The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury

Uptake, impact, adaptive mechanisms, and phytoremediation of heavy metals by plants: Role of transporters in heavy metal sequestration

Heavy metals (HMs) pose severe threats to both the environment and its inhabitants, leading to reduced crop productivity and hazardous impacts on human and animal health. Metallurgical activities in peri-urban areas are major contributors to the terrestrial deposition of various HMs. Upon entering plant the cells, HMs disrupt structural and physiological processes, inducing stress responses and triggering metabolic pathways for stress adaptations. The plants have evolved specialized transport systems to regulate the uptake, transport, and cellular concentrations of these metals. HMs often exploit transporters of essential nutrients, such as phosphate, hexose, and sulfate to gain entry into plant cells. Key players include zinc receptor transporter (ZRT1) and iron receptor transporter (IRT1), both part of the ZIP (Zinc Iron Permease) family, as well as heavy metal-associated ATPases (HMAs) and ATP binding cassette transporter C (ABCC-type transporters). Hyperaccumulating plants thrive in harsh environments with elevated concentrations of toxic ions, such as sodium, chloride, and heavy metals including arsenic (As), mercury (Hg), cadmium (Cd), lead (Pb), silicon (Si), boron (B), antimony (Sb), germanium (Ge), and tellurium (Te), by compartmentalizing these ions into vacuoles. The accumulation of heavy metals or metalloids like cadmium (Cd), lead (Pb), arsenic (As), chromium (Cr), nickel (Ni), manganese (Mn), zinc (Zn), thallium (Tl), cobalt (Co), cupper (Cu), and selenium (Se) has been extensively reported in various hyperaccumulating plant species. The halophytes, known for their inherent salinity tolerance, exhibit superior resilience to HM stress due to overlapping mechanisms of ion compartmentatlization and detoxification. This review provides an in-depth analysis on the effects of heavy metals on the metabolic processes, growth, and development of plants, emphasizing heavy tolerance mechanisms with a particular focus on halophytes. The role of HM transporters in metal sequestration and detoxification is discussed, along with the potential of hyperaccumulating halophytes for phytoremediation of HM-contaminated soils.

Comparative study of organosilicon and inorganic silicon in reducing cadmium accumulation in wheat: Insights into rhizosphere microbial communities and molecular regulation mechanisms

Silicon is widely used as a "quality element" and "stress resistance element" in crop production and the remediation of heavy metal-contamination soils. Compared to inorganic silicon, organosilicon has unique properties such as amphiphilicity, low surface energy and high biocompatibility. Our previous research has confirmed the effectiveness of organosilicon-modified fertilizers in inhibiting Cadmium (Cd) absorption in wheat. Therefore, it is of great importance to further explore the potential mechanisms and comprehensive benefits of organosilicon. In this study, the microbiological and molecular mechanisms by which organosilicon reduces Cd concentration in wheat compared to inorganic silicon were investigated in depth. The findings indicated that, in comparison with inorganic silicon, organosilicon exhibited a more remarkable efficacy. Specifically, it was more effective in reducing the Cd concentration in wheat grains, achieving a reduction range of 35-39 % as opposed to the 23-28 % reduction achieved by inorganic silicon. Moreover, it manifested a greater ability to mitigate health risks, with a reduction range of 33-42 % compared to the 25-30 % reduction of inorganic silicon. Furthermore, organosilicon contributed to a significant increase in wheat yield, with a growth range of 11-14 % in contrast to the 8-11 % increase from inorganic silicon. Additionally, it enhanced the quality of the grains, substantially improving the protein content and amino acid content. The comparative advantages of organosilicon over inorganic silicon would be firstly due to the reduction of the bioavailability of soil Cd by increasing the available silicon content in the soil and improving the soil microbial ecology (increasing the abundance of Bacillus, Pseudomonas, Massilia and Talaromyces and reducing the enrichment of Fusarium). Secondly, organosilicon achieved vacuolar compartmentalization of Cd by upregulating the expression of the ABC transporter gene (TaABCB7), thereby alleviating Cd toxicity and restricting Cd transport from leaves to grains. Meanwhile, organosilicon increased the wheat yield by optimizing the availability of soil nutrients and enhancing photosynthesis. These results demonstrate the immense potential of organosilicon in mitigating heavy metal contamination in crops.

Transcriptome profiles of leaves and roots of Brassica napus L. in response to antimony stress

Antimony (Sb), a non-essential heavy metal, exerts severe toxic effects on the growth and development of plants. This study investigated the response of Brassica napus to Sb(III) stress under hydroponic conditions, focusing on Sb accumulation, physiological indexes, and transcriptome sequencing. Sb accumulation in different B. napus varieties showed consistent trends with physiological indicators (SOD, POD, CAT, MDA) in XZY512 root tissue. Both parameters increased with Sb concentration, reaching a peak at 75 mg/L before declining, suggesting that 75 mg/L Sb may be the optimal concentration for B. napus adaptation. Transcriptomic analysis identified 8,802 genes in root tissues and 13,612 genes in leaf tissues responsive to Sb stress, predominantly involved in oxidative stress responses, ABC transporters, glutathione metabolism, plant hormone signaling, and MAPK pathways. Physiological index changes were associated with upregulation of genes linked to antioxidants, including as CATs, GPXs, PERs, and GSTUs, in root tissues, whereas photosynthesis-related genes were mostly downregulated in leaf tissues. This work shows the potential of B. napus for phytoremediation efforts and offers important insights into its response mechanisms to Sb stress.

Exploring the role of ATP-binding cassette transporters in tomato (Solanum lycopersicum) under cadmium stress through genome-wide and transcriptomic analysis

ATP-binding cassette (ABC) transporters are integral membrane proteins involved in the active transport of various substrates, including heavy metals, across cellular membrane. In this study, we performed a genome-wide analysis and explored the expression profiles of ABC transporter genes in Solanum lycopersicum to identify their role in cadmium (Cd) stress tolerance. Several techniques were employed to determine the regulatory role of ABC transporters. A total of 154 ABC transporter genes were identified in the genome of S. lycopersicum, located on all 12 chromosomes. Comparative phylogenetic analysis between S. lycopersicum and Arabidopsis thaliana revealed several orthologous gene pairs, which were duly supported by the structural analysis of the genes by studying the exon-intron pattern and motif analysis. Collinearity analysis revealed multiple gene duplication events owing to intra-chromosomal and inter-chromosomal mutations. The cis-regulatory analysis identified several hormone-responsive elements suggesting that ABCs are actively involved in transporting hormones like ABA, SA, MeJA, auxin, and gibberellin. These hormones are known to combat a number of stress conditions, hence validating the role of ABCs in Cd stress. Under Cd stress, expression profiling demonstrated that several SlABCs exhibit significant transcriptional changes, indicating their involvement in Cd transport, sequestration, and detoxification mechanisms. Specific genes, including Groups 3 and 5 members, were upregulated under Cd exposure, suggesting their functional roles in mitigating Cd toxicity. The study revealed differential expressions of various SlABC genes encoding ATP binding cassette transporters, including the upregulation of several genes like Solyc08g067620.2, Solyc08g067610.3, Solyc12g019640.2, Solyc06g036240.2, and Solyc05g053610.2 in response to different concentrations of Cd. This study comprehensively explains the ABC transporter gene family in S. lycopersicum, emphasizing their critical roles in Cd stress tolerance. This study could prove useful in combating Cd stress not only in S. lycopersicum but also in other fleshy fruit plants; however, further advanced studies on specific pathways that lead to differential expression of the ABC genes are required to understand the mechanism behind tolerance to heavy metals fully.

Overexpression of ZmSKD1 improves cadmium tolerance through the vesicle trafficking pathway in tobacco

Cadmium (Cd) is a major soil pollutant that threatens plant growth and human health. The plant ATPase associated with various cellular activities (AAA) SKD1 utilizes ATP hydrolysis energy to mediate cellular responses to environmental stress. However, the role and regulatory mechanisms of SKD1 in plant responses to Cd stress are not well understood. This study has demonstrated that the maize SKD1 gene (ZmSKD1) enhanced tobacco's tolerance to Cd stress. Overexpression of ZmSKD1 in tobacco reduced Cd accumulation and improved Cd tolerance. Moreover, ZmSKD1 overexpression enhanced the antioxidant capacity of tobacco, maintaining reactive oxygen species homeostasis and mitigating oxidative damage under Cd stress. The transcription factor AGL8 directly activated ZmSKD1 transcription, which in turn boosted ATPase activity in tobacco. This activation enhanced vesicle trafficking in root cells and accelerated Cd excretion in transgenic tobacco plants. Concurrently, the AGL8-ZmSKD1 module inhibited the expression of several Cd transport-related genes, thereby reducing Cd uptake by tobacco roots. These findings identified the AGL8-ZmSKD1 module as a crucial player in managing Cd stress through the vesicle trafficking pathway, offering valuable insights into strategies for developing crops with reduced Cd accumulation to ensure global food security and human health.

