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Tsuzuki K, Suzuki T, Kuruma M, Nishiyama K, Hayashi KI, Hagihara S, Seto Y. Radicle Growth Regulation of Root Parasitic Plants by Auxin-related Compounds. PLANT & CELL PHYSIOLOGY 2024; 65:1377-1387. [PMID: 38943636 DOI: 10.1093/pcp/pcae071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 06/18/2024] [Accepted: 06/28/2024] [Indexed: 07/01/2024]
Abstract
Root parasitic plants in the Orobanchaceae, such as Striga and Orobanche, cause significant damage to crop production. The germination step of these root parasitic plants is induced by host-root-derived strigolactones. After germination, the radicles elongate toward the host and invade the host root. We have previously discovered that a simple amino acid, tryptophan (Trp), as well as its metabolite, the plant hormone indole-3-acetic acid (IAA), can inhibit radicle elongation of Orobanche minor. These results suggest that auxin plays a crucial role in the radicle elongation step in root parasitic plants. In this report, we used various auxin chemical probes to dissect the auxin function in the radicle growth of O. minor and Striga hermonthica. We found that synthetic auxins inhibited radicle elongation. In addition, auxin receptor antagonist, auxinole, rescued the inhibition of radicle growth by exogenous IAA. Moreover, a polar transport inhibitor of auxin, N-1-naphthylphthalamic acid, affected radicle bending. We also proved that exogenously applied Trp is converted into IAA in O. minor seeds, and auxinole partly rescued this radicle elongation. Taken together, our data demonstrate a pivotal role for auxin in radicle growth. Thus, manipulation of auxin function in root parasitic plants should offer a useful approach to combat these parasites.
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Affiliation(s)
- Kei Tsuzuki
- Laboratory of Plant Chemical Regulation, School of Agriculture, Meiji University, 1-1-1, Higashi-Mita, Tama-ku, Kawasaki, Kanagawa, 214-8571 Japan
| | - Taiki Suzuki
- Laboratory of Plant Chemical Regulation, School of Agriculture, Meiji University, 1-1-1, Higashi-Mita, Tama-ku, Kawasaki, Kanagawa, 214-8571 Japan
| | - Michio Kuruma
- Laboratory of Plant Chemical Regulation, School of Agriculture, Meiji University, 1-1-1, Higashi-Mita, Tama-ku, Kawasaki, Kanagawa, 214-8571 Japan
- RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Kotaro Nishiyama
- Laboratory of Plant Chemical Regulation, School of Agriculture, Meiji University, 1-1-1, Higashi-Mita, Tama-ku, Kawasaki, Kanagawa, 214-8571 Japan
| | - Ken-Ichiro Hayashi
- Department of Bioscience, Okayama University of Science, 1-1 Ridaimachi, Kita-ku, Okayama, Okayama 700-0005, Japan
| | - Shinya Hagihara
- RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Yoshiya Seto
- Laboratory of Plant Chemical Regulation, School of Agriculture, Meiji University, 1-1-1, Higashi-Mita, Tama-ku, Kawasaki, Kanagawa, 214-8571 Japan
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Fotopoulos I, Hadjipavlou-Litina D. Approaches for the discovery of cinnamic acid derivatives with anticancer potential. Expert Opin Drug Discov 2024:1-11. [PMID: 39105559 DOI: 10.1080/17460441.2024.2387122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 07/29/2024] [Indexed: 08/07/2024]
Abstract
INTRODUCTION Cinnamic acid is a privileged scaffold for the design of biologically active compounds with putative anticancer potential, following different synthetic methodologies and procedures. Since there is a need for the production of potent anticancer, cinnamate moiety can significantly contribute in the design of new and more active anticancer agents. AREAS COVERED In this review, the authors provide a review on the synthetic approaches for the discovery of cinnamic acid derivatives with anticancer potential. Results from molecular simulations, hybridization, and chemical derivatization along with biological experiments in vitro and structural activity relationships are given, described, and discussed by the authors. Information for the mechanism of action is taken from original literature sources. EXPERT OPINION The authors suggest that (i) numerous areas of biology-pharmacology need to be considered: selectivity, in vivo studies, toxicity and drug-likeness, the mechanism of action in animals and humans, development of more efficient assays for various cancer types; (ii) hybridization techniques outbalance in the discovery and production of compounds with higher activity and greater selectivity; (iii) repositioning offers new anticancer cinnamic agents.
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Affiliation(s)
- Ioannis Fotopoulos
- Department of Pharmaceutical Chemistry, Aristotle University of Thessaloniki, Thessaloniki, Greece
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3
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Kato-Noguchi H. Isolation and identification of allelochemicals and their activities and functions. JOURNAL OF PESTICIDE SCIENCE 2024; 49:1-14. [PMID: 38450087 PMCID: PMC10912975 DOI: 10.1584/jpestics.d23-052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 10/29/2023] [Indexed: 03/08/2024]
Abstract
Allelopathy is the interaction between donor plants and receiver plants through allelochemicals. According to a great number of publications, allelopathy may be involved in several ecological aspects such as the formation of monospecific stands and sparse understory vegetation for certain plant species. Allelopathy also contributes to the naturalization of invasive plant species in introduced ranges. Autotoxicity is a particular type of allelopathy involving certain compounds. Many medicinal plants have been reported to show relatively high allelopathic activity. We selected plant species that show high allelopathic activity and isolated allelochemicals through the bioassay-guided purification process. More than 100 allelochemicals, including novel compounds have been identified in some medicinal and invasive plants, plants forming monospecific stands, plants with sparse understory vegetation, and plants showing autotoxicity. The allelopathic activity of benzoxazinones and related compounds was also determined.
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Affiliation(s)
- Hisashi Kato-Noguchi
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University
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4
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Rates ADB, Cesarino I. Pour some sugar on me: The diverse functions of phenylpropanoid glycosylation. JOURNAL OF PLANT PHYSIOLOGY 2023; 291:154138. [PMID: 38006622 DOI: 10.1016/j.jplph.2023.154138] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 11/06/2023] [Indexed: 11/27/2023]
Abstract
The phenylpropanoid metabolism is the source of a vast array of specialized metabolites that play diverse functions in plant growth and development and contribute to all aspects of plant interactions with their surrounding environment. These compounds protect plants from damaging ultraviolet radiation and reactive oxygen species, provide mechanical support for the plants to stand upright, and mediate plant-plant and plant-microorganism communications. The enormous metabolic diversity of phenylpropanoids is further expanded by chemical modifications known as "decorative reactions", including hydroxylation, methylation, glycosylation, and acylation. Among these modifications, glycosylation is the major driving force of phenylpropanoid structural diversification, also contributing to the expansion of their properties. Phenylpropanoid glycosylation is catalyzed by regioselective uridine diphosphate (UDP)-dependent glycosyltransferases (UGTs), whereas glycosyl hydrolases known as β-glucosidases are the major players in deglycosylation. In this article, we review how the glycosylation process affects key physicochemical properties of phenylpropanoids, such as molecular stability and solubility, as well as metabolite compartmentalization/storage and biological activity/toxicity. We also summarize the recent knowledge on the functional implications of glycosylation of different classes of phenylpropanoid compounds. A balance of glycosylation/deglycosylation might represent an essential molecular mechanism to regulate phenylpropanoid homeostasis, allowing plants to dynamically respond to diverse environmental signals.
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Affiliation(s)
- Arthur de Barros Rates
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, 05508-090, São Paulo, Brazil
| | - Igor Cesarino
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, 05508-090, São Paulo, Brazil; Synthetic and Systems Biology Center, InovaUSP, Avenida Professor Lucio Martins Rodrigues 370, 05508-020, São Paulo, Brazil.
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van der Meij A, Elsayed SS, Du C, Willemse J, Wood TM, Martin NI, Raaijmakers JM, van Wezel GP. The plant stress hormone jasmonic acid evokes defensive responses in streptomycetes. Appl Environ Microbiol 2023; 89:e0123923. [PMID: 37902333 PMCID: PMC10686085 DOI: 10.1128/aem.01239-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 09/21/2023] [Indexed: 10/31/2023] Open
Abstract
IMPORTANCE Microorganisms that live on or inside plants can influence plant growth and health. Among the plant-associated bacteria, streptomycetes play an important role in defense against plant diseases, but the underlying mechanisms are not well understood. Here, we demonstrate that the plant hormones jasmonic acid (JA) and methyl jasmonate directly affect the life cycle of streptomycetes by modulating antibiotic synthesis and promoting faster development. Moreover, the plant hormones specifically stimulate the synthesis of the polyketide antibiotic actinorhodin in Streptomyces coelicolor. JA is then modified in the cell by amino acid conjugation, thereby quenching toxicity. Collectively, these results provide new insight into the impact of a key plant hormone on diverse phenotypic responses of streptomycetes.
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Affiliation(s)
- Anne van der Meij
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
| | - Somayah S. Elsayed
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
| | - Chao Du
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
| | - Joost Willemse
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
| | - Thomas M. Wood
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
| | - Nathaniel I. Martin
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
| | - Jos M. Raaijmakers
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, the Netherlands
| | - Gilles P. van Wezel
- Molecular Biotechnology, Institute of Biology, Leiden University, the Netherlands, Leiden
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, the Netherlands
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Nguyen TP, Meng DR, Chang CH, Su PY, Ou CA, Hou PF, Sung HM, Chou CH, Ohme-Takagi M, Huang HJ. Antifungal mechanism of volatile compounds emitted by Actinomycetota Paenarthrobacter ureafaciens from a disease-suppressive soil on Saccharomyces cerevisiae. mSphere 2023; 8:e0032423. [PMID: 37750721 PMCID: PMC10597458 DOI: 10.1128/msphere.00324-23] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Accepted: 08/07/2023] [Indexed: 09/27/2023] Open
Abstract
Increasing evidence suggests that in disease-suppressive soils, microbial volatile compounds (mVCs) released from bacteria may inhibit the growth of plant-pathogenic fungi. However, the antifungal activities and molecular responses of fungi to different mVCs remain largely undescribed. In this study, we first evaluated the responses of pathogenic fungi to treatment with mVCs from Paenarthrobacter ureafaciens. Then, we utilized the well-characterized fungal model organism Saccharomyces cerevisiae to study the potential mechanistic effects of the mVCs. Our data showed that exposure to P. ureafaciens mVCs leads to reduced growth of several pathogenic fungi, and in yeast cells, mVC exposure prompts the accumulation of reactive oxygen species. Further experiments with S. cerevisiae deletion mutants indicated that Slt2/Mpk1 and Hog1 MAPKs play major roles in the yeast response to P. ureafaciens mVCs. Transcriptomic analysis revealed that exposure to mVCs was associated with 1,030 differentially expressed genes (DEGs) in yeast. According to gene ontology and Kyoto Encyclopedia of Genes and Genomes analyses, many of these DEGs are involved in mitochondrial dysfunction, cell integrity, mitophagy, cellular metabolism, and iron uptake. Genes encoding antimicrobial proteins were also significantly altered in the yeast after exposure to mVCs. These findings suggest that oxidative damage and mitochondrial dysfunction are major contributors to the fungal toxicity of mVCs. Furthermore, our data showed that cell wall, antioxidant, and antimicrobial defenses are induced in yeast exposed to mVCs. Thus, our findings expand upon previous research by delineating the transcriptional responses of the fungal model. IMPORTANCE Since the use of bacteria-emitted volatile compounds in phytopathogen control is of considerable interest, it is important to understand the molecular mechanisms by which fungi may adapt to microbial volatile compounds (mVCs). Paenarthrobacter ureafaciens is an isolated bacterium from disease-suppressive soil that belongs to the Actinomycetota phylum. P. ureafaciens mVCs showed a potent antifungal effect on phytopathogens, which may contribute to disease suppression in soil. However, our knowledge about the antifungal mechanism of mVCs is limited. This study has proven that mVCs are toxic to fungi due to oxidative stress and mitochondrial dysfunction. To deal with mVC toxicity, antioxidants and physical defenses are required. Furthermore, iron uptake and CAP proteins are required for antimicrobial defense, which is necessary for fungi to deal with the thread from mVCs. This study provides essential foundational knowledge regarding the molecular responses of fungi to inhibitory mVCs.
