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Zhou G, Ma L, Zhao C, Xie F, Xu Y, Wang Q, Hao D, Gao X. Genome-wide association study and molecular marker development for susceptibility to Gibberella ear rot in maize. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024; 137:222. [PMID: 39276212 DOI: 10.1007/s00122-024-04711-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 08/04/2024] [Indexed: 09/16/2024]
Abstract
KEY MESSAGES Sixty-nine quantitative trait nucleotides conferring maize resistance to Gibberella ear rot were detected, including eighteen novel loci. Four candidate genes were predicted, and four kompetitive allele-specific PCR markers were developed. Maize Gibberella ear rot (GER), caused by Fusarium graminearum, is one of the most devastating diseases in maize-growing regions worldwide. Enhancing maize cultivar resistance to this disease requires a comprehensive understanding of the genetic basis of resistance to GER. In this study, 334 maize inbred lines were phenotyped for GER resistance in five environments and genotyped using the Affymetrix CGMB56K SNP Array, and a genome-wide association study of resistance to GER was performed using a 3V multi-locus random-SNP-effect mixed linear model. A total of 69 quantitative trait nucleotides (QTNs) conferring resistance to GER were detected, and all of them explained individually less than 10% of the phenotypic variation, suggesting that resistance to GER is controlled by multiple minor-effect genetic loci. A total of 348 genes located around the 200-kb genomic region of these 69 QTNs were identified, and four of them (Zm00001d029648, Zm00001d031449, Zm00001d006397, and Zm00001d053145) were considered candidate genes conferring susceptibility to GER based on gene expression patterns. Moreover, four kompetitive allele-specific PCR markers were developed based on the non-synonymous variation of these four candidate genes and validated in two genetic populations. This study provides useful genetic resources for improving resistance to GER in maize.
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Affiliation(s)
- Guangfei Zhou
- Jiangsu Yanjiang Institute of Agricultural Sciences, Nantong, 226012, China.
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, China.
- Collaborative Innovation Center for Modern Crop Production Co-sponsored by Province and Ministry/College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Liang Ma
- Jiangsu Yanjiang Institute of Agricultural Sciences, Nantong, 226012, China
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, China
- Collaborative Innovation Center for Modern Crop Production Co-sponsored by Province and Ministry/College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Caihong Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, China
- Collaborative Innovation Center for Modern Crop Production Co-sponsored by Province and Ministry/College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Fugui Xie
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, China
- Collaborative Innovation Center for Modern Crop Production Co-sponsored by Province and Ministry/College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yang Xu
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, 225009, China
| | - Qing Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, China
- Collaborative Innovation Center for Modern Crop Production Co-sponsored by Province and Ministry/College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Derong Hao
- Jiangsu Yanjiang Institute of Agricultural Sciences, Nantong, 226012, China
| | - Xiquan Gao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, China.
- Collaborative Innovation Center for Modern Crop Production Co-sponsored by Province and Ministry/College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China.
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Huang J, Hua J, Peng L, Bai L, Luo S. The Diterpene Isopimaric Acid Modulates the Phytohormone Pathway to Promote Oryza sativa L. Rice Seedling Growth. Curr Issues Mol Biol 2024; 46:9772-9784. [PMID: 39329932 PMCID: PMC11430709 DOI: 10.3390/cimb46090580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 08/27/2024] [Accepted: 08/31/2024] [Indexed: 09/28/2024] Open
Abstract
Many plant secondary metabolites are active and important in the regulation of plant growth. Certain plant-derived diterpenes are known to promote plant growth, but the pathways by which this promotion occurs are still unknown. Activity screening revealed that the plant-derived diterpene isopimaric acid exhibits growth-promoting activity in rice (Oryza sativa L.) seedlings. Furthermore, 25 μg/mL of isopimaric acid promoted the growth of 15 self-incompatible associated populations from different rice lineages to different extents. Quantitative analyses revealed a significant decrease in the concentration of the defense-related phytohormone abscisic acid (ABA) following treatment with isopimaric acid. Correlation analysis of the phytohormone concentrations with growth characteristics revealed that the length of seedling shoots was significantly negatively correlated with concentrations of 3-indole-butyric acid (IBA). Moreover, the total root weight was not only negatively correlated with ABA concentrations but also negatively correlated with concentrations of isopentenyl adenine (iP). These data suggest that isopimaric acid is able to influence the phytohormone pathway to balance energy allocation between growth and defense in rice seedlings and also alter the correlation between the concentrations of phytohormones and traits such as shoot and root length and weight. We provide a theoretical basis for the development and utilization of isopimaric acid as a plant growth regulator for rice.
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Affiliation(s)
| | | | | | - Liping Bai
- Engineering Research Center of Protection and Utilization of Plant Resources, College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China; (J.H.); (J.H.)
| | - Shihong Luo
- Engineering Research Center of Protection and Utilization of Plant Resources, College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China; (J.H.); (J.H.)
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3
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Yasmin F, Cowie AE, Zerbe P. Understanding the chemical language mediating maize immunity and environmental adaptation. THE NEW PHYTOLOGIST 2024; 243:2093-2101. [PMID: 39049575 DOI: 10.1111/nph.20000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2024] [Accepted: 07/10/2024] [Indexed: 07/27/2024]
Abstract
Diverse networks of specialized metabolites promote plant fitness by mediating beneficial and antagonistic environmental interactions. In maize (Zea mays), constitutive and dynamically formed cocktails of terpenoids, benzoxazinoids, oxylipins, and phenylpropanoids contribute to plant defense and ecological adaptation. Recent research has highlighted the multifunctional nature of many specialized metabolites, serving not only as elaborate chemical defenses that safeguard against biotic and abiotic stress but also as regulators in adaptive developmental processes and microbiome interactions. Great strides have also been made in identifying the modular pathway networks that drive maize chemical diversity. Translating this knowledge into strategies for enhancing stress resilience traits has the potential to address climate-driven yield losses in one of the world's major food, feed, and bioenergy crops.
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Affiliation(s)
- Farida Yasmin
- Department of Plant Biology, University of California-Davis, Davis, CA, 95616, USA
| | - Anna E Cowie
- Department of Plant Biology, University of California-Davis, Davis, CA, 95616, USA
| | - Philipp Zerbe
- Department of Plant Biology, University of California-Davis, Davis, CA, 95616, USA
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4
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Zhao M, Huang S, Zhang Q, Wei Y, Tao Z, Wang C, Zhao Y, Zhang X, Dong J, Wang L, Chen C, Wang T, Li P. The plant terpenes DMNT and TMTT function as signaling compounds that attract Asian corn borer (Ostrinia furnacalis) to maize plants. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024. [PMID: 39171839 DOI: 10.1111/jipb.13763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 07/23/2024] [Accepted: 07/24/2024] [Indexed: 08/23/2024]
Abstract
During their co-evolution with herbivorous insects, plants have developed multiple defense strategies that resist pests, such as releasing a blend of herbivory-induced plant volatiles (HIPVs) that repel pests or recruit their natural enemies. However, the responses of insects to HIPVs in maize (Zea mays L.) are not well understood. Here, we demonstrate that the Asian corn borer (ACB, Ostrinia furnacalis), a major insect pest of maize, shows a preference for maize pre-infested with ACB larvae rather than being repelled by these plants. Through combined transcriptomic and metabolomics analysis of ACB-infested maize seedlings, we identified two substances that explain this behavior: (E)-4,8-dimethylnona-1,3,7-triene (DMNT) and (3E,7E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene (TMTT). DMNT and TMTT attracted ACB larvae, and knocking out the maize genes responsible for their biosynthesis via gene editing impaired this attraction. External supplementation with DMNT/TMTT hampered the larvae's ability to locate pre-infested maize. These findings uncover a novel role for DMNT and TMTT in driving the behavior of ACB. Genetic modification of maize to make it less detectable by ACB might be an effective strategy for developing maize germplasm resistant to ACB and for managing this pest effectively in the field.
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Affiliation(s)
- Mengjie Zhao
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Shijie Huang
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Qingyang Zhang
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Yuming Wei
- The School of Tea and Food Science and Technology, Anhui Agricultural University, Hefei, 230036, China
| | - Zhen Tao
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Chuanhong Wang
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Yibing Zhao
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Xinqiao Zhang
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Jinghui Dong
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Ling Wang
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Chen Chen
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Department of Microbiology, School of Basic Medical Sciences, Anhui Medical University, Hefei, 230032, China
| | - Tengyue Wang
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
| | - Peijin Li
- The National Key Engineering Laboratory of Crop Stress Resistance Breeding, The School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
- Center for Crop Pest Detection and Control, Anhui Agricultural University, Hefei, 230036, China
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5
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Wang X, Zhang J, Lu X, Bai Y, Wang G. Two diversities meet in the rhizosphere: root specialized metabolites and microbiome. J Genet Genomics 2024; 51:467-478. [PMID: 37879496 DOI: 10.1016/j.jgg.2023.10.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 10/15/2023] [Accepted: 10/15/2023] [Indexed: 10/27/2023]
Abstract
Plants serve as rich repositories of diverse chemical compounds collectively referred to as specialized metabolites. These compounds are of importance for adaptive processes, including interactions with various microbes both beneficial and harmful. Considering microbes as bioreactors, the chemical diversity undergoes dynamic changes when root-derived specialized metabolites (RSMs) and microbes encounter each other in the rhizosphere. Recent advancements in sequencing techniques and molecular biology tools have not only accelerated the elucidation of biosynthetic pathways of RSMs but also unveiled the significance of RSMs in plant-microbe interactions. In this review, we provide a comprehensive description of the effects of RSMs on microbe assembly in the rhizosphere and the influence of corresponding microbial changes on plant health, incorporating the most up-to-date information available. Additionally, we highlight open questions that remain for a deeper understanding of and harnessing the potential of RSM-microbe interactions to enhance plant adaptation to the environment. Finally, we propose a pipeline for investigating the intricate associations between root exometabolites and the rhizomicrobiome.
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Affiliation(s)
- Xiaochen Wang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China
| | - Jingying Zhang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China; CAS-JIC Centre of Excellence for Plant and Microbial Science, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan 572025, China
| | - Xinjun Lu
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China; CAS-JIC Centre of Excellence for Plant and Microbial Science, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan 572025, China
| | - Yang Bai
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China; CAS-JIC Centre of Excellence for Plant and Microbial Science, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan 572025, China; College of Advanced Agricultural Sciences, Chinese Academy of Sciences, Beijing 100049, China.
| | - Guodong Wang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing 100101, China; College of Advanced Agricultural Sciences, Chinese Academy of Sciences, Beijing 100049, China.
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6
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Hossain Z, Zhao S, Luo X, Liu K, Li L, Hubbard M. Deciphering Aphanomyces euteiches-pea-biocontrol bacterium interactions through untargeted metabolomics. Sci Rep 2024; 14:8877. [PMID: 38632368 PMCID: PMC11024177 DOI: 10.1038/s41598-024-52949-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 01/25/2024] [Indexed: 04/19/2024] Open
Abstract
Aphanomyces euteiches causes root rot in pea, leading to significant yield losses. However, the metabolites involved in this pathosystem have not been thoroughly studied. This study aimed to fill this gap and explore mechanisms of bacterial suppression of A. euteiches via untargeted metabolomics using pea grown in a controlled environment. Chemical isotope labeling (CIL), followed by liquid chromatography-mass spectrometry (LC-MS), was used for metabolite separation and detection. Univariate and multivariate analyses showed clear separation of metabolites from pathogen-treated pea roots and roots from other treatments. A three-tier approach positively or putatively identified 5249 peak pairs or metabolites. Of these, 403 were positively identified in tier 1; 940 were putatively identified with high confidence in tier 2. There were substantial changes in amino acid pool, and fatty acid and phenylpropanoid pathway products. More metabolites, including salicylic and jasmonic acids, were upregulated than downregulated in A. euteiches-infected roots. 1-aminocyclopropane-1-carboxylic acid and 12-oxophytodienoic acid were upregulated in A. euteiches + bacterium-treated roots compared to A. euteiches-infected roots. A great number of metabolites were up- or down-regulated in response to A. euteiches infection compared with the control and A. euteiches + bacterium-treated plants. The results of this study could facilitate improved disease management.