Multiple insights into differential Cd detoxification mechanisms in new germplasms of mung bean (Vigna radiata L.) and potential mitigation strategy

Long-term cadmium (Cd) exposure inhibits plant growth and development, reduces crop yield and quality, and threatens food security. Exploring the Cd tolerance mechanisms and safe production of crops in Cd-contaminated environment has become a worldwide concern. In this study, mung bean (Vigna radiata L.) cultivar Sulu (SL) and its three mutant lines (20#, 09#, and 06#) were used to compare the difference in Cd absorption, accumulation, and tolerance through pot and field experiments. 20#, 09#, and 06# are Cd-tolerant germplasms of mung bean but exist in different Cd tolerance mechanisms, 20# exhibited the lowest Cd absorption capacity, 09# possessed lower Cd translocation capacity, while 06# accumulated more Cd in protoplasts. Mung bean germplasms with higher Cd tolerance generally showed lower absorption capacity and intracellular accumulation of Cd. Besides, Cd accumulation in mung bean seeds is mainly depended on the absorption and translocation of Cd in roots and the Cd concentration in leaves, exogenous Mn supply inhibited the Cd2+ net influx of roots and Cd accumulation in seeds, this trend was more pronounced in mung bean germplasms with higher Cd accumulation and absorption. Moreover, we characterized a Cd transporter gene VrNramp5, which was differentially expressed in different mung bean lines, overexpression of VrNramp5 increased Cd accumulation and was accompanied by Cd-sensitive phenotype in transgenic mung bean seedlings, and the Cd concentration of mung bean was significantly positively correlated with the expression levels of VrNramp5. Taken together, our findings demonstrated that different Cd tolerance mechanisms exist in mung bean. 20# is the new Cd-tolerant germplasm with low Cd absorption capacity and Cd accumulation in seeds, and has great potential for the safe production of mung bean in Cd-contaminated soils and the breeding of low Cd accumulation crop cultivars.

Integrative analysis of the ABC gene family in sorghum revealed SbABCB11 participating in translocation of cadmium from roots to shoots

MAIN CONCLUSION

This study identified a SbABCB11 gene in sorghum that could enhance Cd translocation from roots to shoots, thus increasing Cd accumulation in shoots. Cadmium (Cd) is a widespread soil contaminant threatening human health. As an energy plant, sorghum (Sorghum bicolor (L.) Moench) has great potential in phytoremediation of Cd-polluted soils. ATP-binding cassette (ABC) transporters perform critical roles in transport of Cd. However, there has not yet been a comprehensive analysis of the ABC gene family in sorghum. In this study, 142 ABC genes in sorghum were identified. Transcriptome study showed 41 SbABCs with differential expression patterns under Cd treatment. Candidate gene-based association study for Cd translocation factors identified five significant SNPs inside the annotated gene SbABCB11. Sequence analysis in different haplotypes demonstrated there were multiple long indel variations in the coding region of SbABCB11. Expression study indicated that SbABCB11-Hap3 was upregulated in roots after Cd treatment. Yeast complementary assay proved that SbABCB11 participated in the efflux of Cd, which was further supported by the localization of SbABCB11 on the plasma membrane. Transient suppression of SbABCB11 via antisense oligodeoxyribonucleotide (asODN) method reduced Cd accumulation in the shoots of sorghum by decreasing the release of Cd into the xylem. Our results provide new insights into the potential roles of SbABCs in sorghum. We revealed that SbABCB11 participated in translocation of Cd from roots to shoots, and there were significant variations in the translocation ability among different haplotypes of SbABCB11. These findings will be of help for the molecular breeding of sorghum germplasms suitable for the phytoremediation of Cd-contaminated soils.

Integration of comparative cytology, ionome, transcriptome and metabolome provide a basic framework for the response of foxtail millet to Cd stress

Apart from directly affecting the growth and development of crops, Cd in the soil can easily enter the human body through the food chain and pose a threat to human health. Therefore, understanding the toxicity of Cd to specific crops and the molecular mechanisms of their response to Cd is essential. In this study, hydroponic experiments were utilized to study the response of foxtail millet to Cd stress through phenotypic investigation, enzyme activity determination, ultrastructure, ionome, transcriptome and metabolome. With the increase in cadmium concentration, both the growth and photosynthetic capacity of foxtail millet seedlings are severely inhibited. The ultrastructure of cells is damaged, cells are deformed, chloroplasts swell and disappear, and cell walls thicken. Cd stress affects the absorption, transport, and redistribution of beneficial metal ions in the seedlings. Multi-omics analysis reveals the crucial roles of glycolysis, glutathione metabolism and phenylpropanoid and lignin biosynthesis pathways in Cd detoxification via energy metabolism, the antioxidant system and cell wall changes. Finally, a schematic diagram of foxtail millet in response to Cd stress was we preliminarily drew. This work provides a basic framework for further revealing the molecular mechanism of Cd tolerance in foxtail millet.

The Effect of Heat Stress on Wheat Flag Leaves Revealed by Metabolome and Transcriptome Analyses During the Reproductive Stage

In this study, we were dedicated to investigating the effect caused by heat stress on wheat flag leaves. Metabolome and transcriptome analysis were introduced to identify some key biological processes. As a result, 182 and 214 metabolites were significantly changed at the anthesis and post-anthesis stages, respectively; most of them were lipids, amino acids and derivatives, phenolic acids, and alkaloids. Aminoacyl-tRNA biosynthesis was the most significantly enriched pathway by metabolites at both two stages, each of which included 13 types of amino acid, and 12 of them were shared and up-regulated. Therefore, we further measured 22 kinds of amino acid content in ten different wheat genotypes at the post-anthesis stage. Based on the average content of each amino acid, 17 kinds of them were significantly increased after heat stress, and 4 types were significantly decreased. Both the metabolism analysis and the transcriptome analysis had a higher number of significantly changed metabolites or differential expressed genes at the post-anthesis stage, which indicated that the post-anthesis stage is more sensitive to heat stress, with 21,361 and 17,130 differential expressed genes, respectively. Two pathways, protein processing in endoplasmic reticulum and ABC transporters, were significantly enriched at two stages. The differential expressed genes in processing in endoplasmic reticulum pathway mainly encoded various types of molecular chaperones; among them, the HSP20 family was the most predominant and intensively up-regulated. The ABC transporter gene family is another pathway that is deeply involved in heat-stress response, which could be classified into five subfamilies; among them, subfamilies B and G were the most active. In summary, this study revealed the heat response pattern of amino acids, HSPs, and ABC transporter which may play a vital role during the wheat reproductive stage.

New insights into uranium stress responses of Arabidopsis roots through membrane- and cell wall-associated proteome analysis

Uranium (U) is a non-essential and toxic metal for plants. In Arabidopsis thaliana plants challenged with uranyl nitrate, we showed that U was mostly (64-71% of the total) associated with the root insoluble fraction containing membrane and cell wall proteins. Therefore, to uncover new molecular mechanisms related to U stress, we used label-free quantitative proteomics to analyze the responses of the root membrane- and cell wall-enriched proteome. Of the 2,802 proteins identified, 458 showed differential accumulation (≥1.5-fold change) in response to U. Biological processes affected by U include response to stress, amino acid metabolism, and previously unexplored functions associated with membranes and the cell wall. Indeed, our analysis supports a dynamic and complex reorganization of the cell wall under U stress, including lignin and suberin synthesis, pectin modification, polysaccharide hydrolysis, and Casparian strips formation. Also, the abundance of proteins involved in vesicular trafficking and water flux was significantly altered by U stress. Measurements of root hydraulic conductivity and leaf transpiration indicated that U significantly decreased the plant's water flux. This disruption in water balance is likely due to a decrease in PIP aquaporin levels, which may serve as a protective mechanism to reduce U toxicity. Finally, the abundance of transporters and metal-binding proteins was altered, suggesting that they may be involved in regulating the fate and toxicity of U in Arabidopsis. Overall, this study highlights how U stress impacts the insoluble root proteome, shedding light on the mechanisms used by plants to mitigate U toxicity.

Homocysteine S-Methyltransferase 3 Positively Regulates Cadmium Tolerance in Maize

The increasing contamination of agricultural soils with cadmium (Cd) poses a significant threat to human health and global food security. Plants initiate a series of mechanisms to reduce Cd toxicity. However, the response of maize to Cd toxicity remains poorly understood. In this study, we identified that ZmHMT3, which encodes a homocysteine S-methyltransferases family protein, acted as a regulator of Cd tolerance in maize. Subcellular localization and in situ PCR exhibited that ZmHMT3 was localized in the cytoplasm and predominantly expressed in the phloem. Overexpression of ZmHMT3 enhanced Cd tolerance and reduced Cd concentration in both shoots and roots. In contrast, ZmHMT3 mutants attenuated Cd tolerance but did not change shoot Cd concentration. Heterologous overexpression of ZmHMT3 in rice enhanced Cd tolerance and reduced grain Cd concentration. Transcriptome analysis revealed that ZmHMT3 upregulated the expression of stress-responsive genes, especially glutathione S-transferases (GSTs) and transcription factors, including MYBs, NACs and WRKYs, and modulates the expression of different ATP-binding cassette (ABC) transporters, thereby enhancing Cd tolerance. Collectively, these findings highlight the pivotal role of ZmHMT3 in Cd tolerance and as a candidate gene for improving Cd tolerance in elite maize varieties.