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Affiliation(s)
- Tri-Phuong Nguyen
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - De-Rui Meng
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Ching-Han Chang
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, Tainan, Taiwan
| | - Pei-Yu Su
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Chieh-An Ou
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Ping-Fu Hou
- Kaohsiung District Agricultural Research and Extension Station, Pingtung, Taiwan
| | - Huang-Mo Sung
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Chang-Hung Chou
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Masaru Ohme-Takagi
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan
| | - Hao-Jen Huang
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, Tainan, Taiwan
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7
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Suwanchaikasem P, Nie S, Selby‐Pham J, Walker R, Boughton BA, Idnurm A. Hormonal and proteomic analyses of southern blight disease caused by Athelia rolfsii and root chitosan priming on Cannabis sativa in an in vitro hydroponic system. PLANT DIRECT 2023; 7:e528. [PMID: 37692128 PMCID: PMC10485662 DOI: 10.1002/pld3.528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 08/05/2023] [Accepted: 08/11/2023] [Indexed: 09/12/2023]
Abstract
Southern blight disease, caused by the fungal pathogen Athelia rolfsii, suppresses plant growth and reduces product yield in Cannabis sativa agriculture. Mechanisms of pathology of this soil-borne disease remain poorly understood, with disease management strategies reliant upon broad-spectrum antifungal use. Exposure to chitosan, a natural elicitor, has been proposed as an alternative method to control diverse fungal diseases in an eco-friendly manner. In this study, C. sativa plants were grown in the Root-TRAPR system, a transparent hydroponic growth device, where plant roots were primed with .2% colloidal chitosan prior to A. rolfsii inoculation. Both chitosan-primed and unprimed inoculated plants displayed classical symptoms of wilting and yellowish leaves, indicating successful infection. Non-primed infected plants showed increased shoot defense responses with doubling of peroxidase and chitinase activities. The levels of growth and defense hormones including auxin, cytokinin, and jasmonic acid were increased 2-5-fold. In chitosan-primed infected plants, shoot peroxidase activity and phytohormone levels were decreased 1.5-4-fold relative to the unprimed infected plants. When compared with shoots, roots were less impacted by A. rolfsii infection, but the pathogen secreted cell wall-degrading enzymes into the root-growth solution. Chitosan priming inhibited root growth, with root lengths of chitosan-primed plants approximately 65% shorter than the control, but activated root defense responses, with root peroxidase activity increased 2.7-fold along with increased secretion of defense proteins. The results suggest that chitosan could be an alternative platform to manage southern blight disease in C. sativa cultivation; however, further optimization is required to maximize effectiveness of chitosan.
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Affiliation(s)
| | - Shuai Nie
- Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science and Biotechnology InstituteUniversity of MelbourneMelbourneVictoriaAustralia
| | - Jamie Selby‐Pham
- School of BioSciencesUniversity of MelbourneMelbourneVictoriaAustralia
- Cannabis and Biostimulants Research Group Pty LtdMelbourneVictoriaAustralia
| | - Robert Walker
- School of BioSciencesUniversity of MelbourneMelbourneVictoriaAustralia
| | - Berin A. Boughton
- School of BioSciencesUniversity of MelbourneMelbourneVictoriaAustralia
- Australian National Phenome CentreMurdoch UniversityPerthWestern AustraliaAustralia
| | - Alexander Idnurm
- School of BioSciencesUniversity of MelbourneMelbourneVictoriaAustralia
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Muro-Villanueva F, Pysh LD, Kim H, Bouse T, Ralph J, Luo Z, Cooper BR, Jannasch AS, Zhang Z, Gu C, Chapple C. Pinoresinol rescues developmental phenotypes of Arabidopsis phenylpropanoid mutants overexpressing FERULATE 5-HYDROXYLASE. Proc Natl Acad Sci U S A 2023; 120:e2216543120. [PMID: 37487096 PMCID: PMC10401026 DOI: 10.1073/pnas.2216543120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 06/12/2023] [Indexed: 07/26/2023] Open
Abstract
Most phenylpropanoid pathway flux is directed toward the production of monolignols, but this pathway also generates multiple bioactive metabolites. The monolignols coniferyl and sinapyl alcohol polymerize to form guaiacyl (G) and syringyl (S) units in lignin, components that are characteristic of plant secondary cell walls. Lignin negatively impacts the saccharification potential of lignocellulosic biomass. Although manipulation of its content and composition through genetic engineering has reduced biomass recalcitrance, in some cases, these genetic manipulations lead to impaired growth. The reduced-growth phenotype is often attributed to poor water transport due to xylem collapse in low-lignin mutants, but alternative models suggest that it could be caused by the hyper- or hypoaccumulation of phenylpropanoid intermediates. In Arabidopsis thaliana, overexpression of FERULATE 5-HYDROXYLASE (F5H) shifts the normal G/S lignin ratio to nearly pure S lignin and does not result in substantial changes to plant growth. In contrast, when we overexpressed F5H in the low-lignin mutants cinnamyl dehydrogenase c and d (cadc cadd), cinnamoyl-CoA reductase 1, and reduced epidermal fluorescence 3, plant growth was severely compromised. In addition, cadc cadd plants overexpressing F5H exhibited defects in lateral root development. Exogenous coniferyl alcohol (CA) and its dimeric coupling product, pinoresinol, rescue these phenotypes. These data suggest that mutations in the phenylpropanoid pathway limit the biosynthesis of pinoresinol, and this effect is exacerbated by overexpression of F5H, which further draws down cellular pools of its precursor, CA. Overall, these genetic manipulations appear to restrict the synthesis of pinoresinol or a downstream metabolite that is necessary for plant growth.
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Affiliation(s)
- Fabiola Muro-Villanueva
- Department of Biochemistry, Purdue University, West Lafayette, IN47907
- Center for Plant Biology, Purdue University, West Lafayette, IN47907
| | | | - Hoon Kim
- US Department of Energy’s Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, WI53726
| | - Tyler Bouse
- Department of Biochemistry, Purdue University, West Lafayette, IN47907
| | - John Ralph
- US Department of Energy’s Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, WI53726
- Department of Biochemistry, University of Wisconsin-Madison, Madison, WI53706
| | - Zhiwei Luo
- Department of Biochemistry, Purdue University, West Lafayette, IN47907
- Center for Plant Biology, Purdue University, West Lafayette, IN47907
| | - Bruce R. Cooper
- Bindley Bioscience Center, Purdue University, West Lafayette, IN47907
| | - Amber S. Jannasch
- Bindley Bioscience Center, Purdue University, West Lafayette, IN47907
| | - Zeyu Zhang
- Department of Statistics, Purdue University, West Lafayette, IN47907
| | - Chong Gu
- Department of Statistics, Purdue University, West Lafayette, IN47907
| | - Clint Chapple
- Department of Biochemistry, Purdue University, West Lafayette, IN47907
- Center for Plant Biology, Purdue University, West Lafayette, IN47907
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Suwanchaikasem P, Nie S, Idnurm A, Selby‐Pham J, Walker R, Boughton BA. Effects of chitin and chitosan on root growth, biochemical defense response and exudate proteome of Cannabis sativa. PLANT-ENVIRONMENT INTERACTIONS (HOBOKEN, N.J.) 2023; 4:115-133. [PMID: 37362423 PMCID: PMC10290428 DOI: 10.1002/pei3.10106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 03/09/2023] [Accepted: 03/19/2023] [Indexed: 06/28/2023]
Abstract
Fungal pathogens pose a major threat to Cannabis sativa production, requiring safe and effective management procedures to control disease. Chitin and chitosan are natural molecules that elicit plant defense responses. Investigation of their effects on C. sativa will advance understanding of plant responses towards elicitors and provide a potential pathway to enhance plant resistance against diseases. Plants were grown in the in vitro Root-TRAPR system and treated with colloidal chitin and chitosan. Plant morphology was monitored, then plant tissues and exudates were collected for enzymatic activity assays, phytohormone quantification, qPCR analysis and proteomics profiling. Chitosan treatments showed increased total chitinase activity and expression of pathogenesis-related (PR) genes by 3-5 times in the root tissues. In the exudates, total peroxidase and chitinase activities and levels of defense proteins such as PR protein 1 and endochitinase 2 were increased. Shoot development was unaffected, but root development was inhibited after chitosan exposure. In contrast, chitin treatments had no significant impact on any defense parameters, including enzymatic activities, hormone quantities, gene expression levels and root secreted proteins. These results indicate that colloidal chitosan, significantly enhancing defense responses in C. sativa root system, could be used as a potential elicitor, particularly in hydroponic scenarios to manage crop diseases.
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Affiliation(s)
| | - Shuai Nie
- Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science and Biotechnology InstituteUniversity of MelbourneMelbourneVictoria3052Australia
| | - Alexander Idnurm
- School of BioSciencesUniversity of MelbourneMelbourneVictoria3010Australia
| | - Jamie Selby‐Pham
- School of BioSciencesUniversity of MelbourneMelbourneVictoria3010Australia
- Cannabis and Biostimulants Research Group Pty LtdMelbourneVictoria3020Australia
| | - Robert Walker
- School of BioSciencesUniversity of MelbourneMelbourneVictoria3010Australia
| | - Berin A. Boughton
- School of BioSciencesUniversity of MelbourneMelbourneVictoria3010Australia
- Australian National Phenome CentreMurdoch UniversityPerthWestern Australia6150Australia
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Nishimura T, Makigawa S, Sun J, Kodama K, Sugiyama H, Matsumoto K, Iwata T, Wasano N, Kano A, Morita MT, Fujii Y, Shindo M. Design and synthesis of strong root gravitropism inhibitors with no concomitant growth inhibition. Sci Rep 2023; 13:5173. [PMID: 36997582 PMCID: PMC10063617 DOI: 10.1038/s41598-023-32063-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 03/22/2023] [Indexed: 04/01/2023] Open
Abstract
Herein, we describe a highly potent gravitropic bending inhibitor with no concomitant growth inhibition. Previously, we reported that (2Z,4E)-5-phenylpenta-2,4-dienoic acid (ku-76) selectively inhibits root gravitropic bending of lettuce radicles at 5 μM. Based on the structure-activity relationship study of ku-76 as a lead compound, we designed and synthesized various C4-substituted analogs of ku-76. Among the analogs, 4-phenylethynyl analog exhibited the highest potency for gravitropic bending inhibition, which was effective at only 0.01 μM. Remarkably, 4-phenylethynyl analog is much more potent than the known inhibitor, NPA. Substitution in the para position on the aromatic ring of 4-phenylethynyl group was tolerated without diminished activity. In addition, evaluation using Arabidopsis indicated that 4-phenylethynyl analog inhibits gravitropism by affecting auxin distribution in the root tips. Based on the effects on Arabidopsis phenotypes, 4-phenylethynyl analog may be a novel inhibitor that differs in action from the previously reported auxin transport inhibitors.
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Affiliation(s)
- Takeshi Nishimura
- Division of Plant Environmental Responses, National Institute for Basic Biology, Nishigonaka 38, Myodaiji, Okazaki, 444-8585, Japan
| | - Saki Makigawa
- Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Jun Sun
- Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Kozue Kodama
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Hiromi Sugiyama
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Kenji Matsumoto
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
- Department of Engineering, Graduate School of Science and Engineering, Kagoshima University, Kagoshima, Japan
| | - Takayuki Iwata
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Naoya Wasano
- International Environmental and Agricultural Sciences, Tokyo University of Agriculture and Technology, 3-5-8, Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan
- Institute of Biological Control, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
| | - Arihiro Kano
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Miyo Terao Morita
- Division of Plant Environmental Responses, National Institute for Basic Biology, Nishigonaka 38, Myodaiji, Okazaki, 444-8585, Japan
| | - Yoshiharu Fujii
- International Environmental and Agricultural Sciences, Tokyo University of Agriculture and Technology, 3-5-8, Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan
| | - Mitsuru Shindo
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan.
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11
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Moreno-Robles A, Cala Peralta A, Zorrilla JG, Soriano G, Masi M, Vilariño-Rodríguez S, Cimmino A, Fernández-Aparicio M. Structure-Activity Relationship (SAR) Study of trans-Cinnamic Acid and Derivatives on the Parasitic Weed Cuscuta campestris. PLANTS (BASEL, SWITZERLAND) 2023; 12:697. [PMID: 36840045 PMCID: PMC9962612 DOI: 10.3390/plants12040697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 01/11/2023] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
Cuscuta campestris Yunck. is a parasitic weed responsible for severe yield losses in crops worldwide. The selective control of this weed is scarce due to the difficult application of methods that kill the parasite without negatively affecting the infected crop. trans-Cinnamic acid is secreted by plant roots naturally into the rhizosphere, playing allelopathic roles in plant-plant communities, although its activity in C. campestris has never been investigated. In the search for natural molecules with phytotoxic activity against parasitic weeds, this work hypothesized that trans-cinnamic acid could be active in inhibiting C. campestris growth and that a study of a series of analogs could reveal key structural features for its growth inhibition activity. In the present structure-activity relationship (SAR) study, we determined in vitro the inhibitory activity of trans-cinnamic acid and 24 analogs. The results showed that trans-cinnamic acid's growth inhibition of C. campestris seedlings is enhanced in eight of its derivatives, namely hydrocinnamic acid, 3-phenylpropionaldehyde, trans-cinnamaldehyde, trans-4-(trifluoromethyl)cinnamic acid, trans-3-chlorocinnamic acid, trans-4-chlorocinnamic acid, trans-4-bromocinnamic acid, and methyl trans-cinnamate. Among the derivatives studied, the methyl ester derivative of trans-cinnamic acid was the most active compound. The findings of this SAR study provide knowledge for the design of herbicidal treatments with enhanced activity against parasitic weeds.