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Affiliation(s)
- Zakir Hossain
- Swift Current Research and Development Centre, Agriculture and Agri-Food Canada, 1 Airport Road, Swift Current, Saskatchewan, S9H 3X2, Canada.
| | - Shuang Zhao
- Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada
| | - Xian Luo
- Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada
| | - Kui Liu
- Swift Current Research and Development Centre, Agriculture and Agri-Food Canada, 1 Airport Road, Swift Current, Saskatchewan, S9H 3X2, Canada
| | - Liang Li
- Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada
| | - Michelle Hubbard
- Swift Current Research and Development Centre, Agriculture and Agri-Food Canada, 1 Airport Road, Swift Current, Saskatchewan, S9H 3X2, Canada.
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7
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Chen R, Wang J, Xu J, Nie S, Chen C, Li Y, Li Y, He J, Li W, Wen M, Qiao J. Heterologous Biosynthesis of Kauralexin A1 in Saccharomyces cerevisiae through Metabolic and Enzyme Engineering. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:7308-7317. [PMID: 38529564 DOI: 10.1021/acs.jafc.4c00856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Kauralexin A1 (KA1) is a key intermediate of the kauralexin A series metabolites of maize phytoalexins. However, their application is severely limited by their low abundance in maize. In this study, an efficient biosynthetic pathway was constructed to produce KA1 in Saccharomyces cerevisiae. Also, metabolic and enzyme engineering strategies were applied to construct the high-titer strains, such as chassis modification, screening synthases, the colocalization of enzymes, and multiple genomic integrations. First, the KA1 precursor ent-kaurene was synthesized using the efficient diterpene synthase GfCPS/KS from Fusarium fujikuroi, and optimized to reach 244.36 mg/L in shake flasks, which displayed a 200-fold increase compared to the initial strain. Then, the KA1 was produced under the catalysis of ZmCYP71Z18 from Zea mays and SmCPR1 from Salvia miltiorrhiza, and the titer was further improved by integrating the fusion protein into the genome. Finally, an ent-kaurene titer of 763.23 mg/L and a KA1 titer of 42.22 mg/L were achieved through a single-stage fed-batch fermentation in a 5 L bioreactor. This is the first report of the heterologous biosynthesis of maize diterpene phytoalexins in S. cerevisiae, which lays a foundation for further pathway reconstruction and biosynthesis of the kauralexin A series maize phytoalexins.
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Affiliation(s)
- Ruiqi Chen
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
| | - Jingru Wang
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
- School of life science, Liaoning University, Shenyang 110036, China
| | - Junsong Xu
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
| | - Shengxin Nie
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
| | - Chen Chen
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
| | - Yukun Li
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
| | - Yanni Li
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
| | - Jianwei He
- School of life science, Liaoning University, Shenyang 110036, China
| | - Weiguo Li
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
| | - Mingzhang Wen
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
| | - Jianjun Qiao
- Department of Pharmaceutical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
- Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University, Tianjin 300072, China
- Zhejiang Institute of Tianjin University (Shaoxing), Shaoxing 312300, China
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Liu C, He S, Chen J, Wang M, Li Z, Wei L, Chen Y, Du M, Liu D, Li C, An C, Bhadauria V, Lai J, Zhu W. A dual-subcellular localized β-glucosidase confers pathogen and insect resistance without a yield penalty in maize. PLANT BIOTECHNOLOGY JOURNAL 2024; 22:1017-1032. [PMID: 38012865 PMCID: PMC10955503 DOI: 10.1111/pbi.14242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/23/2023] [Accepted: 11/11/2023] [Indexed: 11/29/2023]
Abstract
Maize is one of the most important crops for food, cattle feed and energy production. However, maize is frequently attacked by various pathogens and pests, which pose a significant threat to maize yield and quality. Identification of quantitative trait loci and genes for resistance to pests will provide the basis for resistance breeding in maize. Here, a β-glucosidase ZmBGLU17 was identified as a resistance gene against Pythium aphanidermatum, one of the causal agents of corn stalk rot, by genome-wide association analysis. Genetic analysis showed that both structural variations at the promoter and a single nucleotide polymorphism at the fifth intron distinguish the two ZmBGLU17 alleles. The causative polymorphism near the GT-AG splice site activates cryptic alternative splicing and intron retention of ZmBGLU17 mRNA, leading to the downregulation of functional ZmBGLU17 transcripts. ZmBGLU17 localizes in both the extracellular matrix and vacuole and contribute to the accumulation of two defence metabolites lignin and DIMBOA. Silencing of ZmBGLU17 reduces maize resistance against P. aphanidermatum, while overexpression significantly enhances resistance of maize against both the oomycete pathogen P. aphanidermatum and the Asian corn borer Ostrinia furnacalis. Notably, ZmBGLU17 overexpression lines exhibited normal growth and yield phenotype in the field. Taken together, our findings reveal that the apoplastic and vacuolar localized ZmBGLU17 confers resistance to both pathogens and insect pests in maize without a yield penalty, by fine-tuning the accumulation of lignin and DIMBOA.
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Affiliation(s)
- Chuang Liu
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Shengfeng He
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Junbin Chen
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Mingyu Wang
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Zhenju Li
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Luyang Wei
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Yan Chen
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Meida Du
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Dandan Liu
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Cai Li
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Chunju An
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
- State Key Laboratory of Maize Bio‐breedingChina Agricultural UniversityBeijingChina
| | - Vijai Bhadauria
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Jinsheng Lai
- State Key Laboratory of Maize Bio‐breeding, National Maize Improvement Center, Frontiers Science Center for Molecular Design Breeding, Department of Plant Genetics and BreedingChina Agricultural UniversityBeijingChina
| | - Wangsheng Zhu
- China Key Laboratory of Pest Monitoring and Green Management, MOA, and College of Plant ProtectionChina Agricultural UniversityBeijingChina
- State Key Laboratory of Maize Bio‐breedingChina Agricultural UniversityBeijingChina
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9
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Yang H, Ji S, Wu D, Zhu M, Lv G. Effects of Root-Root Interactions on the Physiological Characteristics of Haloxylon ammodendron Seedlings. PLANTS (BASEL, SWITZERLAND) 2024; 13:683. [PMID: 38475528 DOI: 10.3390/plants13050683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 02/22/2024] [Accepted: 02/27/2024] [Indexed: 03/14/2024]
Abstract
The root traits and response strategies of plants play crucial roles in mediating interactions between plant root systems. Current research on the role of root exudates as underground chemical signals mediating these interactions has focused mainly on crops, with less attention given to desert plants in arid regions. In this study, we focused on the typical desert plant Haloxylon ammodendron and conducted a pot experiment using three root isolation methods (plastic film separation, nylon mesh separation, and no separation). We found that (1) as the degree of isolation increased, plant biomass significantly increased (p < 0.05), while root organic carbon content exhibited the opposite trend; (2) soil electrical conductivity (EC), soil total nitrogen (STN), soil total phosphorus (STP), and soil organic carbon (SOC) were significantly greater in the plastic film and nylon mesh separation treatments than in the no separation treatment (p < 0.05), and the abundance of Proteobacteria and Actinobacteriota was significantly greater in the plastic film separation treatment than in the no separation treatment (p < 0.05); (3) both plastic film and nylon mesh separations increased the secretion of alkaloids derived from tryptophan and phenylalanine in the plant root system compared with that in the no separation treatment; and (4) Pseudomonas, Proteobacteria, sesquiterpenes, triterpenes, and coumarins showed positive correlations, while both pseudomonas and proteobacteria were significantly positively correlated with soil EC, STN, STP, and SOC (p < 0.05). Aurachin D was negatively correlated with Gemmatimonadota and Proteobacteria, and both were significantly correlated with soil pH, EC, STN, STP, and SOC. The present study revealed strong negative interactions between the root systems of H. ammodendron seedlings, in which sesquiterpenoids, triterpenoids, coumarins, and alkaloids released by the roots played an important role in the subterranean competitive relationship. This study provides a deeper understanding of intraspecific interactions in the desert plant H. ammodendron and offers some guidance for future cultivation of this species in the northwestern region of China.
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Affiliation(s)
- Huifang Yang
- College of Ecology and Environment, Xinjiang University, Urumqi 830017, China
- Key Laboratory of Oasis Ecology of Education Ministry, Xinjiang University, Urumqi 830017, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Urumqi 830017, China
| | - Suwan Ji
- College of Ecology and Environment, Xinjiang University, Urumqi 830017, China
- Key Laboratory of Oasis Ecology of Education Ministry, Xinjiang University, Urumqi 830017, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Urumqi 830017, China
| | - Deyan Wu
- College of Ecology and Environment, Xinjiang University, Urumqi 830017, China
- Key Laboratory of Oasis Ecology of Education Ministry, Xinjiang University, Urumqi 830017, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Urumqi 830017, China
| | - Menghao Zhu
- College of Ecology and Environment, Xinjiang University, Urumqi 830017, China
- Key Laboratory of Oasis Ecology of Education Ministry, Xinjiang University, Urumqi 830017, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Urumqi 830017, China
| | - Guanghui Lv
- College of Ecology and Environment, Xinjiang University, Urumqi 830017, China
- Key Laboratory of Oasis Ecology of Education Ministry, Xinjiang University, Urumqi 830017, China
- Xinjiang Jinghe Observation and Research Station of Temperate Desert Ecosystem, Ministry of Education, Urumqi 830017, China
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10
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Krępski T, Piasecka A, Święcicka M, Kańczurzewska M, Sawikowska A, Dmochowska-Boguta M, Rakoczy-Trojanowska M, Matuszkiewicz M. Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels. BMC PLANT BIOLOGY 2024; 24:107. [PMID: 38347436 PMCID: PMC10863301 DOI: 10.1186/s12870-024-04726-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 01/02/2024] [Indexed: 02/15/2024]
Abstract
BACKGROUND Rye (Secale cereale L.) is a cereal crop highly tolerant to environmental stresses, including abiotic and biotic stresses (e.g., fungal diseases). Among these fungal diseases, leaf rust (LR) is a major threat to rye production. Despite extensive research, the genetic basis of the rye immune response to LR remains unclear. RESULTS An RNA-seq analysis was conducted to examine the immune response of three unrelated rye inbred lines (D33, D39, and L318) infected with compatible and incompatible Puccinia recondita f. sp. secalis (Prs) isolates. In total, 877 unique differentially expressed genes (DEGs) were identified at 20 and 36 h post-treatment (hpt). Most of the DEGs were up-regulated. Two lines (D39 and L318) had more up-regulated genes than down-regulated genes, whereas the opposite trend was observed for line D33. The functional classification of the DEGs helped identify the largest gene groups regulated by LR. Notably, these groups included several DEGs encoding cytochrome P450, receptor-like kinases, methylesterases, pathogenesis-related protein-1, xyloglucan endotransglucosylases/hydrolases, and peroxidases. The metabolomic response was highly conserved among the genotypes, with line D33 displaying the most genotype-specific changes in secondary metabolites. The effect of pathogen compatibility on metabolomic changes was less than the effects of the time-points and genotypes. Accordingly, the secondary metabolome of rye is altered by the recognition of the pathogen rather than by a successful infection. The results of the enrichment analysis of the DEGs and differentially accumulated metabolites (DAMs) reflected the involvement of phenylpropanoid and diterpenoid biosynthesis as well as thiamine metabolism in the rye immune response. CONCLUSION Our work provides novel insights into the genetic and metabolic responses of rye to LR. Numerous immune response-related DEGs and DAMs were identified, thereby clarifying the mechanisms underlying the rye response to compatible and incompatible Prs isolates during the early stages of LR development. The integration of transcriptomic and metabolomic analyses elucidated the contributions of phenylpropanoid biosynthesis and flavonoid pathways to the rye immune response to Prs. This combined analysis of omics data provides valuable insights relevant for future research conducted to enhance rye resistance to LR.
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Affiliation(s)
- T Krępski
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
| | - A Piasecka
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznań, 61-704, Poland
| | - M Święcicka
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
| | - M Kańczurzewska
- Institute of Mathematics, Poznan University of Technology, Poznań, 60-965, Poland
| | - A Sawikowska
- Department of Mathematical and Statistical Methods, Poznań University of Life Sciences, Poznań, 60-637, Poland
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznań, 61-704, Poland
| | - M Dmochowska-Boguta
- Plant Breeding and Acclimatization Institute - National Research Institute, Radzikow, Blonie, 05-870, Poland
| | - M Rakoczy-Trojanowska
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
| | - M Matuszkiewicz
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland.