Silicon reduces lead accumulation in Moso bamboo via immobilization and suppression of metal cation transporter genes in roots

Lead (Pb) is a hazardous element that affects the growth and development of plants, while silicon (Si) is a beneficial element for alleviating the stress caused by heavy metals, including Pb. However, the mechanisms by which Si reduces Pb accumulation in Moso bamboo (Phyllostachys edulis (Carr ·) H · de Lehaie) remain unclear. In this study, physiological assessments and transcriptome analyses were conducted to investigate the interaction between Si and Pb. Our findings showed that Si application has no significant effect on alleviating Pb-induced inhibition of root elongation and dry weight in short-term and long-term experiments, respectively. However, it did rescue leaf yellowing and reduce Pb accumulation, particularly in the shoot. Pre-treatment with Si led to a reduction in Pb uptake, translocation and accumulation, coupled with an increase in Pb fixation within the hemicellulose of the root cell wall, resulting in a lower Pb concentration in the cell sap. At the cellular level, Pb was found to be distributed in all cells of roots, and Si pretreatment did not alter Pb distribution. Additionally, Si application downregulated the expression of genes related to ABC and metal cation transporters. These findings indicate that Si reduces Pb accumulation in Moso bamboo by immobilizing Pb in the hemicellulose of root cell walls and downregulating the expression of transporter genes involved in Pb uptake and transport.

Rice and heavy metals: A review of cadmium impact and potential remediation techniques

In recent decades, the menace of heavy metals to food security and human health has become a serious concern. Given its status as the primary provider of food globally, significant research has been done to ensure the safe cultivation of rice, particularly concerning the mitigation of heavy metal contamination. Therefore, this article focuses on the effects and poisoning mechanism of heavy metals, primarily cadmium, on rice. Here, we have discussed the absorption, translocation, and toxicity mechanism of cadmium in rice and the external factors, such as soil pH, organic matter, microorganisms, and climate change, associated with this pollution. It also discusses in detail the sources of heavy metal pollution and the countermeasures against their effects on rice, such as the use of nanoparticles, biochar, plant growth regulators, nutrient management, molecular approaches, tolerant genotypes, and associated genes/proteins. Lastly, a number of significant research prospects concerning heavy metals in rice fields were suggested for future investigation. This review serves as a crucial reference for addressing the issue of heavy metal contamination in paddy fields, ensuring the safe cultivation of rice, promoting environmentally friendly fish farming practices, and safeguarding future food security and human health.

Phenylmercury stress induces root tip swelling through auxin homeostasis disruption

We previously reported that in Arabidopsis, the phytochelatin-mediated metal-detoxification machinery is also essential for organomercurial phenylmercury (PheHg) tolerance. PheHg treatment causes severe root growth inhibition in cad1-3, an Arabidopsis phytochelatin-deficient mutant, frequently accompanied by abnormal root tip swelling. Here, we examine morphological and physiological characteristics of PheHg-induced abnormal root tip swelling in comparison to Hg(II) stress and demonstrate that auxin homeostasis disorder in the root is associated with the PheHg-induced root tip swelling. Both Hg(II) and PheHg treatments severely inhibited root growth in cad1-3 and simultaneously induced the disappearance of starch-containing plastid amyloplasts in columella cells. However, further confocal imaging of the root tip revealed distinct effects of Hg(II) and PheHg toxicity on root cell morphology. PheHg treatment suppressed most major genes involved in auxin homeostasis, whereas these expression levels were up-regulated after 24 h of Hg(II) treatment. PheHg-triggered suppression of auxin transporters PIN1, PIN2, and PIN3 as GFP-fusion proteins was observed in the root tip, accompanied by an auxin reporter DR5rev::GFP signal reduction. Supplementation of indole-3-acetic acid (IAA) drastically canceled the PheHg-induced root swelling, however, Hg(II) toxicity was not mitigated by IAA. The presented results show that the collapse of auxin homeostasis especially in root tips is a cause for the abnormal root tip swelling under PheHg stress conditions.

Calcium regulates the physiological and molecular responses of Morus alba roots to cadmium stress

Heavy metal cadmium (Cd) is toxic to organisms. Mulberry (Morus alba L.) is a fast-growing perennial that is also an economical Cd phytoremediation material with large biomass. However, the molecular mechanisms underlying its Cd tolerance remain unclear. Here, we reveal the physiological and molecular mechanisms underlying Cd toxicity under varying calcium (Ca) treatments. First, under low-Ca treatment (0.1 mM Ca), mulberry growth was severely inhibited and the root surface structure was damaged by Cd stress. Second, electrophysiological data demonstrated that 0.1 mM Ca induced an increased Cd2+ influx, leading to its accumulation in the entire root and root cell walls. Third, high-Ca treatment (10 mM Ca) largely alleviated growth inhibition, activated antioxidant enzymes, increased Ca content, decreased Cd2+ flux, and inhibited Cd uptake by roots. Finally, 0.1 mM Ca resulted in the activation of metal transporters and the disruption of Ca signaling-related gene expression, which facilitated Cd accumulation in the roots, aggravating oxidative stress. These adverse effects were reversed by treatment with 10 mM Ca. This study preliminarily revealed the mechanism by which varying Ca levels regulate Cd uptake and accumulation in mulberry roots, provided an insight into the interrelationships between Ca and Cd in the ecological and economic tree mulberry and offered a theoretical basis for Ca application in managing Cd pollution.

From stress to resilience: Unraveling the molecular mechanisms of cadmium toxicity, detoxification and tolerance in plants

Soil contamination with cadmium (Cd) has become a global issue due to increasing human activities. Cd contamination poses threats to plant growth as well as jeopardizing food safety and human health through the accumulation of Cd in edible parts of plants. Unraveling the Cd toxicity mechanisms and responses of plants to Cd stress is critical for promoting plant growth and ensuring food safety in Cd-contaminated soils. Toxicological research on plant responses to heavy metal stress has extensively studied Cd, as it can disrupt multiple physiological processes. In addition to morpho-anatomical, hormonal, and biochemical responses, plants rapidly initiate transcriptional modifications to combat Cd stress-induced oxidative and genotoxic damage. Various families of transcription factors play crucial roles in triggering such responses. Moreover, epigenetic modifications have been identified as essential players in maintaining plant genome stability under genotoxic stress. Plants have developed several detoxification strategies to mitigate Cd-induced toxicity, such as cell-wall binding, complexation, vacuolar sequestration, efflux, and translocation. This review provides a comprehensive update on understanding of molecular mechanisms involved in Cd uptake, transportation, and detoxification, with a particular emphasis on the signaling pathways that involve transcriptional and epigenetic responses in plants. This review highlights the innovative strategies for enhancing Cd tolerance and explores their potential application in various crops. Furthermore, this review offers strategies for increasing Cd tolerance and limiting Cd bioavailability in edible parts of plants, thereby improving the safety of food crops.

Arbuscular Mycorrhizal Fungi: Boosting Crop Resilience to Environmental Stresses

Amid escalating challenges from global climate change and increasing environmental degradation, agricultural systems worldwide face a multitude of abiotic stresses, including drought, salinity, elevated temperatures, heavy metal pollution, and flooding. These factors critically impair crop productivity and yield. Simultaneously, biotic pressures such as pathogen invasions intensify the vulnerability of agricultural outputs. At the heart of mitigating these challenges, Arbuscular Mycorrhizal Fungi (AM fungi) form a crucial symbiotic relationship with most terrestrial plants, significantly enhancing their stress resilience. AM fungi improve nutrient uptake, particularly that of nitrogen and phosphorus, through their extensive mycelial networks. Additionally, they enhance soil structure, increase water use efficiency, and strengthen antioxidant defense mechanisms, particularly in environments stressed by drought, salinity, extreme temperatures, heavy metal contamination, and flooding. Beyond mitigating abiotic stress, AM fungi bolster plant defenses against pathogens and pests by competing for colonization sites and enhancing plant immune responses. They also facilitate plant adaptation to extreme environmental conditions by altering root morphology, modulating gene expression, and promoting the accumulation of osmotic adjustment compounds. This review discusses the role of AM fungi in enhancing plant growth and performance under environmental stress.

The Role of Metal Tolerance Proteins (MTPs) Associated with the Homeostasis of Divalent Mineral Elements in Ga-Treated Rice Plants

Mineral elements typically act as transported substrates for metal tolerance proteins (MTPs). The chelation of MTPs with heavy metal ions is a suggestive detoxification pathway in plants; therefore, the trade-off between transporting mineral elements and chelating excess toxic metal ions is inevitable. Gallium (Ga) is an emerging pollutant associated with high-tech industries. This study investigated the impact of Ga stress on MTPs, subsequently altering the transport and distribution of mineral elements. Gallium exposure reduced rice seedling biomass, with roots accumulating more Ga than shoots. Ga stress also changed the rice plants' subcellular mineral element distribution. PCR assays showed that Ga stress negatively affected all genes belonging to the Mn group, except OsMTP9. While Mn accumulation in the rice cellular compartments did not respond positively to Ga stress, OsMTP8, OsMTP8.1, OsMTP11, and OsMTP11.1 were found to be intimately connected to Mn transport and repressed by increased Ga accumulation in roots. Mg and Cu accumulated in the cytosol and organelles of Ga-treated rice plants, while OsMTP9 expression increased, demonstrating its importance in transporting Mg and Cu. A positive link between Ga stress and Zn accumulation in the cytosol and organelles was found, and OsMTP7 and OsMTP12 expression was positive, suggesting that Ga stress did not impair their Zn transport. Notably, Ga exposure down-regulated Fe-transporting OsMTP1 and OsMTP6, wherein the subcellular concentrations of Fe showed negative responses to Ga accumulation. These findings provide valuable insights into elucidating the roles of OsMTPs in Ga tolerance and the transport of these mineral elements.

