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Chen T, Hayes M, Liu Z, Isenegger D, Mason J, Spangenberg G. Modified fructan accumulation through overexpression of wheat fructan biosynthesis pathway fusion genes Ta1SST:Ta6SFT. BMC PLANT BIOLOGY 2024; 24:352. [PMID: 38689209 PMCID: PMC11059666 DOI: 10.1186/s12870-024-05049-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 04/19/2024] [Indexed: 05/02/2024]
Abstract
BACKGROUND Fructans are water-soluble carbohydrates that accumulate in wheat and are thought to contribute to a pool of stored carbon reserves used in grain filling and tolerance to abiotic stress. RESULTS In this study, transgenic wheat plants were engineered to overexpress a fusion of two fructan biosynthesis pathway genes, wheat sucrose: sucrose 1-fructosyltransferase (Ta1SST) and wheat sucrose: fructan 6-fructosyltransferase (Ta6SFT), regulated by a wheat ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (TaRbcS) gene promoter. We have shown that T4 generation transgene-homozygous single-copy events accumulated more fructan polymers in leaf, stem and grain when compared in the same tissues from transgene null lines. Under water-deficit (WD) conditions, transgenic wheat plants showed an increased accumulation of fructan polymers with a high degree of polymerisation (DP) when compared to non-transgenic plants. In wheat grain of a transgenic event, increased deposition of particular fructan polymers such as, DP4 was observed. CONCLUSIONS This study demonstrated that the tissue-regulated expression of a gene fusion between Ta1SST and Ta6SFT resulted in modified fructan accumulation in transgenic wheat plants and was influenced by water-deficit stress conditions.
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Affiliation(s)
- Tong Chen
- Agriculture Victoria, Agribio, Bundoora, VIC, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
| | - Matthew Hayes
- Agriculture Victoria, Agribio, Bundoora, VIC, Australia
| | - Zhiqian Liu
- Agriculture Victoria, Agribio, Bundoora, VIC, Australia
| | | | - John Mason
- Agriculture Victoria, Agribio, Bundoora, VIC, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
| | - German Spangenberg
- Agriculture Victoria, Agribio, Bundoora, VIC, Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
- Present Address: Qingdao Agricultural University, College of Grassland Science, N0. 700 Changcheng Road, Chengyang District, Qingdao, Shandong Province, 266109, P.R. China
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2
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Li L, Li Y, Ding G. Response mechanism of carbon metabolism of Pinus massoniana to gradient high temperature and drought stress. BMC Genomics 2024; 25:166. [PMID: 38347506 PMCID: PMC10860282 DOI: 10.1186/s12864-024-10054-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 01/25/2024] [Indexed: 02/15/2024] Open
Abstract
BACKGROUND The carbon metabolism pathway is of paramount importance for the growth and development of plants, exerting a pivotal regulatory role in stress responses. The exacerbation of drought impacts on the plant carbon cycle due to global warming necessitates comprehensive investigation into the response mechanisms of Masson Pine (Pinus massoniana Lamb.), an exemplary pioneer drought-tolerant tree, thereby establishing a foundation for predicting future forest ecosystem responses to climate change. RESULTS The seedlings of Masson Pine were utilized as experimental materials in this study, and the transcriptome, metabolome, and photosynthesis were assessed under varying temperatures and drought intensities. The findings demonstrated that the impact of high temperature and drought on the photosynthetic rate and transpiration rate of Masson Pine seedlings was more pronounced compared to individual stressors. The analysis of transcriptome data revealed that the carbon metabolic pathways of Masson Pine seedlings were significantly influenced by high temperature and drought co-stress, with a particular impact on genes involved in starch and sucrose metabolism. The metabolome analysis revealed that only trehalose and Galactose 1-phosphate were specifically associated with the starch and sucrose metabolic pathways. Furthermore, the trehalose metabolic heat map was constructed by integrating metabolome and transcriptome data, revealing a significant increase in trehalose levels across all three comparison groups. Additionally, the PmTPS1, PmTPS5, and PmTPPD genes were identified as key regulatory genes governing trehalose accumulation. CONCLUSIONS The combined effects of high temperature and drought on photosynthetic rate, transpiration rate, transcriptome, and metabolome were more pronounced than those induced by either high temperature or drought alone. Starch and sucrose metabolism emerged as the pivotal carbon metabolic pathways in response to high temperature and drought stress in Masson pine. Trehalose along with PmTPS1, PmTPS5, and PmTPPD genes played crucial roles as metabolites and key regulators within the starch and sucrose metabolism.
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Affiliation(s)
- Liangliang Li
- Forest Resources and Environment Research Center, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, 550001, Guiyang, China
- Institute of Mountain Resources of Guizhou Province, Guiyang, China, 550001
| | - Yan Li
- Forest Resources and Environment Research Center, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, 550001, Guiyang, China
| | - Guijie Ding
- Forest Resources and Environment Research Center, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, 550001, Guiyang, China.
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3
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Wang H, Yu H, Chai L, Lu T, Li Y, Jiang W, Li Q. Exogenous Sucrose Confers Low Light Tolerance in Tomato Plants by Increasing Carbon Partitioning from Stems to Leaves. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:20625-20642. [PMID: 38096491 DOI: 10.1021/acs.jafc.3c05985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2023]
Abstract
Low light (LL) stress adversely affects plant growth and productivity. The role of exogenous sucrose in enhancing plant LL tolerance was investigated by spraying sucrose on tomato (Solanum lycopersicum L.) leaves. This study employed physiological and molecular approaches to identify the underlying mechanisms. Exogenous sucrose activated sucrose hydrolysis-related enzyme activity and upregulated genes encoding sucrose and hexose transporters in mature leaves, decreasing endogenous sucrose levels and promoting sucrose unloading during LL. Stem-related genes associated with sucrose synthesis and transport were also upregulated, enhancing sucrose phloem loading. Furthermore, sucrose from stems activated sucrose unloading in sink leaves, forming a feed-forward loop to sustain sucrose flow during LL. This led to increased nonstructural carbohydrates (NSCs), improved energy metabolism, and enhanced protein synthesis in leaves, ultimately boosting photosynthesis and fruit yield after light recovery. These findings highlight how exogenous sucrose enhances LL tolerance in tomatoes by increasing the transport of NSCs from stems to leaves.
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Affiliation(s)
- Heng Wang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Hongjun Yu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Lin Chai
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Tao Lu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Yang Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Weijie Jiang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Qiang Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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4
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Wang W, Zhang Y, Liu C, Dong Y, Jiang X, Zhao C, Li G, Xu K, Huo Z. Label-Free Quantitative Proteomics Reveal the Mechanisms of Young Wheat ( Triticum aestivum L.) Ears' Response to Spring Freezing. Int J Mol Sci 2023; 24:15892. [PMID: 37958875 PMCID: PMC10648784 DOI: 10.3390/ijms242115892] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 11/15/2023] Open
Abstract
Late spring frost is an important meteorological factor threatening the safe production of winter wheat in China. The young ear is the most vulnerable organ of the wheat plant to spring frost. To gain an insight into the mechanisms underpinning young wheat ears' tolerance to freezing, we performed a comparative proteome analysis of wheat varieties Xumai33 (XM33, freezing-sensitive) and Jimai22 (JM22, freezing-tolerant) under normal and freezing conditions using label-free quantitative proteomic techniques during the anther connective tissue formation phase (ACFP). Under freezing stress, 392 and 103 differently expressed proteins (DEPs) were identified in the young ears of XM33 and JM22, respectively, and among these, 30 proteins were common in both varieties. A functional characterization analysis revealed that these DEPs were associated with antioxidant capacity, cell wall modification, protein folding, dehydration response, and plant-pathogen interactions. The young ears of JM22 showed significantly higher expression levels of antioxidant enzymes, heat shock proteins, and dehydrin under normal conditions compared to those of XM33, which might help to prepare the young ears of JM22 for freezing stress. Our results lead to new insights into understanding the mechanisms in young wheat ears' response to freezing stress and provide pivotal potential candidate proteins required for improving young wheat ears' tolerance to spring frost.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Zhongyang Huo
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Agricultural College, Yangzhou University, No. 88 Daxue South Road, Yangzhou 225009, China; (W.W.); (G.L.); (K.X.)
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Elakhdar A, El-Naggar AA, Kubo T, Kumamaru T. Genome-wide transcriptomic and functional analyses provide new insights into the response of spring barley to drought stress. PHYSIOLOGIA PLANTARUM 2023; 175:e14089. [PMID: 38148212 DOI: 10.1111/ppl.14089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 09/22/2023] [Accepted: 10/27/2023] [Indexed: 12/28/2023]
Abstract
Drought is a major abiotic stress that impairs the physiology and development of plants, ultimately leading to crop yield losses. Drought tolerance is a complex quantitative trait influenced by multiple genes and metabolic pathways. However, molecular intricacies and subsequent morphological and physiological changes in response to drought stress remain elusive. Herein, we combined morpho-physiological and comparative RNA-sequencing analyses to identify core drought-induced marker genes and regulatory networks in the barley cultivar 'Giza134'. Based on field trials, drought-induced declines occurred in crop growth rate, relative water content, leaf area duration, flag leaf area, concentration of chlorophyll (Chl) a, b and a + b, net photosynthesis, and yield components. In contrast, the Chl a/b ratio, stoma resistance, and proline concentration increased significantly. RNA-sequence analysis identified a total of 2462 differentially expressed genes (DEGs), of which 1555 were up-regulated and 907 were down-regulated in response to water-deficit stress (WD). Comparative transcriptomics analysis highlighted three unique metabolic pathways (carbohydrate metabolism, iron ion binding, and oxidoreductase activity) as containing genes differentially expressed that could mitigate water stress. Our results identified several drought-induced marker genes belonging to diverse physiochemical functions like chlorophyll concentration, photosynthesis, light harvesting, gibberellin biosynthetic, iron homeostasis as well as Cis-regulatory elements. These candidate genes can be utilized to identify gene-associated markers to develop drought-resilient barley cultivars over a short period of time. Our results provide new insights into the understanding of water stress response mechanisms in barley.
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Affiliation(s)
- Ammar Elakhdar
- Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
- Field Crops Research Institute, Agricultural Research Center, Giza, Egypt
| | - Ahmed A El-Naggar
- Field Crops Research Institute, Agricultural Research Center, Giza, Egypt
| | - Takahiko Kubo
- Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
| | - Toshihiro Kumamaru
- Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
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Li H, Liu X, Zhang J, Chen L, Zhang M, Miao Y, Ma P, Hao M, Jiang B, Ning S, Huang L, Yuan Z, Chen X, Chen X, Liu D, Wan H, Zhang L. Identification of the Solid Stem Suppressor Gene Su-TdDof in Synthetic Hexaploid Wheat Syn-SAU-117. Int J Mol Sci 2023; 24:12845. [PMID: 37629026 PMCID: PMC10454891 DOI: 10.3390/ijms241612845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 08/12/2023] [Accepted: 08/14/2023] [Indexed: 08/27/2023] Open
Abstract
Lodging is one of the most important factors affecting the high and stable yield of wheat worldwide. Solid-stemmed wheat has higher stem strength and lodging resistance than hollow-stemmed wheat does. There are many solid-stemmed varieties, landraces, and old varieties of durum wheat. However, the transfer of solid stem genes from durum wheat is suppressed by a suppressor gene located on chromosome 3D in common wheat, and only hollow-stemmed lines have been created. However, synthetic hexaploid wheat can serve as a bridge for transferring solid stem genes from tetraploid wheat to common wheat. In this study, the F1, F2, and F2:3 generations of a cross between solid-stemmed Syn-SAU-119 and semisolid-stemmed Syn-SAU-117 were developed. A single dominant gene, which was tentatively designated Su-TdDof and suppresses stem solidity, was identified in synthetic hexaploid wheat Syn-SAU-117 by using genetic analysis. By using bulked segregant RNA-seq (BSR-seq) analysis, Su-TdDof was mapped to chromosome 7DS and flanked by markers KASP-669 and KASP-1055 within a 4.53 cM genetic interval corresponding to 3.86 Mb and 2.29 Mb physical regions in the Chinese Spring (IWGSC RefSeq v1.1) and Ae. tauschii (AL8/78 v4.0) genomes, respectively, in which three genes related to solid stem development were annotated. Su-TdDof differed from a previously reported solid stem suppressor gene based on its origin and position. Su-TdDof would provide a valuable example for research on the suppression phenomenon. The flanking markers developed in this study might be useful for screening Ae. tauschii accessions with no suppressor gene (Su-TdDof) to develop more synthetic hexaploid wheat lines for the breeding of lodging resistance in wheat and further cloning the suppressor gene Su-TdDof.
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Affiliation(s)
- Hui Li
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (H.L.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Xin Liu
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Junqing Zhang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Longyu Chen
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Minghu Zhang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Yongping Miao
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Pan Ma
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Ming Hao
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Bo Jiang
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Shunzong Ning
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Lin Huang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (H.L.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Zhongwei Yuan
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Xuejiao Chen
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Xue Chen
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Dengcai Liu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (H.L.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Hongshen Wan
- Key Laboratory of Wheat Biology and Genetic Improvement on Southwestern China (Ministry of Agriculture and Rural Affairs), Crop Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China
- Environment-Friendly Crop Germplasm Innovation and Genetic Improvement Key Laboratory of Sichuan Province, Chengdu 610066, China
| | - Lianquan Zhang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu 611130, China; (H.L.)
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China
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7
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Murchie EH, Reynolds M, Slafer GA, Foulkes MJ, Acevedo-Siaca L, McAusland L, Sharwood R, Griffiths S, Flavell RB, Gwyn J, Sawkins M, Carmo-Silva E. A 'wiring diagram' for source strength traits impacting wheat yield potential. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:72-90. [PMID: 36264277 PMCID: PMC9786870 DOI: 10.1093/jxb/erac415] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 10/18/2022] [Indexed: 05/06/2023]
Abstract
Source traits are currently of great interest for the enhancement of yield potential; for example, much effort is being expended to find ways of modifying photosynthesis. However, photosynthesis is but one component of crop regulation, so sink activities and the coordination of diverse processes throughout the crop must be considered in an integrated, systems approach. A set of 'wiring diagrams' has been devised as a visual tool to integrate the interactions of component processes at different stages of wheat development. They enable the roles of chloroplast, leaf, and whole-canopy processes to be seen in the context of sink development and crop growth as a whole. In this review, we dissect source traits both anatomically (foliar and non-foliar) and temporally (pre- and post-anthesis), and consider the evidence for their regulation at local and whole-plant/crop levels. We consider how the formation of a canopy creates challenges (self-occlusion) and opportunities (dynamic photosynthesis) for components of photosynthesis. Lastly, we discuss the regulation of source activity by feedback regulation. The review is written in the framework of the wiring diagrams which, as integrated descriptors of traits underpinning grain yield, are designed to provide a potential workspace for breeders and other crop scientists that, along with high-throughput and precision phenotyping data, genetics, and bioinformatics, will help build future dynamic models of trait and gene interactions to achieve yield gains in wheat and other field crops.