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Affiliation(s)
- Antonio Moreno-Robles
- Department of Plant Breeding, Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Antonio Cala Peralta
- Allelopathy Group, Department of Organic Chemistry, Facultad de Ciencias, Institute of Biomolecules (INBIO), University of Cadiz, C/Avenida República Saharaui, s/n, 11510 Puerto Real, Spain
| | - Jesús G. Zorrilla
- Allelopathy Group, Department of Organic Chemistry, Facultad de Ciencias, Institute of Biomolecules (INBIO), University of Cadiz, C/Avenida República Saharaui, s/n, 11510 Puerto Real, Spain
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Via Cintia, 80126 Naples, Italy
| | - Gabriele Soriano
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Via Cintia, 80126 Naples, Italy
| | - Marco Masi
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Via Cintia, 80126 Naples, Italy
| | | | - Alessio Cimmino
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Via Cintia, 80126 Naples, Italy
| | - Mónica Fernández-Aparicio
- Department of Plant Breeding, Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
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12
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López-González D, Bruno L, Díaz-Tielas C, Lupini A, Aci MM, Talarico E, Madeo ML, Muto A, Sánchez-Moreiras AM, Araniti F. Short-Term Effects of Trans-Cinnamic Acid on the Metabolism of Zea mays L. Roots. PLANTS (BASEL, SWITZERLAND) 2023; 12:189. [PMID: 36616318 PMCID: PMC9824805 DOI: 10.3390/plants12010189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 12/21/2022] [Accepted: 12/22/2022] [Indexed: 06/17/2023]
Abstract
trans-Cinnamic acid is a phenolic compound widely studied in plant metabolism due to its importance in regulating different plant processes. Previous studies on maize plants showed that this compound could affect plant growth and causes metabolic changes in the leaves when applied. However, its effects on root metabolism are not well known. This study analyses the short-term effect of trans-cinnamic acid on the morphology of vascular bundle elements and metabolism in maize roots. At short times (between 6 and 12 h), there is a reduction in the content of many amino acids which may be associated with the altered nitrogen uptake observed in earlier work. In addition, the compound caused an alteration of the vascular bundles at 48 h and seemed to have changed the metabolism in roots to favor lignin and galactose synthesis. The results obtained complement those previously carried out on maize plants, demonstrating that in the short term trans-cinnamic acid can trigger stress-coping processes in the treated plants.
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Affiliation(s)
- David López-González
- Departmento de Bioloxía Vexetal e Ciencia do Solo, Facultade de Bioloxía, Universidade de Vigo, Campus Lagoas-Marcosende s/n, 36310 Vigo, Spain
| | - Leonardo Bruno
- Dipartimento di Biologia, Ecologia e Scienza della Terra, Università della Calabria (DiBEST-UNICAL), 87036 Arcavacata di Rende, Italy
| | - Carla Díaz-Tielas
- Departmento de Bioloxía Vexetal e Ciencia do Solo, Facultade de Bioloxía, Universidade de Vigo, Campus Lagoas-Marcosende s/n, 36310 Vigo, Spain
| | - Antonio Lupini
- Dipartimento Agraria, Università Mediterranea di Reggio Calabria, 89124 Reggio Calabria, Italy
| | - Meriem Miyassa Aci
- Dipartimento Agraria, Università Mediterranea di Reggio Calabria, 89124 Reggio Calabria, Italy
| | - Emanuela Talarico
- Dipartimento di Biologia, Ecologia e Scienza della Terra, Università della Calabria (DiBEST-UNICAL), 87036 Arcavacata di Rende, Italy
| | - Maria Letizia Madeo
- Dipartimento di Biologia, Ecologia e Scienza della Terra, Università della Calabria (DiBEST-UNICAL), 87036 Arcavacata di Rende, Italy
| | - Antonella Muto
- Dipartimento di Biologia, Ecologia e Scienza della Terra, Università della Calabria (DiBEST-UNICAL), 87036 Arcavacata di Rende, Italy
| | - Adela M. Sánchez-Moreiras
- Departmento de Bioloxía Vexetal e Ciencia do Solo, Facultade de Bioloxía, Universidade de Vigo, Campus Lagoas-Marcosende s/n, 36310 Vigo, Spain
| | - Fabrizio Araniti
- Dipartimento di Scienze Agrarie e Ambientali—Produzione, Territorio, Agroenergia, Università Statale di Milano, Via Celoria n°2, 20133 Milano, Italy
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13
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Scientific basis for the use of minimally processed homogenates of Kappaphycus alvarezii (red) and Sargassum wightii (brown) seaweeds as crop biostimulants. ALGAL RES 2023. [DOI: 10.1016/j.algal.2023.102969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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14
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Choi SJ, Lee Z, Kim S, Jeong E, Shim JS. Modulation of lignin biosynthesis for drought tolerance in plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1116426. [PMID: 37152118 PMCID: PMC10157170 DOI: 10.3389/fpls.2023.1116426] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 04/06/2023] [Indexed: 05/09/2023]
Abstract
Lignin is a complex polymer that is embedded in plant cell walls to provide physical support and water protection. For these reasons, the production of lignin is closely linked with plant adaptation to terrestrial regions. In response to developmental cues and external environmental conditions, plants use an elaborate regulatory network to determine the timing and location of lignin biosynthesis. In this review, we summarize the canonical lignin biosynthetic pathway and transcriptional regulatory network of lignin biosynthesis, consisting of NAC and MYB transcription factors, to explain how plants regulate lignin deposition under drought stress. Moreover, we discuss how the transcriptional network can be applied to the development of drought tolerant plants.
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15
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Vlaminck L, De Rouck B, Desmet S, Van Gerrewey T, Goeminne G, De Smet L, Storme V, Kyndt T, Demeestere K, Gheysen G, Inzé D, Vanholme B, Depuydt S. Opposing effects of trans- and cis-cinnamic acid during rice coleoptile elongation. PLANT DIRECT 2022; 6:e465. [PMID: 36545006 PMCID: PMC9763633 DOI: 10.1002/pld3.465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Revised: 10/29/2022] [Accepted: 11/01/2022] [Indexed: 06/17/2023]
Abstract
The phenylpropanoid cinnamic acid (CA) is a plant metabolite that can occur under a trans- or cis-form. In contrast to the proven bioactivity of the cis-form (c-CA), the activity of trans-CA (t-CA) is still a matter of debate. We tested both compounds using a submerged rice coleoptile assay and demonstrated that they have opposite effects on cell elongation. Notably, in the tip of rice coleoptile t-CA showed an inhibiting and c-CA a stimulating activity. By combining transcriptomics and (untargeted) metabolomics with activity assays and genetic and pharmacological experiments, we aimed to explain the underlying mechanistic processes. We propose a model in which c-CA treatment activates proton pumps and stimulates acidification of the apoplast, which in turn leads to the loosening of the cell wall, necessary for elongation. We hypothesize that c-CA also inactivates auxin efflux transporters, which might cause a local auxin accumulation in the tip of the coleoptile. For t-CA, the phenotype can partially be explained by a stimulation of cell wall polysaccharide feruloylation, leading to a more rigid cell wall. Metabolite profiling also demonstrated that salicylic acid (SA) derivatives are increased upon t-CA treatment. As SA is a known antagonist of auxin, the shift in SA homeostasis provides an additional explanation of the observed t-CA-mediated restriction on cell growth.
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Affiliation(s)
- Lena Vlaminck
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
- Laboratory of Plant Growth AnalysisGhent University Global CampusIncheonSouth Korea
| | - Brix De Rouck
- Laboratory of Plant Growth AnalysisGhent University Global CampusIncheonSouth Korea
| | | | - Thijs Van Gerrewey
- Laboratory of Plant Growth AnalysisGhent University Global CampusIncheonSouth Korea
| | | | - Lien De Smet
- Department of BiotechnologyGhent UniversityGhentBelgium
| | - Veronique Storme
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
| | - Tina Kyndt
- Department of BiotechnologyGhent UniversityGhentBelgium
| | - Kristof Demeestere
- Department of Green Chemistry and TechnologyGhent UniversityGhentBelgium
| | | | - Dirk Inzé
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
| | - Bartel Vanholme
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
| | - Stephen Depuydt
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
- Laboratory of Plant Growth AnalysisGhent University Global CampusIncheonSouth Korea
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16
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Isayenka I, Beaudoin N. The Streptomyces scabiei Pathogenicity Factor Thaxtomin A Induces the Production of Phenolic Compounds in Potato Tubers. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11233216. [PMID: 36501257 PMCID: PMC9737112 DOI: 10.3390/plants11233216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/15/2022] [Accepted: 11/23/2022] [Indexed: 05/27/2023]
Abstract
The phytotoxin thaxtomin A (TA) is the key pathogenicity factor synthesized by the bacteria Streptomyces scabiei, the main causal agent of common scab of potato (Solanum tuberosum L.). TA treatment of potato tuber flesh produces a brown color that was attributed to necrosis. The intensity of TA-induced browning was generally thought to correlate with potato sensitivity to the disease. In this study, we found that TA-induced browning was much more intense in the potato tuber flesh of the common scab moderately resistant variety Russet Burbank (RB) than that observed in tubers of the disease-susceptible variety Yukon Gold (YG). However, there was no significant difference in the level of TA-induced cell death detected in both varieties, suggesting that tubers response to TA does not correlate with the level of sensitivity to common scab. TA-treated potato tuber tissues accumulated significantly higher levels of phenolic compounds than untreated controls, with a higher phenol content detected in RB TA-treated tissues than in those of YG. Browning was associated with a significant induction of the expression of genes of the phenylpropanoid pathway in RB tubers, indicating that TA activated this metabolic pathway. These results suggest that tuber flesh browning induced by TA is due to the accumulation of phenolic compounds. These phenolics may play a role in the protection of potato tubers against S. scabiei.
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17
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Ferreira SS, Goeminne G, Simões MS, Pina AVDA, Lima LGAD, Pezard J, Gutiérrez A, Rencoret J, Mortimer JC, Del Río JC, Boerjan W, Cesarino I. Transcriptional and metabolic changes associated with internode development and reduced cinnamyl alcohol dehydrogenase activity in sorghum. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:6307-6333. [PMID: 35788296 DOI: 10.1093/jxb/erac300] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 07/04/2022] [Indexed: 06/15/2023]
Abstract
The molecular mechanisms associated with secondary cell wall (SCW) deposition in sorghum remain largely uncharacterized. Here, we employed untargeted metabolomics and large-scale transcriptomics to correlate changes in SCW deposition with variation in global gene expression profiles and metabolite abundance along an elongating internode of sorghum, with a major focus on lignin and phenolic metabolism. To gain deeper insight into the metabolic and transcriptional changes associated with pathway perturbations, a bmr6 mutant [with reduced cinnamyl alcohol dehydrogenase (CAD) activity] was analyzed. In the wild type, internode development was accompanied by an increase in the content of oligolignols, p-hydroxybenzaldehyde, hydroxycinnamate esters, and flavonoid glucosides, including tricin derivatives. We further identified modules of genes whose expression pattern correlated with SCW deposition and the accumulation of these target metabolites. Reduced CAD activity resulted in the accumulation of hexosylated forms of hydroxycinnamates (and their derivatives), hydroxycinnamaldehydes, and benzenoids. The expression of genes belonging to one specific module in our co-expression analysis correlated with the differential accumulation of these compounds and contributed to explaining this metabolic phenotype. Metabolomics and transcriptomics data further suggested that CAD perturbation activates distinct detoxification routes in sorghum internodes. Our systems biology approach provides a landscape of the metabolic and transcriptional changes associated with internode development and with reduced CAD activity in sorghum.
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Affiliation(s)
- Sávio Siqueira Ferreira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, São Paulo, Brazil
| | - Geert Goeminne
- VIB Center for Plant Systems Biology, Ghent, Belgium
- VIB Metabolomics Core, Ghent, Belgium
| | - Marcella Siqueira Simões
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, São Paulo, Brazil
| | | | | | - Jade Pezard
- Joint BioEnergy Institute, Emeryville, CA, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida de la Reina Mercedes, Seville, Spain
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida de la Reina Mercedes, Seville, Spain
| | - Jenny C Mortimer
- Joint BioEnergy Institute, Emeryville, CA, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - José C Del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida de la Reina Mercedes, Seville, Spain
| | - Wout Boerjan
- VIB Center for Plant Systems Biology, Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
| | - Igor Cesarino
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, São Paulo, Brazil
- Synthetic and Systems Biology Center, InovaUSP, Avenida Professor Lucio Martins Rodrigues, São Paulo, Brazil
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18
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Yang S, de Haan M, Mayer J, Janacek DP, Hammes UZ, Poppenberger B, Sieberer T. A novel chemical inhibitor of polar auxin transport promotes shoot regeneration by local enhancement of HD-ZIP III transcription. THE NEW PHYTOLOGIST 2022; 235:1111-1128. [PMID: 35491431 DOI: 10.1111/nph.18196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 04/21/2022] [Indexed: 06/14/2023]
Abstract
De novo shoot organogenesis is a prerequisite for numerous applications in plant research and breeding but is often a limiting factor, for example, in genome editing approaches. Class III homeodomain-leucine zipper (HD-ZIP III) transcription factors have been characterized as crucial regulators of shoot specification, however up-stream components controlling their activity during shoot regeneration are only partially identified. In a chemical genetic screen, we isolated ZIC2, a novel activator of HD-ZIP III activity. Using molecular, physiological and hormone transport analyses in Arabidopsis and sunflower (Helianthus annuus), we examined the molecular mechanism by which the drug promotes HD-ZIP III expression. ZIC2-dependent upregulation of HD-ZIP III transcription promotes shoot regeneration in Arabidopsis and is accompanied by the induction of shoot specifying factors WUS and RAP2.6L and a subset of cytokinin biosynthesis enzymes. ZIC2's effect on HD-ZIP III expression and regeneration is based on its ability to limit polar auxin transport. We further provide evidence that chemical modulation of auxin efflux can enhance de novo shoot formation in the regeneration recalcitrant species sunflower. Activation of HD-ZIP III transcription during shoot regeneration depends on the local distribution of auxin and chemical modulation of auxin transport can be used to overcome poor shoot organogenesis in tissue culture.