Ionic and nano calcium to reduce cadmium and arsenic toxicity in plants: Review of mechanisms and potentials

Contamination of agricultural soils with heavy metal(loid)s like arsenic (As) and cadmium (Cd) is an ever increasing concern for crop production, quality, and global food security. Numerous in-situ and ex-situ remediation approaches have been developed to reduce As and Cd contamination in soils. However, field-scale applications of conventional remediation techniques are limited due to the associated environmental risks, low efficacy, and large capital investments. Recently, calcium (Ca) and Ca-based nano-formulations have emerged as promising solutions with the large potential to mitigate As and Cd toxicity in soil for plants. This review provides comprehensive insights into the phytotoxic effects of As and Cd stress/toxicity and discusses the applications of Ca-based ionic and nano-agrochemicals to alleviate As and Cd toxicity in important crops such as rice, wheat, maize, and barley. Further, various molecular and physiological mechanisms induced by ionic and nano Ca to mitigate As and Cd stress/toxicity in plants are discussed. This review also critically analyzes the efficiency of these emerging Ca-based approaches, both ionic and nano-formulations, in mitigating As and Cd toxicity in comparison to conventional remediation techniques. Additionally, future perspectives and ecological concerns of the remediation approaches encompassing ionic and nano Ca have been discussed. Overall, the review provides an updated and in-depth knowledge for developing sustainable and effective strategies to address the challenges posed by As and Cd contamination in agricultural crops.

Overexpression of PsMYB62 from Potentilla sericea confers cadmium tolerance in tobacco

Excessive cadmium (Cd) content in soil poses serious hazard to the survival and development of various organisms. Potentilla sericea, characterized by strong resistance and high utility value, is an excellent choice for urban ecological greening. Plant MYB transcription factors can participate in respondind to a variety of abiotic stresses such as heavy metals and salinity. In this study, PsMYB62 was transformed into tobacco by leaf disc infestation to obtain PsMYB62 overexpressing tobacco lines, and its mechanism in response to Cd stress was further investigated. The results showed that with Cd treatment, PsMYB62 overexpressing tobacco exhibited significantly higher net photosynthetic rate, stomatal conductance, transpiration rate, intercellular CO2 concentration, chlorophyll content, as well as enhanced activities of superoxide dismutase, peroxidase, catalase, and glutathione reductase enzymes, along with increased levels of reduced glutathione, proline, and soluble protein compared to the control. Conversely, levels of O2- and H2O2, and malondialdehyde were markedly lower than those in the control(P<0.05). Moreover, the aboveground Cd content was notably higher in the control than in the transgenic lines, whereas the control was much lower than the transgenic lines in the belowground fraction, with Cd subcellular distribution ratios ranking as follows: cell wall fraction > soluble fraction > organelle fraction (P<0.05). The expression of NtHMA3, NtYSL, NtPDR4 and NtPDR5B were much lower in transgenic lines compared to the control, while NtNAS3, NtSOD, and NtGSH2 exhibited significantly higher expression. Consequently, this study provides genetic resources for molecular breeding of Cd-tolerant plants through genetic engineering and lays a theoretical foundation for the remediation of heavy metal-contaminated soil.

Copper stress in rice: Perception, signaling, bioremediation and future prospects

Copper (Cu) is an indispensable micronutrient for plants, animals, and microorganisms and plays a vital role in different physiological processes. However, excessive Cu accumulation in agricultural soil, often through anthropogenic action, poses a potential risk to plant health and crop productivity. This review article provided a comprehensive overview of the available information regarding Cu dynamics in agricultural soils, major sources of Cu contamination, factors influencing its mobility and bioavailability, and mechanisms of Cu uptake and translocation in rice plants. This review examined the impact of Cu toxicity on the germination, growth, and photosynthesis of rice plants. It also highlighted molecular mechanisms underlying Cu stress signaling and the plant defense strategy, involving chelation, compartmentalization, and antioxidant responses. This review also identified significant areas that need further research, such as Cu uptake mechanism in rice, Cu signaling process, and the assessment of Cu-polluted paddy soil and rice toxicity under diverse environmental conditions. The development of rice varieties with reduced Cu accumulation through comprehensive breeding programs is also necessary. Regulatory measures, fungicide management, plant selection, soil and environmental investigation are recommended to prevent Cu buildup in agricultural lands to achieve sustainable agricultural goals.

DcMYB62, a transcription factor from carrot, enhanced cadmium tolerance of Arabidopsis by inducing the accumulation of carotenoids and hydrogen sulfide

Cadmium (Cd) is a significant heavy metal contaminant within the environment, carrying a notable level of toxicity that presents a substantial hazard to both plant and human. Carrot (Daucus carota), a significant root vegetable crop globally, have evolved multiple transcriptional regulatory mechanisms to cope with Cd stress, with a crucial involvement of the myeloblastosis (MYB) transcription factor. In this study, the DcMYB62 gene encoding 288 amino acids, localized in the nucleus and demonstrated transcription activation property, was isolated from carrot (cv. 'Kuroda'). There was a positive relationship observed between the levels of DcMYB62 expression and the accumulation patterns of carotenoids in two distinct carrot cultivars. Further investigation revealed that the expression of DcMYB62 improved Cd tolerance of Arabidopsis by increasing seed germination rate, root length, and overall survival rate. The levels of carotenoids in DcMYB62 transgenic Arabidopsis surpassed those in wild type, accompanied by elevated expression levels of 15-cis-phytoene desaturase, zeta-carotene desaturase, and carotenoid isomerase. Meanwhile, the heterologous expression of DcMYB62 promoted the biosynthesis of abscisic acid (ABA) and hydrogen sulfide (H2S), which in turn suppressed the formation of hydrogen peroxide and superoxide anion, while also stimulating stomatal closure. Furthermore, the heterologous expression of DcMYB62 increased the transcription of genes associated with heavy metal resistance in Arabidopsis, notably nicotianamine synthase. Overall, this study contributes to understanding how DcMYB62 promote Cd stress resistance of plants by regulating the biosynthesis pathways of carotenoids, ABA, and H2S, which offers valuable insights into the regulatory mechanism connecting DcMYBs with Cd stress response of carrot.

Mitigating toxic metals contamination in foods: Bridging knowledge gaps for addressing food safety

Background

Reducing exposure to harmful substances in food is highly desired, especially for infants, young children, and pregnant women. A workshop focused on understanding and reducing toxic metal contamination in food was conducted involving leading scientists, educators, practitioners, and key stakeholders in conjunction with the USDA National Institute of Food and Agriculture.

Scope and approach

The goal of this review and the workshop was to advance the current knowledge of major toxic metals concerning food safety, viz. arsenic (As), lead (Pb), cadmium (Cd), mercury (Hg), and chromium (Cr), preventive measures, identify critical knowledge gaps, and the need for research, extension, and education. Being a part of the "Closer to Zero (C2Z)" initiative of the USDA, FDA, and other federal agencies, the workshop adopted a "One Health" approach to mitigate dietary exposure and environmental pollution of hazardous elements.

Key findings and conclusions

The experts discussed the accumulation of toxic metals in food crops and drinking water in relation to soil biogeochemistry, plant uptake, and multidisciplinary factors such as food processing, detection, regulatory standards, etc. To forward food safety, this workshop critically examined toxic metals contamination, exposure and toxicity along the farm-to-fork-to-human continuum, research gaps, prevailing regulations, and sustainable remediation approaches, and offered significant recommendations. This review paper provides perspective on key findings of the workshop relative to addressing this important aspect of food safety, emphasizing interdisciplinary research that can effectively investigate and understand the complex and dynamic relationships between soil biogeochemistry, the microbiome, plant tolerance and accumulation strategies, uniform standards for acceptable and safe toxic element levels in food and water, and raising public awareness. This article also provides a foundation for decision-making regarding toxic metal fate and effects, including risk management strategies, in the face of modern industrialization and a changing climate.