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Affiliation(s)
| | - Matthew Reynolds
- International Maize and Wheat Improvement Center (CIMMYT), Km. 45, Carretera Mexico-Veracruz, El Batan, Texcoco, Mexico
| | - Gustavo A Slafer
- Department of Crop and Forest Sciences, University of Lleida–AGROTECNIO-CERCA Center, Av. R. Roure 191, 25198 Lleida, Spain
- ICREA (Catalonian Institution for Research and Advanced Studies), Barcelona, Spain
| | - M John Foulkes
- Division of Plant and Crop Science, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Liana Acevedo-Siaca
- International Maize and Wheat Improvement Center (CIMMYT), Km. 45, Carretera Mexico-Veracruz, El Batan, Texcoco, Mexico
| | - Lorna McAusland
- Division of Plant and Crop Science, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Robert Sharwood
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond NSW 2753, Australia
| | - Simon Griffiths
- John Innes Centre, Norwich Research Park, Colney Ln, Norwich NR4 7UH, UK
| | - Richard B Flavell
- International Wheat Yield Partnership, 1500 Research Parkway, College Station, TX 77843, USA
| | - Jeff Gwyn
- International Wheat Yield Partnership, 1500 Research Parkway, College Station, TX 77843, USA
| | - Mark Sawkins
- International Wheat Yield Partnership, 1500 Research Parkway, College Station, TX 77843, USA
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Mahalingam R, Duhan N, Kaundal R, Smertenko A, Nazarov T, Bregitzer P. Heat and drought induced transcriptomic changes in barley varieties with contrasting stress response phenotypes. FRONTIERS IN PLANT SCIENCE 2022; 13:1066421. [PMID: 36570886 PMCID: PMC9772561 DOI: 10.3389/fpls.2022.1066421] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 10/28/2022] [Indexed: 06/01/2023]
Abstract
Drought and heat stress substantially impact plant growth and productivity. When subjected to drought or heat stress, plants exhibit reduction in growth resulting in yield losses. The occurrence of these two stresses together intensifies their negative effects. Unraveling the molecular changes in response to combined abiotic stress is essential to breed climate-resilient crops. In this study, transcriptome profiles were compared between stress-tolerant (Otis), and stress-sensitive (Golden Promise) barley genotypes subjected to drought, heat, and combined heat and drought stress for five days during heading stage. The major differences that emerged from the transcriptome analysis were the overall number of differentially expressed genes was relatively higher in Golden Promise (GP) compared to Otis. The differential expression of more than 900 transcription factors in GP and Otis may aid this transcriptional reprogramming in response to abiotic stress. Secondly, combined heat and water deficit stress results in a unique and massive transcriptomic response that cannot be predicted from individual stress responses. Enrichment analyses of gene ontology terms revealed unique and stress type-specific adjustments of gene expression. Weighted Gene Co-expression Network Analysis identified genes associated with RNA metabolism and Hsp70 chaperone components as hub genes that can be useful for engineering tolerance to multiple abiotic stresses. Comparison of the transcriptomes of unstressed Otis and GP plants identified several genes associated with biosynthesis of antioxidants and osmolytes were higher in the former that maybe providing innate tolerance capabilities to effectively combat hostile conditions. Lines with different repertoire of innate tolerance mechanisms can be effectively leveraged in breeding programs for developing climate-resilient barley varieties with superior end-use traits.
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Affiliation(s)
| | - Naveen Duhan
- Department of Plant, Soils and Climate, Utah State University, Logan, UT, United States
| | - Rakesh Kaundal
- Department of Plant, Soils and Climate, Utah State University, Logan, UT, United States
| | - Andrei Smertenko
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Taras Nazarov
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Phil Bregitzer
- National Small Grains Germplasm Research Facility, USDA-ARS, Aberdeen, ID, United States
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9
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Gaur A, Jindal Y, Singh V, Tiwari R, Kumar D, Kaushik D, Singh J, Narwal S, Jaiswal S, Iquebal MA, Angadi UB, Singh G, Rai A, Singh GP, Sheoran S. GWAS to Identify Novel QTNs for WSCs Accumulation in Wheat Peduncle Under Different Water Regimes. FRONTIERS IN PLANT SCIENCE 2022; 13:825687. [PMID: 35310635 PMCID: PMC8928439 DOI: 10.3389/fpls.2022.825687] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 01/27/2022] [Indexed: 05/27/2023]
Abstract
Water-soluble carbohydrates (WSCs) play a vital role in water stress avoidance and buffering wheat grain yield. However, the genetic architecture of stem WSCs' accumulation is partially understood, and few candidate genes are known. This study utilizes the compressed mixed linear model-based genome wide association study (GWAS) and heuristic post GWAS analyses to identify causative quantitative trait nucleotides (QTNs) and candidate genes for stem WSCs' content at 15 days after anthesis under different water regimes (irrigated, rainfed, and drought). Glucose, fructose, sucrose, fructans, total non-structural carbohydrates (the sum of individual sugars), total WSCs (anthrone based) quantified in the peduncle of 301 bread wheat genotypes under multiple environments (E01-E08) pertaining different water regimes, and 14,571 SNPs from "35K Axiom Wheat Breeders" Array were used for analysis. As a result, 570 significant nucleotide trait associations were identified on all chromosomes except for 4D, of which 163 were considered stable. A total of 112 quantitative trait nucleotide regions (QNRs) were identified of which 47 were presumable novel. QNRs qWSC-3B.2 and qWSC-7A.2 were identified as the hotspots. Post GWAS integration of multiple data resources prioritized 208 putative candidate genes delimited into 64 QNRs, which can be critical in understanding the genetic architecture of stem WSCs accumulation in wheat under optimum and water-stressed environments. At least 19 stable QTNs were found associated with 24 prioritized candidate genes. Clusters of fructans metabolic genes reported in the QNRs qWSC-4A.2 and qWSC-7A.2. These genes can be utilized to bring an optimum combination of various fructans metabolic genes to improve the accumulation and remobilization of stem WSCs and water stress tolerance. These results will further strengthen wheat breeding programs targeting sustainable wheat production under limited water conditions.
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Affiliation(s)
- Arpit Gaur
- Department of Genetics and Plant Breeding, CCS Haryana Agricultural University, Hisar, India
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Yogesh Jindal
- Department of Genetics and Plant Breeding, CCS Haryana Agricultural University, Hisar, India
| | - Vikram Singh
- Department of Genetics and Plant Breeding, CCS Haryana Agricultural University, Hisar, India
| | - Ratan Tiwari
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Dinesh Kumar
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
| | - Deepak Kaushik
- Department of Genetics and Plant Breeding, CCS Haryana Agricultural University, Hisar, India
| | - Jogendra Singh
- ICAR-Central Soil Salinity Research Institute, Karnal, India
| | - Sneh Narwal
- ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Sarika Jaiswal
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
| | - Mir Asif Iquebal
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
| | - Ulavapp B. Angadi
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
| | - Gyanendra Singh
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Anil Rai
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
| | | | - Sonia Sheoran
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
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10
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Chaparro-Encinas LA, Parra-Cota FI, Cruz-Mendívil A, Santoyo G, Peña-Cabriales JJ, Castro-Espinoza L, de Los Santos-Villalobos S. Transcriptional regulation of cell growth and reprogramming of systemic response in wheat (Triticum turgidum subsp. durum) seedlings by Bacillus paralicheniformis TRQ65. PLANTA 2022; 255:56. [PMID: 35106645 DOI: 10.1007/s00425-022-03837-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 01/23/2022] [Indexed: 06/14/2023]
Abstract
Bacillus paralicheniformis TRQ65 reprograms the gene expression patterns associated with systemic response to potentially facilitate its colonization and stimulate cell growth and plant biomass. Plant growth-promoting rhizobacteria (PGPR) carry out numerous mechanisms that enhance growth in seedlings, such as nutrient solubilization, phytohormone production, biocontrol activity, and regulation of induced systemic resistance (ISR) and acquired systemic resistance (ASR). Bacillus paralicheniformis TRQ65 is a biological and plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere. In this study, we performed a transcriptomic analysis of wheat seedlings inoculated with the native rhizobacterium Bacillus paralicheniformis TRQ65 (1 × 107 cells∙g -1 of soil) at early development stages (GS15). A morphometrical assay was carried out to confirm growth promotion and after the cultivation period, TRQ65 was re-isolated to define inoculum persistence. Inoculated seedlings showed a significant (P < 0.05) increase in shoot length (93.48%) and dry weight in both shoot (117.02%) and root (48.33%) tissues; also, the strain persisted in the soil at 1.4 × 107 UFC∙g-1 of soil. A total of 228 differentially expressed genes (DEGs) (FDR < 0.05 and |log2 fold change|≥ 1.3) were observed in response to TRQ65 inoculation, of which 185 were down-regulated and 43 were up-regulated. The transcriptional patterns were characterized by the regulation of multidimensional cell growth (ROS, Ca+2 channel, and NADPH oxidases activity), suppression of defense mechanism (PR proteins, PDFs, ROS, transcription factors), induction of central stimuli receptors (RALF, WAK, MAPK), carbohydrate metabolism (invertase activity) and phytohormone-related transport (ABCG transporter and AAAP). These results suggest that B. paralicheniformis TRQ65 is a promising bioinoculant agent for increasing wheat growth and development by reprogramming ISR and ASR simultaneously, suppressing defense mechanisms and inducing central stimuli response.
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Affiliation(s)
- Luis A Chaparro-Encinas
- Instituto Tecnológico de Sonora, 5 de febrero 818 Sur, C.P. 85000, Col. Centro, Ciudad Obregón, Sonora, México
- Universidad Autónoma Agraria Antonio Narro (UAAAN) Unidad Laguna, Periférico Raúl López Sánchez, Valle Verde, 27054, Torreón, Coahuila, México
| | - Fannie I Parra-Cota
- Campo Experimental Norman E. Borlaug-CIRNO. Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias (INIFAP), Norman E. Borlaug Km. 12, CP 85000, Valle del Yaqui, Ciudad Obregón, Sonora, México
| | - Abraham Cruz-Mendívil
- Cátedras CONACYT, Instituto Politécnico Nacional, Centro Interdisciplinario de Investigación Para el Desarrollo Integral Regional (CIIDIR) Unidad Sinaloa, Guasave, Sinaloa, México
| | - Gustavo Santoyo
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacán, México
| | - Juan J Peña-Cabriales
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional Campus Guanajuato, Irapuato Guanajuato, México
| | - Luciano Castro-Espinoza
- Instituto Tecnológico de Sonora, 5 de febrero 818 Sur, C.P. 85000, Col. Centro, Ciudad Obregón, Sonora, México
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11
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Cao P, Fan W, Li P, Hu Y. Genome-wide profiling of long noncoding RNAs involved in wheat spike development. BMC Genomics 2021; 22:493. [PMID: 34210256 PMCID: PMC8252277 DOI: 10.1186/s12864-021-07851-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 06/23/2021] [Indexed: 11/22/2022] Open
Abstract
BACKGROUND Long noncoding RNAs (lncRNAs) have been shown to play important roles in the regulation of plant growth and development. Recent transcriptomic analyses have revealed the gene expression profiling in wheat spike development, however, the possible regulatory roles of lncRNAs in wheat spike morphogenesis remain largely unclear. RESULTS Here, we analyzed the genome-wide profiling of lncRNAs during wheat spike development at six stages, and identified a total of 8,889 expressed lncRNAs, among which 2,753 were differentially expressed lncRNAs (DE lncRNAs) at various developmental stages. Three hundred fifteen differentially expressed cis- and trans-regulatory lncRNA-mRNA pairs comprised of 205 lncRNAs and 279 genes were predicted, which were found to be mainly involved in the stress responses, transcriptional and enzymatic regulations. Moreover, the 145 DE lncRNAs were predicted as putative precursors or target mimics of miRNAs. Finally, we identified the important lncRNAs that participate in spike development by potentially targeting stress response genes, TF genes or miRNAs. CONCLUSIONS This study outlines an overall view of lncRNAs and their possible regulatory networks during wheat spike development, which also provides an alternative resource for genetic manipulation of wheat spike architecture and thus yield.
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Affiliation(s)
- Pei Cao
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, 100093, Beijing, China
| | - Wenjuan Fan
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, 100093, Beijing, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Pengjia Li
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, 100093, Beijing, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Yuxin Hu
- Key Laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, 100093, Beijing, China.
- National Center for Plant Gene Research, 100093, Beijing, China.
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12
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Zhang Z, Huang J, Gao Y, Liu Y, Li J, Zhou X, Yao C, Wang Z, Sun Z, Zhang Y. Suppressed ABA signal transduction in the spike promotes sucrose use in the stem and reduces grain number in wheat under water stress. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:7241-7256. [PMID: 32822501 PMCID: PMC7906786 DOI: 10.1093/jxb/eraa380] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 08/17/2020] [Indexed: 05/06/2023]
Abstract
Water stress is a primary trigger for reducing grain number per spike in wheat during the reproductive period. However, under stress conditions, the responses of plant organs and the interactions between them at the molecular and physiological levels remain unclear. In this study, when water stress occurred at the young microspore stage, RNA-seq data indicated that the spike had 970 differentially expressed genes, while the stem, comprising the two internodes below the spike (TIS), had 382. Abscisic acid (ABA) signal transduction genes were down-regulated by water stress in both these tissues, although to a greater extent in the TIS than in the spike. A reduction in sucrose was observed, and was accompanied by increases in cell wall invertase (CWIN) and sucrose:sucrose 1-fructosyl-transferase (1-SST) activities. Hexose and fructan were increased in the TIS but decreased in the spike. ABA was increased in the spike and TIS, and showed significant positive correlation with CWIN and 1-SST activities in the TIS. Overall, our results suggest that water stress induces the conversion of sucrose to hexose by CWIN, and to fructan by 1-SST, due to increased down-regulation of ABA signal transduction related-genes in the TIS; this leads to deficient sucrose supply to the spike and a decrease in grain number.
