result in adequately performing lines, even with no additional breeding for performance within the lpa line. In conclusion, while some barley lpa mutations do impact field performance, a substantial fraction appears to have little or no effect on yield.
Collapse
|
46
|
Vincent JA, Stacey M, Stacey G, Bilyeu KD. Phytic Acid and Inorganic Phosphate Composition in Soybean Lines with Independent IPK1 Mutations. THE PLANT GENOME 2015; 8:eplantgenome2014.10.0077. [PMID: 33228287 DOI: 10.3835/plantgenome2014.10.0077] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2014] [Accepted: 11/20/2014] [Indexed: 06/11/2023]
Abstract
Soybean seeds contain a large amount of P, which is stored as phytic acid (PA). Phytic acid is indigestible by nonruminant livestock and considered an antinutritional factor in soybean meal. Several low PA soybean lines have been discovered, but many of these lines have either minor reductions in PA or inadequate germination and emergence. The reduced PA phenotype of soybean line Gm-lpa-ZC-2 was previously shown to be the result of a mutation in a gene encoding an inositol pentakisphosphate 2-kinase on chromosome 14 (14IPK1). While the 14IPK1 mutation was shown to have no impact on germination and emergence, the reduction in PA was modest (up to 50%). Our objective was to determine the effect on seed P partitioning for a novel mutation of an independent IPK1 gene on chromosome six (06IPK1) on its own and in combination with mutant alleles of the 14IPK1. We developed soybean populations and conducted genotype and phenotype association analyses based on the genotype of the 06IPK1 and 14IPK1 genes and the seed P partitioning profile. The lines with both mutant IPK1 genes had very low PA levels, moderate accumulation of inorganic phosphate (Pi), and accumulation of high amounts of P in lower inositols. The developed lines did not have significant reductions in germination or field emergence. In addition, characterization of the lower inositols produced in the mutant lines suggests that IPK1 is a polyphosphate kinase and provides some insight into the PA biosynthesis pathway in soybean seeds.
Collapse
Affiliation(s)
| | - Minviluz Stacey
- Division of Plant Sciences, Univ. of Missouri, Columbia, MO, 65211
| | - Gary Stacey
- Division of Plant Sciences, Univ. of Missouri, Columbia, MO, 65211
| | - Kristin D Bilyeu
- Division of Plant Sciences, Univ. of Missouri, Columbia, MO, 65211
- USDA-ARS, Plant Genetics Research Unit, Columbia, MO, 65211
| |
Collapse
|
47
|
Shunmugam ASK, Bock C, Arganosa GC, Georges F, Gray GR, Warkentin TD. Accumulation of Phosphorus-Containing Compounds in Developing Seeds of Low-Phytate Pea (Pisum sativum L.) Mutants. PLANTS (BASEL, SWITZERLAND) 2014; 4:1-26. [PMID: 27135314 PMCID: PMC4844337 DOI: 10.3390/plants4010001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Accepted: 12/17/2014] [Indexed: 11/16/2022]
Abstract
Low phytic acid (lpa) crops are low in phytic acid and high in inorganic phosphorus (Pi). In this study, two lpa pea genotypes, 1-150-81, 1-2347-144, and their progenitor CDC Bronco were grown in field trials for two years. The lpa genotypes were lower in IP₆ and higher in Pi when compared to CDC Bronco. The total P concentration was similar in lpa genotypes and CDC Bronco throughout the seed development. The action of myo-inositol phosphate synthase (MIPS) (EC 5.5.1.4) is the first and rate-limiting step in the phytic acid biosynthesis pathway. Aiming at understanding the genetic basis of the lpa mutation in the pea, a 1530 bp open reading frame of MIPS was amplified from CDC Bronco and the lpa genotypes. Sequencing results showed no difference in coding sequence in MIPS between CDC Bronco and lpa genotypes. Transcription levels of MIPS were relatively lower at 49 days after flowering (DAF) than at 14 DAF for CDC Bronco and lpa lines. This study elucidated the rate and accumulation of phosphorus compounds in lpa genotypes. The data also demonstrated that mutation in MIPS was not responsible for the lpa trait in these pea lines.