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11
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Köllner TG, Gershenzon J, Peters RJ, Zerbe P, Schmelz EA. The terpene synthase gene family in maize - a clarification of existing community nomenclature. BMC Genomics 2023; 24:744. [PMID: 38057721 PMCID: PMC10699003 DOI: 10.1186/s12864-023-09856-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 11/28/2023] [Indexed: 12/08/2023] Open
Affiliation(s)
- Tobias G Köllner
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany
| | - Reuben J Peters
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA, 50011, USA
| | - Philipp Zerbe
- Department of Plant Biology, University of California-Davis, Davis, CA, 95616, USA
| | - Eric A Schmelz
- Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, 92093-0380, USA
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12
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Wu M, Northen TR, Ding Y. Stressing the importance of plant specialized metabolites: omics-based approaches for discovering specialized metabolism in plant stress responses. FRONTIERS IN PLANT SCIENCE 2023; 14:1272363. [PMID: 38023861 PMCID: PMC10663375 DOI: 10.3389/fpls.2023.1272363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 10/24/2023] [Indexed: 12/01/2023]
Abstract
Plants produce a diverse range of specialized metabolites that play pivotal roles in mediating environmental interactions and stress adaptation. These unique chemical compounds also hold significant agricultural, medicinal, and industrial values. Despite the expanding knowledge of their functions in plant stress interactions, understanding the intricate biosynthetic pathways of these natural products remains challenging due to gene and pathway redundancy, multifunctionality of proteins, and the activity of enzymes with broad substrate specificity. In the past decade, substantial progress in genomics, transcriptomics, metabolomics, and proteomics has made the exploration of plant specialized metabolism more feasible than ever before. Notably, recent advances in integrative multi-omics and computational approaches, along with other technologies, are accelerating the discovery of plant specialized metabolism. In this review, we present a summary of the recent progress in the discovery of plant stress-related specialized metabolites. Emphasis is placed on the application of advanced omics-based approaches and other techniques in studying plant stress-related specialized metabolism. Additionally, we discuss the high-throughput methods for gene functional characterization. These advances hold great promise for harnessing the potential of specialized metabolites to enhance plant stress resilience in the future.
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Affiliation(s)
- Mengxi Wu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Trent R. Northen
- Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Yezhang Ding
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
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13
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Ivamoto-Suzuki ST, Celedón JM, Yuen MMS, Kitzberger CSG, Silva Domingues D, Bohlmann J, Protasio Pereira LF. Functional Characterization of ent-Copalyl Diphosphate Synthase and Kaurene Synthase Genes from Coffea arabica L. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:15863-15873. [PMID: 37816128 DOI: 10.1021/acs.jafc.2c09087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/12/2023]
Abstract
The biochemical profile of coffee beans translates directly into quality traits, nutraceutical and health promoting properties of the coffee beverage. Ent-kaurene is the ubiquitous precursor for gibberellin biosynthesis in plants, but it also serves as an intermediate in specialized (i.e., secondary) diterpenoid metabolism that leads to a diversity of more than 1,000 different metabolites. Nutraceutical effects on human health attributed to diterpenes include antioxidant, anticarcinogenic, and anti-inflammatory properties. Cafestol (CAF) and kahweol (KAH) are two diterpenes found exclusively in the Coffea genus. Our objective was to identify and functionally characterize genes involved in the central step of ent-kaurene production. We identified 17 putative terpene synthase genes in the transcriptome of Coffea arabica. Two ent-copalyl diphosphate synthase (CaCPS) and three kaurene synthase (CaKS) were selected and manually annotated. Transcript expression profiles of CaCPS1 and CaKS3 best matched the CAF and KAH metabolite profiles in different tissues. CaCPS1 and CaKS3 proteins were heterologously expressed and functionally characterized. CaCPS1 catalyzes the cyclization of geranylgeranyl diphosphate (GGPP) to ent-copalyl diphosphate (ent-CPP), which is converted to ent-kaurene by CaKS3. Knowledge about the central steps of diterpene formation in coffee provides a foundation for future characterization of the subsequent enzymes involved in CAF and KAH biosynthesis.
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Affiliation(s)
- Suzana Tiemi Ivamoto-Suzuki
- Grupo de Genômica e Transcriptômica em Plantas, Instituto de Biociências, Departamento de Biodiversidade, Universidade Estadual Paulista, CEP 13506-900 Rio Claro, Sao Paulo, Brazil
- Michael Smith Laboratories, University of British Columbia, V6T 1Z4 Vancouver, BC, Canada
- Programa de Pós-graduação em Genética e Biologia Molecular, Universidade Estadual de Londrina, 86057-970 Londrina, Brazil
| | - José Miguel Celedón
- Michael Smith Laboratories, University of British Columbia, V6T 1Z4 Vancouver, BC, Canada
| | - Macaire M S Yuen
- Michael Smith Laboratories, University of British Columbia, V6T 1Z4 Vancouver, BC, Canada
| | | | - Douglas Silva Domingues
- Escola Superior de Agricultura "Luiz de Queiroz", Departamento de Genética, Universidade de São Paulo, 13418-900 Piracicaba, Brazil
| | - Jörg Bohlmann
- Michael Smith Laboratories, University of British Columbia, V6T 1Z4 Vancouver, BC, Canada
| | - Luiz Filipe Protasio Pereira
- Empresa Brasileira de Pesquisa Agropecuária, Embrapa Café, 70770-901 Brasília, Brazil
- Laboratório de Biotecnologia Vegetal, Instituto de Desenvolvimento Rural do Paraná, 86047-902 Londrina, Brazil
- Programa de Pós-graduação em Genética e Biologia Molecular, Universidade Estadual de Londrina, 86057-970 Londrina, Brazil
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14
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Li X, Chou MY, Bonito GM, Last RL. Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition. Commun Biol 2023; 6:917. [PMID: 37679469 PMCID: PMC10485007 DOI: 10.1038/s42003-023-05290-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 08/25/2023] [Indexed: 09/09/2023] Open
Abstract
Plant derived bioactive small molecules have attracted attention of scientists across fundamental and applied scientific disciplines. We seek to understand the influence of these phytochemicals on rhizosphere and root-associated fungi. We hypothesize that - consistent with accumulating evidence that switchgrass genotype impacts microbiome assembly - differential terpenoid accumulation contributes to switchgrass ecotype-specific microbiome composition. An initial in vitro Petri plate-based disc diffusion screen of 18 switchgrass root derived fungal isolates revealed differential responses to upland- and lowland-isolated metabolites. To identify specific fungal growth-modulating metabolites, we tested fractions from root extracts on three ecologically important fungal isolates - Linnemania elongata, Trichoderma sp. and Fusarium sp. Saponins and diterpenoids were identified as the most prominent antifungal metabolites. Finally, analysis of liquid chromatography-purified terpenoids revealed fungal inhibition structure - activity relationships (SAR). Saponin antifungal activity was primarily determined by the number of sugar moieties - saponins glycosylated at a single core position were inhibitory whereas saponins glycosylated at two core positions were inactive. Saponin core hydroxylation and acetylation were also associated with reduced activity. Diterpenoid activity required the presence of an intact furan ring for strong fungal growth inhibition. These results inform future breeding and biotechnology strategies for crop protection with reduced pesticide application.
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Affiliation(s)
- Xingxing Li
- DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Ming-Yi Chou
- DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, 48824, USA
- Department of Plant Biology, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Gregory M Bonito
- DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, 48824, USA
| | - Robert L Last
- DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
- Department Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.
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15
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Yactayo-Chang JP, Block AK. The impact of climate change on maize chemical defenses. Biochem J 2023; 480:1285-1298. [PMID: 37622733 DOI: 10.1042/bcj20220444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 08/01/2023] [Accepted: 08/17/2023] [Indexed: 08/26/2023]
Abstract
Climate change is increasingly affecting agriculture, both at the levels of crops themselves, and by altering the distribution and damage caused by insect or microbial pests. As global food security depends on the reliable production of major crops such as maize (Zea mays), it is vital that appropriate steps are taken to mitigate these negative impacts. To do this a clear understanding of what the impacts are and how they occur is needed. This review focuses on the impact of climate change on the production and effectiveness of maize chemical defenses, including volatile organic compounds, terpenoid phytoalexins, benzoxazinoids, phenolics, and flavonoids. Drought, flooding, heat stress, and elevated concentrations of atmospheric carbon dioxide, all impact the production of maize chemical defenses, in a compound and tissue-specific manner. Furthermore, changes in stomatal conductance and altered soil conditions caused by climate change can impact environmental dispersal and effectiveness certain chemicals. This can alter both defensive barrier formation and multitrophic interactions. The production of defense chemicals is controlled by stress signaling networks. The use of similar networks to co-ordinate the response to abiotic and biotic stress can lead to complex integration of these networks in response to the combinatorial stresses that are likely to occur in a changing climate. The impact of multiple stressors on maize chemical defenses can therefore be different from the sum of the responses to individual stressors and challenging to predict. Much work remains to effectively leverage these protective chemicals in climate-resilient maize.
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Affiliation(s)
- Jessica P Yactayo-Chang
- United States Department of Agriculture-Agricultural Research Service, Chemistry Research Unit, Gainesville, FL, U.S.A
| | - Anna K Block
- United States Department of Agriculture-Agricultural Research Service, Chemistry Research Unit, Gainesville, FL, U.S.A
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16
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Chakraborty P, Biswas A, Dey S, Bhattacharjee T, Chakrabarty S. Cytochrome P450 Gene Families: Role in Plant Secondary Metabolites Production and Plant Defense. J Xenobiot 2023; 13:402-423. [PMID: 37606423 PMCID: PMC10443375 DOI: 10.3390/jox13030026] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 07/07/2023] [Accepted: 07/24/2023] [Indexed: 08/23/2023] Open
Abstract
Cytochrome P450s (CYPs) are the most prominent family of enzymes involved in NADPH- and O2-dependent hydroxylation processes throughout all spheres of life. CYPs are crucial for the detoxification of xenobiotics in plants, insects, and other organisms. In addition to performing this function, CYPs serve as flexible catalysts and are essential for producing secondary metabolites, antioxidants, and phytohormones in higher plants. Numerous biotic and abiotic stresses frequently affect the growth and development of plants. They cause a dramatic decrease in crop yield and a deterioration in crop quality. Plants protect themselves against these stresses through different mechanisms, which are accomplished by the active participation of CYPs in several biosynthetic and detoxifying pathways. There are immense potentialities for using CYPs as a candidate for developing agricultural crop species resistant to biotic and abiotic stressors. This review provides an overview of the plant CYP families and their functions to plant secondary metabolite production and defense against different biotic and abiotic stresses.
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Affiliation(s)
- Panchali Chakraborty
- Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA;
| | - Ashok Biswas
- Annual Bast Fiber Breeding Laboratory, Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China
- Department of Horticulture, Sylhet Agricultural University, Sylhet 3100, Bangladesh
| | - Susmita Dey
- Annual Bast Fiber Breeding Laboratory, Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410205, China
- Department of Plant Pathology and Seed Science, Sylhet Agricultural University, Sylhet 3100, Bangladesh
| | - Tuli Bhattacharjee
- Department of Chemistry, Jahangirnagar University, Dhaka 1342, Bangladesh
| | - Swapan Chakrabarty
- College of Forest Resources and Environmental Sciences, Michigan Technological University, Houghton, MI 49931, USA
- College of Computing, Department of Computer Science, Michigan Technological University, Houghton, MI 49931, USA
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17
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Wang Y, Zou J, Li J, Kong F, Xu L, Xu D, Li J, Yang H, Zhang L, Li T, Fan H. Identification and functional analysis of ZmDLS associated with the response to biotic stress in maize. FRONTIERS IN PLANT SCIENCE 2023; 14:1162826. [PMID: 37546249 PMCID: PMC10399692 DOI: 10.3389/fpls.2023.1162826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 06/26/2023] [Indexed: 08/08/2023]
Abstract
Terpenes are the main class of secondary metabolites produced in response to pest and germ attacks. In maize (Zea mays L.), they are the essential components of the herbivore-induced plant volatile mixture, which functioned as a direct or indirect defense against pest and germ attacks. In this study, 43 maize terpene synthase gene (ZmTPS) family members were systematically identified and analyzed through the whole genomes of maize. Nine genes, including Zm00001d032230, Zm00001d045054, Zm00001d024486, Zm00001d004279, Zm00001d002351, Zm00001d002350, Zm00001d053916, Zm00001d015053, and Zm00001d015054, were isolated for their differential expression pattern in leaves after corn borer (Ostrinia nubilalis) bite. Additionally, six genes (Zm00001d045054, Zm00001d024486, Zm00001d002351, Zm00001d002350, Zm00001d015053, and Zm00001d015054) were significantly upregulated in response to corn borer bite. Among them, Zm00001d045054 was cloned. Heterologous expression and enzyme activity assays revealed that Zm00001d045054 functioned as d-limonene synthase. It was renamed ZmDLS. Further analysis demonstrated that its expression was upregulated in response to corn borer bites and Fusarium graminearum attacks. The mutant of ZmDLS downregulated the expressions of Zm00001d024486, Zm00001d002351, Zm00001d002350, Zm00001d015053, and Zm00001d015054. It was more attractive to corn borer bites and more susceptible to F. graminearum infection. The yeast one-hybrid assay and dual-luciferase assay showed that ZmMYB76 and ZmMYB101 could upregulate the expression of ZmDLS by binding to the promoter region. This study may provide a theoretical basis for the functional analysis and transcriptional regulation of terpene synthase genes in crops.