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Affiliation(s)
- Zhen Zhang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Jing Huang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yanmei Gao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yang Liu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Jinpeng Li
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Xiaonan Zhou
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Chunsheng Yao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Zhimin Wang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- Engineering Technology Research Center for Agriculture in Low Plain Areas, Heibei Province, China
| | - Zhencai Sun
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- Engineering Technology Research Center for Agriculture in Low Plain Areas, Heibei Province, China
| | - Yinghua Zhang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- Engineering Technology Research Center for Agriculture in Low Plain Areas, Heibei Province, China
- Correspondence:
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13
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Mandel I, Farkasdi S, Varga G, Nagy ÁK. Comparative Evaluation of Two Hyaluronic Acid Gel Products for the Treatment of Interdental Papillary Defects. Acta Stomatol Croat 2020; 54:227-237. [PMID: 33132386 PMCID: PMC7586896 DOI: 10.15644/asc54/3/1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Objectives The aim was to investigate the efficacy of single injections of two different hyaluronic acid products, Flex Barrier and Revident, in reducing the size of black triangles to treat Nordland-Tarnow Class I and II recessions. Materials and Methods Forty adult patients were recruited with at least two upper and two lower interdental papilla defects in the front region between canine teeth. According to the Nordland-Tarnow classification of papillary defects, both Class I and Class II recessions were included in the investigation. Patients were randomly assigned to experimental groups to receive single injections of two different hyaluronic acid products, either Flex Barrier or Revident. The untreated sites served as controls. Photographs were taken before and immediately after the treatment, and again after one week and one month. To determine the size of the black triangles, Image J software was used. For statistical analysis, a mixed-design ANOVA was applied. Results Both Flex Barrier and Revident significantly decreased the size of the treated defects immediately after the treatment and also one week later (p<0.001). The beneficial effect of Revident lasted longer than Flex Barrier as it remained significant even after one month in Revident-treated patients, however, not in the Flex Barrier-treated group. Furthermore, Nordland-Tarnow Class I lesions generally showed a greater improvement than Class II lesions. Conclusion In this proof-of-concept, randomized clinical trial we have demonstrated the clinical applicability of both Flex Barrier and Revident, although Revident gave longer-lasting improvements than Flex Barrier. Further trials are needed to optimize multiple-application protocols for treating gingival black triangles.
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Affiliation(s)
- Iván Mandel
- - University of Pécs, Medical School, Department of Dentistry, Oral and Maxillofacial Surgery, Pécs, Hungary
| | - Sándor Farkasdi
- - Semmelweis University, Faculty of Dentistry, Department of Oral Biology, Budapest, Hungary
| | - Gábor Varga
- - Semmelweis University, Faculty of Dentistry, Department of Oral Biology, Budapest, Hungary
| | - Ákos Károly Nagy
- - University of Pécs, Medical School, Department of Dentistry, Oral and Maxillofacial Surgery, Pécs, Hungary
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Fu L, Wu J, Yang S, Jin Y, Liu J, Yang M, Rasheed A, Zhang Y, Xia X, Jing R, He Z, Xiao Y. Genome-wide association analysis of stem water-soluble carbohydrate content in bread wheat. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:2897-2914. [PMID: 32594265 DOI: 10.1007/s00122-020-03640-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 06/19/2020] [Indexed: 05/14/2023]
Abstract
GWAS identified 36 potentially new loci for wheat stem water-soluble carbohydrate (WSC) contents and 13 pleiotropic loci affecting WSC and thousand-kernel weight. Five KASP markers were developed and validated. Water-soluble carbohydrates (WSC) reserved in stems contribute significantly to grain yield (GY) in wheat. However, knowledge of the genetic architecture underlying stem WSC content (SWSCC) is limited. In the present study, 166 diverse wheat accessions from the Yellow and Huai Valleys Winter Wheat Zone of China and five other countries were grown in four well-watered environments. SWSCC at 10 days post-anthesis (10DPA), 20DPA and 30DPA, referred as WSC10, WSC20 and WSC30, respectively, and thousand-kernel weight (TKW) were assessed. Correlation analysis showed that TKW was significantly and positively correlated with WSC10 and WSC20. Genome-wide association study was performed on SWSCC and TKW with 373,106 markers from the wheat 660 K and 90 K SNP arrays. Totally, 62 stable loci were detected for SWSCC, with 36, 24 and 19 loci for WSC10, WSC20 and WSC30, respectively; among these, 36 are potentially new, 16 affected SWSCC at two or three time-points, and 13 showed pleiotropic effects on both SWSCC and TKW. Linear regression showed clear cumulative effects of favorable alleles for increasing SWSCC and TKW. Genetic gain analyses indicated that pyramiding favorable alleles of SWSCC had simultaneously improved TKW. Kompetitive allele-specific PCR markers for five pleiotropic loci associated with both SWSCC and TKW were developed and validated. This study provided a genome-wide landscape of the genetic architecture of SWSCC, gave a perspective for understanding the relationship between WSC and GY and explored the theoretical basis for co-improvement of WSC and GY. It also provided valuable loci and markers for future breeding.
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Affiliation(s)
- Luping Fu
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
| | - Jingchun Wu
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
| | - Shurong Yang
- College of Agronomy, Gansu Agricultural University, Lanzhou, 730000, Gansu, China
| | - Yirong Jin
- Dezhou Institute of Agricultural Sciences, Dezhou, 253000, Shandong, China
| | - Jindong Liu
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences (CAAS), Shenzhen, 518000, China
| | - Mengjiao Yang
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
| | - Awais Rasheed
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Yong Zhang
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
| | - Xianchun Xia
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
| | - Ruilian Jing
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China
| | - Zhonghu He
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China.
- International Maize and Wheat Improvement Center (CIMMYT) China Office, Beijing, 100081, China.
| | - Yonggui Xiao
- Institute of Crop Sciences, National Wheat Improvement Center, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100081, China.
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15
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Liu Y, Zhang P, Li M, Chang L, Cheng H, Chai S, Yang D. Dynamic responses of accumulation and remobilization of water soluble carbohydrates in wheat stem to drought stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 155:262-270. [PMID: 32784106 DOI: 10.1016/j.plaphy.2020.07.024] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 07/05/2020] [Accepted: 07/13/2020] [Indexed: 05/16/2023]
Abstract
Remobilization of stem water soluble carbohydrates (WSC) can supply crucial carbon resources for grain filling against drought stress. Here, spatiotemporal variations in post-anthesis WSC levels and compensatory effects for grain weight from different internodes of the main stem were investigated, when exposed two wheat genotypes with contrasting drought tolerance to drought-stressed and well-watered conditions. Analysis of variance revealed that stem WSC levels were predominantly affected by days after anthesis, water stress and their interactions. Compared with well-watered conditions, the peak time of WSC levels was curtailed by 7-14 days in drought-stressed plants. Drought stress highly promoted WSC levels (ca. 20-30%) in upper internodes during the early period of grain filling, but significantly reduced WSC levels (ca. 40-90%) in all internodes during the late period. The drought-tolerant genotype LJ196 was more superior in WSC partitioning than the drought-prone genotype XD18, due to its stronger capacity for stem WSC remobilization, especially for pre-anthesis reserves under drought stress. This was associated with a better grain filling and compensation to the loss of grain weight. The WSC levels induced by drought stress formed a high-to-low concentration gradient from the lower to the upper internodes. Presumably, it might favorably drive WSC flux from stem to developing kernels, indicative of higher WSC remobilization efficiency generally in lower internodes than in upper ones. These findings provide the well-understanding of the spatiotemporal pattern of post-anthesis WSC accumulation and remobilization along stem internodes and their roles in the wheat grain-filling process under drought stress.
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Affiliation(s)
- Yuan Liu
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; School of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Peipei Zhang
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China
| | - Mengfei Li
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; School of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Lei Chang
- School of Agronomy, Gansu Agricultural University, 730070, Lanzhou, Gansu, China
| | - Hongbo Cheng
- School of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Shouxi Chai
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; School of Agronomy, Gansu Agricultural University, 730070, Lanzhou, Gansu, China
| | - Delong Yang
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; School of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
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Shi P, Xu Z, Zhang S, Wang X, Ma X, Zheng J, Xing L, Zhang D, Ma J, Han M, Zhao C. Construction of a high-density SNP-based genetic map and identification of fruit-related QTLs and candidate genes in peach [Prunus persica (L.) Batsch]. BMC PLANT BIOLOGY 2020; 20:438. [PMID: 32967617 PMCID: PMC7510285 DOI: 10.1186/s12870-020-02557-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 07/19/2020] [Indexed: 05/16/2023]
Abstract
BACKGROUND High-density genetic mapping is a valuable tool for mapping loci that control specific traits for perennial fruit trees. Peach is an economically important fruit tree and a model Rosaceae species for genomic and genetic research. In peach, even though many molecular markers, genetic maps and QTL mappings have been reported, further research on the improvement of marker numbers, map densities, QTL accuracy and candidate gene identification is still warranted. RESULTS A high-density single nucleotide polymorphism (SNP)-based peach linkage map was constructed using specific locus amplified fragment sequencing (SLAF-seq). This genetic map consisted of 7998 SLAF markers, spanning 1098.79 cM with an average distance of 0.17 cM between adjacent markers. A total of 40 QTLs and 885 annotated candidate genes were detected for 10 fruit-related traits, including fruit weight (FW), fruit diameter (FD), percentage of red skin colour (PSC), eating quality (EQ), fruit flavour (FV), red in flesh (RF), red around pit (RP), adherence to pit (AP), fruit development period (FDP) and fruit fibre content (FFC). Eighteen QTLs for soluble solid content (SSC) were identified along LGs 1, 4, 5, and 6 in 2015 and 2016, and 540 genes were annotated in QTL intervals. Thirty-two QTLs for fruit acidity content (FA) were detected on LG1, and 2, 4, 5, 6, and 1232 candidate genes were identified. The expression profiles of 2 candidate genes for SSC and 4 for FA were analysed in parents and their offspring. CONCLUSIONS We constructed a high-density genetic map in peach based on SLAF-seq, which may contribute to the identification of important agronomic trait loci. Ninety QTLs for 12 fruit-related traits were identified, most of which overlapped with previous reports, and some new QTLs were obtained. A large number of candidate genes for fruit-related traits were screened and identified. These results may improve our understanding of the genetic control of fruit quality traits and provide useful information in marker-assisted selection for fruit quality in peach breeding programmes.
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Affiliation(s)
- Pei Shi
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Ze Xu
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Shaoyu Zhang
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Xianju Wang
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Xiaofei Ma
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Jicheng Zheng
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Libo Xing
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Dong Zhang
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Juanjuan Ma
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Mingyu Han
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Caiping Zhao
- College of horticulture, Northwest A&F University, Yangling, 712100 Shaanxi China
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Huang X, Wang C, Hou J, Du C, Liu S, Kang J, Lu H, Xie Y, Guo T, Ma D. Coordination of carbon and nitrogen accumulation and translocation of winter wheat plant to improve grain yield and processing quality. Sci Rep 2020; 10:10340. [PMID: 32587292 PMCID: PMC7316831 DOI: 10.1038/s41598-020-67343-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 06/02/2020] [Indexed: 11/09/2022] Open
Abstract
The objective of this work was to characterize the accumulation of carbon (C) and nitrogen (N), and the translocation of wheat (Triticum aestivum L.) cultivars to achieve both high-quality and high-yield. Twenty-four wheat cultivars, including 12 cultivars containing high-quality gluten subunit 5 + 10 at Glu-D1, and 12 cultivars with no Glu-D1 5 + 10, were planted at Yuanyang and Xuchang in Henan Province, during 2016-2017, and 2017-2018 cropping seasons. Wheat cultivars containing Glu-D1 5 + 10 had an advantage in grain quality traits. Significant difference (P < 0.05) was observed for grain protein concentration (GPC) between 5 + 10 group and no 5 + 10 group. Grain yield (GY) was significantly correlated with kernel number (KN) (r = 0.778, P < 0.01), thousand-kernel weight (TKW) (r = 0.559, P < 0.01), dry matter accumulation at post-anthesis (r = 0.443, P < 0.05), and stem water-soluble carbohydrate (WSC) accumulation (r = 0.487, P < 0.05) and translocation amount (r = 0.490, P < 0.05). GPC, dough stability time (DST) and nitrogen agronomic efficiency (NAE) were significantly correlated with nitrogen accumulation (NAA) at maturity stage (r = 0.524, = 0.404, = 0.418, P < 0.01, < 0.05, < 0.05, respectively), and nitrogen translocation amount (r = 0.512, = 0.471, = 0.405, P < 0.05, < 0.05, < 0.05, respectively). These results suggest that good-quality, high-yield, and high-efficiency could achieve through the selection of high-quality wheat cultivars and coordination of C and N accumulation and translocation. High-quality gluten subunit gene Glu-D1 5 + 10 and stem WSC could be used as a selection index for breeding and production of high-quality and high-yield wheat.
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Affiliation(s)
- Xin Huang
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Chenyang Wang
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
- The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Junfeng Hou
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Chenyang Du
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Sujun Liu
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Juan Kang
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Hongfang Lu
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Yingxin Xie
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Tiancai Guo
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China
| | - Dongyun Ma
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou, 450046, China.
- The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, 450046, China.
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Zhang P, Liu Y, Li M, Ma J, Wang C, Su J, Yang D. Abscisic acid associated with key enzymes and genes involving in dynamic flux of water soluble carbohydrates in wheat peduncle under terminal drought stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 151:719-728. [PMID: 32353677 DOI: 10.1016/j.plaphy.2020.04.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 04/12/2020] [Accepted: 04/13/2020] [Indexed: 06/11/2023]
Abstract
Remobilization of stem water soluble carbohydrates (WSC) can supply crucial carbon resources for grain filling under drought stress, while the regulatory metabolism associated with abscisic acid (ABA) is still limited. Two cultivars, LJ196 (drought-tolerant) and XD18 (drought-prone), were pot-grown under well-watered (WW) and drought-stressed (DS) conditions. Concentrations of WSC components and ABA, and fructan metabolizing enzymes and genes were investigated in peduncle after anthesis. When compared with those under the WW, LJ196 remained higher grain yield and grain-filling rate than XD18 under the DS. During the early period of grain filling (0-14 DAA), DS increased concentrations of total WSC and its components, but thereafter substantially reduced them. The gene expression levels and enzymatic activities of fructan 1-exohydrolases (1-FEH) and fructan 6-exohydrolases (6-FEH) showed similar trends, whereas those of fructan: fructan 1-fructosyltransferase (1-FFT), and sucrose: fructan 6-fructosyltransferase (6-SFT) were depressed and declined over the period of examination. LJ196 still showed higher levels of ABA and fructan metabolizing. The ABA concentration under the DS was positively and significantly correlated with total WSC and fructan concentration, and expression levels of these enzymes and genes as well, with more prominently with those of 6-FEH. Presumably, ABA could enhance fructan hydrolysis by strongly up-regulating the gene expression and enzymatic activity of 6-FEH to accelerate WSC remobilization. However, stem WSC induced by DS could be not fully remobilized to grains, due to its weaker correlation with grain-filling rate and finally indicating lower grain yield. The findings would provide useful information for wheat production under water-deficit environments.