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Affiliation(s)
- Saiqi Yang
- Research Unit Plant Growth Regulation, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Marjolein de Haan
- Research Unit Plant Growth Regulation, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Julius Mayer
- Research Unit Plant Growth Regulation, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Dorina P Janacek
- Plant Systems Biology, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Ulrich Z Hammes
- Plant Systems Biology, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Brigitte Poppenberger
- Biotechnology of Horticultural Crops, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Tobias Sieberer
- Research Unit Plant Growth Regulation, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
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19
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Hu S, Kamimura N, Sakamoto S, Nagano S, Takata N, Liu S, Goeminne G, Vanholme R, Uesugi M, Yamamoto M, Hishiyama S, Kim H, Boerjan W, Ralph J, Masai E, Mitsuda N, Kajita S. Rerouting of the lignin biosynthetic pathway by inhibition of cytosolic shikimate recycling in transgenic hybrid aspen. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 110:358-376. [PMID: 35044002 DOI: 10.1111/tpj.15674] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 01/10/2022] [Indexed: 06/14/2023]
Abstract
Lignin is a phenolic polymer deposited in the plant cell wall, and is mainly polymerized from three canonical monomers (monolignols), i.e. p-coumaryl, coniferyl and sinapyl alcohols. After polymerization, these alcohols form different lignin substructures. In dicotyledons, monolignols are biosynthesized from phenylalanine, an aromatic amino acid. Shikimate acts at two positions in the route to the lignin building blocks. It is part of the shikimate pathway that provides the precursor for the biosynthesis of phenylalanine, and is involved in the transesterification of p-coumaroyl-CoA to p-coumaroyl shikimate, one of the key steps in the biosynthesis of coniferyl and sinapyl alcohols. The shikimate residue in p-coumaroyl shikimate is released in later steps, and the resulting shikimate becomes available again for the biosynthesis of new p-coumaroyl shikimate molecules. In this study, we inhibited cytosolic shikimate recycling in transgenic hybrid aspen by accelerated phosphorylation of shikimate in the cytosol through expression of a bacterial shikimate kinase (SK). This expression elicited an increase in p-hydroxyphenyl units of lignin and, by contrast, a decrease in guaiacyl and syringyl units. Transgenic plants with high SK activity produced a lignin content comparable to that in wild-type plants, and had an increased processability via enzymatic saccharification. Although expression of many genes was altered in the transgenic plants, elevated SK activity did not exert a significant effect on the expression of the majority of genes responsible for lignin biosynthesis. The present results indicate that cytosolic shikimate recycling is crucial to the monomeric composition of lignin rather than for lignin content.
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Affiliation(s)
- Shi Hu
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Naofumi Kamimura
- Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Japan
| | - Shingo Sakamoto
- Plant Gene Regulation Research Group, Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
- Smart CO2 Utilization Research Team, Global Zero Emission Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
| | - Soichiro Nagano
- Forest Tree Breeding Center, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Hitachi, Ibaraki, Japan
| | - Naoki Takata
- Forest Bio-Research Center, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Hitachi, Ibaraki, Japan
| | - Sarah Liu
- Department of Biochemistry, and US Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, Wisconsin, USA
| | - Geert Goeminne
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Ruben Vanholme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Metabolomics Core Ghent, VIB, Ghent, Belgium
| | - Mikiko Uesugi
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Masanobu Yamamoto
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Shojiro Hishiyama
- Department of Forest Resource Chemistry, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Tsukuba, Japan
| | - Hoon Kim
- Department of Biochemistry, and US Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, Wisconsin, USA
| | - Wout Boerjan
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - John Ralph
- Department of Biochemistry, and US Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, Wisconsin, USA
| | - Eiji Masai
- Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Japan
| | - Nobutaka Mitsuda
- Plant Gene Regulation Research Group, Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
- Smart CO2 Utilization Research Team, Global Zero Emission Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
| | - Shinya Kajita
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
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20
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Suzuki T, Kuruma M, Seto Y. A New Series of Strigolactone Analogs Derived From Cinnamic Acids as Germination Inducers for Root Parasitic Plants. FRONTIERS IN PLANT SCIENCE 2022; 13:843362. [PMID: 35422835 PMCID: PMC9002265 DOI: 10.3389/fpls.2022.843362] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Accepted: 03/07/2022] [Indexed: 06/14/2023]
Abstract
Root parasitic plants such as Striga and Orobanche cause significant damage on crop production, particularly in sub-Saharan Africa. Their seeds germinate by sensing host root-derived signaling molecules called strigolactones (SLs). SL mimics can be used as suicidal germination inducers for root parasitic plants. Previous attempts to develop such chemicals have revealed that the methylbutenolide ring (D-ring), a common substructure in all the naturally occurring SLs, is critical for SL agonistic activity, suggesting that it should be possible to generate new SL mimics simply by coupling a D-ring with another molecule. Because structural information regarding SLs and their receptor interaction is still limited, such an approach might be an effective strategy to develop new potent SL agonists. Here, we report development of a series of new SL analogs derived from cinnamic acid (CA), the basis of a class of phenylpropanoid natural products that occur widely in plants. CA has an aromatic ring and a double-bond side-chain structure, which are advantageous for preparing structurally diverse derivatives. We prepared SL analogs from cis and trans configuration CA, and found that all the cis-CA-derived SL analogs had stronger activities as seed germination inducers for the root parasitic plants, Orobanche minor and Striga hermonthica, compared with the corresponding trans-CA-derived analogs. Moreover, introduction of a substitution at the C-4 position increased the germination-stimulating activity. We also found that the SL analogs derived from cis-CA were able to interact directly with SL receptor proteins more effectively than the analogs derived from trans-CA. The cis isomer of CA was previously reported to have a growth promoting effect on non-parasitic plants such as Arabidopsis. We found that SL analogs derived from cis-CA also showed growth promoting activity toward Arabidopsis, suggesting that these new SL agonists might be useful not only as suicidal germination inducers for root parasitic weeds, but also as plant growth promoters for the host plants.
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21
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Durán-Medina Y, Ruiz-Cortés BE, Guerrero-Largo H, Marsch-Martínez N. Specialized metabolism and development: An unexpected friendship. CURRENT OPINION IN PLANT BIOLOGY 2021; 64:102142. [PMID: 34856480 DOI: 10.1016/j.pbi.2021.102142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 10/12/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
Plants produce a myriad of metabolites. Some of them have been regarded for a long time as secondary or specialized metabolites and are considered to have functions mostly in defense and the adaptation of plants to their environment. However, in the last years, new research has shown that these metabolites can also have roles in the regulation of plant growth and development, some acting as signals, through the interaction with hormonal pathways, and some independently of them. These reports provide a glimpse of the functional possibilities that specialized metabolites present in the modulation of plant development and encourage more research in this direction.
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Affiliation(s)
- Yolanda Durán-Medina
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico
| | - Beatriz Esperanza Ruiz-Cortés
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico
| | - Herenia Guerrero-Largo
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico
| | - Nayelli Marsch-Martínez
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico.
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22
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Lacek J, García-González J, Weckwerth W, Retzer K. Lessons Learned from the Studies of Roots Shaded from Direct Root Illumination. Int J Mol Sci 2021; 22:12784. [PMID: 34884591 PMCID: PMC8657594 DOI: 10.3390/ijms222312784] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 11/22/2021] [Accepted: 11/24/2021] [Indexed: 11/16/2022] Open
Abstract
The root is the below-ground organ of a plant, and it has evolved multiple signaling pathways that allow adaptation of architecture, growth rate, and direction to an ever-changing environment. Roots grow along the gravitropic vector towards beneficial areas in the soil to provide the plant with proper nutrients to ensure its survival and productivity. In addition, roots have developed escape mechanisms to avoid adverse environments, which include direct illumination. Standard laboratory growth conditions for basic research of plant development and stress adaptation include growing seedlings in Petri dishes on medium with roots exposed to light. Several studies have shown that direct illumination of roots alters their morphology, cellular and biochemical responses, which results in reduced nutrient uptake and adaptability upon additive stress stimuli. In this review, we summarize recent methods that allow the study of shaded roots under controlled laboratory conditions and discuss the observed changes in the results depending on the root illumination status.
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Affiliation(s)
- Jozef Lacek
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague, Czech Republic; (J.L.); (J.G.-G.)
- Department of Experimental Plant Biology, Faculty of Science, Charles University, 128 00 Prague, Czech Republic
| | - Judith García-González
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague, Czech Republic; (J.L.); (J.G.-G.)
- Department of Experimental Plant Biology, Faculty of Science, Charles University, 128 00 Prague, Czech Republic
| | - Wolfram Weckwerth
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), Faculty of Life Sciences, University of Vienna, Djerassiplatz 1, 1030 Wien, Austria;
- Vienna Metabolomics Center (VIME), University of Vienna, Djerassiplatz 1, 1030 Wien, Austria
| | - Katarzyna Retzer
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague, Czech Republic; (J.L.); (J.G.-G.)
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23
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Morpho-Anatomical and Biochemical Characterization of Embryogenic and Degenerative Embryogenic Calli of Phoenix dactylifera L. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7100393] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The study of morpho-anatomical aspects, metabolic changes of proteins, antioxidant substances, as well as phenolic compounds in embryogenic callus (EC) and degenerative embryogenic callus (DEC) was the aim of the present investigation. Ability to form somatic embryos (SEs) was associated with the softness of the EC, which exhibited a white or creamy color and was composed of isodiametric cells containing dense cytoplasm, conspicuous nuclei and minimal vacuoles with observed mitotic activity. Furthermore, protein, reduced glutathione (GSH) and ascorbic acid (ASC) concentrations and the ratio between ASC and dehydroascorborbic acid (DHA) were increased significantly in the EC in comparison to the DEC. In addition, the phenolic extract of the EC was proved to have higher scavenging activity than the extract from the DEC. A loss of embryogenic competence in the DEC was correlated with the presence of more rigid clumps and such calli had a yellowish to brown color and no cell division could be observed in the cells of such aggregates as the cells had large vacuoles and they have very thick walls. Moreover, these morphological and anatomical observations of the DEC were accompanied by accumulations of the oxidized form of ascorbic acid (DHA), H2O2, total soluble phenolic compounds and overaccumulation of naringenin. Alternations in cellular metabolism can affect and regulate the morphogenesis of somatic embryos.
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24
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Santos Wagner AL, Araniti F, Bruno L, Ishii-Iwamoto EL, Abenavoli MR. The Steroid Saponin Protodioscin Modulates Arabidopsis thaliana Root Morphology Altering Auxin Homeostasis, Transport and Distribution. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10081600. [PMID: 34451648 PMCID: PMC8399103 DOI: 10.3390/plants10081600] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 07/20/2021] [Accepted: 07/29/2021] [Indexed: 06/13/2023]
Abstract
To date, synthetic herbicides are the main tools used for weed control, with consequent damage to both the environment and human health. In this respect, searching for new natural molecules and understanding their mode of action could represent an alternative strategy or support to traditional management methods for sustainable agriculture. Protodioscin is a natural molecule belonging to the class of steroid saponins, mainly produced by monocotyledons. In the present paper, protodioscin's phytotoxic potential was assessed to identify its target and the potential mode of action in the model plant Arabidopsis thaliana. The results highlighted that the root system was the main target of protodioscin, which caused a high inhibitory effect on the primary root length (ED50 50 μM) with morphological alteration, accompanied by a significant increase in the lateral root number and root hair density. Through a pharmacological and microscopic approach, it was underlined that this saponin modified both auxin distribution and transport, causing an auxin accumulation in the region of root maturation and an alteration of proteins responsible for the auxin efflux (PIN2). In conclusion, the saponin protodioscin can modulate the root system of A. thaliana by interfering with the auxin transport (PAT).
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Affiliation(s)
- Ana Luiza Santos Wagner
- Laboratory of Biological Oxidations, Department of Biochemistry, State University of Maringa, Maringa 87020900, Brazil;
| | - Fabrizio Araniti
- Department of Agricultural and Environmental Sciences (DISAA), University of Milan, Via Celoria, 20133 Milano, Italy;
| | - Leonardo Bruno
- Department of Biology, Ecology and Soil Science, University of Calabria, Arcavacata di Rende (CS), 87036 Arcavacata di Rende, Italy;
| | - Emy Luiza Ishii-Iwamoto
- Laboratory of Biological Oxidations, Department of Biochemistry, State University of Maringa, Maringa 87020900, Brazil;
| | - Maria Rosa Abenavoli
- Department of Agriculture, University of Reggio di Calabria, 89124 Reggio Calabria, Italy
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25
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El Houari I, Van Beirs C, Arents HE, Han H, Chanoca A, Opdenacker D, Pollier J, Storme V, Steenackers W, Quareshy M, Napier R, Beeckman T, Friml J, De Rybel B, Boerjan W, Vanholme B. Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport. THE NEW PHYTOLOGIST 2021; 230:2275-2291. [PMID: 33728703 DOI: 10.1111/nph.17349] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 03/06/2021] [Indexed: 05/20/2023]
Abstract
The phenylpropanoid pathway serves a central role in plant metabolism, providing numerous compounds involved in diverse physiological processes. Most carbon entering the pathway is incorporated into lignin. Although several phenylpropanoid pathway mutants show seedling growth arrest, the role for lignin in seedling growth and development is unexplored. We use complementary pharmacological and genetic approaches to block CINNAMATE-4-HYDROXYLASE (C4H) functionality in Arabidopsis seedlings and a set of molecular and biochemical techniques to investigate the underlying phenotypes. Blocking C4H resulted in reduced lateral rooting and increased adventitious rooting apically in the hypocotyl. These phenotypes coincided with an inhibition in AUX transport. The upstream accumulation in cis-cinnamic acid was found to be likely to cause polar AUX transport inhibition. Conversely, a downstream depletion in lignin perturbed phloem-mediated AUX transport. Restoring lignin deposition effectively reestablished phloem transport and, accordingly, AUX homeostasis. Our results show that the accumulation of bioactive intermediates and depletion in lignin jointly cause the aberrant phenotypes upon blocking C4H, and demonstrate that proper deposition of lignin is essential for the establishment of AUX distribution in seedlings. Our data position the phenylpropanoid pathway and lignin in a new physiological framework, consolidating their importance in plant growth and development.