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Affiliation(s)
- Yiting Wang
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Jie Zou
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Jiali Li
- School of Life Science, Anhui Agricultural University, Hefei, China
| | - Fanna Kong
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Lina Xu
- Institute of Plant Protection and Agro-products Safety, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Dafeng Xu
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Jiaxin Li
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Huaying Yang
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Lin Zhang
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Tingchun Li
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China
| | - Honghong Fan
- School of Life Science, Anhui Agricultural University, Hefei, China
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18
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Murphy KM, Dowd T, Khalil A, Char SN, Yang B, Endelman BJ, Shih PM, Topp C, Schmelz EA, Zerbe P. A dolabralexin-deficient mutant provides insight into specialized diterpenoid metabolism in maize. PLANT PHYSIOLOGY 2023; 192:1338-1358. [PMID: 36896653 PMCID: PMC10231366 DOI: 10.1093/plphys/kiad150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 01/19/2023] [Accepted: 02/02/2023] [Indexed: 06/01/2023]
Abstract
Two major groups of specialized metabolites in maize (Zea mays), termed kauralexins and dolabralexins, serve as known or predicted diterpenoid defenses against pathogens, herbivores, and other environmental stressors. To consider the physiological roles of the recently discovered dolabralexin pathway, we examined dolabralexin structural diversity, tissue-specificity, and stress-elicited production in a defined biosynthetic pathway mutant. Metabolomics analyses support a larger number of dolabralexin pathway products than previously known. We identified dolabradienol as a previously undetected pathway metabolite and characterized its enzymatic production. Transcript and metabolite profiling showed that dolabralexin biosynthesis and accumulation predominantly occur in primary roots and show quantitative variation across genetically diverse inbred lines. Generation and analysis of CRISPR-Cas9-derived loss-of-function Kaurene Synthase-Like 4 (Zmksl4) mutants demonstrated dolabralexin production deficiency, thus supporting ZmKSL4 as the diterpene synthase responsible for the conversion of geranylgeranyl pyrophosphate precursors into dolabradiene and downstream pathway products. Zmksl4 mutants further display altered root-to-shoot ratios and root architecture in response to water deficit. Collectively, these results demonstrate dolabralexin biosynthesis via ZmKSL4 as a committed pathway node biochemically separating kauralexin and dolabralexin metabolism, and suggest an interactive role of maize dolabralexins in plant vigor during abiotic stress.
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Affiliation(s)
- Katherine M Murphy
- Department of Plant Biology, University of California-Davis, Davis, CA 95616, USA
| | - Tyler Dowd
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
| | - Ahmed Khalil
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA
| | - Si Nian Char
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
| | - Bing Yang
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
| | - Benjamin J Endelman
- Department of Plant Biology, University of California-Davis, Davis, CA 95616, USA
| | - Patrick M Shih
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Plant and Microbial Biology, UC Berkeley, Berkeley, CA 94720, USA
| | | | - Eric A Schmelz
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA
| | - Philipp Zerbe
- Department of Plant Biology, University of California-Davis, Davis, CA 95616, USA
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Chanu NK, Mandal MK, Srivastava A, Mishra Y, Chaurasia N. Proteomics Reveals Damaging Effect of Alpha-Cypermethrin Exposure in a Non-Target Freshwater Microalga Chlorella sp. NC-MKM. Curr Microbiol 2023; 80:144. [PMID: 36943524 DOI: 10.1007/s00284-023-03179-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Accepted: 01/02/2023] [Indexed: 03/23/2023]
Abstract
Alpha-cypermethrin, a pyrethroid pesticide, is frequently used on crops to prevent insect attacks. However, occasionally, due to drift, leaching, or with rainwater, it enters the aquatic environment and poses a serious threat to the growth of non-target aquatic organisms. In the current study, we were interested in investigating the damaging effect of alpha-cypermethrin on a local freshwater non-target green alga Chlorella sp. NC-MKM in terms of its protein levels. This was achieved by exposing Chlorella sp. NC-MKM to an EC50 concentration of alpha-cypermethrin for 1 day, followed by the two-dimensional (2-D) gel electrophoresis and MALDI-TOF MS. Fifty-three proteins, which had showed significant differential accumulation (> 1.5 fold, P < 0.05) after exposure to alpha-cypermethrin, were considered as differentially accumulated proteins (DAPs). These DAPs were further divided into several functional categories, and the expressions of each in control and treatment samples were compared. Comparison revealed that alpha-cypermethrin exposure affects the accumulation of proteins related with photosynthesis, stress response, carbohydrate metabolism, signal transduction and transporters, translation, transcription, cell division, lipid metabolism, amino acid and nucleotide biosynthesis, secondary metabolites production, and post-translational modification, and thus rendered the tested algal isolate sensitive toward this pesticide. The overall findings of this research thus offer a fundamental understanding of the possible mechanism of action of the insecticide alpha-cypermethrin on the microalga Chlorella sp. NC-MKM and also suggest potential biomarkers for the investigation of pesticide exposed microalgae.
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Affiliation(s)
- Ng Kunjarani Chanu
- Environmental Biotechnology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, 793022, Meghalaya, India
| | - Madan Kumar Mandal
- Environmental Biotechnology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, 793022, Meghalaya, India
| | - Akanksha Srivastava
- Department of Botany, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Yogesh Mishra
- Department of Botany, Centre of Advanced Study in Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Neha Chaurasia
- Environmental Biotechnology Laboratory, Department of Biotechnology and Bioinformatics, North-Eastern Hill University, Shillong, 793022, Meghalaya, India.
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20
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Advances of Apetala2/Ethylene Response Factors in Regulating Development and Stress Response in Maize. Int J Mol Sci 2023; 24:ijms24065416. [PMID: 36982510 PMCID: PMC10049130 DOI: 10.3390/ijms24065416] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 02/28/2023] [Accepted: 03/10/2023] [Indexed: 03/18/2023] Open
Abstract
Apetala2/ethylene response factor (AP2/ERF) is one of the largest families of transcription factors, regulating growth, development, and stress response in plants. Several studies have been conducted to clarify their roles in Arabidopsis and rice. However, less research has been carried out on maize. In this review, we systematically identified the AP2/ERFs in the maize genome and summarized the research progress related to AP2/ERF genes. The potential roles were predicted from rice homologs based on phylogenetic and collinear analysis. The putative regulatory interactions mediated by maize AP2/ERFs were discovered according to integrated data sources, implying that they involved complex networks in biological activities. This will facilitate the functional assignment of AP2/ERFs and their applications in breeding strategy.
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21
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Saldivar EV, Ding Y, Poretsky E, Bird S, Block AK, Huffaker A, Schmelz EA. Maize Terpene Synthase 8 (ZmTPS8) Contributes to a Complex Blend of Fungal-Elicited Antibiotics. PLANTS (BASEL, SWITZERLAND) 2023; 12:1111. [PMID: 36903970 PMCID: PMC10005556 DOI: 10.3390/plants12051111] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 02/23/2023] [Accepted: 02/23/2023] [Indexed: 06/18/2023]
Abstract
In maize (Zea mays), fungal-elicited immune responses include the accumulation of terpene synthase (TPS) and cytochrome P450 monooxygenases (CYP) enzymes resulting in complex antibiotic arrays of sesquiterpenoids and diterpenoids, including α/β-selinene derivatives, zealexins, kauralexins and dolabralexins. To uncover additional antibiotic families, we conducted metabolic profiling of elicited stem tissues in mapping populations, which included B73 × M162W recombinant inbred lines and the Goodman diversity panel. Five candidate sesquiterpenoids associated with a chromosome 1 locus spanning the location of ZmTPS27 and ZmTPS8. Heterologous enzyme co-expression studies of ZmTPS27 in Nicotiana benthamiana resulted in geraniol production while ZmTPS8 yielded α-copaene, δ-cadinene and sesquiterpene alcohols consistent with epi-cubebol, cubebol, copan-3-ol and copaborneol matching the association mapping efforts. ZmTPS8 is an established multiproduct α-copaene synthase; however, ZmTPS8-derived sesquiterpene alcohols are rarely encountered in maize tissues. A genome wide association study further linked an unknown sesquiterpene acid to ZmTPS8 and combined ZmTPS8-ZmCYP71Z19 heterologous enzyme co-expression studies yielded the same product. To consider defensive roles for ZmTPS8, in vitro bioassays with cubebol demonstrated significant antifungal activity against both Fusarium graminearum and Aspergillus parasiticus. As a genetically variable biochemical trait, ZmTPS8 contributes to the cocktail of terpenoid antibiotics present following complex interactions between wounding and fungal elicitation.
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Affiliation(s)
- Evan V. Saldivar
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
- Department of Plant Biology, Carnegie Institution for Science, Stanford University, Palo Alto, CA 94305, USA
| | - Yezhang Ding
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Elly Poretsky
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
| | - Skylar Bird
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
| | - Anna K. Block
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL 32608, USA
| | - Alisa Huffaker
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
| | - Eric A. Schmelz
- Department of Cell and Developmental Biology, University of California at San Diego, San Diego, CA 92093, USA
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22
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Zhang Y, Liu J, Guan L, Fan D, Xia F, Wang A, Bao Y, Xu Y. By-Products of Zea mays L.: A Promising Source of Medicinal Properties with Phytochemistry and Pharmacological Activities: A Comprehensive Review. Chem Biodivers 2023; 20:e202200940. [PMID: 36721262 DOI: 10.1002/cbdv.202200940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 01/31/2023] [Accepted: 01/31/2023] [Indexed: 02/02/2023]
Abstract
Zea mays (Z. mays) is one of the main cereal crops in the world, and it's by-products have exhibited medicinal properties to explore. This article intends to review the chemical compositions and pharmacological activities of by-products of Z. mays (corn silks, roots, bract, stems, bran, and leaves) which support the therapeutic potential in the treatment of different diseases, with emphasis on the natural occurring compounds and detailed pharmacological developments. Based on this review, 231 natural compounds are presented. Among them, flavonoids, terpenes, phenylpropanoids, and alkaloids are the most frequently reported. The by-products of Z. mays possess diuretic effects, hepatoprotective, anti-diabetic, antioxidant, neuroprotective, anti-inflammatory, anti-cancer, plant protection activity, and other activities. This article reviewed the phytochemistry and pharmacological activities of Z. mays for comprehensive quality control and the safety and effectiveness to enhance future application.
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Affiliation(s)
- Yunqiang Zhang
- School of Traditional Chinese Medicine, Shenyang Pharmaceutical University, Shenyang, 110016, China
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
| | - Jianyu Liu
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
- School of Pharmaceutical Engineering, Shenyang Pharmaceutical University, Shenyang, 110016, P. R. China
| | - Lu Guan
- School of Traditional Chinese Medicine, Shenyang Pharmaceutical University, Shenyang, 110016, China
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
| | - Dongxue Fan
- School of Traditional Chinese Medicine, Shenyang Pharmaceutical University, Shenyang, 110016, China
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
| | - Feiruo Xia
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
- School of Pharmacy, Shenyang Pharmaceutical University, Shenyang, 110016, China
| | - Andong Wang
- School of Pharmacy, Nantong University, Nantong, Jiangsu 226001, P. R. China
| | - Ying Bao
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
- School of Pharmaceutical Engineering, Shenyang Pharmaceutical University, Shenyang, 110016, P. R. China
| | - Yongnan Xu
- Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education, Shenyang Pharmaceutical University, Shenyang, 110016, China
- School of Pharmaceutical Engineering, Shenyang Pharmaceutical University, Shenyang, 110016, P. R. China
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23
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Wang Z, Nelson DR, Zhang J, Wan X, Peters RJ. Plant (di)terpenoid evolution: from pigments to hormones and beyond. Nat Prod Rep 2023; 40:452-469. [PMID: 36472136 PMCID: PMC9945934 DOI: 10.1039/d2np00054g] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Covering: up to 2014-2022.Diterpenoid biosynthesis in plants builds on the necessary production of (E,E,E)-geranylgeranyl diphosphate (GGPP) for photosynthetic pigment production, with diterpenoid biosynthesis arising very early in land plant evolution, enabling stockpiling of the extensive arsenal of (di)terpenoid natural products currently observed in this kingdom. This review will build upon that previously published in the Annual Review of Plant Biology, with a stronger focus on enzyme structure-function relationships, as well as additional insights into the evolution of (di)terpenoid metabolism since generated.