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Affiliation(s)
- Peipei Zhang
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China
| | - Yuan Liu
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Mengfei Li
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Jingfu Ma
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Caixiang Wang
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Junji Su
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China
| | - Delong Yang
- Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, China; College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, Gansu, China.
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Molecular evolution and structural variations in nuclear encoded chloroplast localized heat shock protein 26 (sHSP26) from genetically diverse wheat species. Comput Biol Chem 2019; 83:107144. [PMID: 31751884 DOI: 10.1016/j.compbiolchem.2019.107144] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Revised: 07/01/2019] [Accepted: 10/05/2019] [Indexed: 11/20/2022]
Abstract
Heat shock proteins are an important class of molecular chaperones known to impart tolerance under high temperature stress. sHSP26, a member of small heat shock protein subfamily is specifically involved in protecting plant's photosynthetic machinery. The present study aimed at identifying and characterizing sequence and structural variations in sHSP26 from genetically diverse progenitor and non-progenitor species of wheat. In silico analysis identified three paralogous copies of TaHSP26 to reside on short arm of chromosome 4A while one homeologue each was localized on long arm of chromosome 4B and 4D of cultivated bread wheat. Wild DD-genome donor Aegilops tauschii carried an additional sHSP26 gene (AET4Gv20569400) which was absent in the cultivated DD genome of bread wheat. In vitro amplification of this novel gene in wild accessions of Ae. tauschii and synthetic hexaploid wheat but not in cultivated bread wheat validated this finding. Further, significant length polymorphism could be identified in exon1 from diverse sHSP26 sequences. Multiple sequence alignment of procured sequences revealed numerous sSNPs and nsSNPs. D3A, P125 L, Q242 K were designated as homeolog specific- while A49 G as non-progenitor specific amino acid replacements. A 9-bp indel in TmHSP26-1(GA) translated into a deletion of SPM amino acid segment in chloroplast specific conserved consensus region III. High degree of divergence in nucleotide sequence between cultivated and wild species appeared in the form of higher ω values (Ka/Ks >1) indicating positive selection during the course of evolution. Phylogenetic analysis elucidated ancestral relationships between wheat sHSP26 proteins and orthologous proteins across plant kingdom. Overall, data mining approach may be employed as an effective pre-breeding strategy to identify and mobilize novel stress responsive genes and distinct allelic variants from wider germplasm collections of wheat to enhance climate resilience of present day elite wheat cultivars.
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20
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Sallam A, Alqudah AM, Dawood MFA, Baenziger PS, Börner A. Drought Stress Tolerance in Wheat and Barley: Advances in Physiology, Breeding and Genetics Research. Int J Mol Sci 2019; 20:ijms20133137. [PMID: 31252573 DOI: 10.3390/ijms.20133137] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 06/11/2019] [Accepted: 06/18/2019] [Indexed: 05/26/2023] Open
Abstract
Climate change is a major threat to most of the agricultural crops grown in tropical and sub-tropical areas globally. Drought stress is one of the consequences of climate change that has a negative impact on crop growth and yield. In the past, many simulation models were proposed to predict climate change and drought occurrences, and it is extremely important to improve essential crops to meet the challenges of drought stress which limits crop productivity and production. Wheat and barley are among the most common and widely used crops due to their economic and social values. Many parts of the world depend on these two crops for food and feed, and both crops are vulnerable to drought stress. Improving drought stress tolerance is a very challenging task for wheat and barley researchers and more research is needed to better understand this stress. The progress made in understanding drought tolerance is due to advances in three main research areas: physiology, breeding, and genetic research. The physiology research focused on the physiological and biochemical metabolic pathways that plants use when exposed to drought stress. New wheat and barley genotypes having a high degree of drought tolerance are produced through breeding by making crosses from promising drought-tolerant genotypes and selecting among their progeny. Also, identifying genes contributing to drought tolerance is very important. Previous studies showed that drought tolerance is a polygenic trait and genetic constitution will help to dissect the gene network(s) controlling drought tolerance. This review explores the recent advances in these three research areas to improve drought tolerance in wheat and barley.
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Affiliation(s)
- Ahmed Sallam
- Department of Genetics, Faculty of Agriculture, Assiut University, 71526 Assiut, Egypt.
| | - Ahmad M Alqudah
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben D-06466 Stadt Seeland, Germany.
| | - Mona F A Dawood
- Department of Botany & Microbiology, Faculty of Science, Assiut University, 71516 Assiut, Egypt
| | - P Stephen Baenziger
- Department of Agronomy & Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Andreas Börner
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben D-06466 Stadt Seeland, Germany
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21
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Sallam A, Alqudah AM, Dawood MFA, Baenziger PS, Börner A. Drought Stress Tolerance in Wheat and Barley: Advances in Physiology, Breeding and Genetics Research. Int J Mol Sci 2019; 20:E3137. [PMID: 31252573 PMCID: PMC6651786 DOI: 10.3390/ijms20133137] [Citation(s) in RCA: 174] [Impact Index Per Article: 34.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 06/11/2019] [Accepted: 06/18/2019] [Indexed: 02/07/2023] Open
Abstract
Climate change is a major threat to most of the agricultural crops grown in tropical and sub-tropical areas globally. Drought stress is one of the consequences of climate change that has a negative impact on crop growth and yield. In the past, many simulation models were proposed to predict climate change and drought occurrences, and it is extremely important to improve essential crops to meet the challenges of drought stress which limits crop productivity and production. Wheat and barley are among the most common and widely used crops due to their economic and social values. Many parts of the world depend on these two crops for food and feed, and both crops are vulnerable to drought stress. Improving drought stress tolerance is a very challenging task for wheat and barley researchers and more research is needed to better understand this stress. The progress made in understanding drought tolerance is due to advances in three main research areas: physiology, breeding, and genetic research. The physiology research focused on the physiological and biochemical metabolic pathways that plants use when exposed to drought stress. New wheat and barley genotypes having a high degree of drought tolerance are produced through breeding by making crosses from promising drought-tolerant genotypes and selecting among their progeny. Also, identifying genes contributing to drought tolerance is very important. Previous studies showed that drought tolerance is a polygenic trait and genetic constitution will help to dissect the gene network(s) controlling drought tolerance. This review explores the recent advances in these three research areas to improve drought tolerance in wheat and barley.
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Affiliation(s)
- Ahmed Sallam
- Department of Genetics, Faculty of Agriculture, Assiut University, 71526 Assiut, Egypt.
| | - Ahmad M Alqudah
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben D-06466 Stadt Seeland, Germany.
| | - Mona F A Dawood
- Department of Botany & Microbiology, Faculty of Science, Assiut University, 71516 Assiut, Egypt
| | - P Stephen Baenziger
- Department of Agronomy & Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68583, USA
| | - Andreas Börner
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben D-06466 Stadt Seeland, Germany
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Li M, He X, Hao D, Wu J, Zhao J, Yang Q, Chen X. 6-SFT, a Protein from Leymus mollis, Positively Regulates Salinity Tolerance and Enhances Fructan Levels in Arabidopsis thaliana. Int J Mol Sci 2019; 20:E2691. [PMID: 31159261 PMCID: PMC6600527 DOI: 10.3390/ijms20112691] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2019] [Revised: 05/16/2019] [Accepted: 05/28/2019] [Indexed: 11/26/2022] Open
Abstract
Fructans play vital roles in abiotic stress tolerance in plants. In this study, we isolated the sucrose:6-fructosyltransferase gene, which is involved in the synthesis of fructans, from Leymus mollis by rapid amplification of cDNA ends. The Lm-6-SFT gene was introduced into Arabidopsis thaliana cv. Columbia by Agrobacterium-mediated transformation. The transgenic plants were evaluated under salt stress conditions. The results showed that the expression of Lm-6-SFT was significantly induced by light, abscisic acid (ABA), salicylic acid (SA), and salt treatment in L. mollis plants. Overexpression of Lm-6-SFT in Arabidopsis promoted seed germination and primary root growth during the early vegetative growth stage under salt stress. We also found that the transgenic plants expressing Lm-6-SFT had increased proline and fructan levels. β-Glucuronidase staining and promoter analysis indicated that the promoter of Lm-6-SFT was regulated by light, ABA, and salt stress. Quantitative PCR suggested that overexpression of Lm-6-SFT could improve salt tolerance by interacting with the expression of some salt stress tolerance genes. Thus, we demonstrated that the Lm-6-SFT gene is a candidate gene that potentially confers salt stress tolerance to plants. Our study will aid the elucidation of the regulatory mechanism of 6-SFT genes in herb plants.
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Affiliation(s)
- Mao Li
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
| | - Xiaolan He
- College of Environment and Life Science, Kaili University, Kaili 556011, GuiZhou, China.
| | - Dongdong Hao
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
| | - Jun Wu
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
| | - Jixin Zhao
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
| | - Qunhui Yang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
| | - Xinhong Chen
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, China.
- Shaanxi Key Laboratory of Genetic Engineering for Plant Breeding, China.
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23
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Lv R, Han L, Xiao B, Xiao C, Yang Z, Wang H, Wang H, Liu B, Yang C. An extracted tetraploid wheat harbouring the BBAA component of common wheat shows anomalous shikimate and sucrose metabolism. BMC PLANT BIOLOGY 2019; 19:188. [PMID: 31064324 PMCID: PMC6505309 DOI: 10.1186/s12870-019-1796-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 04/23/2019] [Indexed: 05/16/2023]
Abstract
BACKGROUND The BBAA subgenomes of hexaploid common wheat are structurally intact, which makes it possible to extract the BBAA subgenomes to constitute a novel plant type, namely, extracted tetraploid wheat (ETW). ETW displays multiple abnormal phenotypes such as massively reduced biomass and abnormal spike development, compared to extant tetraploid wheat with a BBAA genome. The genetic, biochemical and physiological basis underlying the phenotypic abnormality of ETW remains unknown. RESULTS To explore the biochemical basis of these phenotypic abnormalities, we analysed the metabolomic and proteomic profiles and quantified 46 physiological traits of ETW in comparison with its common wheat donor (genome BBAADD), and a durum tetraploid wheat cultivar (genome BBAA). Among these three types of wheat, ETW showed a saliently different pattern of nutrient accumulation and seed quality, markedly lower concentrations of many metabolites involved in carbohydrate metabolism, and higher concentrations of many metabolites related to amino acids. Among the metabolites, changes in shikimate and sucrose were the most conspicuous. Higher levels of shikimate and lower levels of sucrose influence many metabolic processes including carbohydrate and amino acid metabolism, which may contribute to the phenotypic abnormalities. Gene expression assay showed downregulation of a shikimate degradation enzyme (5-enolpyruvylshikimate-3-phosphate synthase) coding gene and upregulation of several genes coding for the sucrose hydrolysis enzyme, which could explain the higher levels of shikimate and lower levels of sucrose, respectively. CONCLUSIONS Our results suggest that significant and irreversible biochemical changes have occurred in the BBAA subgenomes of common wheat during the course of its co-evolution with the DD subgenome at the hexaploid level.
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Affiliation(s)
- Ruili Lv
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Lei Han
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Binbin Xiao
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Chaoxia Xiao
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Zongze Yang
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Hao Wang
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Huan Wang
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Bao Liu
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
| | - Chunwu Yang
- Key laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, 130024 China
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24
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Climate change and abiotic stress mechanisms in plants. Emerg Top Life Sci 2019; 3:165-181. [DOI: 10.1042/etls20180105] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 04/05/2019] [Accepted: 04/09/2019] [Indexed: 12/20/2022]
Abstract
Abstract
Predicted global climatic change will perturb the productivity of our most valuable crops as well as detrimentally impact ecological fitness. The most important aspects of climate change with respect to these effects relate to water availability and heat stress. Over multiple decades, the plant research community has amassed a highly comprehensive understanding of the physiological mechanisms that facilitate the maintenance of productivity in response to drought, flooding, and heat stress. Consequently, the foundations necessary to begin the development of elite crop varieties that are primed for climate change are in place. To meet the food and fuel security concerns of a growing population, it is vital that biotechnological and breeding efforts to harness these mechanisms are accelerated in the coming decade. Despite this, those concerned with crop improvement must approach such efforts with caution and ensure that potentially harnessed mechanisms are viable under the context of a dynamically changing environment.
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25
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Kalaipandian S, Xue GP, Rae AL, Glassop D, Bonnett GD, McIntyre LC. Overexpression of TaCML20, a calmodulin-like gene, enhances water soluble carbohydrate accumulation and yield in wheat. PHYSIOLOGIA PLANTARUM 2019; 165:790-799. [PMID: 29900558 DOI: 10.1111/ppl.12786] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Revised: 05/23/2018] [Accepted: 06/09/2018] [Indexed: 05/10/2023]
Abstract
Calcium (Ca2+ ) is a universal messenger that mediates intracellular responses to extracellular stimuli in living organisms. Calmodulin (CaM) and calmodulin-like (CML) proteins are the important Ca2+ sensors in plants that decode Ca2+ -signatures to execute downstream intracellular level responses. Several studies indicate the interlinking of Ca2+ and sugar signaling in plants; however, no genes have been functionally characterized to provide molecular evidence. Our study found that expression of TaCML20 was significantly correlated with water soluble carbohydrate (WSC) concentrations in recombinant inbred lines in wheat. TaCML20 has four EF-hand motifs that may facilitate the binding of Ca2+ . To explore the role of CML20, we generated TaCML20 overexpressing transgenic lines in wheat. These lines accumulated higher WSC concentrations in the shoots, and we also found a significantly increased transcript level of sucrose:sucrose-1-fructosyltransferase (1-SST) in the internodes compared with the control plants. In addition, TaCML20 overexpressing plants showed significantly increased tillers per plant and also increased about 19% of grain weight per plant compared with control plants. The results also suggested a role for TaCML20 in drought stress, as its transcripts significantly increased in the shoots of wild-type plants under water deficit. These results uncovered the role of CML20 in determining multiple traits in wheat.