Community dynamics in rhizosphere bacteria affected the adaptive growth of wheat in cadmium-contaminated soils

Soil cadmium (Cd) contamination in agriculture has intensified due to industrial development and human activities, which seriously affected the safety production in wheat. There are increasing evidences that rhizosphere bacteria contributed to alleviating Cd stress in plants, but the mechanism of how rhizosphere bacteria affecting the adaptive growth of wheat exposed to Cd contamination has not been extensively explored. Therefore, the rhizosphere bacterial community dynamics and plant growth for wheat were investigated under different levels of soil Cd contamination in accordance with risk control standard for soil contamination of agricultural land. The results showed that there was no significant difference in transport coefficient of Cd in wheat plants grown in different levels of soil Cd contamination conditions. Soil Cd contamination led to a decrease in soil pH value and an increase in exchangeable Cd content in rhizosphere soil. Although rhizosphere bacterial richness and diversity had no significant difference between soil Cd contamination conditions, as its community composition changed significantly. Under Cd contamination of risk screening value, Actinobacteria, Chloroflexi, and Nitrospira showed higher abundance, but Bacteroidetes, Patescibacteria, Sphingomonas, ADurbBin063-1 and Bryobacter were more prevalent under Cd contamination of risk intervention value. The enrichment of Patescibacteria, Proteobacteria and Acidobacteria was beneficial for Cd fixation, while Nitrospira enhanced nutrient uptake and utilization. Furthermore, Cd contamination with risk screening value enhanced the relationship among rhizosphere bacterial communities, and Cd contamination with risk intervention value increased the cooperative relationship among rhizosphere bacterial species. Additionally, soil Cd content showed a significantly positive correlation with Patescibacteria and ADurbBin063-1, and a significantly negative correlation with pH. Altogether, the shift in the community structures of rhizosphere bacterial was crucial for farmland protection and food safety in Cd polluted soil.

Supplementary Information

The online version contains supplementary material available at 10.1007/s12298-024-01532-8.

Effects of combined application of Se and ammonium fertilizers on the growth and nutritional quality of maize in Hg-polluted soil under two irrigation conditions and its health risk assessment

The interactive effects of Se (Na2SeO3) and ammonium fertilizers ((NH4)2SO4 and NH4Cl) on the growth and quality of maize (Zea mays L.) in mercury (Hg)-contaminated soil were studied under different water conditions. This study determined how two nutrient sources (Se and NH4+-N) interacted to improve the yield, quality, and safety of maize to ensure food security and quality assurance under the stress of heavy metal Hg. The experiment was conducted under two irrigation conditions: W1 (complete irrigation condition, 60-70% of water-holding capacity) and W2 (restricted irrigation condition, 40-50% of water-holding capacity). The combined treatment of Se and ammonium fertilizers significantly improved the growth of maize and the quality of grain in Hg-polluted soil. When Na2SeO3 and (NH4)2SO4 were combined, the growth and quality of maize increased the highest among all treatments. The interaction between Na2SeO3 and ammonium fertilizers significantly affected the available Hg/methylmercury (MeHg) content in soil and the Hg/MeHg concentration in maize. NH4Cl significantly increased the content of available Hg/MeHg in soil and increased the accumulation of Hg/MeHg in maize tissues due to Cl-. However, the treatments containing Na2SeO3 or (NH4)2SO4 significantly reduced the content of available Hg/MeHg in soil, reduced the accumulation of Hg/MeHg in maize tissues, and significantly reduced the possible health risks to human beings. The treatments containing Na2SeO3 or (NH4)2SO4 promoted maize growth by increasing the Se content in maize tissues and reducing the Hg/MeHg content, relieving the stress induced by Hg, and increasing the nutrient content. The combined treatment of Na2SeO3 and (NH4)2SO4 had the best effect in this experiment. This study also showed that this strategy is helpful in reducing the opportunities for consumers to accumulate Hg/MeHg by eating maize and its derivatives, thus ensuring food safety. Se and ammonium fertilizer can be used together to increase maize yield and develop agricultural production in Hg-polluted areas, which may have a significant impact on global food production. In addition, this simple method can help farmers manage soil affected by heavy metal pollution.

SSA4 Mediates Cd Tolerance via Activation of the Cis Element of VHS1 in Yeast and Enhances Cd Tolerance in Chinese Cabbage

Identifying key genes involved in Cadmium (Cd) response pathways in plants and developing low-Cd-accumulating cultivars may be the most effective and eco-friendly strategy to tackle the problem of Cd pollution in crops. In our previous study, Stressseventy subfamily A 4 (SSA4) was identified to be associated with Cd tolerance in yeast. Here, we investigated the mechanism of SSA4 in regulating Cd tolerance in yeast. ScSSA4 binds to POre Membrane 34 (POM34), a key component of nuclear pore complex (NPC), and translocates from the cytoplasm to the nucleus, where it regulates the expression of its downstream gene, Viable in a Hal3 Sit4 background 1 (VHS1), resulting in reduced Cd accumulation in yeast cells. Additionally, we identified a Chinese cabbage SSA4 gene, BrSSA4c, which could enhance the Cd tolerance in Chinese cabbage. This study offers new insights into the regulatory mechanisms of Cd tolerance in yeast, a model organism, and paves the way for the genetic enhancement of Cd tolerance in Chinese cabbage.

Long-term adaptation of water hyacinth to low cadmium involves antioxidant enzyme and metallothionein transcriptional regulation

Cadmium (Cd) is one of the main heavy metal pollutants in environment. Water hyacinth (Eichhornia crassipes) is an effective phytoremediation plant for mitigating Cd stress, though the concentration threshold for its long-term survival remains unclear. Our results indicate that 4 mg L-1 Cd may be the maximum threshold for long-term cultivation of water hyacinth, as it significantly inhibits root growth and photosynthesis. The activity of superoxide dismutase increased under low concentration Cd treatment (0.5 and 1.0 mg L-1), potentially contributing to the reactive oxygen species (ROS) homeostasis in water hyacinth. Additionally, we identified the Cd-induced metallothionein gene MT1, whose heterologous expression in yeast enhanced Cd tolerance despite higher Cd accumulation. The upregulation of MT1 may enhance the detoxification capacity of water hyacinth under Cd stress. Our findings establish the Cd range for long-term cultivation of water hyacinth and elucidated the mechanism of its tolerance to moderate Cd stress.

OsLdh7, a rice lactate dehydrogenase, confers stress resilience in rice under cadmium stress through NAD+/NADH regulation

Lactate dehydrogenase (Ldh, EC 1.1.1.27), an oxidoreductase enzyme catalyses the interconversion of pyruvate to L-lactate and vice-versa with concomitant oxidation and reduction of NADH and NAD+. The enzyme functions as a ROS sensor and mitigates stress response by maintaining NAD+/NADH homeostasis. In this study, we delineated the role of the Ldh enzyme in imparting cadmium stress tolerance in rice. Previously, we identified a putatively active Ldh in rice (OsLdh7) through insilico modelling. Biochemical characterization of the OsLdh7 enzyme revealed it to be optimally active at pH 6.6 in the forward direction and pH 9 in the reverse direction. Overexpression of OsLdh7 in rice cv. IR64, increased tolerance of the transgenic lines to cadmium stress compared to the wild type (WT) at both seedling and reproductive stages. The transgenic lines showed increased enzyme activity in the reverse direction under cadmium stress, attributed to elevated cytosolic pH resulting from increased calcium concentration. This increased NADH content is highly essential for functioning of the ROS scavenging enzymes, RbohD and MPK6. qPCR analysis revealed that the overexpression lines had increased transcript abundance of these genes indicating an effective ROS scavenging mechanism. Additionally, the overexpression lines showed an efficient cadmium sequestration mechanism compared to the WT by increasing the transcript levels of the vacuolar transporters of cadmium as well as total phytochelatin content. Thus, our findings indicated OsLdh7 imparts cadmium stress tolerance in rice through a two-pronged approach by mitigating ROS and sequestering cadmium ions, highlighting its potential for crop improvement programs.

Multiomics and biotechnologies for understanding and influencing cadmium accumulation and stress response in plants

Cadmium (Cd) is one of the most toxic heavy metals faced by plants and, additionally, via the food chain, threatens human health. It is principally dispersed through agro-ecosystems via anthropogenic activities and geogenic sources. Given its high mobility and persistence, Cd, although not required, can be readily assimilated by plants thereby posing a threat to plant growth and productivity as well as animal and human health. Thus, breeding crop plants in which the edible parts contain low to zero Cd as safe food stuffs and harvesting shoots of high Cd-containing plants as a route for decontaminating soils are vital strategies to cope with this problem. Recently, multiomics approaches have been employed to considerably enhance our understanding of the mechanisms underlying (i) Cd toxicity, (ii) Cd accumulation, (iii) Cd detoxification and (iv) Cd acquisition tolerance in plants. This information can be deployed in the development of the biotechnological tools for developing plants with modulated Cd tolerance and detoxification to safeguard cellular and genetic integrity as well as to minimize food chain contamination. The aim of this review is to provide a current update about the mechanisms involved in Cd uptake by plants and the recent developments in the area of multiomics approach in terms of Cd stress responses, as well as in the development of Cd tolerant and low Cd accumulating crops.