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Affiliation(s)
- Zhibiao Wang
- School of Life Sciences, Beijing University of Chinese Medicine, Beijing 100029, China.,Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50014, USA.
| | - David R Nelson
- Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA
| | - Juan Zhang
- Zhongzhi International Institute of Agricultural Biosciences, Shunde Innovation School, Research Center of Biology and Agriculture, University of Science and Technology Beijing, Beijing 100024, China.
| | - Xiangyuan Wan
- Zhongzhi International Institute of Agricultural Biosciences, Shunde Innovation School, Research Center of Biology and Agriculture, University of Science and Technology Beijing, Beijing 100024, China.
| | - Reuben J Peters
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50014, USA.
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24
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Werck-Reichhart D. Promiscuity, a Driver of Plant Cytochrome P450 Evolution? Biomolecules 2023; 13:biom13020394. [PMID: 36830762 PMCID: PMC9953472 DOI: 10.3390/biom13020394] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 02/13/2023] [Accepted: 02/14/2023] [Indexed: 02/22/2023] Open
Abstract
Plant cytochrome P450 monooxygenases were long considered to be highly substrate-specific, regioselective and stereoselective enzymes, in this respect differing from their animal counterparts. The functional data that have recently accumulated clearly counter this initial dogma. Highly promiscuous P450 enzymes have now been reported, mainly in terpenoid pathways with functions in plant adaptation, but also some very versatile xenobiotic/herbicide metabolizers. An overlap and predictable interference between endogenous and herbicide metabolism are starting to emerge. Both substrate preference and permissiveness vary between plant P450 families, with high promiscuity seemingly favoring retention of gene duplicates and evolutionary blooms. Yet significant promiscuity can also be observed in the families under high negative selection and with essential functions, usually enhanced after gene duplication. The strategies so far implemented, to systematically explore P450 catalytic capacity, are described and discussed.
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Affiliation(s)
- Danièle Werck-Reichhart
- Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg, 67000 Strasbourg, France
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25
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Zhou H, Hua J, Li H, Song X, Luo S. Structurally diverse specialized metabolites of maize and their extensive biological functions. J Cell Physiol 2023. [PMID: 36745523 DOI: 10.1002/jcp.30955] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Revised: 12/31/2022] [Accepted: 01/12/2023] [Indexed: 02/07/2023]
Abstract
Maize originated in southern Mexico and various hybrid varieties have been bred during domestication. All maize tissues are rich in specialized plant metabolites (SPMs), which allow the plants to resist the stresses of herbivores and pathogens or environmental factors. To date, a total of 95 terpenoids, 91 phenolics, 31 alkaloids, and 6 other types of compounds have been identified from maize. Certain volatile sesquiterpenes released by maize plants attract the natural enemies of maize herbivores and provide an indirect defensive function. Kauralexins and dolabralexins are the most abundant diterpenoids in maize and are known to regulate and stabilize the maize rhizosphere microbial community. Benzoxazinoids and benzoxazolinones are the main alkaloids in maize and are found in maize plants at the highest concentrations at the seedling stage. These two kinds of alkaloids directly resist herbivory and pathogenic infection. Phenolics enhance the cross-links between maize cell walls. Meanwhile, SPMs also regulate plant-plant relationships. In conclusion, SPMs in maize show a large diversity of chemical structures and broad-spectrum biological activities. We use these to provide ideas and information to enable the improvement of maize resistances through breeding and to promote the rapid development of the maize industry.
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Affiliation(s)
- Huiwen Zhou
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning Province, China
| | - Juan Hua
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning Province, China
| | - Hongdi Li
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning Province, China
| | - Xinyu Song
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning Province, China
| | - Shihong Luo
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, Liaoning Province, China
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26
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Fu J, Wang L, Pei W, Yan J, He L, Ma B, Wang C, Zhu C, Chen G, Shen Q, Wang Q. ZmEREB92 interacts with ZmMYC2 to activate maize terpenoid phytoalexin biosynthesis upon Fusarium graminearum infection through jasmonic acid/ethylene signaling. THE NEW PHYTOLOGIST 2023; 237:1302-1319. [PMID: 36319608 DOI: 10.1111/nph.18590] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
Maize (Zea mays) terpenoid phytoalexins (MTPs) induced by multiple fungi display extensive antimicrobial activities, yet how maize precisely regulates MTP accumulation upon pathogen infection remains elusive. In this study, pretreatment with jasmonic acid (JA)/ethylene (ET)-related inhibitors significantly reduced Fusarium graminearum-induced MTP accumulation and resulted in enhanced susceptibility to F. graminearum, indicating the involvement of JA/ET in MTP regulatory network. ZmEREB92 positively regulated MTP biosynthetic gene (MBG) expression by correlation analysis. Knockout of ZmEREB92 significantly compromised maize resistance to F. graminearum with delayed induction of MBGs and attenuated MTP accumulation. The activation of ZmEREB92 on MBGs is dependent on the interaction with ZmMYC2, which directly binds to MBG promoters. ZmJAZ14 interacts both with ZmEREB92 and with ZmMYC2 in a competitive manner to negatively regulate MBG expression. Altogether, our findings illustrate the regulatory mechanism for JA/ET-mediated MTP accumulation upon F. graminearum infection with the involvement of ZmEREB92, ZmMYC2, and ZmJAZ14, which provides new insights into maize disease responses.
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Affiliation(s)
- Jingye Fu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Liping Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Wenzheng Pei
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jie Yan
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Linqian He
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Ben Ma
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Chang Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Chenying Zhu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Gang Chen
- Graduate School of Horticulture, Chiba University, Matsudo, Chiba, 271-8510, Japan
| | - Qinqin Shen
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
| | - Qiang Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, College of Agronomy, Sichuan Agricultural University, Chengdu, 611130, China
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27
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Guan Y, He X, Wen D, Chen S, Chen F, Chen F, Jiang Y. Fusarium oxysporum infection on root elicit aboveground terpene production and salicylic acid accumulation in Chrysanthemum morifolium. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 190:11-23. [PMID: 36087542 DOI: 10.1016/j.plaphy.2022.08.029] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 08/11/2022] [Accepted: 08/30/2022] [Indexed: 06/15/2023]
Abstract
Underground infection of Fusarium oxysporum resulted in great yield losses in chrysanthemum (Chrysanthemum morifolium Ramat.) industry. However, the effect of F. oxysporum root disease on the terpenes production in above- and below-ground parts of plant is completely unexplored. The aim of this study was to investigate the systematic impact of Fusarium infection underground on the terpene production in aboveground parts of chrysanthemum. Terpene production in above- and below-ground parts was profiled in a time series of post-inoculation by GC-MS. Total terpenes were significantly induced from roots and leaves of Fusarium-infected versus healthy plants. These terpenes included monoterpenes, sesquiterpenes and diterpenes, in which sesquiterpenes were primarily induced in roots and leaves, while monoterpenes were produced only in leaves. Through transcriptome analysis, 8 differentially expressed terpene synthase genes (TPSs) were screened out. The relative expression levels of 8 TPS genes at different developmental stage and tissues indicated the spatial delay of the TPS genes in leaves. The induced terpenes from roots and leaves showed consistency with the expression pattern of TPS genes. The biochemical function of Cm-j-TPS1/2/7 were verified by enzymatic assay. Additionally, it's found that the content of salicylic acid (SA) in root and leaf significantly increased by F. oxysporum infection, suggesting a role of the SA signaling pathway in defense. Together, these results reveal the defense response of above- and below-ground parts of plants to root fungal attack and provide a theoretical basis for the effective prediction and control of F. oxysporum infection in chrysanthemum.
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Affiliation(s)
- Yaqin Guan
- Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xi He
- Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Dian Wen
- Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Sumei Chen
- Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Fadi Chen
- Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Feng Chen
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Yifan Jiang
- Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
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28
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Tiedge K, Li X, Merrill AT, Davisson D, Chen Y, Yu P, Tantillo DJ, Last RL, Zerbe P. Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum). THE NEW PHYTOLOGIST 2022; 236:1393-1408. [PMID: 36028985 PMCID: PMC9912200 DOI: 10.1111/nph.18443] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 08/09/2022] [Indexed: 05/13/2023]
Abstract
Switchgrass (Panicum virgatum) is a bioenergy model crop valued for its energy efficiency and drought tolerance. The related monocot species rice (Oryza sativa) and maize (Zea mays) deploy species-specific, specialized metabolites as core stress defenses. By contrast, specialized chemical defenses in switchgrass are largely unknown. To investigate specialized metabolic drought responses in switchgrass, we integrated tissue-specific transcriptome and metabolite analyses of the genotypes Alamo and Cave-in-Rock that feature different drought tolerance. The more drought-susceptible Cave-in-Rock featured an earlier onset of transcriptomic changes and significantly more differentially expressed genes in response to drought compared to Alamo. Specialized pathways showed moderate differential expression compared to pronounced transcriptomic alterations in carbohydrate and amino acid metabolism. However, diterpenoid-biosynthetic genes showed drought-inducible expression in Alamo roots, contrasting largely unaltered triterpenoid and phenylpropanoid pathways. Metabolomic analyses identified common and genotype-specific flavonoids and terpenoids. Consistent with transcriptomic alterations, several root diterpenoids showed significant drought-induced accumulation, whereas triterpenoid abundance remained predominantly unchanged. Structural analysis verified select drought-responsive diterpenoids as oxygenated furanoditerpenoids. Drought-dependent transcriptome and metabolite profiles provide the foundation to understand the molecular mechanisms underlying switchgrass drought responses. Accumulation of specialized root diterpenoids and corresponding pathway transcripts supports a role in drought stress tolerance.
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Affiliation(s)
- Kira Tiedge
- Department of Plant BiologyUniversity of California, DavisDavisCA95616USA
- Groningen Institute for Evolutionary Life SciencesUniversity of Groningen9747AG Groningenthe Netherlands
| | - Xingxing Li
- Department of Biochemistry and Molecular BiologyMichigan State UniversityEast LansingMI48824USA
- DOE Great Lakes Bioenergy Research CenterMichigan State UniversityEast LansingMI48824USA
| | - Amy T. Merrill
- Department of ChemistryUniversity of California, DavisDavisCA95616USA
| | - Danielle Davisson
- Department of Plant BiologyUniversity of California, DavisDavisCA95616USA
| | - Yuxuan Chen
- Department of Plant BiologyUniversity of California, DavisDavisCA95616USA
| | - Ping Yu
- NMR FacilityUniversity of California, DavisDavisCA95616USA
| | - Dean J. Tantillo
- Department of ChemistryUniversity of California, DavisDavisCA95616USA
| | - Robert L. Last
- Department of Biochemistry and Molecular BiologyMichigan State UniversityEast LansingMI48824USA
- DOE Great Lakes Bioenergy Research CenterMichigan State UniversityEast LansingMI48824USA
- Department Plant BiologyMichigan State UniversityEast LansingMI48824USA
| | - Philipp Zerbe
- Department of Plant BiologyUniversity of California, DavisDavisCA95616USA
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29
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REN J, WU Y, ZHU Z, CHEN R, ZHANG L. Biosynthesis and regulation of diterpenoids in medicinal plants. Chin J Nat Med 2022; 20:761-772. [DOI: 10.1016/s1875-5364(22)60214-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Indexed: 11/03/2022]
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30
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Tang HV, Berryman DL, Mendoza J, Yactayo-Chang JP, Li QB, Christensen SA, Hunter CT, Best N, Soubeyrand E, Akhtar TA, Basset GJ, Block AK. Dedicated farnesyl diphosphate synthases circumvent isoprenoid-derived growth-defense tradeoffs in Zea mays. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 112:207-220. [PMID: 35960639 DOI: 10.1111/tpj.15941] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 08/10/2022] [Indexed: 06/15/2023]
Abstract
Zea mays (maize) makes phytoalexins such as sesquiterpenoid zealexins, to combat invading pathogens. Zealexins are produced from farnesyl diphosphate in microgram per gram fresh weight quantities. As farnesyl diphosphate is also a precursor for many compounds essential for plant growth, the question arises as to how Z. mays produces high levels of zealexins without negatively affecting vital plant systems. To examine if specific pools of farnesyl diphosphate are made for zealexin synthesis we made CRISPR/Cas9 knockouts of each of the three farnesyl diphosphate synthases (FPS) in Z. mays and examined the resultant impacts on different farnesyl diphosphate-derived metabolites. We found that FPS3 (GRMZM2G098569) produced most of the farnesyl diphosphate for zealexins, while FPS1 (GRMZM2G168681) made most of the farnesyl diphosphate for the vital respiratory co-factor ubiquinone. Indeed, fps1 mutants had strong developmental phenotypes such as reduced stature and development of chlorosis. The replication and evolution of the fps gene family in Z. mays enabled it to produce dedicated FPSs for developmentally related ubiquinone production (FPS1) or defense-related zealexin production (FPS3). This partitioning of farnesyl diphosphate production between growth and defense could contribute to the ability of Z. mays to produce high levels of phytoalexins without negatively impacting its growth.