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Affiliation(s)
| | - Gang-Ping Xue
- CSIRO Agriculture and Food, St. Lucia, Queensland, 4067, Australia
| | - Anne L Rae
- CSIRO Agriculture and Food, St. Lucia, Queensland, 4067, Australia
| | - Donna Glassop
- CSIRO Agriculture and Food, St. Lucia, Queensland, 4067, Australia
| | - Graham D Bonnett
- CSIRO Agriculture and Food, St. Lucia, Queensland, 4067, Australia
| | - Lynne C McIntyre
- CSIRO Agriculture and Food, St. Lucia, Queensland, 4067, Australia
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Hou J, Huang X, Sun W, Du C, Wang C, Xie Y, Ma Y, Ma D. Accumulation of water-soluble carbohydrates and gene expression in wheat stems correlates with drought resistance. JOURNAL OF PLANT PHYSIOLOGY 2018; 231:182-191. [PMID: 30278314 DOI: 10.1016/j.jplph.2018.09.017] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Revised: 09/25/2018] [Accepted: 09/25/2018] [Indexed: 05/18/2023]
Abstract
In order to understand the effects of sugar metabolism on drought resistance in wheat, two wheat cultivars with different levels of drought resistance were used in this study. We investigated the accumulation pattern of water-soluble carbohydrates (WSC) and expression profiles of twelve fructan metabolism-related genes in peduncle (PED), penultimate (PEN), and lower internode (LOW) stem tissues under drought stress. LH7, a higher drought-resistance cultivar, contained a higher stem dry weight and higher content of WSC in PED, PEN, and LOW tissues, while XN979, a lower drought-resistance cultivar, contained lower values. The tissues from LOW internodes had the highest WSC content, while PED had the lowest. The mRNA levels of genes encoding fructan synthesis-related enzymes, sucrose: sucrose 1-fructosyltransferase (1-SST), sucrose: fructan 6-fructosyltransferase (6-SFT), and fructan: fructan 1- fructosyltransferase (1-FFT) showed higher expression levels at early time points following stress, whilst the genes encoding degradation-related enzymes, fructan exohydrolases (1-FEH), and invertase (INV), showed higher expression at a later time point. Compared with XN979, LH7 showed higher expression levels of genes encoding fructan synthesis-related enzymes at all growth stages, whilst the expression of 1-FEH-W3, 6-FEH, and INV3 were higher at a later stage; these expression levels would benefit fructan accumulation and remobilization at early and later stages, respectively. Drought stress induced most of fructan metabolism related genes expression level decreasing in LH7 PED, but enhancing in LH7 LOW part at early time points following stress. The results confirm that there are complex, coordinated expression patterns of fructan synthesis- and degradation-related genes in stems under drought stress. In summary, 1-SST-A2, 6-SFT, 1-FFT-A, 1-FEH-W3, 6-FEH, and INV3 play important roles in fructan accumulation. In addition, higher expression of genes related to fructan synthesis and degradation occurs during early and later stages of drought stress, respectively, enhancing the drought resistance of wheat cultivar LH7.
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Affiliation(s)
- Junfeng Hou
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China
| | - Xin Huang
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China
| | - Wan Sun
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China
| | - Chenyang Du
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China
| | - Chenyang Wang
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China; The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China
| | - Yingxin Xie
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China
| | - Ying Ma
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China
| | - Dongyun Ma
- College of Agronomy/National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China; The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China.
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27
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Pan J, Li Z, Wang Q, Garrell AK, Liu M, Guan Y, Zhou W, Liu W. Comparative proteomic investigation of drought responses in foxtail millet. BMC PLANT BIOLOGY 2018; 18:315. [PMID: 30497407 PMCID: PMC6267058 DOI: 10.1186/s12870-018-1533-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 11/19/2018] [Indexed: 05/17/2023]
Abstract
BACKGROUND Foxtail millet (Setaria italica L. P. Beauv) has been considered as a tractable model crop in recent years due to its short growing cycle, lower amount of repetitive DNA, inbreeding nature, small diploid genome, and outstanding abiotic stress-tolerance characteristics. With modern agriculture facing various adversities, it's urgent to dissect the mechanisms of how foxtail millet responds and adapts to drought and stress on the proteomic-level. RESULTS In this research, a total of 2474 differentially expressed proteins were identified by quantitative proteomic analysis after subjecting foxtail millet seedlings to drought conditions. 321 of these 2474 proteins exhibited significant expression changes, including 252 up-regulated proteins and 69 down-regulated proteins. The resulting proteins could then be divided into different categories, such as stress and defense responses, photosynthesis, carbon metabolism, ROS scavenging, protein synthesis, etc., according to Gene Ontology annotation. Proteins implicated in fatty acid and amino acid metabolism, polyamine biosynthesis, hormone metabolism, and cell wall modifications were also identified. These obtained differential proteins and their possible biological functions under drought stress all suggested that various physiological and metabolic processes might function cooperatively to configure a new dynamic homeostasis in organisms. The expression patterns of five drought-responsive proteins were further validated using western blot analysis. The qRT-PCR was also carried out to analyze the transcription levels of 21 differentially expressed proteins. The results showed large inconsistency in the variation between proteins and the corresponding mRNAs, which showed once again that post-transcriptional modification performs crucial roles in regulating gene expression. CONCLUSION The results offered a valuable inventory of proteins that may be involved in drought response and adaption, and provided a regulatory network of different metabolic pathways under stress stimulation. This study will illuminate the stress tolerance mechanisms of foxtail millet, and shed some light on crop germplasm breeding and innovation.
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Affiliation(s)
- Jiaowen Pan
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences; Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan, 250100 Shandong China
| | - Zhen Li
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences; Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan, 250100 Shandong China
| | - Qingguo Wang
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences; Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan, 250100 Shandong China
| | | | - Min Liu
- Shandong Agriculture and Engineering University, Jinan, 250100 Shandong China
| | - Yanan Guan
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, 250100 Shandong China
- College of Life Sciences, Shandong Normal University, Jinan, 250014 Shandong China
| | | | - Wei Liu
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences; Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan, 250100 Shandong China
- College of Life Sciences, Shandong Normal University, Jinan, 250014 Shandong China
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28
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Li G, Hu Q, Shi Y, Cui K, Nie L, Huang J, Peng S. Low Nitrogen Application Enhances Starch-Metabolizing Enzyme Activity and Improves Accumulation and Translocation of Non-structural Carbohydrates in Rice Stems. FRONTIERS IN PLANT SCIENCE 2018; 9:1128. [PMID: 30108604 PMCID: PMC6079283 DOI: 10.3389/fpls.2018.01128] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 07/12/2018] [Indexed: 05/21/2023]
Abstract
More than 4 billion inhabitants in Asia depend on rice for 35-60% of the calories consumed in their diets, but new rice cultivars frequently do not reach expected yields because of poor rice grain filling. Here, we quantified the activities of enzymes involved in starch metabolization in rice to investigate the mechanisms regulating the accumulation and translocation of stem non-structural carbohydrates (NSC) under different levels of nitrogen fertilizer application. A pot experiment was conducted using two rice cultivars, Liangyoupeijiu (LYPJ) and Shanyou63 (SY63), under high and low nitrogen applications. Compared with high nitrogen application (HN), low nitrogen application (LN) increased stem NSC concentration before the heading stage and NSC translocation during the grain filling stage; concomitantly, LN significantly shortened the active grain filling period and increased the grain filling rate in superior spikelets. Compared with the LYPJ cultivar, SY63 exhibited a higher grain weight, higher grain filling percentage, and higher stem NSC concentration before heading and greater NSC translocation after heading. During the period between panicle initiation and heading, the activities of adenosine diphosphate-glucose pyrophosphorylase (AGP), starch synthase (StS), and starch branching enzyme (SBE), all enzymes involved in starch synthesis, increased under the LN treatment and positively correlated with increases in stem NSC. During grain filling, the activities of enzymes involved in starch-to-sucrose conversion [α-amylase, β-amylase, and sucrose phosphate synthase (SPS)] increased under the LN treatment and positively correlated with stem NSC remobilization. Overall, the investigated enzymes exhibited higher activities in SY63 than in LYPJ. Our results suggest that low nitrogen increases the activities of AGP, StS, SBE, α-amylase, β-amylase, and SPS, leading to increased accumulation and remobilization of stem starch and NSC in SY63. We conclude that calculated reductions in nitrogen application and the choice of an appropriate cultivar may improve rice grain yields via enhanced stem NSC accumulation and translocation, thereby reducing the costs and increasing the sustainability of rice production.
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Affiliation(s)
- Guohui Li
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Qiuqian Hu
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yange Shi
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Kehui Cui
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
- Hubei Collaborative Innovation Center for Grain Industry, Jinzhou, China
| | - Lixiao Nie
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
- Hubei Collaborative Innovation Center for Grain Industry, Jinzhou, China
| | - Jianliang Huang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
- Hubei Collaborative Innovation Center for Grain Industry, Jinzhou, China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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Herzog M, Fukao T, Winkel A, Konnerup D, Lamichhane S, Alpuerto JB, Hasler-Sheetal H, Pedersen O. Physiology, gene expression, and metabolome of two wheat cultivars with contrasting submergence tolerance. PLANT, CELL & ENVIRONMENT 2018; 41:1632-1644. [PMID: 29664146 DOI: 10.1111/pce.13211] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 03/15/2018] [Accepted: 03/26/2018] [Indexed: 05/05/2023]
Abstract
Responses of wheat (Triticum aestivum) to complete submergence are not well understood as research has focused on waterlogging (soil flooding). The aim of this study was to characterize the responses of 2 wheat cultivars differing vastly in submergence tolerance to test if submergence tolerance was linked to shoot carbohydrate consumption as seen in rice. Eighteen-day-old wheat cultivars Frument (intolerant) and Jackson (tolerant) grown in soil were completely submerged for up to 19 days while assessing responses in physiology, gene expression, and shoot metabolome. Results revealed 50% mortality after 9.3 and 15.9 days of submergence in intolerant Frument and tolerant Jackson, respectively, and significantly higher growth in Jackson during recovery. Frument displayed faster leaf degradation as evident from leaf tissue porosity, chlorophylla , and metabolomic fingerprinting. Surprisingly, shoot soluble carbohydrates, starch, and individual sugars declined to similarly low levels in both cultivars by day 5, showing that cultivar Jackson tolerated longer periods of low shoot carbohydrate levels than Frument. Moreover, intolerant Frument showed higher levels of phytol and the lipid peroxidation marker malondialdehyde relative to tolerant Jackson. Consequently, we propose to further investigate the role of ethylene sensitivity and deprivation of reactive O2 species in submerged wheat.
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Affiliation(s)
- Max Herzog
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
| | - Takeshi Fukao
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 1880 Pratt Drive, Blacksburg, Virginia, 24061, USA
| | - Anders Winkel
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
| | - Dennis Konnerup
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
- Aarhus Institute of Advanced Studies (AIAS), Aarhus University, Høegh-Guldbergs Gade 6B, 8000 Aarhus C, Denmark
| | - Suman Lamichhane
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 1880 Pratt Drive, Blacksburg, Virginia, 24061, USA
| | - Jasper Benedict Alpuerto
- Department of Crop and Soil Environmental Sciences, Virginia Tech, 1880 Pratt Drive, Blacksburg, Virginia, 24061, USA
| | - Harald Hasler-Sheetal
- Nordcee, Department of Biology, University of Southern Denmark, Campusvej 55, Odense, 5230, Denmark
- VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, 5230, Denmark
| | - Ole Pedersen
- The Freshwater Biological Laboratory, Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark
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Mahdavi Mashaki K, Garg V, Nasrollahnezhad Ghomi AA, Kudapa H, Chitikineni A, Zaynali Nezhad K, Yamchi A, Soltanloo H, Varshney RK, Thudi M. RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS One 2018; 13:e0199774. [PMID: 29953498 PMCID: PMC6023194 DOI: 10.1371/journal.pone.0199774] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 06/13/2018] [Indexed: 11/24/2022] Open
Abstract
Drought is the most important constraint that effects chickpea production globally. RNA-Seq has great potential to dissect the molecular mechanisms of tolerance to environmental stresses. Transcriptome profiles in roots and shoots of two contrasting Iranian kabuli chickpea genotypes (Bivanij and Hashem) were investigated under water-limited conditions at early flowering stage using RNA-Seq approach. A total of 4,572 differentially expressed genes (DEGs) were identified. Of these, 261 and 169 drought stress responsive genes were identified in the shoots and the roots, respectively, and 17 genes were common in the shoots and the roots. Gene Ontology (GO) analysis revealed several sub-categories related to the stress, including response to stress, defense response and response to stimulus in the tolerant genotype Bivanij as compared to the sensitive genotype Hashem under drought stress. In addition, several Transcription factors (TFs) were identified in major metabolic pathways such as, ABA, proline and flavonoid biosynthesis. Furthermore, a number of the DEGs were observed in "QTL-hotspot" regions which were reported earlier in chickpea. Drought tolerance dissection in the genotypes revealed that the genes and the pathways involved in shoots of Bivanij were the most important factor to make a difference between the genotypes for drought tolerance. The identified TFs in the experiment, particularly those which were up-regulated in shoots of Bivanij during drought stress, were potential candidates for enhancing tolerance to drought.
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Affiliation(s)
- Keyvan Mahdavi Mashaki
- Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Vanika Garg
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | | | - Himabindu Kudapa
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Annapurna Chitikineni
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Khalil Zaynali Nezhad
- Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Ahad Yamchi
- Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Hasan Soltanloo
- Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Rajeev Kumar Varshney
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Mahendar Thudi
- Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
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Liu J, Zhang J, Wang J, Zhang J, Miao H, Jia C, Wang Z, Xu B, Jin Z. MuMADS1 and MaOFP1 regulate fruit quality in a tomato ovate mutant. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:989-1001. [PMID: 28944538 PMCID: PMC5902769 DOI: 10.1111/pbi.12843] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Revised: 09/11/2017] [Accepted: 09/20/2017] [Indexed: 05/11/2023]
Abstract
Fruit ripening and quality are common botanical phenomena that are closely linked and strictly regulated by transcription factors. It was previously discovered that a banana MADS-box protein named MuMADS1 interacted with an ovate family protein named MaOFP1 to regulate banana fruit ripening. To further investigate the role of MuMADS1 and MaOFP1 in the regulation of fruit quality, a combination of genetic transformation and transcriptional characterization was used. The results indicated that the co-expression of MuMADS1 and MaOFP1 in the ovate mutant could compensate for fruit shape and inferior qualities relating to fruit firmness, soluble solids and sugar content. The number of differentially expressed genes (DEGs) was 1395 in WT vs. ovate, with 883 up-regulated and 512 down-regulated genes, while the numbers of DEGs gradually decreased with the transformation of MuMADS1 and MaOFP1 into ovate. 'Starch and sucrose metabolism' constituted the primary metabolic pathway, and the gene numbers in this pathway were obviously different when MuMADS1 and MaOFP1 were integrated into ovate. A series of metabolic genes involved in cell wall biosynthesis were up-regulated in the WT vs. ovate, which probably resulted in the firmer texture and lower sugar contents in the ovate fruit. These results demonstrate that MuMADS1 and MaOFP1 are coregulators of fruit quality, facilitating the dissection of the molecular mechanisms underlying fruit quality formation.