Mechanisms of Cadmium stress response in watermelon: Insights from physiological, transcriptomic, and metabolic analyses

Cadmium (Cd) contamination of soil may lead to Cd stress for plants, which significantly hinders plant growth and development, posing a risk to human health through the consumption of Cd-contaminated foods. Watermelon (Citrullus lanatus), a widely consumed fruit, is particularly affected by Cd stress globally, yet the mechanisms underlying its response are not well understood. Here, we subjected watermelon seedlings to simulated Cd stress treatment and explored the physiological, transcriptomic, and metabolic response. Our findings revealed that Cd stress treatment led to increased accumulation of reactive oxygen species (ROS) in watermelon leaves. Transcriptome sequencing unveiled a multitude of osmotic and oxidative stress-responsive genes, including peroxidase (POD), MYB, voltage-dependent anion channel (SLAC1), and ABC transporter. KEGG enrichment analysis highlighted the predominant enrichment of Cd stress-responsive genes in pathways such as glutathione (GSH) metabolism, MAPK signaling, and biosynthesis of secondary metabolites. Within the GSH metabolism pathway, several glutathione S-transferase (GST) genes were up-regulated, alongside phytochelatin synthetase (PCS) genes involved in phytochelatin synthesis. In the MAPK signaling pathway, genes associated with ABA and ethylene signal transduction showed up-regulation following Cd stress. Metabolomic analysis demonstrated that Cd stress enhanced the production of amino acids, phenolamines, and esters. Overall, our study elucidates that watermelon responds to Cd stress by activating its antioxidant system, GSH metabolism pathway, MAPK signal pathway, and biosynthesis of key metabolites. These findings offer valuable insights for the remediation of heavy metal pollution in soil affecting plant life.

Converting flooded rice to dry farming can alleviate MeHg accumulation in grains

The study explored the impact of water management on rice cultivation in mercury-contaminated paddy soil. The objective was to analyze the characteristics of mercury translocation by converting flooded soils to dry farming (non-flooded) to alleviate mercury accumulation in rice grains. The experiment was conducted over three consecutive rice-growing seasons, employing two distinct water management models: a continuously flooded rice cultivation mode and a flooded rice planting mode in the first season, followed by a non-flooded rice farming mode in the second and third seasons. The results showed that the change from flooded to non-flooded rice cultivation patterns presented extremely excellent environmental potential for inhibiting the uptake of both methylmercury and total mercury in rice. When transitioning from flooded cultivation to dry farming, the concentration of methylmercury and total mercury in the grains of non-flooded rice decreased by 87.15 % and 9.57 %, respectively, compared to that in the grains of flooded rice. In the third season, the methylmercury and total mercury in the grains of non-flooded rice decreased further by 95.03 % and 69.45 %, respectively. This study verified that the conversion of rice cultivation from flooded to non-flooded is an efficient strategy for suppressing the accumulation of methylmercury in rice grains, and it might offer a promising solution for managing soil mercury risks and ensuring the safety of rice for human consumption.

CDR1, a DUF946 domain containing protein, positively regulates cadmium tolerance in Arabidopsis thaliana by maintaining the stability of OPT3 protein

Industrial and agricultural production processes lead to the accumulation of cadmium (Cd) in soil, resulting in crops absorb Cd from contaminated soil and then transfer it to human body through the food chain, posing a serious threat to human health. Thus, it is necessary to explore novel genes and mechanisms involved in regulating Cd tolerance and detoxification in plants. Here, we found that CDR1, a DUF946 domain containing protein, localizes to the plasma membrane and positively regulates Cd stress tolerance. The cdr1 mutants exhibited Cd sensitivity, accumulated excessive Cd in the seeds and roots, but decreased in leaves. However, CDR1-OE transgenic plants not only showed Cd tolerance but also significantly reduced Cd in seeds and roots. Additionally, both in vitro and in vivo assays demonstrated an interaction between CDR1 and OPT3. Cell free protein degradation and OPT3 protein level determination assays indicated that CDR1 could maintain the stability of OPT3 protein. Moreover, genetic phenotype analysis and Cd content determination showed that CDR1 regulates Cd stress tolerance and affect the distribution of Cd in plants by maintaining the stability of OPT3 protein. Our discoveries provide a key candidate gene for directional breeding to reduce Cd accumulation in edible seeds of crops.

Evaluation of arsenic phytoremediation potential in Azolla filiculoides Lam. plants under low pH stress conditions

The Azolla filiculoides plants were challenged with different arsenic (As) concentration under low pH stress conditions. The growth rate and doubling time of the plants were severely affected by higher As treatments at pH 5.00 when compared with stress pH 4.75 treatments. Hence, pH 5.00 was considered for further studies. In 10-30 μM As treated cultures, after 6 days, the relative growth rate (RGR) of Azolla plants was significantly reduced and in higher concentration of As, the RGR was negatively regulated. The root trait parameters were also significantly affected by increasing concentrations of As. Further, photosynthetic performance indicators also show significant decline with increasing As stress. Overall, the plants treated with 40 and 50 μM of As displayed stress phenotypes like negative RGR, reduced doubling time and root growth, browning of leaves and root withering. The total proline, H2O2, POD and Catalase activities were significantly affected by As treatments. Meantime, 30 μM of As treated cultures displayed 15 μg/g/Fw As accumulation and moderate growth rate. Thus, the Azolla plants are suitable for the phytoremediation of As (up to 30 μM concentration) in the aquatic environment under low pH conditions (5.00). Furthermore, the transcriptome studies on revealed that the importance of positively regulated transporters like ACR3, AceTr family, ABC transporter super family in As (10 μM) stress tolerance, uptake and accumulation. The transporters like CPA1, sugar transporters, PiT were highly down-regulated. Further, expression analysis showed that the MATE1, CIP31, HAC1 and ACR3 were highly altered during the As stress conditions.

Epigenetic alterations in bioaccumulators of cadmium: Lessons from mammalian kidneys and plants

Faced with unpredictable changes in global weather patterns, release and redistribution of metals through land erosion and water movements add to the increasing use of metals in industrial activities causing high levels of environmental pollution and concern to the health of all living organisms. Cadmium is released into the environment by smelting and mining, entering the food chain via contaminated soils, water, and phosphate fertilizers. Bioaccumulation of cadmium in plants represents the first major step into the human food chain and contributes to toxicity of several organs, especially the kidneys, where biomagnification of cadmium occurs over decades of exposure. Even in small amounts, cadmium brings about alterations at the molecular and cellular levels in eukaryotes through mutagenicity, molecular mimicry at metal binding sites and oxidative stress. The epigenome dictates expression of a gene's output through a number of regulatory steps involving chromatin remodeling, nucleosome unwinding, DNA accessibility, or nucleic acid modifications that ultimately impact the transcriptional and translational machinery. Several epigenetic enzymes exhibit zinc-dependence as zinc metalloenzymes and zinc finger proteins thus making them susceptible to deregulation through displacement by cadmium. In this review, we summarize the literature on cadmium-induced epigenetic mechanisms in mammalian kidneys and plants, compare similarities in the epigenetic defense between these bioaccumulators, and explore how future studies could advance our understanding of the cadmium-induced stress response and disruption to biological health.

Cadmium uptake and detoxification in tomato plants: Revealing promising targets for genetic improvement

Cadmium (Cd) is a hazardous heavy metal known for its detrimental effects on plants, human health, and the environment. This review article delves into the dynamics of Cd uptake, long-distance transport, and its impact on plant performance, with a specific focus on tomato plants. The process of Cd uptake by roots and its subsequent long-distance transport in the xylem and phloem are explored to understand how Cd influences plants operation. The toxic effects of Cd on tomato plants are discussed, highlighting on the challenges it poses to plant growth and development. Furthermore, the review investigates various Cd tolerance mechanisms in plants, including avoidance or exclusion by the root cell wall, root-to-shoot translocation, detoxification pathways, and antioxidative defence systems against Cd-induced stress. In addition, the transcriptomic analyses of tomato plants under Cd stress provide insights into the molecular responses and adaptations of plants to Cd toxicity. Overall, this comprehensive review enhances our understanding of Cd-plant interactions and reveal promising genes for tomato genetic improvement to increase its tolerance to cadmium.

Plants' molecular behavior to heavy metals: from criticality to toxicity

The contamination of soil and water with high levels of heavy metals (HMs) has emerged as a significant obstacle to agricultural productivity and overall crop quality. Certain HMs, although serving as essential micronutrients, are required in smaller quantities for plant growth. However, when present in higher concentrations, they become very toxic. Several studies have shown that to balance out the harmful effects of HMs, complex systems are needed at the molecular, physiological, biochemical, cellular, tissue, and whole plant levels. This could lead to more crops being grown. Our review focused on HMs' resources, occurrences, and agricultural implications. This review will also look at how plants react to HMs and how they affect seed performance as well as the benefits that HMs provide for plants. Furthermore, the review examines HMs' transport genes in plants and their molecular, biochemical, and metabolic responses to HMs. We have also examined the obstacles and potential for HMs in plants and their management strategies.