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Affiliation(s)
- Hoang V Tang
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
| | - David L Berryman
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, USA
| | - Jorrel Mendoza
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
| | - Jessica P Yactayo-Chang
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
| | - Qin-Bao Li
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
| | - Shawn A Christensen
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
| | - Charles T Hunter
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
| | - Norman Best
- Plant Genetics Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Columbia, MO, USA
| | - Eric Soubeyrand
- Molecular and Cellular Biology Department, University of Guelph, Guelph, ON, Canada
| | - Tariq A Akhtar
- Molecular and Cellular Biology Department, University of Guelph, Guelph, ON, Canada
| | - Gilles J Basset
- Department of Horticultural Sciences, University of Florida, Gainesville, FL, USA
| | - Anna K Block
- Chemistry Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, USA
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Yu J, Tu X, Huang AC. Functions and biosynthesis of plant signaling metabolites mediating plant-microbe interactions. Nat Prod Rep 2022; 39:1393-1422. [PMID: 35766105 DOI: 10.1039/d2np00010e] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Covering: 2015-2022Plants and microbes have coevolved since their appearance, and their interactions, to some extent, define plant health. A reasonable fraction of small molecules plants produced are involved in mediating plant-microbe interactions, yet their functions and biosynthesis remain fragmented. The identification of these compounds and their biosynthetic genes will open up avenues for plant fitness improvement by manipulating metabolite-mediated plant-microbe interactions. Herein, we integrate the current knowledge on their chemical structures, bioactivities, and biosynthesis with the view of providing a high-level overview on their biosynthetic origins and evolutionary trajectory, and pinpointing the yet unknown and key enzymatic steps in diverse biosynthetic pathways. We further discuss the theoretical basis and prospects for directing plant signaling metabolite biosynthesis for microbe-aided plant health improvement in the future.
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Affiliation(s)
- Jingwei Yu
- Key Laboratory of Molecular Design for Plant Cell Factory of Guangdong Higher Education Institutes, SUSTech-PKU Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
| | - Xingzhao Tu
- Key Laboratory of Molecular Design for Plant Cell Factory of Guangdong Higher Education Institutes, SUSTech-PKU Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
| | - Ancheng C Huang
- Key Laboratory of Molecular Design for Plant Cell Factory of Guangdong Higher Education Institutes, SUSTech-PKU Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
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32
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Tiedge K, Destremps J, Solano-Sanchez J, Arce-Rodriguez ML, Zerbe P. Foxtail mosaic virus-induced gene silencing (VIGS) in switchgrass (Panicum virgatum L.). PLANT METHODS 2022; 18:71. [PMID: 35644680 PMCID: PMC9150325 DOI: 10.1186/s13007-022-00903-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 05/07/2022] [Indexed: 05/08/2023]
Abstract
BACKGROUND Although the genome for the allotetraploid bioenergy crop switchgrass (Panicum virgatum) has been established, limitations in mutant resources have hampered in planta gene function studies toward crop optimization. Virus-induced gene silencing (VIGS) is a versatile technique for transient genetic studies. Here we report the implementation of foxtail mosaic virus (FoMV)-mediated gene silencing in switchgrass in above- and below-ground tissues and at different developmental stages. RESULTS The study demonstrated that leaf rub-inoculation is a suitable method for systemic gene silencing in switchgrass. For all three visual marker genes, Magnesium chelatase subunit D (ChlD) and I (ChlI) as well as phytoene desaturase (PDS), phenotypic changes were observed in leaves, albeit at different intensities. Gene silencing efficiency was verified by RT-PCR for all tested genes. Notably, systemic gene silencing was also observed in roots, although silencing efficiency was stronger in leaves (~ 63-94%) as compared to roots (~ 48-78%). Plants at a later developmental stage were moderately less amenable to VIGS than younger plants, but also less perturbed by the viral infection. CONCLUSIONS Using FoMV-mediated VIGS could be achieved in switchgrass leaves and roots, providing an alternative approach for studying gene functions and physiological traits in this important bioenergy crop.
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Affiliation(s)
- Kira Tiedge
- Department of Plant Biology, University of California, Davis, USA.
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands.
| | | | | | | | - Philipp Zerbe
- Department of Plant Biology, University of California, Davis, USA
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33
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Murphy KM, Poretsky E, Liu H, Micic N, Nyhuis A, Bohlmann J, Schmelz EA, Zerbe P, Huffaker A, Bjarnholt N. Shielding the oil reserves: the scutellum as a source of chemical defenses. PLANT PHYSIOLOGY 2022; 188:1944-1949. [PMID: 35139208 PMCID: PMC8968280 DOI: 10.1093/plphys/kiac038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 12/23/2021] [Indexed: 06/14/2023]
Abstract
The cereal scutellum is a hub for diverse specialized defense metabolism and pathway discovery.
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Affiliation(s)
| | | | - Huijun Liu
- Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10, DK-8000 Aarhus C, Denmark
- Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg 1871, Denmark
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg 1871, Denmark
| | - Nikola Micic
- Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg 1871, Denmark
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg 1871, Denmark
| | - Annika Nyhuis
- Bruker Daltonik GmbH & Co. KG, Bremen 28359, Germany
| | - Joerg Bohlmann
- Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Eric A Schmelz
- Section of Cell and Developmental Biology, University of California at San Diego, La Jolla, California 92161, USA
| | - Philipp Zerbe
- Department of Plant Biology, University of California Davis, One Shields Avenue, Davis, California 95616, USA
| | - Alisa Huffaker
- Section of Cell and Developmental Biology, University of California at San Diego, La Jolla, California 92161, USA
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Meng X, Zhang Y, Wang N, He H, Tan Q, Wen B, Zhang R, Sun M, Zhao X, Fu X, Li D, Lu W, Chen X, Li L. Prunus persica Terpene Synthase PpTPS1 Interacts with PpABI5 to Enhance Salt Resistance in Transgenic Tomatoes. FRONTIERS IN PLANT SCIENCE 2022; 13:807342. [PMID: 35283925 PMCID: PMC8905318 DOI: 10.3389/fpls.2022.807342] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
Terpene synthase (TPS) is related to the production of aromatic substances, but there are few studies on the impact of abiotic stress on TPS and its molecular mechanism, especially in peaches. This study found that salt resistance and abscisic acid (ABA) sensitivity of transgenic tomatoes were enhanced by overexpression of PpTPS1. Moreover, it was found that PpTPS1 interacted with and antagonized the expression of the bZIP transcription factor ABA INSENSITIVE 5 (PpABI5), which is thought to play an important role in salt suitability. In addition, PpTCP1, PpTCP13, and PpTCP15 were found to activate the expression of PpTPS1 by yeast one-hybrid (Y1H) and dual-luciferase assays, and they could also be induced by ABA. In summary, PpTPS1 may be involved in the ABA signaling regulatory pathway and play an important role in salt acclimation, providing a new reference gene for the improvement of salt resistance in peaches.
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Affiliation(s)
- Xiangguang Meng
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Yuzheng Zhang
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Ning Wang
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Huajie He
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Qiuping Tan
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Binbin Wen
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Rui Zhang
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Mingyue Sun
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Xuehui Zhao
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Xiling Fu
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Dongmei Li
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Wenli Lu
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Xiude Chen
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
| | - Ling Li
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, China
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an, China
- Shandong Collaborative Innovation Center for Fruit & Vegetable Production With High Quality and Efficiency, Shandong Agricultural University, Tai’an, China
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35
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Förster C, Handrick V, Ding Y, Nakamura Y, Paetz C, Schneider B, Castro-Falcón G, Hughes CC, Luck K, Poosapati S, Kunert G, Huffaker A, Gershenzon J, Schmelz EA, Köllner TG. Biosynthesis and antifungal activity of fungus-induced O-methylated flavonoids in maize. PLANT PHYSIOLOGY 2022; 188:167-190. [PMID: 34718797 PMCID: PMC8774720 DOI: 10.1093/plphys/kiab496] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 09/30/2021] [Indexed: 05/05/2023]
Abstract
Fungal infection of grasses, including rice (Oryza sativa), sorghum (Sorghum bicolor), and barley (Hordeum vulgare), induces the formation and accumulation of flavonoid phytoalexins. In maize (Zea mays), however, investigators have emphasized benzoxazinoid and terpenoid phytoalexins, and comparatively little is known about flavonoid induction in response to pathogens. Here, we examined fungus-elicited flavonoid metabolism in maize and identified key biosynthetic enzymes involved in the formation of O-methylflavonoids. The predominant end products were identified as two tautomers of a 2-hydroxynaringenin-derived compound termed xilonenin, which significantly inhibited the growth of two maize pathogens, Fusarium graminearum and Fusarium verticillioides. Among the biosynthetic enzymes identified were two O-methyltransferases (OMTs), flavonoid OMT 2 (FOMT2), and FOMT4, which demonstrated distinct regiospecificity on a broad spectrum of flavonoid classes. In addition, a cytochrome P450 monooxygenase (CYP) in the CYP93G subfamily was found to serve as a flavanone 2-hydroxylase providing the substrate for FOMT2-catalyzed formation of xilonenin. In summary, maize produces a diverse blend of O-methylflavonoids with antifungal activity upon attack by a broad range of fungi.
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Affiliation(s)
- Christiane Förster
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Vinzenz Handrick
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Yezhang Ding
- Section of Cell and Developmental Biology, University of California, San Diego, California 92093-0380, USA
| | - Yoko Nakamura
- Research Group Biosynthesis/NMR, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Christian Paetz
- Research Group Biosynthesis/NMR, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Bernd Schneider
- Research Group Biosynthesis/NMR, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Gabriel Castro-Falcón
- Scripps Institution of Oceanography, University of California, San Diego, California 92093, USA
| | - Chambers C Hughes
- Scripps Institution of Oceanography, University of California, San Diego, California 92093, USA
| | - Katrin Luck
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Sowmya Poosapati
- Section of Cell and Developmental Biology, University of California, San Diego, California 92093-0380, USA
| | - Grit Kunert
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Alisa Huffaker
- Section of Cell and Developmental Biology, University of California, San Diego, California 92093-0380, USA
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
| | - Eric A Schmelz
- Section of Cell and Developmental Biology, University of California, San Diego, California 92093-0380, USA
| | - Tobias G Köllner
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena D-07745, Germany
- Author for communication:
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36
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Comparative analysis of carotenoids and metabolite characteristics in discolored red pepper and normal red pepper based on non-targeted metabolomics. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2021.112398] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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37
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Efficient synthesis of zealexin B1, a maize sesquiterpenoid phytoalexin, viaSuzuki-Miyaura coupling. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.153641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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38
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Shahi A, Mafu S. Specialized metabolites as mediators for plant-fungus crosstalk and their evolving roles. CURRENT OPINION IN PLANT BIOLOGY 2021; 64:102141. [PMID: 34814027 PMCID: PMC8671350 DOI: 10.1016/j.pbi.2021.102141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 10/10/2021] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
Plants, fungi, and bacteria produce numerous natural products with bioactive properties essential for ecological adaptation. Because of their chemical complexity, these natural products have been adapted for diverse applications in industry. The discovery of their biosynthetic pathways has been accelerated due to improved 'omics' approaches, metabolic engineering, and the availability of genetic manipulation techniques. Ongoing research into these metabolites is not only resolving the enzymatic diversity underlying their biosynthesis but also delving into the physiological and mechanistic basis of their modes of action. This review highlights progress made in the elucidation of biosynthetic pathways and biological roles of specialized metabolites, focusing on some that play important roles at the interface of plant-fungus interactions.