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Affiliation(s)
- Juhua Liu
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Jing Zhang
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Jingyi Wang
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Jianbin Zhang
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Hongxia Miao
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Caihong Jia
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Zhuo Wang
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Biyu Xu
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
| | - Zhiqiang Jin
- Key Laboratory of Tropical Crop BiotechnologyMinistry of AgricultureInstitute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouChina
- Key Laboratory of Genetic Improvement of BananasHainan ProvinceHaikou Experimental StationChinese Academy of Tropical Agricultural SciencesHaikouChina
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Chen D, Chai S, McIntyre CL, Xue GP. Overexpression of a predominantly root-expressed NAC transcription factor in wheat roots enhances root length, biomass and drought tolerance. PLANT CELL REPORTS 2018; 37:225-237. [PMID: 29079898 DOI: 10.1007/s00299-017-2224-y] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2017] [Accepted: 10/05/2017] [Indexed: 05/10/2023]
Abstract
TaRNAC1 is a constitutively and predominantly root-expressed NAC transcription factor. TaRNAC1 overexpression in wheat roots confers increased root length, biomass and drought tolerance and improved grain yield under water limitation. A large and deep root system is an important trait for yield sustainability of dryland cereal crops in drought-prone environments. This study investigated the role of a predominantly root-expressed NAC transcription factor from wheat (TaRNAC1) in the root growth. Expression analysis showed that TaRNAC1 was a constitutively expressed gene with high level expression in the roots and was not drought-upregulated. Overexpression of TaRNAC1 in wheat using a predominantly root-expressed promoter resulted in increased root length and biomass observed at the early growth stage and a marked increase in the maturity root biomass with dry root weight of > 70% higher than that of the wild type plants. Analysis of some root growth-related genes revealed that the expression level of GA3-ox2, which encodes GIBBERELLIN 3-OXIDASE catalysing the conversion of inactive gibberellin (GA) to active GA, was elevated in the roots of transgenic wheat. TaRNAC1 overexpressing transgenic wheat showed more dehydration tolerance under polyethylene glycol (PEG) treatment and produced more aboveground biomass and grain under water-limited conditions than the wild type plants. These data suggest that TaRNAC1 may play a role in root growth and be used as a molecular tool for potential enlargement of root system in wheat.
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Affiliation(s)
- Dandan Chen
- College of Agronomy, Northwest Agriculture and Forestry University, Yangling, Shaanxi, 712100, People's Republic of China
- CSIRO Agriculture and Food, 306 Carmody Rd., St Lucia, QLD, 4067, Australia
| | - Shoucheng Chai
- College of Agronomy, Northwest Agriculture and Forestry University, Yangling, Shaanxi, 712100, People's Republic of China.
| | - C Lynne McIntyre
- CSIRO Agriculture and Food, 306 Carmody Rd., St Lucia, QLD, 4067, Australia
| | - Gang-Ping Xue
- CSIRO Agriculture and Food, 306 Carmody Rd., St Lucia, QLD, 4067, Australia.
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Li PF, Ma BL, Xiong YC, Zhang WY. Morphological and physiological responses of different wheat genotypes to chilling stress: a cue to explain yield loss. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2017; 97:4036-4045. [PMID: 28194804 DOI: 10.1002/jsfa.8271] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Revised: 12/07/2016] [Accepted: 02/02/2017] [Indexed: 06/06/2023]
Abstract
BACKGROUND The eco-physiological mechanism of wheat yield loss resulting from chilling stress is a fundamental scientific issue. However, previous studies have focused on hexaploid wheats, and few studies on the morphological and physiological plasticity of wheat plants. Six different wheat genotypes were tested under chilling stress to investigate the physio-morphological parameters as well as the loss of grain yield in growth chambers. RESULTS Chilling stress resulted in significant loss in grain yield in all genotypes. Under chilling stress, diploid wheats generated zero harvest, and tetraploid genotypes also suffered from a pronounced loss in grain yield, compared with the control group. In contrast, hexaploid genotypes acquired relatively high maintenance rate of grain yield among three species. CONCLUSIONS Diploid and tetraploid wheat genotypes maintained relatively large leaf area and high photosynthetic rates, but they were subjected to significant declines in vascular bundle number and productive tillers as a consequence of the inhibition by sink growth under chilling stress. The hexaploid wheats were found to have relatively low leaf area and photosynthetic rates. These genotypes also stored more soluble carbohydrates and exhibited stronger sink enhancement, ensuring the translocation and redistribution of assimilates. Our findings provided a new theoretical understanding of yield stabilization in the domestication process of wheat genotypes under chilling stress. © 2017 Her Majesty the Queen in Right of Canada. Journal of The Science of Food and Agriculture © 2017 Society of Chemical Industry.
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Affiliation(s)
- Pu-Fang Li
- Institute of Soil and Water Conservation, Northwest A & F University, Yangling, China
| | - Bao-Luo Ma
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada
| | - You-Cai Xiong
- Institute of Arid Agroecology, School of Life Sciences, Lanzhou University, Lanzhou, China
| | - Wen-Yuan Zhang
- Institute of Arid Agroecology, School of Life Sciences, Lanzhou University, Lanzhou, China
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Li G, Pan J, Cui K, Yuan M, Hu Q, Wang W, Mohapatra PK, Nie L, Huang J, Peng S. Limitation of Unloading in the Developing Grains Is a Possible Cause Responsible for Low Stem Non-structural Carbohydrate Translocation and Poor Grain Yield Formation in Rice through Verification of Recombinant Inbred Lines. FRONTIERS IN PLANT SCIENCE 2017; 8:1369. [PMID: 28848573 PMCID: PMC5550689 DOI: 10.3389/fpls.2017.01369] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2017] [Accepted: 07/21/2017] [Indexed: 05/19/2023]
Abstract
Remobilisation of non-structural carbohydrates (NSC) from leaves and stems and unloading into developing grains are essential for yield formation of rice. In present study, three recombinant inbred lines of rice, R91, R156 and R201 have been tested for source-flow-sink related attributes determining the nature of NSC accumulation and translocation at two nitrogen levels in the field. Compared to R91 and R156, R201 had lower grain filling percentage, harvest index, and grain yield. Meanwhile, R201 had significantly lower stem NSC translocation during grain filling stage. Grain filling percentage, harvest index, and grain yield showed the consistent trend with stem NSC translocation among the three lines. In comparison with R91 and R156, R201 had similarity in leaf area index, specific leaf weight, stem NSC concentration at heading, biomass, panicles m-2, spikelets per panicle, remobilization capability of assimilation in stems, sink capacity, sink activity, number and cross sectional area of small vascular bundles, greater number and cross sectional area of large vascular bundles, and higher SPAD, suggesting that source, flow, and sink were not the limiting factors for low stem NSC translocation and grain filling percentage of R201. However, R201 had significant higher stem and rachis NSC concentrations at maturity, which implied that unloading in the developing grains might result in low NSC translocation in R201. The results indicate that stem NSC translocation could be beneficial for enhancement of grain yield potential, and poor unloading into caryopsis may be the possible cause of low stem NSC translocation, poor grain filling and yield formation in R201.
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Affiliation(s)
- Guohui Li
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Junfeng Pan
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Kehui Cui
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
- Hubei Collaborative Innovation for Grain IndustryJinzhou, China
| | - Musong Yuan
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Qiuqian Hu
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Wencheng Wang
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | | | - Lixiao Nie
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
- Hubei Collaborative Innovation for Grain IndustryJinzhou, China
| | - Jianliang Huang
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
- Hubei Collaborative Innovation for Grain IndustryJinzhou, China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
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Wang GQ, Hao SS, Gao B, Chen MX, Liu YG, Yang JC, Ye NH, Zhang JH. Regulation of Gene Expression in the Remobilization of Carbon Reserves in Rice Stems During Grain Filling. PLANT & CELL PHYSIOLOGY 2017; 58:1391-1404. [PMID: 28575477 DOI: 10.1093/pcp/pcx072] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Accepted: 05/09/2017] [Indexed: 05/15/2023]
Abstract
Carbon reserves in rice straw (stem and sheath) before flowering contribute to a significant portion of grain filling. However, the molecular mechanism of carbon reserve remobilization from straw to grains remains unclear. In this study, super rice LYP9 and conventional rice 9311 showed different carbon reserve remobilization behaviors. The transcriptomic profiles of straws of LYP9 and 9311 were analyzed at three stages of grain filling. Among the differentially expressed genes (DGs), 5,733 genes were uniquely up- or down-regulated at 30 days after anthesis (DAA) between LYP9 and 9311 in comparison with 681 at 10 DAA and 495 at 20 DAA, suggesting that the gene expression profile of LYP9 was very different from that of 9311 at the late stage of grain filling. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and Gene Ontology (GO) classification of DGs both showed that the carbohydrate catabolic pathway, plant hormone signal transduction and photosynthesis pathway were enriched in DGs, suggesting their roles in carbon reserve remobilization, which explains to a certain extent the difference in non-structural carbohydrate content, photosynthesis and ABA content between the two cultivars during grain filling. Further comparative analysis and confirmation by quantitative real-time PCR and enzyme assays suggest that genes involved in trehalose synthesis (trehalose-phosphate phosphatase and trehalose 6-phosphate synthase/phosphatase), starch degradation (β-amylase) and sucrose synthesis (sucrose-phosphate synthase and sucrose synthase) were important for carbon reserve remobilization, whereas ABA content was determined by the counteraction of NCED1 and ABA8ox1 genes. The higher expression level of all these genes and ABA content in 9311 resulted in better efficiency of carbon reserve remobilization in 9311 than in LYP9.
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Affiliation(s)
- Guan-Qun Wang
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Hunan Agricultural University, Changsha, 410128, China
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Shuai-Shuai Hao
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Yangzhou University, Yangzhou, Jiangsu, China
| | - Bei Gao
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Mo-Xian Chen
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Ying-Gao Liu
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, Shandong, China
| | - Jian-Chang Yang
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Yangzhou University, Yangzhou, Jiangsu, China
| | - Neng-Hui Ye
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Hunan Agricultural University, Changsha, 410128, China
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
| | - Jian-Hua Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
- Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China
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Yáñez A, Tapia G, Guerra F, del Pozo A. Stem carbohydrate dynamics and expression of genes involved in fructan accumulation and remobilization during grain growth in wheat (Triticum aestivum L.) genotypes with contrasting tolerance to water stress. PLoS One 2017; 12:e0177667. [PMID: 28552955 PMCID: PMC5446126 DOI: 10.1371/journal.pone.0177667] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 05/01/2017] [Indexed: 11/18/2022] Open
Abstract
The genetic and physiological mechanisms underlying the relationship between water-soluble carbohydrates (WSC) and water stress tolerance are scarcely known. This study aimed to evaluate the main WSC in stems, and the expression of genes involved in fructan metabolism in wheat genotypes growing in a glasshouse with water stress (WS; 50% field capacity from heading) and full irrigation (FI; 100% field capacity). Eight wheat genotypes (five tolerant and three susceptible to water stress) were evaluated initially (experiment 1) and the two most contrasting genotypes in terms of WSC accumulation were evaluated in a subsequent experiment (experiment 2). Maximum accumulation of WSC occurred 10-20 days after anthesis. Under WS, the stress-tolerant genotype exhibited higher concentrations of WSC, glucose, fructose and fructan in the stems, compared to FI. In addition, the stress-tolerant genotype exhibited higher up-regulation of the fructan 1-fructosyltransferase B (1-FFTB) and fructan 1-exohydrolase w2 (1-FEHw2) genes, whereas the susceptible cultivar presented an up-regulation of the fructan 6-fructosyltransferase (6-SFT) and fructan 1-exohydrolase w3 (1-FEHw3) genes. Our results indicated clear differences in the pattern of WSC accumulation and the expression of genes regulating fructan metabolism between the tolerant and susceptible genotypes under WS.
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Affiliation(s)
- Alejandra Yáñez
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, PIEI Adaptación de la Agricultura al Cambio Climático (A2C2), Universidad de Talca, Talca, Chile
| | - Gerardo Tapia
- CRI-Quilamapu, Instituto de Investigaciones Agropecuarias, Chillán, Chile
| | - Fernando Guerra
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
| | - Alejandro del Pozo
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, PIEI Adaptación de la Agricultura al Cambio Climático (A2C2), Universidad de Talca, Talca, Chile
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Dong Y, Liu J, Zhang Y, Geng H, Rasheed A, Xiao Y, Cao S, Fu L, Yan J, Wen W, Zhang Y, Jing R, Xia X, He Z. Genome-Wide Association of Stem Water Soluble Carbohydrates in Bread Wheat. PLoS One 2016; 11:e0164293. [PMID: 27802269 PMCID: PMC5089554 DOI: 10.1371/journal.pone.0164293] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Accepted: 09/22/2016] [Indexed: 11/18/2022] Open
Abstract
Water soluble carbohydrates (WSC) in stems play an important role in buffering grain yield in wheat against biotic and abiotic stresses; however, knowledge of genes controlling WSC is very limited. We conducted a genome-wide association study (GWAS) using a high-density 90K SNP array to better understand the genetic basis underlying WSC, and to explore marker-based breeding approaches. WSC was evaluated in an association panel comprising 166 Chinese bread wheat cultivars planted in four environments. Fifty two marker-trait associations (MTAs) distributed across 23 loci were identified for phenotypic best linear unbiased estimates (BLUEs), and 11 MTAs were identified in two or more environments. Liner regression showed a clear dependence of WSC BLUE scores on numbers of favorable (increasing WSC content) and unfavorable alleles (decreasing WSC), indicating that genotypes with higher numbers of favorable or lower numbers of unfavorable alleles had higher WSC content. In silico analysis of flanking sequences of trait-associated SNPs revealed eight candidate genes related to WSC content grouped into two categories based on the type of encoding proteins, namely, defense response proteins and proteins triggered by environmental stresses. The identified SNPs and candidate genes related to WSC provide opportunities for breeding higher WSC wheat cultivars.