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Affiliation(s)
- Ilias El Houari
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Caroline Van Beirs
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Helena E Arents
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Huibin Han
- Institute of Science and Technology (IST) Austria, Klosterneuburg, 3400, Austria
| | - Alexandra Chanoca
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Davy Opdenacker
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Jacob Pollier
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Metabolomics Core, Ghent, 9052, Belgium
| | - Véronique Storme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Ward Steenackers
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Mussa Quareshy
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
| | - Richard Napier
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
| | - Tom Beeckman
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Jiří Friml
- Institute of Science and Technology (IST) Austria, Klosterneuburg, 3400, Austria
| | - Bert De Rybel
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Wout Boerjan
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
| | - Bartel Vanholme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, Ghent, B-9052, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, Ghent, B-9052, Belgium
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Abstract
Molecular genetic and structural studies have revealed the mechanisms of fundamental components of key auxin regulatory pathways consisting of auxin biosynthesis, transport, and signaling. Chemical biology methods applied in auxin research have been greatly expanded through the understanding of auxin regulatory pathways. Many small-molecule modulators of auxin metabolism, transport, and signaling have been generated on the basis of the outcomes of genetic and structural studies on auxin regulatory pathways. These chemical modulators are now widely used as essential tools for dissecting auxin biology in diverse plants. This review covers the structures, primary targets, modes of action, and applications of chemical tools in auxin biosynthesis, transport, and signaling.
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Affiliation(s)
- Ken-Ichiro Hayashi
- Department of Biochemistry, Okayama University of Science, Okayama City 700-0005, Japan
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27
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Venegas-Molina J, Molina-Hidalgo FJ, Clicque E, Goossens A. Why and How to Dig into Plant Metabolite-Protein Interactions. TRENDS IN PLANT SCIENCE 2021; 26:472-483. [PMID: 33478816 DOI: 10.1016/j.tplants.2020.12.008] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 12/08/2020] [Accepted: 12/14/2020] [Indexed: 06/12/2023]
Abstract
Interaction between metabolites and proteins drives cellular regulatory processes within and between organisms. Recent reports highlight that numerous plant metabolites embrace multiple biological activities, beyond a sole role as substrates, products, or cofactors of enzymes, or as defense or growth-regulatory compounds. Though several technologies have been developed to identify and characterize metabolite-protein interactions, the systematic implementation of such methods in the plant field remains limited. Here, we discuss the plant metabolic space, with a specific focus on specialized metabolites and their roles, and review the technologies to study their interaction with proteins. We approach it both from a plant's perspective, to increase our understanding of plant metabolite-dependent regulatory networks, and from a human perspective, to empower agrochemical and drug discoveries.
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Affiliation(s)
- Jhon Venegas-Molina
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium; VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Francisco J Molina-Hidalgo
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium; VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Elke Clicque
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium; VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Alain Goossens
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium; VIB Center for Plant Systems Biology, Ghent, Belgium.
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28
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Kim JI, Hidalgo-Shrestha C, Bonawitz ND, Franke RB, Chapple C. Spatio-temporal control of phenylpropanoid biosynthesis by inducible complementation of a cinnamate 4-hydroxylase mutant. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:3061-3073. [PMID: 33585900 DOI: 10.1093/jxb/erab055] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 02/04/2021] [Indexed: 06/12/2023]
Abstract
Cinnamate 4-hydroxylase (C4H) is a cytochrome P450-dependent monooxygenase that catalyzes the second step of the general phenylpropanoid pathway. Arabidopsis reduced epidermal fluorescence 3 (ref3) mutants, which carry hypomorphic mutations in C4H, exhibit global alterations in phenylpropanoid biosynthesis and have developmental abnormalities including dwarfing. Here we report the characterization of a conditional Arabidopsis C4H line (ref3-2pOpC4H), in which wild-type C4H is expressed in the ref3-2 background. Expression of C4H in plants with well-developed primary inflorescence stems resulted in restoration of fertility and the production of substantial amounts of lignin, revealing that the developmental window for lignification is remarkably plastic. Following induction of C4H expression in ref3-2pOpC4H, we observed rapid and significant reductions in the levels of numerous metabolites, including several benzoyl and cinnamoyl esters and amino acid conjugates. These atypical conjugates were quickly replaced with their sinapoylated equivalents, suggesting that phenolic esters are subjected to substantial amounts of turnover in wild-type plants. Furthermore, using localized application of dexamethasone to ref3-2pOpC4H, we show that phenylpropanoids are not transported appreciably from their site of synthesis. Finally, we identified a defective Casparian strip diffusion barrier in the ref3-2 mutant root endodermis, which is restored by induction of C4H expression.
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Affiliation(s)
- Jeong Im Kim
- Department of Biochemistry, Purdue University, West Lafayette, IN, USA
- The Center for Direct Catalytic Conversion of Biomass to Biofuels (C3Bio), Discovery Park, Purdue University, West Lafayette, IN, USA
| | | | | | - Rochus B Franke
- Institute of Cellular and Molecular Botany, University of Bonn, Bonn, Germany
| | - Clint Chapple
- Department of Biochemistry, Purdue University, West Lafayette, IN, USA
- The Center for Direct Catalytic Conversion of Biomass to Biofuels (C3Bio), Discovery Park, Purdue University, West Lafayette, IN, USA
- Center for Plant Biology, Purdue University, West Lafayette, IN, USA
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29
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El Houari I, Boerjan W, Vanholme B. Behind the Scenes: The Impact of Bioactive Phenylpropanoids on the Growth Phenotypes of Arabidopsis Lignin Mutants. FRONTIERS IN PLANT SCIENCE 2021; 12:734070. [PMID: 34567045 PMCID: PMC8458929 DOI: 10.3389/fpls.2021.734070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 08/02/2021] [Indexed: 05/20/2023]
Abstract
The phenylpropanoid pathway converts the aromatic amino acid phenylalanine into a wide range of secondary metabolites. Most of the carbon entering the pathway incorporates into the building blocks of lignin, an aromatic polymer providing mechanical strength to plants. Several intermediates in the phenylpropanoid pathway serve as precursors for distinct classes of metabolites that branch out from the core pathway. Untangling this metabolic network in Arabidopsis was largely done using phenylpropanoid pathway mutants, all with different degrees of lignin depletion and associated growth defects. The phenotypic defects of some phenylpropanoid pathway mutants have been attributed to differentially accumulating phenylpropanoids or phenylpropanoid-derived compounds. In this perspectives article, we summarize and discuss the reports describing an altered accumulation of these bioactive molecules as the causal factor for the phenotypes of lignin mutants in Arabidopsis.
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Affiliation(s)
- Ilias El Houari
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Wout Boerjan
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Bartel Vanholme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
- *Correspondence: Bartel Vanholme,
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30
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Halim MA, Rahman MM, Megharaj M, Naidu R. Cadmium Immobilization in the Rhizosphere and Plant Cellular Detoxification: Role of Plant-Growth-Promoting Rhizobacteria as a Sustainable Solution. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:13497-13529. [PMID: 33170689 DOI: 10.1021/acs.jafc.0c04579] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Food is the major cadmium (Cd)-exposure pathway from agricultural soils to humans and other living entities and must be reduced in an effective way. A plant can select beneficial microbes, like plant-growth-promoting rhizobacteria (PGPR), depending upon the nature of root exudates in the rhizosphere, for its own benefits, such as plant growth promotion as well as protection from metal toxicity. This review intends to seek out information on the rhizo-immobilization of Cd in polluted soils using the PGPR along with plant nutrient fertilizers. This review suggests that the rhizo-immobilization of Cd by a combination of PGPR and nanohybrid-based plant nutrient fertilizers would be a potential and sustainable technology for phytoavailable Cd immobilization in the rhizosphere and plant cellular detoxification, by keeping the plant nutrition flow and green dynamics of plant nutrition and boosting the plant growth and development under Cd stress.
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Affiliation(s)
- Md Abdul Halim
- Global Centre for Environmental Remediation (GCER), The University of Newcastle, Callaghan, New South Wales 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), The University of Newcastle, Callaghan, New South Wales 2308, Australia
- Department of Biotechnology, Sher-e-Bangla Agricultural University, Dhaka 1207, Bangladesh
| | - Mohammad Mahmudur Rahman
- Global Centre for Environmental Remediation (GCER), The University of Newcastle, Callaghan, New South Wales 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), The University of Newcastle, Callaghan, New South Wales 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Ravi Naidu
- Global Centre for Environmental Remediation (GCER), The University of Newcastle, Callaghan, New South Wales 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), The University of Newcastle, Callaghan, New South Wales 2308, Australia
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31
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Olivares-García CA, Mata-Rosas M, Peña-Montes C, Quiroz-Figueroa F, Segura-Cabrera A, Shannon LM, Loyola-Vargas VM, Monribot-Villanueva JL, Elizalde-Contreras JM, Ibarra-Laclette E, Ramirez-Vázquez M, Guerrero-Analco JA, Ruiz-May E. Phenylpropanoids Are Connected to Cell Wall Fortification and Stress Tolerance in Avocado Somatic Embryogenesis. Int J Mol Sci 2020; 21:ijms21165679. [PMID: 32784357 PMCID: PMC7460882 DOI: 10.3390/ijms21165679] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Revised: 08/02/2020] [Accepted: 08/03/2020] [Indexed: 12/13/2022] Open
Abstract
Somatic embryogenesis (SE) is a valuable model for understanding the mechanism of plant embryogenesis and a tool for the mass production of plants. However, establishing SE in avocado has been complicated due to the very low efficiency of embryo induction and plant regeneration. To understand the molecular foundation of the SE induction and development in avocado, we compared embryogenic (EC) and non-embryogenic (NEC) cultures of two avocado varieties using proteomic and metabolomic approaches. Although Criollo and Hass EC exhibited similarities in the proteome and metabolome profile, in general, we observed a more active phenylpropanoid pathway in EC than NEC. This pathway is associated with the tolerance of stress responses, probably through the reinforcement of the cell wall and flavonoid production. We could corroborate that particular polyphenolics compounds, including p-coumaric acid and t-ferulic acid, stimulated the production of somatic embryos in avocado. Exogen phenolic compounds were associated with the modification of the content of endogenous polyphenolic and the induction of the production of the putative auxin-a, adenosine, cellulose and 1,26-hexacosanediol-diferulate. We suggest that in EC of avocado, there is an enhanced phenylpropanoid metabolism for the production of the building blocks of lignin and flavonoid compounds having a role in cell wall reinforcement for tolerating stress response. Data are available at ProteomeXchange with the identifier PXD019705.
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Affiliation(s)
- Carol A. Olivares-García
- Red de Manejo Biotecnológico de Recursos, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (C.A.O.-G.); (M.M.-R.)
- Tecnológico Nacional de México, Instituto Tecnológico de Veracruz, Unidad de Investigación y Desarrollo en Alimentos, Veracruz CP 91897, Mexico
| | - Martín Mata-Rosas
- Red de Manejo Biotecnológico de Recursos, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (C.A.O.-G.); (M.M.-R.)
| | - Carolina Peña-Montes
- Tecnológico Nacional de México, Instituto Tecnológico de Veracruz, Unidad de Investigación y Desarrollo en Alimentos, Veracruz CP 91897, Mexico
- Correspondence: (C.P.-M.); (E.R.-M.)
| | - Francisco Quiroz-Figueroa
- Instituto Politécnico Nacional, Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional-Unidad Sinaloa, Boulevard Juan de Dios Bátiz Paredes # 250, Col. San Joachin, Guasave, Sinaloa 81101, Mexico;
| | - Aldo Segura-Cabrera
- European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK;
| | - Laura M. Shannon
- Department of Horticultural Science, University of Minnesota, Saint Paul, MN 55108, USA;
| | - Victor M. Loyola-Vargas
- Unidad de Bioquímica y Biología Molecular de Plantas, Centro de Investigación Científica de Yucatán, Mérida, Yucatán CP 97205, Mexico;
| | - Juan L. Monribot-Villanueva
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (J.L.M.-V.); (J.M.E.-C.); (E.I.-L.); (M.R.-V.); (J.A.G.-A.)
| | - Jose M. Elizalde-Contreras
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (J.L.M.-V.); (J.M.E.-C.); (E.I.-L.); (M.R.-V.); (J.A.G.-A.)
| | - Enrique Ibarra-Laclette
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (J.L.M.-V.); (J.M.E.-C.); (E.I.-L.); (M.R.-V.); (J.A.G.-A.)
| | - Mónica Ramirez-Vázquez
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (J.L.M.-V.); (J.M.E.-C.); (E.I.-L.); (M.R.-V.); (J.A.G.-A.)
| | - José A. Guerrero-Analco
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (J.L.M.-V.); (J.M.E.-C.); (E.I.-L.); (M.R.-V.); (J.A.G.-A.)
| | - Eliel Ruiz-May
- Red de Estudios Moleculares Avanzados, Instituto de Ecología A. C., Cluster BioMimic, Carretera Antigua a Coatepec 351, Congregación el Haya, Xalapa, Veracruz CP 91073, Mexico; (J.L.M.-V.); (J.M.E.-C.); (E.I.-L.); (M.R.-V.); (J.A.G.-A.)