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Affiliation(s)
- Ayousha Shahi
- Plant Biology Graduate Program, University of Massachusetts-Amherst, 240 Thatcher Way, Life Science Laboratories, Amherst, MA 01003, USA
| | - Sibongile Mafu
- Plant Biology Graduate Program, University of Massachusetts-Amherst, 240 Thatcher Way, Life Science Laboratories, Amherst, MA 01003, USA; Department of Biochemistry and Molecular Biology, University of Massachusetts - Amherst, 240 Thatcher Way, Life Science Laboratories, Amherst, MA 01003, USA.
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39
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Muchlinski A, Jia M, Tiedge K, Fell JS, Pelot KA, Chew L, Davisson D, Chen Y, Siegel J, Lovell JT, Zerbe P. Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:1053-1068. [PMID: 34514645 PMCID: PMC9292899 DOI: 10.1111/tpj.15492] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 09/02/2021] [Accepted: 09/07/2021] [Indexed: 05/02/2023]
Abstract
Specialized diterpenoid metabolites are important mediators of plant-environment interactions in monocot crops. To understand metabolite functions in plant environmental adaptation that ultimately can enable crop improvement strategies, a deeper knowledge of the underlying species-specific biosynthetic pathways is required. Here, we report the genomics-enabled discovery of five cytochrome P450 monooxygenases (CYP71Z25-CYP71Z29) that form previously unknown furanoditerpenoids in the monocot bioenergy crop Panicum virgatum (switchgrass). Combinatorial pathway reconstruction showed that CYP71Z25-CYP71Z29 catalyze furan ring addition directly to primary diterpene alcohol intermediates derived from distinct class II diterpene synthase products. Transcriptional co-expression patterns and the presence of select diterpenoids in switchgrass roots support the occurrence of P450-derived furanoditerpenoids in planta. Integrating molecular dynamics, structural analysis and targeted mutagenesis identified active site determinants that contribute to the distinct catalytic specificities underlying the broad substrate promiscuity of CYP71Z25-CYP71Z29 for native and non-native diterpenoids.
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Affiliation(s)
- Andrew Muchlinski
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
- Present address:
Firmenich Inc.4767 Nexus Center Dr.San DiegoCalifornia9212USA
| | - Meirong Jia
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
- Present address:
State Key Laboratory of Bioactive Substance and Function of Natural Medicines & NHC Key Laboratory of Biosynthesis of Natural ProductsInstitute of Materia MedicaChinese Academy of Medical Sciences & Peking Union Medical CollegeBeijing100050China
| | - Kira Tiedge
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
| | - Jason S. Fell
- Genome CenterUniversity of California – DavisDavisCalifornia95616USA
| | - Kyle A. Pelot
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
| | - Lisl Chew
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
| | - Danielle Davisson
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
| | - Yuxuan Chen
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
| | - Justin Siegel
- Genome CenterUniversity of California – DavisDavisCalifornia95616USA
- Department of ChemistryUniversity of California – DavisDavisCalifornia95616USA
- Department of Biochemistry & Molecular MedicineUniversity of California – DavisDavisCalifornia95616USA
| | - John T. Lovell
- Genome Sequencing CenterHudson Alpha Institute for BiotechnologyHuntsvilleAlabama35806USA
| | - Philipp Zerbe
- Department of Plant BiologyUniversity of California – DavisDavisCalifornia95616USA
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40
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Rosenkranz M, Chen Y, Zhu P, Vlot AC. Volatile terpenes - mediators of plant-to-plant communication. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:617-631. [PMID: 34369010 DOI: 10.1111/tpj.15453] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Accepted: 08/03/2021] [Indexed: 06/13/2023]
Abstract
Plants interact with other organisms employing volatile organic compounds (VOCs). The largest group of plant-released VOCs are terpenes, comprised of isoprene, monoterpenes, and sesquiterpenes. Mono- and sesquiterpenes are well-known communication compounds in plant-insect interactions, whereas the smallest, most commonly emitted terpene, isoprene, is rather assigned a function in combating abiotic stresses. Recently, it has become evident that different volatile terpenes also act as plant-to-plant signaling cues. Upon being perceived, specific volatile terpenes can sensitize distinct signaling pathways in receiver plant cells, which in turn trigger plant innate immune responses. This vastly extends the range of action of volatile terpenes, which not only protect plants from various biotic and abiotic stresses, but also convey information about environmental constraints within and between plants. As a result, plant-insect and plant-pathogen interactions, which are believed to influence each other through phytohormone crosstalk, are likely equally sensitive to reciprocal regulation via volatile terpene cues. Here, we review the current knowledge of terpenes as volatile semiochemicals and discuss why and how volatile terpenes make good signaling cues. We discuss how volatile terpenes may be perceived by plants, what are possible downstream signaling events in receiver plants, and how responses to different terpene cues might interact to orchestrate the net plant response to multiple stresses. Finally, we discuss how the signal can be further transmitted to the community level leading to a mutually beneficial community-scale response or distinct signaling with near kin.
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Affiliation(s)
- Maaria Rosenkranz
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum Muenchen, 85764, Neuherberg, Germany
| | - Yuanyuan Chen
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum Muenchen, 85764, Neuherberg, Germany
| | - Peiyuan Zhu
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum Muenchen, 85764, Neuherberg, Germany
| | - A Corina Vlot
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum Muenchen, 85764, Neuherberg, Germany
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41
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Hansen CC, Nelson DR, Møller BL, Werck-Reichhart D. Plant cytochrome P450 plasticity and evolution. MOLECULAR PLANT 2021; 14:1244-1265. [PMID: 34216829 DOI: 10.1016/j.molp.2021.06.028] [Citation(s) in RCA: 107] [Impact Index Per Article: 35.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Revised: 05/28/2021] [Accepted: 06/30/2021] [Indexed: 05/27/2023]
Abstract
The superfamily of cytochrome P450 (CYP) enzymes plays key roles in plant evolution and metabolic diversification. This review provides a status on the CYP landscape within green algae and land plants. The 11 conserved CYP clans known from vascular plants are all present in green algae and several green algae-specific clans are recognized. Clan 71, 72, and 85 remain the largest CYP clans and include many taxa-specific CYP (sub)families reflecting emergence of linage-specific pathways. Molecular features and dynamics of CYP plasticity and evolution are discussed and exemplified by selected biosynthetic pathways. High substrate promiscuity is commonly observed for CYPs from large families, favoring retention of gene duplicates and neofunctionalization, thus seeding acquisition of new functions. Elucidation of biosynthetic pathways producing metabolites with sporadic distribution across plant phylogeny reveals multiple examples of convergent evolution where CYPs have been independently recruited from the same or different CYP families, to adapt to similar environmental challenges or ecological niches. Sometimes only a single or a few mutations are required for functional interconversion. A compilation of functionally characterized plant CYPs is provided online through the Plant P450 Database (erda.dk/public/vgrid/PlantP450/).
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Affiliation(s)
- Cecilie Cetti Hansen
- Plant Biochemistry Laboratory, Department of Plant and Environmental Science, University of Copenhagen, Copenhagen, Denmark; VILLUM Research Center for Plant Plasticity, University of Copenhagen, Copenhagen, Denmark.
| | - David R Nelson
- Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, USA
| | - Birger Lindberg Møller
- Plant Biochemistry Laboratory, Department of Plant and Environmental Science, University of Copenhagen, Copenhagen, Denmark; VILLUM Research Center for Plant Plasticity, University of Copenhagen, Copenhagen, Denmark
| | - Daniele Werck-Reichhart
- Institute of Plant Molecular Biology, Centre National de la Recherche Scientifique (CNRS), University of Strasbourg, Strasbourg, France.
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42
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Medeiros DB, Brotman Y, Fernie AR. The utility of metabolomics as a tool to inform maize biology. PLANT COMMUNICATIONS 2021; 2:100187. [PMID: 34327322 PMCID: PMC8299083 DOI: 10.1016/j.xplc.2021.100187] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 03/26/2021] [Accepted: 04/19/2021] [Indexed: 05/04/2023]
Abstract
With the rise of high-throughput omics tools and the importance of maize and its products as food and bioethanol, maize metabolism has been extensively explored. Modern maize is still rich in genetic and phenotypic variation, yielding a wide range of structurally and functionally diverse metabolites. The maize metabolome is also incredibly dynamic in terms of topology and subcellular compartmentalization. In this review, we examine a broad range of studies that cover recent developments in maize metabolism. Particular attention is given to current methodologies and to the use of metabolomics as a tool to define biosynthetic pathways and address biological questions. We also touch upon the use of metabolomics to understand maize natural variation and evolution, with a special focus on research that has used metabolite-based genome-wide association studies (mGWASs).
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Affiliation(s)
- David B. Medeiros
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - Yariv Brotman
- Department of Life Sciences, Ben-Gurion University of the Negev, Beersheva, Israel
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Liang J, Shen Q, Wang L, Liu J, Fu J, Zhao L, Xu M, Peters RJ, Wang Q. Rice contains a biosynthetic gene cluster associated with production of the casbane-type diterpenoid phytoalexin ent-10-oxodepressin. THE NEW PHYTOLOGIST 2021; 231:85-93. [PMID: 33892515 PMCID: PMC9044444 DOI: 10.1111/nph.17406] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 04/14/2021] [Indexed: 05/03/2023]
Abstract
Diterpenoids play important roles in rice microbial disease resistance as phytoalexins, as well as acting in allelopathy and abiotic stress responses. Recently, the casbane-type phytoalexin ent-10-oxodepressin was identified in rice, but its biosynthesis has not yet been elucidated. Here ent-10-oxodepressin biosynthesis was investigated via co-expression analysis and biochemical characterisation, with use of the CRISPR/Cas9 technology for genetic analysis. The results identified a biosynthetic gene cluster (BGC) on rice chromosome 7 (c7BGC), containing the relevant ent-casbene synthase (OsECBS), and four cytochrome P450 (CYP) genes from the CYP71Z subfamily. Three of these CYPs were shown to act on ent-casbene, with CYP71Z2 able to produce a keto group at carbon-5 (C5), while the closely related paralogues CYP71Z21 and CYP71Z22 both readily produce a keto group at C10. Together these C5 and C10 oxidases can elaborate ent-casbene to ent-10-oxodepressin (5,10-diketo-ent-casbene). OsECBS knockout lines no longer produce casbane-type diterpenoids and exhibit impaired resistance to the rice fungal blast pathogen Magnaporthe oryzae. Elucidation of ent-10-oxodepressin biosynthesis and the associated c7BGC provides not only a potential target for molecular breeding, but also, gives the intriguing parallels to the independently assembled BGCs for casbene-derived diterpenoids in the Euphorbiaceae, further insight into plant BGC evolution, as discussed here.
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Affiliation(s)
- Jin Liang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Qinqin Shen
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Liping Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Jiang Liu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Jingye Fu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Le Zhao
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Meimei Xu
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Reuben J Peters
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Qiang Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
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Ding Y, Northen TR, Khalil A, Huffaker A, Schmelz EA. Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience. Curr Opin Biotechnol 2021; 70:174-186. [PMID: 34129999 DOI: 10.1016/j.copbio.2021.05.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 05/06/2021] [Accepted: 05/31/2021] [Indexed: 12/12/2022]
Abstract
Roots remain an understudied site of complex and important biological interactions mediating plant productivity. In grain and bioenergy crops, grass root specialized metabolites (GRSM) are central to key interactions, yet our basic knowledge of the chemical language remains fragmentary. Continued improvements in plant genome assembly and metabolomics are enabling large-scale advances in the discovery of specialized metabolic pathways as a means of regulating root-biotic interactions. Metabolomics, transcript coexpression analyses, forward genetic studies, gene synthesis and heterologous expression assays drive efficient pathway discoveries. Functional genetic variants identified through genome wide analyses, targeted CRISPR/Cas9 approaches, and both native and non-native overexpression studies critically inform novel strategies for bioengineering metabolic pathways to improve plant traits.