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Affiliation(s)
- Yan Dong
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jindong Liu
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yan Zhang
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Hongwei Geng
- College of Agronomy, Xinjiang Agricultural University, 311 Nongda East Road, Urumqi, Xinjiang, 830052, China
| | - Awais Rasheed
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
- International Maize and Wheat Improvement Center (CIMMYT) China Office, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yonggui Xiao
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Shuanghe Cao
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Luping Fu
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jun Yan
- Cotton Research Institute, Chinese Academy of Agricultural Sciences, Anyang, Henan, China
| | - Weie Wen
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
- College of Agronomy, Xinjiang Agricultural University, 311 Nongda East Road, Urumqi, Xinjiang, 830052, China
| | - Yong Zhang
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Ruilian Jing
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Xianchun Xia
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Zhonghu He
- Institute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China
- International Maize and Wheat Improvement Center (CIMMYT) China Office, Chinese Academy of Agricultural Sciences, Beijing, China
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Chen D, Richardson T, Chai S, Lynne McIntyre C, Rae AL, Xue GP. Drought-Up-Regulated TaNAC69-1 is a Transcriptional Repressor of TaSHY2 and TaIAA7, and Enhances Root Length and Biomass in Wheat. PLANT & CELL PHYSIOLOGY 2016; 57:2076-2090. [PMID: 27440550 DOI: 10.1093/pcp/pcw126] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Accepted: 07/09/2016] [Indexed: 05/03/2023]
Abstract
A well-known physiological adaptation process of plants encountering drying soil is to achieve water balance by reducing shoot growth and maintaining or promoting root elongation, but little is known about the molecular basis of this process. This study investigated the role of a drought-up-regulated Triticum aestivum NAC69-1 (TaNAC69-1) in the modulation of root growth in wheat. TaNAC69-1 was predominantly expressed in wheat roots at the early vegetative stage. Overexpression of TaNAC69-1 in wheat roots using OsRSP3 (essentially root-specific) and OsPIP2;3 (root-predominant) promoters resulted in enhanced primary seminal root length and a marked increase in maturity root biomass. Competitive growth analysis under water-limited conditions showed that OsRSP3 promoter-driven TaNAC69-1 transgenic lines produced 32% and 35% more above-ground biomass and grains than wild-type plants, respectively. TaNAC69-1 overexpression in the roots down-regulated the expression of TaSHY2 and TaIAA7, which are from the auxin/IAA (Aux/IAA) transcriptional repressor gene family and are the homologs of negative root growth regulators SHY2/IAA3 and IAA7 in Arabidopsis. The expression of TaSHY2 and TaIAA7 in roots was down-regulated by drought stress and up-regulated by cytokinin treatment, which inhibited root growth. DNA binding and transient expression analyses revealed that TaNAC69-1 bound to the promoters of TaSHY2 and TaIAA7, acted as a transcriptional repressor and repressed the expression of reporter genes driven by the TaSHY2 or TaIAA7 promoter. These data suggest that TaNAC69-1 is a transcriptional repressor of TaSHY2 and TaIAA7 homologous to Arabidopsis negative root growth regulators and is likely to be involved in promoting root elongation in drying soil.
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Affiliation(s)
- Dandan Chen
- College of Agronomy, Northwest Agriculture and Forestry University, Yangling, Shaanxi 712100, PR China
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, Qld 4067, Australia
| | - Terese Richardson
- CSIRO Agriculture, Clunies Ross Street, Canberra, ACT 2601, Australia
| | - Shoucheng Chai
- College of Agronomy, Northwest Agriculture and Forestry University, Yangling, Shaanxi 712100, PR China
| | - C Lynne McIntyre
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, Qld 4067, Australia
| | - Anne L Rae
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, Qld 4067, Australia
| | - Gang-Ping Xue
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, Qld 4067, Australia
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39
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Ghaffari MR, Shahinnia F, Usadel B, Junker B, Schreiber F, Sreenivasulu N, Hajirezaei MR. The Metabolic Signature of Biomass Formation in Barley. PLANT & CELL PHYSIOLOGY 2016; 57:1943-60. [PMID: 27388338 DOI: 10.1093/pcp/pcw117] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2016] [Accepted: 06/16/2016] [Indexed: 05/18/2023]
Abstract
The network analysis of genome-wide transcriptome responses, metabolic signatures and enzymes' relationship to biomass formation has been studied in a diverse panel of 12 barley accessions during vegetative and reproductive stages. The primary metabolites and enzymes involved in central metabolism that determine the accumulation of shoot biomass at the vegetative stage of barley development are primarily being linked to sucrose accumulation and sucrose synthase activity. Interestingly, the metabolic and enzyme links which are strongly associated with biomass accumulation during reproductive stages are related to starch accumulation and tricarboxylic acid (TCA) cycle intermediates citrate, malate, trans-aconitate and isocitrate. Additional significant associations were also found for UDP glucose, ATP and the amino acids isoleucine, valine, glutamate and histidine during the reproductive stage. A network analysis resulted in a combined identification of metabolite and enzyme signatures indicative for grain weight accumulation that was correlated with the activity of ADP-glucose pyrophosphorylase (AGPase), a rate-limiting enzyme involved in starch biosynthesis, and with that of alanine amino transferase involved in the synthesis of storage proteins. We propose that the mechanism related to vegetative and reproductive biomass formation vs. seed biomass formation is being linked to distinct fluxes regulating sucrose, starch, sugars and amino acids as central resources. These distinct biomarkers can be used to engineer biomass production and grain weight in barley.
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Affiliation(s)
- Mohammad R Ghaffari
- Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research, Education and Extension Organization (AREO), Tehran, Iran Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D-06466 Gatersleben, Germany
| | - Fahimeh Shahinnia
- Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D-06466 Gatersleben, Germany
| | - Björn Usadel
- Institute of Botany, RWTH Aachen University, BioSC Germany and IBG-2 Plant Sciences, Forschungszentrum Jülich, D-52428 Jülich, Germany
| | - Björn Junker
- Institute of Pharmacy/Biosynthesis of Active Substances, Hoher Weg 8, Halle (Saale), Germany
| | - Falk Schreiber
- Monash University, Clayton Campus, Wellington Road, Clayton, VIC 3800, Australia
| | - Nese Sreenivasulu
- International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines
| | - Mohammad R Hajirezaei
- Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D-06466 Gatersleben, Germany
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Sharbatkhari M, Shobbar ZS, Galeshi S, Nakhoda B. Wheat stem reserves and salinity tolerance: molecular dissection of fructan biosynthesis and remobilization to grains. PLANTA 2016; 244:191-202. [PMID: 27016249 DOI: 10.1007/s00425-016-2497-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Accepted: 02/29/2016] [Indexed: 06/05/2023]
Abstract
Fructan accumulation and remobilization to grains under salinity can decrease dependency of the wheat tolerant cultivar on current photosynthesis and protect it from severe yield loss under salt stress. Tolerance of plants to abiotic stresses can be enhanced by accumulation of soluble sugars, such as fructan. The current research sheds light on the role of stem fructan remobilization on yield of bread wheat under salt stress conditions. Fructan accumulation and remobilization as well as relative expression of the major genes of fructan metabolism were investigated in the penultimate internodes of 'Bam' as the salt-tolerant and 'Ghods' as the salt-sensitive wheat cultivars under salt-stressed and controlled conditions and their correlations were analyzed. More fructan production and higher efficiency of fructan remobilization was detected in Bam cultivar under salinity. Up-regulation of sucrose: sucrose 1-fructosyltransferase (1-SST) and sucrose: fructan 6-fructosyltransferase (6-SFT) (fructan biosynthesis genes) at anthesis and up-regulation of fructan exohydrolase (1-FEH) and vacuolar invertase (IVR) genes (contributed to fructan metabolism) during grain filling stage and higher expression of sucrose transporter gene (SUT1) in Bam was in accordance with its induced fructan accumulation and remobilization under salt stress. A significant correlation was observed between weight density, WSCs and gene expression changes under salt stress. Based on the these results, increased fructan production and induced stem reserves remobilization under salinity can decrease dependency of the wheat tolerant cultivar on current photosynthesis and protect it from severe yield loss under salt stress conditions.
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Affiliation(s)
- Mahrokh Sharbatkhari
- Molecular Physiology Department, Agricultural Biotechnology Research Institute of Iran (ABRII), AREEO, 3135933151, Karaj, Iran
- Department of Crop Production, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Zahra-Sadat Shobbar
- Molecular Physiology Department, Agricultural Biotechnology Research Institute of Iran (ABRII), AREEO, 3135933151, Karaj, Iran.
| | - Serrolah Galeshi
- Department of Crop Production, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Babak Nakhoda
- Molecular Physiology Department, Agricultural Biotechnology Research Institute of Iran (ABRII), AREEO, 3135933151, Karaj, Iran
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Dong Y, Zhang Y, Xiao Y, Yan J, Liu J, Wen W, Zhang Y, Jing R, Xia X, He Z. Cloning of TaSST genes associated with water soluble carbohydrate content in bread wheat stems and development of a functional marker. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2016; 129:1061-70. [PMID: 26883047 DOI: 10.1007/s00122-016-2683-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2015] [Accepted: 01/23/2016] [Indexed: 05/21/2023]
Abstract
We cloned TaSST genes, developed a gene-specific marker for TaSST-D1, and identified three QTL in the Doumai/Shi 4185 RIL population. TaSST-D1 is within one of the three QTL. Sucrose:sucrose-1-fructosyltransferase (1-SST), a critical enzyme in the fructan biosynthetic pathway, is significantly and positively associated with water soluble carbohydrate (WSC) content in bread wheat stems. In the present study, wheat 1-SST genes (TaSST) were isolated and located on chromosomes 4A, 7A and 7D. Sequence analysis of TaSST-D1 revealed 15 single nucleotide polymorphisms (SNP) in the third exon between cultivars with higher and lower WSC content. A cleaved amplified polymorphism sequence (CAPS) marker, WSC7D, based on the polymorphism at position 1216 (C-G) was developed to discriminate the two alleles. WSC7D was located on chromosome 7DS using a recombinant inbred line (RIL) population from a Doumai/Shi 4185 cross, and a set of Chinese Spring nullisomic-tetrasomic lines. TaSST-D1 co-segregated with the CAPS marker WSC7D and was linked to SNP marker BS00108793_51 on chromosome 7DS at a genetic distance of 6.1 cM. It explained 8.8, 10.9, and 11.3% of the phenotypic variances in trials at Beijing and Shijiazhuang as well as the averaged data from those environments, respectively. Two additional QTL (QWSC.caas-4BS and QWSC.caas-7AS) besides TaSST-D1 were mapped in the RIL population. One hundred and forty-nine Chinese wheat cultivars and advanced lines tested in four environments were used to validate a highly significant (P < 0.01) association between WSC7D and WSC content in wheat stems. WSC7D can be used as a gene-specific marker for improvement of stem WSC content in wheat breeding programs.
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Affiliation(s)
- Yan Dong
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
| | - Yan Zhang
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
| | - Yonggui Xiao
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
| | - Jun Yan
- Cotton Research Institute, CAAS, Huanghedadao, Anyang, Henan, China
| | - Jindong Liu
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
| | - Weie Wen
- College of Agronomy, Xinjiang Agricultural University, 311 Nongda East Road, 830052, Urumqi, Xinjiang, China
| | - Yong Zhang
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
| | - Ruilian Jing
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
| | - Xianchun Xia
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China.
| | - Zhonghu He
- National Wheat Improvement Center, Institute of Crop Science, Chinese Academy of Agricultural Sciences (CAAS), 12 Zhongguancun South Street, 100081, Beijing, China
- International Maize and Wheat Improvement Center (CIMMYT) China Office, c/o CAAS, 12 Zhongguancun South Street, 100081, Beijing, China
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42
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Zhang S, Xu M, Qiu Z, Wang K, Du Y, Gu L, Cui X. Spatiotemporal transcriptome provides insights into early fruit development of tomato (Solanum lycopersicum). Sci Rep 2016; 6:23173. [PMID: 26988970 PMCID: PMC4796798 DOI: 10.1038/srep23173] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2015] [Accepted: 02/29/2016] [Indexed: 12/13/2022] Open
Abstract
Early fruit development is crucial for crop production in tomato. After fertilization, the ovary undergoes cell division and cell expansion before maturation. Although the roles of regulatory signals such as hormone and carbohydrate during early fruit development have been studied, the spatial distribution and the sequential initiation of these regulatory signals still need to be explored. Using the tomato cultivar 'Moneymaker', we analyzed the transcriptome of the ovule and the ovary wall/pericarp dissected from four different stages of the early developing fruits by stereoscope. These datasets give us the whole picture about the spatial and temporal signal distribution in early development of ovule and pericarp. Our results indicate that the hormone signal was initiated in both ovule and pericarp after fertilization. After that, different signals were activated in ovule and pericarp due to their distinct developmental processes. Our study provides spatiotemporal regulatory landscape of gene expression with sequential information which was not studied by previous work and further strengthens the comprehension of the regulatory and metabolic events controlling early fruit development.
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Affiliation(s)
- Shuaibin Zhang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Meng Xu
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Zhengkun Qiu
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Ketao Wang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Yongchen Du
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Lianfeng Gu
- Haixia Institute of Science and Technology (HIST), Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xia Cui
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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43
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Bourgault M, James AT, Dreccer MF. Pot size matters revisited: does container size affect the response to elevated CO 2 and our ability to detect genotypic variability in this response in wheat? FUNCTIONAL PLANT BIOLOGY : FPB 2016; 44:52-61. [PMID: 32480546 DOI: 10.1071/fp16047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Accepted: 07/06/2016] [Indexed: 06/11/2023]
Abstract
Many studies have investigated the effect of elevated CO2 (eCO2) in wheat, although few have evaluated the potential of genotypic variability in the response. Such studies are the next logical step in wheat climate change adaptation research, and they will require the evaluation of large numbers of genotypes. For practical reasons the preliminary studies are most likely to be conducted in controlled environments. There have been concerns that the root restriction related to container-grown plants can influence (1) the response to eCO2, (2) the detection of genotypic variability for various traits of interest, and (3) the ability to find the genotypes most responsive to eCO2. In the present study we evaluated two sizes of container - 1.4L pots and 7.5L columns - side-by side in a glasshouse environment and found that for 14 of 23 traits observed environment effects (ambient CO2, eCO2 or eCO2 and high temperature) were not consistent between plants grown in pots and in columns. More importantly, of the 21 traits showing genotypic variability, only 8 showed consistent genotype differences and rankings across both container types. Statistical analyses conducted separately for plants grown in pots or in columns showed different cultivars as being the most responsive to elevated CO2 and would thus, have led to different conclusions. This study is intended as a message of caution to controlled environment experimenters: using small containers can artificially create conditions that could either hide or overly express genotypic variability in some traits in response to eCO2 compared with what might be expected in larger containers.