Metal transport proteins and transcription factor networks in plant responses to cadmium stress

Cadmium (Cd) contamination poses a significant threat to agriculture and human health due to its high soil mobility and toxicity. This review synthesizes current knowledge on Cd uptake, transport, detoxification, and transcriptional regulation in plants, emphasizing the roles of metal transport proteins and transcription factors (TFs). We explore transporter families like NRAMP, HMA, ZIP, ABC, and YSL in facilitating Cd movement within plant tissues, identifying potential targets for reducing Cd accumulation in crops. Additionally, regulatory TF families, including WRKY, MYB, bHLH, and ERF, are highlighted for their roles in modulating gene expression to counteract Cd toxicity. This review consolidates the existing literature on plant-Cd interactions, providing insights into established mechanisms and identifying gaps for future research. Understanding these mechanisms is crucial for developing strategies to enhance plant tolerance, ensure food safety, and promote sustainable agriculture amidst increasing heavy-metal pollution.

The Accumulation of Abscisic Acid Increases the Innate Pool of Soluble Phenolics through Polyamine Metabolism in Rice Seedlings under Hexavalent Chromium Stress

Potential toxic element (PTE) pollution has emerged as a significant environmental and social concern in global agriculture. Chromium (Cr) occurs in different oxidation states naturally, among them Cr(VI), which is highly toxic. This study carried out biochemical and molecular tests to elucidate the accumulation of total soluble phenolics (TSPs) in rice plants exposed to Cr(VI) at 2.0, 8.0, and 16.0 mg Cr/L, emphasizing the interaction between polyamines (PAs) and abscisic acid (ABA). The results revealed significant Cr accumulation in different tissues of rice plants, which hindered their growth. Cr(VI) exposure increased the ABA concentration, with higher levels detected in the shoots than in the roots. The TSP concentration in rice tissues showed a positive relationship with the supplied concentrations of Cr(VI). The measured PAs, including spermine (Spm), putrescine (Put), and spermidine (Spd), exhibited varied responses to Cr(VI) stress, with only Spm concentration increasing with Cr(VI) concentrations. Real-time qRT-PCR showed PAs and ABA synthesis-associated genes such as OsADC1, OsAIH, OsCPA1, and OsCPA4 were significantly up-regulated in shoot of rice plants treated with Cr(VI). These genes are associated with the second pathway of Put synthesis, originating from Arg. Almost all genes activated in the Met pathway were significantly up-regulated as well. Moreover, the genes involved in the interconversion among the three species of PAs exhibited completely different responses to Cr(VI) exposure. Overall, the biochemical analysis and gene expression data indicate that the interaction between ABA and Spm is likely to enhance the TSP levels in rice plants subjected to Cr(VI) toxicity.

Exogenous Application of Amino Acids Alleviates Toxicity in Two Chinese Cabbage Cultivars by Modulating Cadmium Distribution and Reducing Its Translocation

Plants communicate underground by secreting multiple amino acids (AAs) through their roots, triggering defense mechanisms against cadmium (Cd) stress. However, the specific roles of the individual AAs in Cd translocation and detoxification remain unclear. This study investigated how exogenous AAs influence Cd movement from the roots to the shoots in Cd-resistant and Cd-sensitive Chinese cabbage cultivars (Jingcui 60 and 16-7 cultivars). The results showed that methionine (Met) and cysteine (Cys) reduced Cd concentrations in the shoots of Jingcui 60 by approximately 44% and 52%, and in 16-7 by approximately 43% and 32%, respectively, compared to plants treated with Cd alone. However, threonine (Thr) and aspartic acid (Asp) did not show similar effects. Subcellular Cd distribution analysis revealed that AA supplementation increased Cd uptake in the roots, with Jingcui 60 preferentially storing more Cd in the cell wall, whereas the 16-7 cultivar exhibited higher Cd concentrations in the organelles. Moreover, Met and Cys promoted the formation of Cd-phosphate in the roots of Jingcui 60 and Cd-oxalate in the 16-7 cultivar, respectively. Further analysis showed that exogenous Cys inhibited Cd transport to the xylem by downregulating the expression of HMA2 in the roots of both cultivars, and HMA4 in the 16-7 cultivar. These findings provide insights into the influence of exogenous AAs on Cd partitioning and detoxification in Chinese cabbage plants.

Haplotypes of ATP-Binding Cassette CaABCC6 in Chickpea from Kazakhstan Are Associated with Salinity Tolerance and Leaf Necrosis via Oxidative Stress

Salinity tolerance was studied in chickpea accessions from a germplasm collection and in cultivars from Kazakhstan. After NaCl treatment, significant differences were found between genotypes, which could be arranged into three groups. Those that performed poorest were found in group 1, comprising five ICC accessions with the lowest chlorophyll content, the highest leaf necrosis (LN), Na+ accumulation, malondialdehyde (MDA) content, and a low glutathione ratio GSH/GSSG. Two cultivars, Privo-1 and Tassay, representing group 2, were moderate in these traits, while the best performance was for group 3, containing two other cultivars, Krasnokutsky-123 and Looch, which were found to have mostly green plants and an exact opposite pattern of traits. Marker-trait association (MTA) between 6K DArT markers and four traits (LN, Na+, MDA, and GSH/GSSG) revealed the presence of four possible candidate genes in the chickpea genome that may be associated with the three groups. One gene, ATP-binding cassette, CaABCC6, was selected, and three haplotypes, A, D1, and D2, were identified in plants from the three groups. Two of the most salt-tolerant cultivars from group 3 were found to have haplotype D2 with a novel identified SNP. RT-qPCR analysis confirmed that this gene was strongly expressed after NaCl treatment in the parental- and breeding-line plants of haplotype D2. Mass spectrometry of seed proteins showed a higher accumulation of glutathione reductase and S-transferase, but not peroxidase, in the D2 haplotype. In conclusion, the CaABCC6 gene was hypothesized to be associated with a better response to oxidative stress via glutathione metabolism, while other candidate genes are likely involved in the control of chlorophyll content and Na+ accumulation.

The role and transcriptomic mechanism of cell wall in the mutual antagonized effects between selenium nanoparticles and cadmium in wheat

Selenium nanoparticles (SeNPs) has been reported as a beneficial role in alleviating cadmium (Cd) toxicity in plant. However, underlying molecular mechanisms about SeNPs reducing Cd accumulation and alleviating Cd toxicity in wheat are not well understood. A hydroponic culture was performed to evaluate Cd and Se accumulation, cell wall components, oxidative stress and antioxidative system, and transcriptomic response of wheat seedlings after SeNPs addition under Cd stress. Results showed that SeNPs application notably reduced Cd concentration in root and in shoot by 56.9% and 37.3%, respectively. Additionally, SeNPs prompted Cd distribution in root cell wall by 54.7%, and increased lignin, pectin and hemicellulose contents by regulating cell wall biosynthesis and metabolism-related genes. Further, SeNPs alleviated oxidative stress caused by Cd in wheat through signal transduction pathways. We also observed that Cd addition reduced Se accumulation by downregulating the expression level of aquaporin 7. These results indicated that SeNPs alleviated Cd toxicity and reduced Cd accumulation in wheat, which were associated with the synergetic regulation of cell wall biosynthesis pathway, uptake transporters, and antioxidative system via signaling pathways.

Comprehensive physiology and proteomics analysis revealed the resistance mechanism of rice (Oryza sativa L) to cadmium stress

Cadmium contamination can lead to a decrease in crop yield and quality. However, Cd-tolerant rice can improve rice resistance genes, improve crop tolerance to heavy metals, and protect plants from oxidative damage. In this study, Japonica rice: Chunyou 987 and Indica rice: Chuanzhong you 3607 were used to reveal the molecular response mechanism of Cd-tolerant rice under cadmium concentration of 3 mg/kg through comparative experiments combined with physiology and proteomics. The results showed that compared with indica rice, japonica rice showed more robust resistance to Cd stress and effectively retained many Cd ions in roots. Moreover, it enhanced its enzymatic and non-enzymatic anti-oxidative stress mechanism, which increased the activities of catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD) by 47.37%, 21.75%, and 55.42%, respectively. The contents of non-enzymatic antioxidant substances ascorbic acid (AsA), glutathione (GSH), cysteine (Cys), proline (PRO), anthocyanins (OPC), and flavonoids were increased by 25.32%, 42.67%, 21.43%, 50.81%, 33.23%, and 72.16%, respectively. Through proteomics analysis, it was found that in response to the damage caused by cadmium stress, Japonica rice makes Photosynthesis functional proteins (psbO and PetH), Photosynthesis antenna proteins (LHCA and ASCAB9), Carbon fixation functional proteins (PEPC and OsAld), Porphyrin metabolism functional proteins (OsRCCR1 and SE5), Glyoxylate and dicarboxylate The expression of metabolism functional proteins (CATC and GLO4.) and Glutathione metabolism functional proteins (APX8 and OsGSTU13) were significantly up-regulated, which stimulated the antioxidant stress mechanism and photosynthetic system, and constructed a robust energy supply system to ensure the normal metabolic activities of life. Strengthening the mechanisms of plant homeostasis. In summary, this study revealed the molecular mechanism of tolerance to Cd stress in japonica rice, and the results of this study will provide a possible way to improve Cd-resistant rice seedlings.