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Affiliation(s)
- Yezhang Ding
- Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Trent R Northen
- Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Joint BioEnergy Institute, Emeryville, CA 94608, USA
| | - Ahmed Khalil
- Section of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA, USA
| | - Alisa Huffaker
- Section of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA, USA
| | - Eric A Schmelz
- Section of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA, USA.
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Biochemistry of Terpenes and Recent Advances in Plant Protection. Int J Mol Sci 2021; 22:ijms22115710. [PMID: 34071919 PMCID: PMC8199371 DOI: 10.3390/ijms22115710] [Citation(s) in RCA: 70] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 05/20/2021] [Accepted: 05/24/2021] [Indexed: 01/23/2023] Open
Abstract
Biodiversity is adversely affected by the growing levels of synthetic chemicals released into the environment due to agricultural activities. This has been the driving force for embracing sustainable agriculture. Plant secondary metabolites offer promising alternatives for protecting plants against microbes, feeding herbivores, and weeds. Terpenes are the largest among PSMs and have been extensively studied for their potential as antimicrobial, insecticidal, and weed control agents. They also attract natural enemies of pests and beneficial insects, such as pollinators and dispersers. However, most of these research findings are shelved and fail to pass beyond the laboratory and greenhouse stages. This review provides an overview of terpenes, types, biosynthesis, and their roles in protecting plants against microbial pathogens, insect pests, and weeds to rekindle the debate on using terpenes for the development of environmentally friendly biopesticides and herbicides.
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Mu X, Li J, Dai Z, Xu L, Fan T, Jing T, Chen M, Gou M. Commonly and Specifically Activated Defense Responses in Maize Disease Lesion Mimic Mutants Revealed by Integrated Transcriptomics and Metabolomics Analysis. FRONTIERS IN PLANT SCIENCE 2021; 12:638792. [PMID: 34079566 PMCID: PMC8165315 DOI: 10.3389/fpls.2021.638792] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 03/29/2021] [Indexed: 06/12/2023]
Abstract
Disease lesion mimic (Les/les) mutants display disease-like spontaneous lesions in the absence of pathogen infection, implying the constitutive activation of defense responses. However, the genetic and biochemical bases underlying the activated defense responses in those mutants remain largely unknown. Here, we performed integrated transcriptomics and metabolomics analysis on three typical maize Les mutants Les4, Les10, and Les17 with large, medium, and small lesion size, respectively, thereby dissecting the activated defense responses at the transcriptional and metabolomic level. A total of 1,714, 4,887, and 1,625 differentially expressed genes (DEGs) were identified in Les4, Les10, and Les17, respectively. Among them, 570, 3,299, and 447 specific differentially expressed genes (SGs) were identified, implying a specific function of each LES gene. In addition, 480 common differentially expressed genes (CGs) and 42 common differentially accumulated metabolites (CMs) were identified in all Les mutants, suggesting the robust activation of shared signaling pathways. Intriguingly, substantial analysis of the CGs indicated that genes involved in the programmed cell death, defense responses, and phenylpropanoid and terpenoid biosynthesis were most commonly activated. Genes involved in photosynthetic biosynthesis, however, were generally repressed. Consistently, the dominant CMs identified were phenylpropanoids and flavonoids. In particular, lignin, the phenylpropanoid-based polymer, was significantly increased in all three mutants. These data collectively imply that transcriptional activation of defense-related gene expression; increase of phenylpropanoid, lignin, flavonoid, and terpenoid biosynthesis; and inhibition of photosynthesis are generalnatures associated with the lesion formation and constitutively activated defense responses in those mutants. Further studies on the identified SGs and CGs will shed new light on the function of each LES gene as well as the regulatory network of defense responses in maize.
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Affiliation(s)
| | | | | | | | | | | | | | - Mingyue Gou
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, China
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Liu N, Lin F, Chen J, Shao Z, Zhang X, Zhu L. Multistage Defense System Activated by Tetrachlorobiphenyl and its Hydroxylated and Methoxylated Derivatives in Oryza sativa. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:4889-4898. [PMID: 33750107 DOI: 10.1021/acs.est.0c08265] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Crops can initiate various defense responses to environmental stresses. The process is often accompanied by extensive transcriptional and metabolic changes to reallocate metabolites. However, it remains unclear how organic pollutants activate the defense systems to reallocate metabolites in crops. The current study demonstrates that three defense systems, including the cytochrome P450s (CYP450s), glutathione S-transferases (GSTs), and phenylpropanoid biosynthesis, were sequentially activated after Oryza sativa was exposed to 2,3,4,5-tetrachlorobipheny l (PCB 61) and its derivatives 4'-hydroxy-2,3,4,5-tetrachlorobiphenyl (OH-PCB 61) and 4'-methoxy-2,3,4,5-tetrachlorobiphenyl (MeO-PCB 61), respectively. Genes encoding CYP76Ms and CYP72As were significantly upregulated after 0.5 h of exposure, followed by the GST-coding gene GSTU48, suggesting that the biotransformation and detoxification of PCB 61, OH-PCB 61, and MeO-PCB 61 occurred. Subsequently, CCR1 and CCR10 involved in phenylpropanoid biosynthesis were activated after 12 h, potentially reducing the oxidative stress induced by PCB 61 and its derivatives. Furthermore, β-d-glucan exohydrolase involved in both phenylpropanoid biosynthesis and starch and sucrose metabolism was significantly downregulated by 7.04-fold in the OH-PCB 61-treated group, potentially contributing to the inhibition of sugar hydrolysis. These findings provide insights into increasing rice adaptability to organic pollutants by reinforcing the enzyme-mediated defense systems, characterizing a novel and critical strategy that enables augmented crop outputs and quality in environments stressed by organic contaminants.
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Affiliation(s)
- Na Liu
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang 310058, China
| | - Fangjing Lin
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang 310058, China
| | - Jie Chen
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang 310058, China
| | - Zexi Shao
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang 310058, China
| | - Xinru Zhang
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang 310058, China
| | - Lizhong Zhu
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang 310058, China
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48
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Zhang J, Li R, Xu M, Hoffmann RI, Zhang Y, Liu B, Zhang M, Yang B, Li Z, Peters RJ. A (conditional) role for labdane-related diterpenoid natural products in rice stomatal closure. THE NEW PHYTOLOGIST 2021; 230:698-709. [PMID: 33458815 PMCID: PMC7969454 DOI: 10.1111/nph.17196] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 12/17/2020] [Indexed: 05/18/2023]
Abstract
Rice (Oryza sativa) is the staple food for over half the world's population. Drought stress imposes major constraints on rice yields. Intriguingly, labdane-related diterpenoid (LRD) phytoalexins in maize (Zea mays) affect drought tolerance, as indicated by the increased susceptibility of an insertion mutant of the class II diterpene cyclase ZmCPS2/An2 that initiates such biosynthesis. Rice also produces LRD phytoalexins, utilizing OsCPS2 and OsCPS4 to initiate a complex metabolic network. For genetic studies of rice LRD biosynthesis the fast-growing Kitaake cultivar was selected for targeted mutagenesis via CRISPR/Cas9, with an initial focus on OsCPS2 and OsCPS4. The resulting cps2 and cps4 knockout lines were further crossed to create a cps2x4 double mutant. Both CPSs also were overexpressed. Strikingly, all of the cv Kitaake cps mutants exhibit significantly increased susceptibility to drought, which was associated with reduced stomatal closure that was evident even under well-watered conditions. However, CPS overexpression did not increase drought resistance, and cps mutants in other cultivars did not alter susceptibility to drought, although these also exhibited lesser effects on LRD production. The results suggest that LRDs may act as a regulatory switch that triggers stomatal closure in rice, which might reflect the role of these openings in microbial entry.
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Affiliation(s)
- Juan Zhang
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Riqing Li
- Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, U.S.A
| | - Meimei Xu
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
| | - Rachel I. Hoffmann
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
| | - Yushi Zhang
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Bo Liu
- Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, U.S.A
| | - Mingcai Zhang
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Bing Yang
- Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, U.S.A
- Donald Danforth Plant Science Center, St. Louis, MO 63132, U.S.A
| | - Zhaohu Li
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
- College of Plant Science and Technology, Huazhong Agriculture University, Wuhan 430070, Hubei, China
| | - Reuben J. Peters
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
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The plant metabolome guides fitness-relevant foraging decisions of a specialist herbivore. PLoS Biol 2021; 19:e3001114. [PMID: 33600420 PMCID: PMC7924754 DOI: 10.1371/journal.pbio.3001114] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 03/02/2021] [Accepted: 01/26/2021] [Indexed: 01/01/2023] Open
Abstract
Plants produce complex mixtures of primary and secondary metabolites. Herbivores use these metabolites as behavioral cues to increase their fitness. However, how herbivores combine and integrate different metabolite classes into fitness-relevant foraging decisions in planta is poorly understood. We developed a molecular manipulative approach to modulate the availability of sugars and benzoxazinoid secondary metabolites as foraging cues for a specialist maize herbivore, the western corn rootworm. By disrupting sugar perception in the western corn rootworm and benzoxazinoid production in maize, we show that sugars and benzoxazinoids act as distinct and dynamically combined mediators of short-distance host finding and acceptance. While sugars improve the capacity of rootworm larvae to find a host plant and to distinguish postembryonic from less nutritious embryonic roots, benzoxazinoids are specifically required for the latter. Host acceptance in the form of root damage is increased by benzoxazinoids and sugars in an additive manner. This pattern is driven by increasing damage to postembryonic roots in the presence of benzoxazinoids and sugars. Benzoxazinoid- and sugar-mediated foraging directly improves western corn rootworm growth and survival. Interestingly, western corn rootworm larvae retain a substantial fraction of their capacity to feed and survive on maize plants even when both classes of chemical cues are almost completely absent. This study unravels fine-grained differentiation and combination of primary and secondary metabolites into herbivore foraging and documents how the capacity to compensate for the lack of important chemical cues enables a specialist herbivore to survive within unpredictable metabolic landscapes.
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50
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Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan V, Northen TR, Zerbe P. Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Sci Rep 2021; 11:333. [PMID: 33431904 PMCID: PMC7801432 DOI: 10.1038/s41598-020-79320-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Accepted: 11/23/2020] [Indexed: 11/15/2022] Open
Abstract
Plants deploy both primary and species-specific, specialized metabolites to communicate with other organisms and adapt to environmental challenges, including interactions with soil-dwelling microbial communities. However, the role of specialized metabolites in modulating plant-microbiome interactions often remains elusive. In this study, we report that maize (Zea mays) diterpenoid metabolites with known antifungal bioactivities also influence rhizosphere bacterial communities. Metabolite profiling showed that dolabralexins, antibiotic diterpenoids that are highly abundant in roots of some maize varieties, can be exuded from the roots. Comparative 16S rRNA gene sequencing determined the bacterial community composition of the maize mutant Zman2 (anther ear 2), which is deficient in dolabralexins and closely related bioactive kauralexin diterpenoids. The Zman2 rhizosphere microbiome differed significantly from the wild-type sibling with the most significant changes observed for Alphaproteobacteria of the order Sphingomonadales. Metabolomics analyses support that these differences are attributed to the diterpenoid deficiency of the Zman2 mutant, rather than other large-scale metabolome alterations. Together, these findings support physiological functions of maize diterpenoids beyond known chemical defenses, including the assembly of the rhizosphere microbiome.
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Affiliation(s)
- Katherine M Murphy
- Department of Plant Biology, University of California-Davis, One Shields Avenue, Davis, CA, USA.
| | - Joseph Edwards
- Integrative Biology, University of Texas, Austin, 2405 Speedway, Austin, TX, USA
| | - Katherine B Louie
- Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Benjamin P Bowen
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, M/S 100PFG100, 1 Cyclotron Road, Berkeley, CA, 94720, USA
- Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Venkatesan Sundaresan
- Department of Plant Biology, University of California-Davis, One Shields Avenue, Davis, CA, USA
| | - Trent R Northen
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, M/S 100PFG100, 1 Cyclotron Road, Berkeley, CA, 94720, USA
- Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Philipp Zerbe
- Department of Plant Biology, University of California-Davis, One Shields Avenue, Davis, CA, USA
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