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Affiliation(s)
- Maryse Bourgault
- CSIRO Agriculture Flagship, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, Qld 4067, Australia
| | - Andrew T James
- CSIRO Agriculture Flagship, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, Qld 4067, Australia
| | - M Fernanda Dreccer
- CSIRO Agriculture Flagship, Cooper Laboratory, Warrego Highway, Gatton, Qld 4343, Australia
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Xue GP, Rae AL, White RG, Drenth J, Richardson T, McIntyre CL. A strong root-specific expression system for stable transgene expression in bread wheat. PLANT CELL REPORTS 2016; 35:469-81. [PMID: 26563345 DOI: 10.1007/s00299-015-1897-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2015] [Revised: 10/26/2015] [Accepted: 11/03/2015] [Indexed: 05/24/2023]
Abstract
A strong, stable and root-specific expression system was developed from a rice root-specific GLYCINE - RICH PROTEIN 7 promoter for use as an enabling technology for genetic manipulation of wheat root traits. Root systems play an important role in wheat productivity. Genetic manipulation of wheat root traits often requires a root-specific or root-predominant expression system as an essential enabling technology. In this study, we investigated promoters from rice root-specific or root-predominant expressed genes for development of a root expression system in bread wheat. Transient expression analysis using a GREEN FLUORESCENT PROTEIN (GFP) reporter gene driven by rice promoters identified six promoters that were strongly expressed in wheat roots. Extensive organ specificity analysis of three rice promoters in transgenic wheat revealed that the promoter of rice GLYCINE-RICH PROTEIN 7 (OsGRP7) gene conferred a root-specific expression pattern in wheat. Strong GFP fluorescence in the seminal and branch roots of wheat expressing GFP reporter driven by the OsGRP7 promoter was detected in epidermal, cortical and endodermal cells in mature parts of the root. The GFP reporter driven by the promoter of rice METALLOTHIONEIN-LIKE PROTEIN 1 (OsMTL1) gene was mainly expressed in the roots with essentially no expression in the leaf, stem or seed. However, it was also expressed in floral organs including glume, lemma, palea and awn. In contrast, strong expression of rice RCg2 promoter-driven GFP was found in many tissues. The GFP expression driven by these three rice promoters was stable in transgenic wheat plants through three generations (T1-T3) examined. These data suggest that the OsGRP7 promoter can provide a strong, stable and root-specific expression system for use as an enabling technology for genetic manipulation of wheat root traits.
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Affiliation(s)
- Gang-Ping Xue
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, QLD, 4067, Australia.
| | - Anne L Rae
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, QLD, 4067, Australia
| | - Rosemary G White
- CSIRO Agriculture, Clunies Ross Street, Canberra, ACT, 2601, Australia
| | - Janneke Drenth
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, QLD, 4067, Australia
| | - Terese Richardson
- CSIRO Agriculture, Clunies Ross Street, Canberra, ACT, 2601, Australia
| | - C Lynne McIntyre
- CSIRO Agriculture, 306 Carmody Rd., St Lucia, QLD, 4067, Australia
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45
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Gasperl A, Morvan-Bertrand A, Prud'homme MP, van der Graaff E, Roitsch T. Exogenous Classic Phytohormones Have Limited Regulatory Effects on Fructan and Primary Carbohydrate Metabolism in Perennial Ryegrass (Lolium perenne L.). FRONTIERS IN PLANT SCIENCE 2016; 6:1251. [PMID: 26834764 PMCID: PMC4719101 DOI: 10.3389/fpls.2015.01251] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Accepted: 12/21/2015] [Indexed: 05/05/2023]
Abstract
Fructans are polymers of fructose and one of the main constituents of water-soluble carbohydrates in forage grasses and cereal crops of temperate climates. Fructans are involved in cold and drought resistance, regrowth following defoliation and early spring growth, seed filling, have beneficial effects on human health and are used for industrial processes. Perennial ryegrass (Lolium perenne L.) serves as model species to study fructan metabolism. Fructan metabolism is under the control of both synthesis by fructosyltransferases (FTs) and breakdown through fructan exohydrolases (FEHs). The accumulation of fructans can be triggered by high sucrose levels and abiotic stress conditions such as drought and cold stress. However, detailed studies on the mechanisms involved in the regulation of fructan metabolism are scarce. Since different phytohormones, especially abscisic acid (ABA), are known to play an important role in abiotic stress responses, the possible short term regulation of the enzymes involved in fructan metabolism by the five classical phytohormones was investigated. Therefore, the activities of enzymes involved in fructan synthesis and breakdown, the expression levels for the corresponding genes and levels for water-soluble carbohydrates were determined following pulse treatments with ABA, auxin (AUX), ethylene (ET), gibberellic acid (GA), or kinetin (KIN). The most pronounced fast effects were a transient increase of FT activities by AUX, KIN, ABA, and ET, while minor effects were evident for 1-FEH activity with an increased activity in response to KIN and a decrease by GA. Fructan and sucrose levels were not affected. This observed discrepancy demonstrates the importance of determining enzyme activities to obtain insight into the physiological traits and ultimately the plant phenotype. The comparative analyses of activities for seven key enzymes of primary carbohydrate metabolism revealed no co-regulation between enzymes of the fructan and sucrose pool.
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Affiliation(s)
- Anna Gasperl
- Institute of Plant Sciences, Karl-Franzens-Universität GrazGraz, Austria
| | - Annette Morvan-Bertrand
- Normandie UniversitéCaen, France
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions NCS, Université de Caen NormandieCaen, France
- INRA, UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions NCSCaen, France
| | - Marie-Pascale Prud'homme
- Normandie UniversitéCaen, France
- UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions NCS, Université de Caen NormandieCaen, France
- INRA, UMR 950 Ecophysiologie Végétale, Agronomie et Nutritions NCSCaen, France
| | | | - Thomas Roitsch
- Institute of Plant Sciences, Karl-Franzens-Universität GrazGraz, Austria
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46
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Gong HY, Li Y, Fang G, Hu DH, Jin WB, Wang ZH, Li YS. Transgenic Rice Expressing Ictb and FBP/Sbpase Derived from Cyanobacteria Exhibits Enhanced Photosynthesis and Mesophyll Conductance to CO2. PLoS One 2015; 10:e0140928. [PMID: 26488581 PMCID: PMC4638112 DOI: 10.1371/journal.pone.0140928] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 10/01/2015] [Indexed: 01/05/2023] Open
Abstract
To find a way to promote the rate of carbon flux and further improve the photosynthetic rate in rice, two CO2-transporting and fixing relevant genes, Ictb and FBP/Sbpase, which were derived from cyanobacteria with the 35SCaMV promotor in the respective constructs, were transformed into rice. Three homologous transgenic groups with Ictb, FBP/Sbpase and the two genes combined were constructed in parallel, and the functional effects of these two genes were investigated by physiological, biochemical and leaf anatomy analyses. The results indicated that the mesophyll conductance and net photosynthetic rate were higher at approximately 10.5-36.8% and 13.5-34.6%, respectively, in the three groups but without any changes in leaf anatomy structure compared with wild type. Other physiological and biochemical parameters increased with the same trend in the three groups, which showed that the effect of FBP/SBPase on improving photosynthetic capacity was better than that of ICTB and that there was an additive effect in ICTB+FBP/SBPase. ICTB localized in the cytoplasm, whereas FBP/SBPase was successfully transported to the chloroplast. The two genes might show a synergistic interaction to promote carbon flow and the assimilation rate as a whole. The multigene transformation engineering and its potential utility for improving the photosynthetic capacity and yield in rice were discussed.
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Affiliation(s)
- Han Yu Gong
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
- Engineering Research Centre for the Protection and Utilization of
Bioresource in Ethnic Area of Southern China, South-Central University for
Nationalities, Wuhan, China
| | - Yang Li
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
| | - Gen Fang
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
| | - Dao Heng Hu
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
| | - Wen Bin Jin
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
| | - Zhao Hai Wang
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
| | - Yang Sheng Li
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan
University, Wuhan, China
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Sallam A, Hashad M, Hamed ES, Omara M. Genetic variation of stem characters in wheat and their relation to kernel weight under drought and heat stresses. ACTA ACUST UNITED AC 2015. [DOI: 10.1007/s12892-015-0014-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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48
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Zhang J, Chen W, Dell B, Vergauwen R, Zhang X, Mayer JE, Van den Ende W. Wheat genotypic variation in dynamic fluxes of WSC components in different stem segments under drought during grain filling. FRONTIERS IN PLANT SCIENCE 2015; 6:624. [PMID: 26322065 PMCID: PMC4531436 DOI: 10.3389/fpls.2015.00624] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 07/27/2015] [Indexed: 05/13/2023]
Abstract
In wheat, stem water soluble carbohydrates (WSC), composed mainly of fructans, are the major carbon sources for grain filling during periods of decreasing photosynthesis or under drought stress after anthesis. Here, in a field drought experiment, WSC levels and associated enzyme activities were followed in different stem segments (peduncle, penultimate internode, lower parts of stem, and sheath) during grain filling. The focus was on two double haploid (DH) lines, DH 307 and DH 338, derived from a Westonia/Kauz cross, two drought-tolerant wheat varieties that follow different drought adaptation strategies during grain filling. The results showed that in irrigated plants, in the period between 20 and 30 days after anthesis (DAA), 70-80% of WSC were fructans. Before and after this period, the fructan proportion varied from 10 to 60%, depending on the location along the stem. Under drought, the fructan proportion changed, depending on genotype, and developmental stages. After anthesis, stem fructans accumulation occurred mainly in the peduncle and penultimate internode until 14 DAA in both DH lines, with clear genotypic variation in subsequent fructan degradation under drought. In DH 307 a significant reduction of fructans with a concomitant increase in fructose levels occurred earlier in the lower parts of the stem and the sheath, as compared to DH 338 or other stem segments in both lines. This was associated with an earlier increase of grain weight and thousand grain weight in DH 307. Spatiotemporal analysis of fructan dynamics and enzymatic activities in fructan metabolism revealed that several types of FEHs are involved in fructan remobilization to the grain under drought.
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Affiliation(s)
- Jingjuan Zhang
- Agricultural Sciences, School of Veterinary and Life Sciences, Murdoch UniversityMurdoch, WA, Australia
| | - Wei Chen
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water ResourcesYangling, Shaanxi, China
| | - Bernard Dell
- Agricultural Sciences, School of Veterinary and Life Sciences, Murdoch UniversityMurdoch, WA, Australia
| | - Rudy Vergauwen
- Lab of Molecular Plant Biology, Institute of Botany and Microbiology, KU LeuvenLeuven, Belgium
| | - Xinmin Zhang
- Agricultural Sciences, School of Veterinary and Life Sciences, Murdoch UniversityMurdoch, WA, Australia
| | - Jorge E. Mayer
- Grains Research and Development CorporationBarton, ACT, Australia
| | - Wim Van den Ende
- Lab of Molecular Plant Biology, Institute of Botany and Microbiology, KU LeuvenLeuven, Belgium
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Suneja Y, Gupta AK, Sharma A, Bains NS. Differential response of wild and cultivated wheats to water deficits during grain development: changes in soluble carbohydrates and invertases. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2015; 21:169-77. [PMID: 25964711 PMCID: PMC4411390 DOI: 10.1007/s12298-015-0283-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Revised: 02/09/2015] [Accepted: 03/02/2015] [Indexed: 05/08/2023]
Abstract
Wheat, staple food crop of the world, is sensitive to drought, especially during the grain-filling period. Water soluble carbohydrates (WSCs), stem reserve mobilization and higher invertase activity in the developing grains are important biochemical traits for breeding wheat to enhance tolerance to terminal drought. These traits were studied for three accessions of Triticum dicoccoides(a tetraploid wheat progenitor species) - acc 7054 (EC 171812), acc 7079 (EC 171837) and acc 14004 (G-194-3 M-6 M) selected previously on the basis of grain filling characteristics. Check wheat cultivars- PBW-343 (a popular bread wheat cultivar for irrigated environments) and C-306 (widely adapted variety for rain-fed agriculture) were also included in this set. Analysis of variance revealed significant genotypic differences for the content of water soluble carbohydrates, activity of acid invertase and alkaline invertase. Acc 7079 was found to be a very efficient mobilizer of water soluble carbohydrates (236.43 mg g(-1) peduncle DW) when averaged over irrigated and rain-fed conditions. Acid invertase activity revealed marked genotypic differences between wild and cultivated wheats. Alkaline invertase activity was highest in Acc 7079 when pooled across both the environments. On the whole, acc 7079 qualifies as a suitable donor for enhancing tolerance of bread wheat to terminal drought. The association of physio-biochemical differences observed with grain filling attributes on one hand and molecular markers on the other could be of use in improving wheat for water stress conditions.
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Affiliation(s)
- Yadhu Suneja
- />Department of Biochemistry, Punjab Agricultural University, Ludhiana, 141004 India
| | - Anil K Gupta
- />Department of Biochemistry, Punjab Agricultural University, Ludhiana, 141004 India
| | - Achla Sharma
- />Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, 141004 India
| | - Navtej S Bains
- />Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, 141004 India
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Wei Z, Qu Z, Zhang L, Zhao S, Bi Z, Ji X, Wang X, Wei H. Overexpression of poplar xylem sucrose synthase in tobacco leads to a thickened cell wall and increased height. PLoS One 2015; 10:e0120669. [PMID: 25807295 PMCID: PMC4373717 DOI: 10.1371/journal.pone.0120669] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2014] [Accepted: 01/24/2015] [Indexed: 01/26/2023] Open
Abstract
Sucrose synthase (SuSy) is considered the first key enzyme for secondary growth because it is a highly regulated cytosolic enzyme that catalyzes the reversible conversion of sucrose and UDP into UDP-glucose and fructose. Although SuSy enzymes preferentially functions in the direction of sucrose cleavage at most cellular condition, they also catalyze the synthetic reaction. We isolated a gene that encodes a SuSy from Populus simonii×Populus nigra and named it PsnSuSy2 because it shares high similarity to SuSy2 in Populus trichocarpa. RT-PCR revealed that PsnSuSy2 was highly expressed in xylem, but lowly expressed in young leaves. To characterize its functions in secondary growth, multiple tobacco overexpression transgenic lines of PnsSuSy2 were generated via Agrobacterium-mediated transformation. The PsnSuSy2 expression levels and altered wood properties in stem segments from the different transgenic lines were carefully characterized. The results demonstrated that the levels of PsnSuSy2 enzyme activity, chlorophyll content, total soluble sugars, fructose and glucose increased significantly, while the sucrose level decreased significantly. Consequently, the cellulose content and fiber length increased, whereas the lignin content decreased, suggesting that PsnSuSy2 plays a significant role in cleaving sucrose into UDP-glucose and fructose to facilitate cellulose biosynthesis and that promotion of cellulose biosynthesis suppresses lignin biosynthesis. Additionally, the noticeable increase in the lodging resistance in transgenic tobacco stem suggested that the cell wall characteristics were altered by PsnSuSy2 overexpression. Scanning electron microscopy was performed to study the cell wall morphology of stem, and surprisingly, we found that the secondary cell wall was significantly thicker in transgenic tobacco. However, the thickened secondary cell wall did not negatively affect the height of the plants because the PsnSuSy2- overexpressing lines grew taller than the wildtype plants. This systematic analysis demonstrated that PsnSuSy2 plays an important role in cleaving sucrose coupled with cellulose biosynthesis in wood tissue.
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Affiliation(s)
- Zhigang Wei
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Zanshuang Qu
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Lijie Zhang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Shuanjing Zhao
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Zhihong Bi
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Xiaohui Ji
- College of Information and Computer Engineering, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Xiaowen Wang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Heilongjiang Harbin, P. R. China
| | - Hairong Wei
- School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, Michigan, United States of America
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