- Correspondence: (C.P.-M.); (E.R.-M.)
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Rodríguez RB, Zapata RL, Salum ML, Erra-Balsells R. Understanding the role played by protic ionic liquids (PILs) and the substituent effect for enhancing the generation of Z-cinnamic acid derivatives†. Photochem Photobiol Sci 2020; 19:819-830. [PMID: 33856671 DOI: 10.1039/d0pp00072h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Accepted: 04/30/2020] [Indexed: 11/21/2022]
Abstract
Photoisomerization of a series of substituted E-cinnamic acids in MeCN in their acid forms and as their corresponding protic ionic liquids (PILs) with light of 300 nm is studied. The nature, strength, number, and position effects of substituents on the photochemical behavior of E-cinnamic derivatives are investigated. The photosensitization of the reaction in the presence of Michler's ketone is also studied at 366 nm and it demonstrates that the triplet-excited state is involved in the reaction. As the presence of n-butylamine needed to form the PILs significantly increases the photoproduct yields in all cases, the role of the PILs is also discussed. Thus, understanding of these fundamental aspects has allowed us to establish an excellent and practical synthetic protocol for successfully synthesizing Z-cinnamic acids.
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Affiliation(s)
- Rocío B Rodríguez
- Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Química Orgánica. Pabellón II, 3er P., Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina
- Design and Chemistry of Macromolecules Group, Institute of Technology in Polymers and Nanotechnology (ITPN), UBA-CONICET, FADU, University of Buenos Aires, Intendente Güiraldes 2160, Pabellón III, subsuelo, Ciudad Universitaria, C1428EGA, Buenos Aires, Argentina
| | - Ramiro L Zapata
- Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Química Orgánica. Pabellón II, 3er P., Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina
| | - María L Salum
- Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Química Orgánica. Pabellón II, 3er P., Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina.
- CONICET, Universidad de Buenos Aires. Centro de Investigación en Hidratos de Carbono (CIHIDECAR). Facultad de Ciencias Exactas y Naturales Pabellón II, 3er P. Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina.
| | - Rosa Erra-Balsells
- Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Química Orgánica. Pabellón II, 3er P., Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina
- CONICET, Universidad de Buenos Aires. Centro de Investigación en Hidratos de Carbono (CIHIDECAR). Facultad de Ciencias Exactas y Naturales Pabellón II, 3er P. Ciudad Universitaria, C1428EHA, Buenos Aires, Argentina
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Shindo M, Makigawa S, Matsumoto K, Iwata T, Wasano N, Kano A, Morita MT, Fujii Y. Essential structural features of (2Z,4E)-5-phenylpenta-2,4-dienoic acid for inhibition of root gravitropism. PHYTOCHEMISTRY 2020; 172:112287. [PMID: 32018089 DOI: 10.1016/j.phytochem.2020.112287] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 01/23/2020] [Accepted: 01/27/2020] [Indexed: 06/10/2023]
Abstract
Previously, we found (2Z,4E)-5-phenylpenta-2,4-dienoic acid (ku-76) to be a selective inhibitor of root gravitropic bending of lettuce radicles at 5 μM, with no concomitant growth inhibition. Here, we describe a structure-activity relationship study of ku-76 to determine the essential structural features for the inhibitory activity. A series of ku-76 analogues was synthesized and the key features of ku-76 that are necessary for inhibition of lettuce root gravitropic bending were determined. The (2E,4E)-, (2Z,4Z)- (2E,4Z)- analogues were inactive, and 4,5-saturated and 4,5-alkynyl analogues also did not show inhibitory activity, demonstrating the importance of the (2Z,4E) diene unit. The aromatic ring was also crucial and could not be replaced with an alkyl chain. Derivatives in which the carboxylic acid was replaced with amides, alcohols, or esters were much less potent. These results suggest that the (2Z,4E)-diene, the carboxylic acid moiety, and the aromatic ring are essential for potent inhibitory activity against gravitropic bending.
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Affiliation(s)
- Mitsuru Shindo
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan.
| | - Saki Makigawa
- Faculty of Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Kenji Matsumoto
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Takayuki Iwata
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Naoya Wasano
- International Environmental and Agricultural Sciences, Tokyo University of Agriculture and Technology, 3-5-8, Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan
| | - Arihiro Kano
- Institute for Materials Chemistry and Engineering, Kyushu University, Kasuga-koen, Kasuga, 816-8580, Japan
| | - Miyo Terao Morita
- Division of Plant Environmental Responses, National Institute for Basic Biology, Nishigonaka 38, Myodaiji, Okazaki, 444-8585, Japan
| | - Yoshiharu Fujii
- International Environmental and Agricultural Sciences, Tokyo University of Agriculture and Technology, 3-5-8, Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan
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Inaji A, Okazawa A, Taguchi T, Nakamoto M, Katsuyama N, Yoshikawa R, Ohnishi T, Waller F, Ohta D. Rhizotaxis Modulation in Arabidopsis Is Induced by Diffusible Compounds Produced during the Cocultivation of Arabidopsis and the Endophytic Fungus Serendipita indica. PLANT & CELL PHYSIOLOGY 2020; 61:838-850. [PMID: 32016405 DOI: 10.1093/pcp/pcaa008] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Accepted: 01/25/2020] [Indexed: 06/10/2023]
Abstract
Rhizotaxis is established under changing environmental conditions via periodic priming of lateral root (LR) initiation at the root tips and adaptive LR formation along the primary root (PR). In contrast to the adaptable LR formation in response to nutrient availability, there is little information on root development during interactions with beneficial microbes. The Arabidopsis root system is characteristically modified upon colonization by the root endophytic fungus Serendipita indica, accompanied by a marked stimulation of LR formation and the inhibition of PR growth. This root system modification has been attributed to endophyte-derived indole-3-acetic acid (IAA). However, it has yet to be clearly explained how fungal IAA affects the intrinsic LR formation process. In this study, we show that diffusible compounds (chemical signals) other than IAA are present in the coculture medium of Arabidopsis and S. indica and induce auxin-responsive DR5::GUS expression in specific sections within the pericycle layer. The DR5::GUS expression was independent of polar auxin transport and the major IAA biosynthetic pathways, implicating unidentified mechanisms responsible for the auxin response and LR formation. Detailed metabolite analysis revealed the presence of multiple compounds that induce local auxin responses and LR formation. We found that benzoic acid (BA) cooperatively acted with exogenous IAA to generate a local auxin response in the pericycle layer, suggesting that BA is one of the chemical signals involved in adaptable LR formation. Identification and characterization of the chemical signals will contribute to a greater understanding of the molecular mechanisms underlying adaptable root development and to unconventional technologies for sustainable agriculture.
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Affiliation(s)
- Aoi Inaji
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
| | - Atsushi Okazawa
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
| | - Taiki Taguchi
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
| | - Masatoshi Nakamoto
- College of Pharmaceutical Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu Shiga, 525-8577 Japan
| | - Nao Katsuyama
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
| | - Ryoka Yoshikawa
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
| | - Toshiyuki Ohnishi
- Graduate School of Agriculture, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529 Japan
- Research Institute of Green Science and Technology, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529 Japan
| | - Frank Waller
- Julius-von-Sachs-Institute, Pharmaceutical Biology, Julius-Maximilians-University Würzburg, Julius-von-Sachs-Platz 2, Würzburg D-97082, Germany
| | - Daisaku Ohta
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
- Bioeconomy Research Institute, Research Center for the 21st Century, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, 599-8531 Japan
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Steenackers W, El Houari I, Baekelandt A, Witvrouw K, Dhondt S, Leroux O, Gonzalez N, Corneillie S, Cesarino I, Inzé D, Boerjan W, Vanholme B. cis-Cinnamic acid is a natural plant growth-promoting compound. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:6293-6304. [PMID: 31504728 PMCID: PMC6859716 DOI: 10.1093/jxb/erz392] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 08/19/2019] [Indexed: 05/20/2023]
Abstract
Agrochemicals provide vast potential to improve plant productivity, because they are easy to implement at low cost while not being restricted by species barriers as compared with breeding strategies. Despite the general interest, only a few compounds with growth-promoting activity have been described so far. Here, we add cis-cinnamic acid (c-CA) to the small portfolio of existing plant growth stimulators. When applied at low micromolar concentrations to Arabidopsis roots, c-CA stimulates both cell division and cell expansion in leaves. Our data support a model explaining the increase in shoot biomass as the consequence of a larger root system, which allows the plant to explore larger areas for resources. The requirement of the cis-configuration for the growth-promoting activity of CA was validated by implementing stable structural analogs of both cis- and trans-CA in this study. In a complementary approach, we used specific light conditions to prevent cis/trans-isomerization of CA during the experiment. In both cases, the cis-form stimulated plant growth, whereas the trans-form was inactive. Based on these data, we conclude that c-CA is an appealing lead compound representing a novel class of growth-promoting agrochemicals. Unraveling the underlying molecular mechanism could lead to the development of innovative strategies for boosting plant biomass.
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Affiliation(s)
- Ward Steenackers
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Ilias El Houari
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Alexandra Baekelandt
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Klaas Witvrouw
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Stijn Dhondt
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | | | - Nathalie Gonzalez
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Sander Corneillie
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Igor Cesarino
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Dirk Inzé
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Wout Boerjan
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
| | - Bartel Vanholme
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Gent, Belgium
- VIB Center for Plant Systems Biology, VIB, Technologiepark 927, Gent, Belgium
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Khan AQ, Li Z, Ahmed MM, Wang P, Zhang X, Tu L. Eriodictyol can modulate cellular auxin gradients to efficiently promote in vitro cotton fibre development. BMC PLANT BIOLOGY 2019; 19:443. [PMID: 31651240 PMCID: PMC6814110 DOI: 10.1186/s12870-019-2054-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 09/25/2019] [Indexed: 05/24/2023]
Abstract
BACKGROUND Flavonoids have essential roles in flower pigmentation, fibre development and disease resistance in cotton. Previous studies show that accumulation of naringenin in developing cotton fibres significantly affects fibre growth. This study focused on determining the effects of the flavonoids naringenin, dihydrokaempferol, dihydroquerectin and eriodictyol on fibre development in an in vitro system. RESULTS 20 μM eriodictyol treatment produced a maximum fibre growth, in terms of fibre length and total fibre units. To gain insight into the associated transcriptional regulatory networks, RNA-seq analysis was performed on eriodictyol-treated elongated fibres, and computational analysis of differentially expressed genes revealed that carbohydrate metabolism and phytohormone signaling pathways were differentially modulated. Eriodictyol treatment also promoted the biosynthesis of quercetin and dihydroquerectin in ovules and elongating fibres through enhanced expression of genes encoding chalcone isomerase, chalcone synthase and flavanone 3-hydroxylase. In addition, auxin biosynthesis and signaling pathway genes were differentially expressed in eriodictyol-driven in vitro fibre elongation. In absence of auxin, eriodictyol predominantly enhanced fibre growth when the localized auxin gradient was disrupted by the auxin transport inhibitor, triiodobenzoic acid. CONCLUSION Eriodictyol was found to significantly enhance fibre development through accumulating and maintaining the temporal auxin gradient in developing unicellular cotton fibres.
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Affiliation(s)
- Anam Qadir Khan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University 430070, Wuhan, Hubei People’s Republic of China
| | - Zhonghua Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University 430070, Wuhan, Hubei People’s Republic of China
| | - Muhammad Mahmood Ahmed
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University 430070, Wuhan, Hubei People’s Republic of China
- Institute of Plant Breeding & Biotechnology, MNS University of Agriculture, Multan, Pakistan
| | - Pengcheng Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University 430070, Wuhan, Hubei People’s Republic of China
| | - Xianlong Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University 430070, Wuhan, Hubei People’s Republic of China
| | - Lili Tu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University 430070, Wuhan, Hubei People’s Republic of China
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Mishra S, Singh S, Ali A, Gupta AC, Shanker K, Bawankule DU, Luqman S. Microwave-assisted Single Step Cinnamic Acid Derivatization and Evaluation for Cytotoxic Potential. Curr Pharm Biotechnol 2019; 21:236-243. [PMID: 31613725 DOI: 10.2174/1389201020666191015161429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Revised: 07/19/2019] [Accepted: 09/20/2019] [Indexed: 11/22/2022]
Abstract
BACKGROUND Phenylpropylene biosynthesis pathway plays a crucial role in the vanillin and their derivative(s) production in the plants. The intermediate of vanillin synthesis i.e. cinnamic acid (CA) is converted into 2-Hydroxy 4-MethoxyBenzaldehyde (HMB) in Decalepis arayalpathra having a number of therapeutic value. OBJECTIVE Microwave-assisted modifications in cinnamic acid were planned for potential anticancer properties with better yield and efficiency. The present study also confirms the presence of HMB and its precursor i.e. cinnamic acid in D. arayalpathra tubers. METHODS We used a single step Microwave Assisted Synthesis (MAS) to modify cinnamic acid, and then examined the synthetic and natural cinnamic acid derivatives anticancer potential against six human cancer (K-562, WRL-68, A549, A431, MCF-7, and COLO-201) and two normal (L-132 and HEK-293) cell lines at 2, 10 and 50 µg/ml concentrations. RESULTS β-bromostyrene and β -nitrostyrene have shown inhibition with IC50 values ranging 0.10-21 µM and 0.03-0.06 µM, respectively to the cancer cell lines. β-bromostyrene was the most potent anticancer derivative of CA with better cellular safety and biocompatibility. CONCLUSION The present study of microwave-assisted synthesis demonstrates a single-step modification in cinnamic acid. MAS is a fast, reliable, and robust method. The resultant compounds have shown in-vitro anticancer activity against human lung carcinoma and breast adenocarcinoma.