Collapse
Affiliation(s)
- Arun S K Shunmugam
- Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
| | - Cheryl Bock
- National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
| | - Gene C Arganosa
- Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
| | - Fawzy Georges
- National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
| | - Gordon R Gray
- Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
| | - Thomas D Warkentin
- Crop Development Centre, Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
| |
Collapse
|
48
|
Li WX, Zhao HJ, Pang WQ, Cui HR, Poirier Y, Shu QY. Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice. Transgenic Res 2014; 23:585-99. [PMID: 24648215 DOI: 10.1007/s11248-014-9792-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2013] [Accepted: 03/10/2014] [Indexed: 11/29/2022]
Abstract
Phytic acid (PA) is poorly digested by humans and monogastric animals and negatively affects human/animal nutrition and the environment. Rice mutants with reduced PA content have been developed but are often associated with reduced seed weight and viability, lacking breeding value. In the present study, a new approach was explored to reduce seed PA while attaining competitive yield. The OsMRP5 gene, of which mutations are known to reduce seed PA as well as seed yield and viability, was down-regulated specifically in rice seeds by using an artificial microRNA driven by the rice seed specific promoter Ole18. Seed PA contents were reduced by 35.8-71.9% in brown rice grains of transgenic plants compared to their respective null plants (non-transgenic plants derived from the same event). No consistent significant differences of plant height or number of tillers per plant were observed, but significantly lower seed weights (up to 17.8% reduction) were detected in all transgenic lines compared to null plants, accompanied by reductions of seed germination and seedling emergence. It was observed that the silencing of the OsMRP5 gene increased the inorganic P (Pi) levels (up to 7.5 times) in amounts more than the reduction of PA-P in brown rice. This indicates a reduction in P content in other cellular compounds, such as lipids and nucleic acids, which may affect overall seed development. Put together, the present study demonstrated that seed specific silencing of OsMRP5 could significantly reduce the PA content and increase Pi levels in seeds; however, it also significantly lowers seed weight in rice. Discussions were made regarding future directions towards producing agronomically competitive and nutritionally valuable low PA rice.
Collapse
Affiliation(s)
- Wen-Xu Li
- State Key Laboratory of Rice Biology and Key Laboratory of Nuclear-Agricultural Sciences of the Ministry of Agriculture and Zhejiang Province, Institute of Nuclear Agricultural Sciences, Zhejiang University, Hangzhou, 310029, China
| | | | | | | | | | | |
Collapse
|
49
|
Akond M, Liu S, Kantartzi SK, Meksem K, Bellaloui N, Lightfoot DA, Yuan J, Wang D, Kassem MA. Quantitative trait loci for seed isoflavone contents in 'MD96-5722' by 'Spencer' recombinant inbred lines of soybean. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:1464-1468. [PMID: 24499298 DOI: 10.4236/fns.2015.611100] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Isoflavones from soybeans [ Glycine max (L.) Merr.] have a significant impact on human health to reduce the risk of several major diseases. Breeding soybean for high isoflavone content in the seed is possible through marker-assisted selection (MAS) which can be based on quantitative trait loci (QTL). The objective of this study was to identify QTL controlling isoflavone content in a set of 'MD96-5722' by 'Spencer' recombinant inbred line (RIL) populations of soybean. Wide variations were found for seed concentrations of daidzein, glycitein, genistein, and total isoflavones among the RIL populations. Three QTL were identified on three different linkage groups (LG) represented by three different chromosomes (Chr). One QTL that controlled daidzein content was identified on LG A1 (Chr 5), and two QTL that underlay glycitein content were identified on LG K (Chr 9) and LG B2 (Chr 14). Identified QTL could be functional in developing soybean with preferable isoflavone concentrations in the seeds through MAS.
Collapse
Affiliation(s)
- Masum Akond
- Plant Genomics and Biotechnology Laboratory, Department of Biological Sciences, Fayetteville State University , Fayetteville, North Carolina 28301-4298, United States
| | | | | | | | | | | | | | | | | |
Collapse
|
50
|
|