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Affiliation(s)
- Sonali Mishra
- Analytical Chemistry Department, CSIR-Central Institute of Medicinal and Aromatic Plants (CIMAP), Lucknow- 226015, India
| | - Shilpi Singh
- Molecular Bioprospection Department, CSIR-CIMAP, Lucknow-226015, India
| | - Arif Ali
- Analytical Chemistry Department, CSIR-Central Institute of Medicinal and Aromatic Plants (CIMAP), Lucknow- 226015, India
| | - Amit C Gupta
- Molecular Bioprospection Department, CSIR-CIMAP, Lucknow-226015, India
| | - Karuna Shanker
- Analytical Chemistry Department, CSIR-Central Institute of Medicinal and Aromatic Plants (CIMAP), Lucknow- 226015, India
| | | | - Suaib Luqman
- 2Molecular Bioprospection Department, CSIR-CIMAP, Lucknow-226015, India
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Vanholme B, El Houari I, Boerjan W. Bioactivity: phenylpropanoids’ best kept secret. Curr Opin Biotechnol 2019; 56:156-162. [DOI: 10.1016/j.copbio.2018.11.012] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 11/10/2018] [Accepted: 11/14/2018] [Indexed: 11/24/2022]
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Vanholme R, De Meester B, Ralph J, Boerjan W. Lignin biosynthesis and its integration into metabolism. Curr Opin Biotechnol 2019; 56:230-239. [PMID: 30913460 DOI: 10.1016/j.copbio.2019.02.018] [Citation(s) in RCA: 338] [Impact Index Per Article: 67.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 02/05/2019] [Accepted: 02/22/2019] [Indexed: 11/25/2022]
Abstract
Lignin is a principal structural component of cell walls in higher terrestrial plants. It reinforces the cell walls, facilitates water transport, and acts as a physical barrier to pathogens. Lignin is typically described as being composed of p-hydroxyphenyl (H), guaiacyl (G), and syringyl (S) units that derive from the polymerization of the hydroxycinnamyl alcohols, p-coumaryl, coniferyl, and sinapyl alcohol, respectively. However, lignin also derives from various other aromatic monomers. Here, we review the biosynthetic pathway to the lignin monomers, and how flux through the pathway is regulated. Upon perturbation of the phenylpropanoid pathway, pathway intermediates may successfully incorporate into the lignin polymer, thereby affecting its physicochemical properties, or may remain soluble as such or as derivatized molecules that might interfere with physiological processes.
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Affiliation(s)
- Ruben Vanholme
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Barbara De Meester
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - John Ralph
- Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726, USA; Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA
| | - Wout Boerjan
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium.
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Muro-Villanueva F, Mao X, Chapple C. Linking phenylpropanoid metabolism, lignin deposition, and plant growth inhibition. Curr Opin Biotechnol 2019; 56:202-208. [PMID: 30677701 DOI: 10.1016/j.copbio.2018.12.008] [Citation(s) in RCA: 69] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Revised: 12/11/2018] [Accepted: 12/13/2018] [Indexed: 12/23/2022]
Abstract
Lignin, a polymer found in the plant secondary cell wall, is a major contributor to biomass' recalcitrance toward saccharification. Because of this negative impact toward the value of lignocellulosic crops, there is a special interest in modifying the content and composition of this important plant biopolymer. For many years this endeavor has been hindered by the plant growth inhibition that is often associated with manipulations to phenylpropanoid metabolism. Although the actual mechanism by which dwarfism arises remains unknown, recent advances in tissue-specific lignin complementation and better understanding of phenylpropanoid transcriptional regulation has made it possible to disentangle lignin modification from perturbations in plant development.
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Affiliation(s)
- Fabiola Muro-Villanueva
- Department of Biochemistry and the Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, United States
| | - Xiangying Mao
- Department of Biochemistry and the Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, United States
| | - Clint Chapple
- Department of Biochemistry and the Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, United States.
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Kurepa J, Shull TE, Karunadasa SS, Smalle JA. Modulation of auxin and cytokinin responses by early steps of the phenylpropanoid pathway. BMC PLANT BIOLOGY 2018; 18:278. [PMID: 30419822 PMCID: PMC6233370 DOI: 10.1186/s12870-018-1477-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 10/10/2018] [Indexed: 05/26/2023]
Abstract
BACKGROUND The phenylpropanoid pathway is responsible for the synthesis of numerous compounds important for plant growth and responses to the environment. In the first committed step of phenylpropanoid biosynthesis, the enzyme phenylalanine ammonia-lyase (PAL) deaminates L-phenylalanine into trans-cinnamic acid that is then converted into p-coumaric acid by cinnamate-4-hydroxylase (C4H). Recent studies showed that the Kelch repeat F-box (KFB) protein family of ubiquitin ligases control phenylpropanoid biosynthesis by promoting the proteolysis of PAL. However, this ubiquitin ligase family, alternatively named Kiss Me Deadly (KMD), was also implicated in cytokinin signaling as it was shown to promote the degradation of type-B ARRs, including the key response activator ARR1. Considering that ubiquitin ligases typically have narrow target specificity, this dual targeting of structurally and functionally unrelated proteins appeared unusual. RESULTS Here we show that the KFBs indeed target PAL but not ARR1. Moreover, we show that changes in early phenylpropanoid biosynthesis alter cytokinin sensitivity - as reported earlier - but that the previously documented cytokinin growth response changes are primarily the result of altered auxin signaling. We found that reduced PAL accumulation decreased, whereas the loss of C4H function increased the strength of the auxin response. The combined loss of function of both enzymes led to a decrease in auxin sensitivity, indicating that metabolic events upstream of C4H control auxin sensitivity. This auxin/phenylpropanoid interaction impacts both shoot and root development and revealed an auxin-dependent stimulatory effect of trans-cinnamic acid feeding on leaf expansion and thus biomass accumulation. CONCLUSIONS Collectively, our results show that auxin-regulated plant growth is fine-tuned by early steps in phenylpropanoid biosynthesis and suggest that metabolites accumulating upstream of the C4H step impact the auxin response mechanism.
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Affiliation(s)
- Jasmina Kurepa
- Department of Plant and Soil Sciences, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, 40546-0236, USA
| | - Timothy E Shull
- Department of Plant and Soil Sciences, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, 40546-0236, USA
| | - Sumudu S Karunadasa
- Department of Plant and Soil Sciences, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, 40546-0236, USA
| | - Jan A Smalle
- Department of Plant and Soil Sciences, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, 40546-0236, USA.
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Li J, Schuman MC, Halitschke R, Li X, Guo H, Grabe V, Hammer A, Baldwin IT. The decoration of specialized metabolites influences stylar development. eLife 2018; 7:e38611. [PMID: 30289384 PMCID: PMC6192696 DOI: 10.7554/elife.38611] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 09/23/2018] [Indexed: 01/05/2023] Open
Abstract
Plants produce many different specialized (secondary) metabolites that function in solving ecological challenges; few are known to function in growth or other primary processes. 17-Hydroxygeranylinalool diterpene glycosides (DTGs) are abundant herbivory-induced, structurally diverse and commonly malonylated defense metabolites in Nicotiana attenuata plants. By identifying and silencing a malonyltransferase, NaMaT1, involved in DTG malonylation, we found that DTG malonylation percentages are normally remarkably uniform, but when disrupted, result in DTG-dependent reduced floral style lengths, which in turn result from reduced stylar cell sizes, IAA contents, and YUC activity; phenotypes that could be restored by IAA supplementation or by silencing the DTG pathway. Moreover, the Nicotiana genus-specific JA-deficient short-style phenotype also results from alterations in DTG malonylation patterns. Decorations of plant specialized metabolites can be tuned to remarkably uniform levels, and this regulation plays a central but poorly understood role in controlling the development of specific plant parts, such as floral styles.
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Affiliation(s)
- Jiancai Li
- Department of Molecular EcologyMax Planck Institute for Chemical EcologyJenaGermany
| | - Meredith C Schuman
- Department of Molecular EcologyMax Planck Institute for Chemical EcologyJenaGermany
- Department of GeographyUniversity of ZurichZurichSwitzerland
| | - Rayko Halitschke
- Department of Molecular EcologyMax Planck Institute for Chemical EcologyJenaGermany
| | - Xiang Li
- Department of Molecular EcologyMax Planck Institute for Chemical EcologyJenaGermany
| | - Han Guo
- Department of Molecular EcologyMax Planck Institute for Chemical EcologyJenaGermany
| | - Veit Grabe
- Department of Evolutionary NeuroethologyMax Planck Institute for Chemical EcologyJenaGermany
| | - Austin Hammer
- Department of BiologyBrigham Young UniversityProvoUnited States
| | - Ian T Baldwin
- Department of Molecular EcologyMax Planck Institute for Chemical EcologyJenaGermany
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Quareshy M, Prusinska J, Kieffer M, Fukui K, Pardal AJ, Lehmann S, Schafer P, del Genio CI, Kepinski S, Hayashi K, Marsh A, Napier RM. The Tetrazole Analogue of the Auxin Indole-3-acetic Acid Binds Preferentially to TIR1 and Not AFB5. ACS Chem Biol 2018; 13:2585-2594. [PMID: 30138566 DOI: 10.1021/acschembio.8b00527] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Indole-3-acetic acid (auxin) is considered one of the cardinal hormones in plant growth and development. It regulates a wide range of processes throughout the plant. Synthetic auxins exploit the auxin-signaling pathway and are valuable as herbicidal agrochemicals. Currently, despite a diversity of chemical scaffolds all synthetic auxins have a carboxylic acid as the active core group. By applying bio-isosteric replacement we discovered that indole-3-tetrazole was active by surface plasmon resonance spectrometry, showing that the tetrazole could initiate assembly of the Transport Inhibitor Resistant 1 (TIR1) auxin coreceptor complex. We then tested the tetrazole's efficacy in a range of whole plant physiological assays and in protoplast reporter assays, which all confirmed auxin activity, albeit rather weak. We then tested indole-3-tetrazole against the AFB5 homologue of TIR1, finding that binding was selective against TIR1, absent with AFB5. The kinetics of binding to TIR1 are contrasted to those for the herbicide picloram, which shows the opposite receptor preference, as it binds to AFB5 with far greater affinity than to TIR1. The basis of the preference of indole-3-tetrazole for TIR1 was revealed to be a single residue substitution using molecular docking, and assays using tir1 and afb5 mutant lines confirmed selectivity in vivo. Given the potential that a TIR1-selective auxin might have for unmasking receptor-specific actions, we followed a rational design, lead optimization campaign, and a set of chlorinated indole-3-tetrazoles was synthesized. Improved affinity for TIR1 and the preference for binding to TIR1 was maintained for 4- and 6-chloroindole-3-tetrazoles, coupled with improved efficacy in vivo. This work expands the range of auxin chemistry for the design of receptor-selective synthetic auxins.
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Affiliation(s)
| | | | - Martin Kieffer
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, U.K
| | - Kosuke Fukui
- Department of Biochemistry, Okayama University of Science, 1-1 Ridaicho, Kita-ku, Okayama-shi Okayama 700-0005, Japan
| | | | - Silke Lehmann
- Warwick Integrative Synthetic Biology Centre, Coventry CV4 7AL, U.K
| | - Patrick Schafer
- Warwick Integrative Synthetic Biology Centre, Coventry CV4 7AL, U.K
| | | | - Stefan Kepinski
- Centre for Plant Sciences, University of Leeds, Leeds LS2 9JT, U.K
| | - Kenichiro Hayashi
- Department of Biochemistry, Okayama University of Science, 1-1 Ridaicho, Kita-ku, Okayama-shi Okayama 700-0005, Japan
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Van de Wouwer D, Boerjan W, Vanholme B. Plant cell wall sugars: sweeteners for a bio-based economy. PHYSIOLOGIA PLANTARUM 2018; 164:27-44. [PMID: 29430656 DOI: 10.1111/ppl.12705] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Revised: 02/07/2018] [Accepted: 02/07/2018] [Indexed: 05/23/2023]
Abstract
Global warming and the consequent climate change is one of the major environmental challenges we are facing today. The driving force behind the rise in temperature is our fossil-based economy, which releases massive amounts of the greenhouse gas carbon dioxide into the atmosphere. In order to reduce greenhouse gas emission, we need to scale down our dependency on fossil resources, implying that we need other sources for energy and chemicals to feed our economy. Here, plants have an important role to play; by means of photosynthesis, plants capture solar energy to split water and fix carbon derived from atmospheric carbon dioxide. A significant fraction of the fixed carbon ends up as polysaccharides in the plant cell wall. Fermentable sugars derived from cell wall polysaccharides form an ideal carbon source for the production of bio-platform molecules. However, a major limiting factor in the use of plant biomass as feedstock for the bio-based economy is the complexity of the plant cell wall and its recalcitrance towards deconstruction. To facilitate the release of fermentable sugars during downstream biomass processing, the composition and structure of the cell wall can be engineered. Different strategies to reduce cell wall recalcitrance will be described in this review. The ultimate goal is to obtain a tailor-made biomass, derived from plants with a cell wall optimized for particular industrial or agricultural applications, without affecting plant growth and development.
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Affiliation(s)
- Dorien Van de Wouwer
- Ghent University, Department of Plant Biotechnology and Bioinformatics, (Technologiepark 927), 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052, Ghent, Belgium
| | - Wout Boerjan
- Ghent University, Department of Plant Biotechnology and Bioinformatics, (Technologiepark 927), 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052, Ghent, Belgium
| | - Bartel Vanholme
- Ghent University, Department of Plant Biotechnology and Bioinformatics, (Technologiepark 927), 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052, Ghent, Belgium
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Zhang W, Lu LY, Hu LY, Cao W, Sun K, Sun QB, Siddikee A, Shi RH, Dai CC. Evidence for the Involvement of Auxin, Ethylene and ROS Signaling During Primary Root Inhibition of Arabidopsis by the Allelochemical Benzoic Acid. PLANT & CELL PHYSIOLOGY 2018; 59:1889-1904. [PMID: 29893960 DOI: 10.1093/pcp/pcy107] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Accepted: 05/31/2018] [Indexed: 05/25/2023]
Abstract
Allelopathy is mediated by plant-derived secondary metabolites (allelochemicals) which are released by donor plants and affect the growth and development of receptor plants. The plant root is the first organ which senses soil allelochemicals this results in the production of a shorter primary root. However, the mechanisms underlying this process remain elusive. Here, we report that a model allelochemical benzoic acid (BA) inhibited primary root elongation of Arabidopsis seedlings by reducing the sizes of both the meristem and elongation zones, and that auxin signaling affected this process. An increase in auxin level in the root tips was associated with increased expression of auxin biosynthesis genes and auxin polar transporter AUX1 and PIN2 genes under BA stress. Mutant analyses demonstrated that AUX1 and PIN2 rather than PIN1 were required for the inhibition of primary root elongation during BA exposure. Furthermore, BA stimulated ethylene evolution, whereas blocking BA-induced ethylene signaling with an ethylene biosynthesis inhibitor (Co2+), an ethylene perception antagonist (1-methylcyclopropene) or ethylene signaling mutant lines etr1-3 and ein3eil1 compromised BA-mediated inhibition of root elongation and up-regulation of auxin biosynthesis-related genes together with AUX1 and PIN2, indicating that ethylene signal was involved in auxin-mediated inhibition of primary root elongation during BA stress. Further analysis revealed that the BA-induced reactive oxygen species (ROS) burst contributed to BA-mediated root growth inhibition without affecting auxin and ethylene signals. Taken together, our results reveal that the allelochemical BA inhibits root elongation by increasing auxin accumulation via stimulation of auxin biosynthesis and AUX1/PIN2-mediated auxin transport via stimulation of ethylene production and an auxin/ethylene-independent ROS burst.
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Affiliation(s)
- Wei Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Li-Ying Lu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Li-Yan Hu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Wei Cao
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Kai Sun
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Qi-Biao Sun
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Ashaduzzaman Siddikee
- Department of Genetics and Plant Breeding, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh
| | - Run-Han Shi
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
| | - Chuan-Chao Dai
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Jiangsu Province, China
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Fukui K, Hayashi KI. Manipulation and Sensing of Auxin Metabolism, Transport and Signaling. PLANT & CELL PHYSIOLOGY 2018; 59:1500-1510. [PMID: 29668988 DOI: 10.1093/pcp/pcy076] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Accepted: 04/09/2018] [Indexed: 05/26/2023]
Abstract
The plant hormone auxin is involved in virtually every aspect of plant growth and development. A chemical genetic approach has greatly contributed to the identification of important genes in auxin biosynthesis, transport and signaling. Molecular genetic technologies and structural information for auxin regulatory components have accelerated the identification and characterization of many novel small molecule modulators in auxin biology. These modulators have been widely utilized to dissect auxin responses. Here we provide an overview of the structure, primary target, in planta activity and application of small molecule modulators in auxin biology.
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Affiliation(s)
- Kosuke Fukui
- Department of Biochemistry, Okayama University of Science, Okayama City, Japan
| | - Ken-Ichiro Hayashi
- Department of Biochemistry, Okayama University of Science, Okayama City, Japan
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Araniti F, Lupini A, Mauceri A, Zumbo A, Sunseri F, Abenavoli MR. The allelochemical trans-cinnamic acid stimulates salicylic acid production and galactose pathway in maize leaves: A potential mechanism of stress tolerance. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 128:32-40. [PMID: 29753136 DOI: 10.1016/j.plaphy.2018.05.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 04/09/2018] [Accepted: 05/02/2018] [Indexed: 05/20/2023]
Abstract
In this study, the effects (5 days) of the secondary metabolite trans-cinnamic acid on maize leaves (Zea mays L.), through a physiological and an untargeted metabolomic approach, were evaluated. A reduction in leaf growth and development accompanied by a decrease in protein content was observed in treated seedlings. Besides, trans-cinnamic acid stimulated the photosynthetic machinery with a significant increment in pigment content (chlorophyll a, b and carotenoids), a stimulation of the light adapted PSII efficiency (ɸII) as well as the chlorophyll a fluorescence (YNO), the apparent electron transport rate, and the regulated dissipation of the energy (YNPQ). By contrast, the dark adapted PSII parameter (Fv/Fm) was not affected suggesting that no physical damages to the antenna complex were caused by trans-cinnamic acid. These results suggested that maize seedlings were experiencing a stress but, at the same time, were able to cope with it. This hypothesis was confirmed by both the increment in benzoic and salicylic acids, important molecules involved in stress response, and the metabolomic results, which pointed out that the seedlings are directing their metabolism towards galactose production modulating its pathway, which is pivotal for the production of the antioxidant compound ascorbic acid (ASA). Indeed, in treated plants, a significant increment in total ASA content (28%) was observed. The results suggested that the main strategy adopted by plants to cope with trans-cinnamic-induced stress consisted in the modulation of their metabolism in order to increase the total ASA and carotenoids concentration, radical scavenging species.
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Affiliation(s)
- Fabrizio Araniti
- Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Feo di Vito, I-89124, Reggio Calabria, Italy.
| | - Antonio Lupini
- Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Feo di Vito, I-89124, Reggio Calabria, Italy
| | - Antonio Mauceri
- Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Feo di Vito, I-89124, Reggio Calabria, Italy
| | - Antonino Zumbo
- Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Feo di Vito, I-89124, Reggio Calabria, Italy
| | - Francesco Sunseri
- Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Feo di Vito, I-89124, Reggio Calabria, Italy
| | - Maria Rosa Abenavoli
- Dipartimento di AGRARIA, Università Mediterranea di Reggio Calabria, Feo di Vito, I-89124, Reggio Calabria, Italy
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Abu-Abied M, Belausov E, Hagay S, Peremyslov V, Dolja V, Sadot E. Myosin XI-K is involved in root organogenesis, polar auxin transport, and cell division. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:2869-2881. [PMID: 29579267 PMCID: PMC5972647 DOI: 10.1093/jxb/ery112] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 03/20/2018] [Indexed: 05/11/2023]
Abstract
The interplay between myosin- and auxin-mediated processes was investigated by following root development in the triple myosin knockout mutant xi-k xi-1 xi-2 (3KO). It was found that the 3KO plants generated significantly more lateral and adventitious roots than the wild-type plants or the rescued plant line expressing functional myosin XI-K:yellow fluorescent protein (YFP; 3KOR). Using the auxin-dependent reporter DR5:venus, a significant change in the auxin gradient toward the root tip was found in 3KO plants, which correlated with the loss of polar localization of the auxin transporter PIN1 in the stele and with the increased number of stele cells with oblique cell walls. Interestingly, myosin XI-K:YFP was localized to the cell division apparatus in the root and shoot meristems. In anaphase and early telophase, XI-K:YFP was concentrated in the midzone and the forming cell plate. In late telophase, XI-K:YFP formed a ring that overlapped with the growing phragmoplast. Myosin receptors MyoB1 and MyoB2 that are highly expressed throughout the plant were undetectable in dividing cells, suggesting that the myosin function in cell division relies on distinct adaptor proteins. These results suggest that myosin XIs are involved in orchestrating root organogenesis via effects on polar distribution of auxin responses and on cell division.
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Affiliation(s)
- Mohamad Abu-Abied
- The Institute of Plant Sciences, The Volcani Center, ARO, HaMaccabim Road, Rishon LeZion, Israel
| | - Eduard Belausov
- The Institute of Plant Sciences, The Volcani Center, ARO, HaMaccabim Road, Rishon LeZion, Israel
| | - Sapir Hagay
- The Institute of Plant Sciences, The Volcani Center, ARO, HaMaccabim Road, Rishon LeZion, Israel
| | - Valera Peremyslov
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA
| | - Valerian Dolja
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA
| | - Einat Sadot
- The Institute of Plant Sciences, The Volcani Center, ARO, HaMaccabim Road, Rishon LeZion, Israel
- Correspondence:
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Kato-Noguchi H, Nakamura K, Okuda N. Involvement of an autotoxic compound in asparagus decline. JOURNAL OF PLANT PHYSIOLOGY 2018; 224-225:49-55. [PMID: 29597067 DOI: 10.1016/j.jplph.2018.03.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 03/13/2018] [Accepted: 03/15/2018] [Indexed: 05/19/2023]
Abstract
Asparagus (Asparagus officinalis L.) is a widely cultivated perennial veritable and can be harvested more than ten years. However, the crop quality and yield decline after a few year's cultivation, which is called "asparagus decline". Even though those asparagus plants were replaced with new young asparagus plants, the productivity and quality of the crop remain relatively low, which is known as a "asparagus replant problem". One of the possible reasons for "asparagus decline" and "asparagus replant problem" is thought to be autotoxicity of asparagus. However, the compounds involved in the autotoxicity is not clear. The objective of this study was therefore to determine the potential role of autotoxicity in the "asparagus decline" and "asparagus replant problem". An aqueous methanol extract of 10-year-asparagus-cultivated soils inhibited the growth of asparagus seedlings and other two test plants with concentration dependent manner. The result confirmed that the asparagus soils have autotoxic activity. The extract was then purified by several chromatographies with monitoring the inhibitory activity and a potent growth inhibitory substance causing the autotoxic effect was isolated. The chemical structures of the compound was determined by spectral data to be trans-cinnamic acid. trans-Cinnamic acid inhibited the growth of asparagus seedlings at concentrations greater than 10 μM. The concentrations required for 50% growth inhibition of asparagus (IC50) were 24.1-41.6 μM. trans-Cinnamic acid accumulated 174 μM in the 10-year-asparagus-cultivated soils, which may be enough levels to cause the growth inhibition on asparagus considering its IC50 value. Therefore, trans-cinnamic acid may contribute to the autotoxic effect of asparagus soils, and may be in part responsible for "asparagus decline" and "asparagus replant problem".
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Affiliation(s)
- Hisashi Kato-Noguchi
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, Miki, Kagawa 761-0795, Japan.
| | - Keisuke Nakamura
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, Miki, Kagawa 761-0795, Japan
| | - Nobuyuki Okuda
- Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, Miki, Kagawa 761-0795, Japan
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Pařízková B, Pernisová M, Novák O. What Has Been Seen Cannot Be Unseen-Detecting Auxin In Vivo. Int J Mol Sci 2017; 18:ijms18122736. [PMID: 29258197 PMCID: PMC5751337 DOI: 10.3390/ijms18122736] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Revised: 12/10/2017] [Accepted: 12/12/2017] [Indexed: 12/24/2022] Open
Abstract
Auxins mediate various processes that are involved in plant growth and development in response to specific environmental conditions. Its proper spatio-temporal distribution that is driven by polar auxin transport machinery plays a crucial role in the wide range of auxins physiological effects. Numbers of approaches have been developed to either directly or indirectly monitor auxin distribution in vivo in order to elucidate the basis of its precise regulation. Herein, we provide an updated list of valuable techniques used for monitoring auxins in plants, with their utilities and limitations. Because the spatial and temporal resolutions of the presented approaches are different, their combination may provide a comprehensive outcome of auxin distribution in diverse developmental processes.
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Affiliation(s)
- Barbora Pařízková
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science of Palacký University & Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic.
- Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science of Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic.
| | - Markéta Pernisová
- Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science of Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic.
- Functional Genomics and Proteomics, National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czech Republic.
| | - Ondřej Novák
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science of Palacký University & Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic.
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