R-Napropamide Potentially Regulates Cadmium Accumulation in Arabidopsis Shoots through Transport Channel Modulation

Heavy metal contamination in soils poses a significant environmental threat to human health. This study examines the effects of the chiral herbicide napropamide (NAP) on Arabidopsis thaliana, focusing on growth metrics and cadmium (Cd) accumulation. R-NAP does not adversely affect plant growth compared to the control, whereas S-NAP significantly reduces root length and fresh weight. Notably, R-NAP markedly increases Cd accumulation in the shoots, exceeding levels observed in the control and S-NAP. This increase coincides with reduced photosynthetic efficiency. Noninvasive electrode techniques reveal a higher net Cd absorption flux in the root mature zone under R-NAP than S-NAP, although similar to the control. Transcriptomic analysis highlights significant stereoisomer differences in Cd transporters, predominantly under R-NAP treatment. SEM and molecular docking simulations support that R-NAP primarily upregulates transporters such as HMA4. The results suggest careful management of herbicides like R-NAP in contaminated fields to avoid excessive heavy metal buildup in crops.

CIP1, a CIPK23-interacting transporter, is implicated in Cd tolerance and phytoremediation

Environmental pollution from cadmium (Cd) presents a serious threat to plant growth and development. Therefore, it's crucial to find out how plants resist this toxic metal to develop strategies for remediating Cd-contaminated soils. In this study, we identified CIP1, a transporter protein, by screening interactors of the protein kinase CIPK23. CIP1 is located in vesicles membranes and can transport Cd2+ when expressed in yeast cells. Cd stress specifically induced the accumulation of CIP1 transcripts and functional proteins, particularly in the epidermal cells of the root tip. CIKP23 could interact directly with the central loop region of CIP1, phosphorylating it, which is essential for the efficient transport of Cd2+. A loss-of-function mutation of CIP1 in wild-type plants led to increased sensitivity to Cd stress. Conversely, tobacco plants overexpressing CIP1 exhibited improved Cd tolerance and increased Cd accumulation capacity. Interestingly, this Cd accumulation was restricted to roots but not shoots, suggesting that manipulating CIP1 does not risk Cd contamination of plants' edible parts. Overall, this study characterizes a novel Cd transporter, CIP1, with potential to enhance plant tolerance to Cd toxicity while effectively eliminating environmental contamination without economic losses.

Red light mitigates Cd toxicity in Egeria densa by restricting Cd accumulation and modulating antioxidant defense system

Controlling light qualities have been acknowledged as an effective method to enhance the efficiency of phytoremediation, as light has a significant impact on plant growth. This study examined the effects of light qualities on cadmium (Cd) tolerance in aquatic plant Egeria densa using a combination of biochemical and transcriptomic approaches. The study revealed that E. densa exhibits higher resistance to Cd toxicity under red light (R) compared to blue light (B), as evidenced by a significant decrease in photosynthetic inhibition and damage to organelle ultrastructure. After Cd exposure, there was a significantly reduced Cd accumulation and enhanced levels of both glutathione reductase (GR) activity and glutathione (GSH), along with an increase in jasmonic acid (JA) in R-grown E. densa compared to B. Transcriptional analysis revealed that R caused an up-regulation of Cd transporter genes such as ABCG (G-type ATP-binding cassette transporter), ABCC (C-type ATP-binding cassette transporter), and CAX2 (Cation/H+ exchanger 2), while down-regulated the expression of HIPP26 (Heavy metal-associated isoprenylated plant protein 26), resulting in reduced Cd uptake and enhanced Cd exportation and sequestration into vacuoles. Moreover, the expression of genes involved in phytochromes and JA synthesis was up-regulated in Cd treated E. densa under R. In summary, the results suggest that R could limit Cd accumulation and improve antioxidant defense to mitigate Cd toxicity in E. densa, which might be attributed to the enhanced JA and phytochromes. This study provides a foundation for using light control methods with aquatic macrophytes to remediate heavy metal contamination in aquatic systems.

Identification and functional characterization of ABC transporters for selenium accumulation and tolerance in soybean

ATP-binding cassette (ABC) transporters were crucial for various physiological processes like nutrition, development, and environmental interactions. Selenium (Se) is an essential micronutrient for humans, and its role in plants depends on applied dosage. ABC transporters are considered to participate in Se translocation in plants, but detailed studies in soybean are still lacking. We identified 196 ABC genes in soybean transcriptome under Se exposure using next-generation sequencing and single-molecule real-time sequencing technology. These proteins fell into eight subfamilies: 8 GmABCA, 51 GmABCB, 39 GmABCC, 5 GmABCD, 1 GmABCE, 10 GmABCF, 74 GmABCG, and 8 GmABCI, with amino acid length 121-3022 aa, molecular weight 13.50-341.04 kDa, and isoelectric point 4.06-9.82. We predicted a total of 15 motifs, some of which were specific to certain subfamilies (especially GmABCB, GmABCC, and GmABCG). We also found predicted alternative splicing in GmABCs: 60 events in selenium nanoparticles (SeNPs)-treated, 37 in sodium selenite (Na2SeO3)-treated samples. The GmABC genes showed differential expression in leaves and roots under different application of Se species and Se levels, most of which are belonged to GmABCB, GmABCC, and GmABCG subfamilies with functions in auxin transport, barrier formation, and detoxification. Protein-protein interaction and weighted gene co-expression network analysis suggested functional gene networks with hub ABC genes, contributing to our understanding of their biological functions. Our results illuminate the contributions of GmABC genes to Se accumulation and tolerance in soybean and provide insight for a better understanding of their roles in soybean as well as in other plants.

The Uptake, Transfer, and Detoxification of Cadmium in Plants and Its Exogenous Effects

Cadmium (Cd) exerts a toxic influence on numerous crucial growth and development processes in plants, notably affecting seed germination rate, transpiration rate, chlorophyll content, and biomass. While considerable advances in Cd uptake and detoxification of plants have been made, the mechanisms by which plants adapt to and tolerate Cd toxicity remain elusive. This review focuses on the relationship between Cd and plants and the prospects for phytoremediation of Cd pollution. We highlight the following issues: (1) the present state of Cd pollution and its associated hazards, encompassing the sources and distribution of Cd and the risks posed to human health; (2) the mechanisms underlying the uptake and transport of Cd, including the physiological processes associated with the uptake, translocation, and detoxification of Cd, as well as the pertinent gene families implicated in these processes; (3) the detrimental effects of Cd on plants and the mechanisms of detoxification, such as the activation of resistance genes, root chelation, vacuolar compartmentalization, the activation of antioxidant systems and the generation of non-enzymatic antioxidants; (4) the practical application of phytoremediation and the impact of incorporating exogenous substances on the Cd tolerance of plants.

MicroRNA-encoded regulatory peptides modulate cadmium tolerance and accumulation in rice

MicroRNAs (miRNAs) are small noncoding RNAs that play a vital role in plant responses to abiotic and biotic stresses. Recently, it has been discovered that some primary miRNAs (pri-miRNAs) encode regulatory short peptides called miPEPs. However, the presence of miPEPs in rice, and their functions in response to abiotic stresses, particularly stress induced by heavy metals, remain poorly understood. Here, we identified a functional small peptide (miPEP156e) encoded by pri-miR156e that regulates the expression of miR156 and its target SPL genes, thereby affecting miR156-mediated cadmium (Cd) tolerance in rice. Overexpression of miPEP156e led to decreased uptake and accumulation of Cd and reactive oxygen species (ROS) levels in plants under Cd stress, resulting in improved rice Cd tolerance, as observed in miR156-overexpressing lines. Conversely, miPEP156e mutants displayed sensitivity to Cd stress due to the elevated accumulation of Cd and ROS. Transcriptome analysis further revealed that miPEP156e improved rice Cd tolerance by modulating Cd transporter genes and ROS scavenging genes. Our study provides insights into the regulatory mechanism of miPEP156e in rice response to Cd stress and demonstrates the potential of miPEPs as an effective tool for improving crop abiotic stress tolerance.

Genetic engineering low-arsenic and low-cadmium rice grain

Rice is prone to take up the toxic elements arsenic (As) and cadmium (Cd) from paddy soil through the transporters for other essential elements. Disruption of these essential transporters usually adversely affects the normal growth of rice and the homeostasis of essential elements. Here we report on developing low-As and low-Cd rice grain through the co-overexpression of OsPCS1, OsABCC1, and OsHMA3 genes under the control of the rice OsActin1 promoter. Co-overexpression of OsPCS1 and OsABCC1 synergistically decreased As concentration in the grain. Overexpression of OsPCS1 also decreased Cd concentration in the grain by restricting the xylem-to-phloem Cd transport in node I, but paradoxically caused Cd hypersensitivity as the overproduced phytochelatins in OsPCS1-overexpressing plants suppressed OsHMA3-dependent Cd sequestration in vacuoles and promoted Cd transport from root to shoot. Co-overexpression of OsHAM3 and OsPCS1 overcame this suppression and complemented the Cd hypersensitivity. Compared with non-transgenic rice control, co-overexpression of OsABCC1, OsPCS1, and OsHMA3 in rice decreased As and Cd concentrations in grain by 92.1% and 98%, respectively, without causing any defect in plant growth and reproduction or of mineral nutrients in grain. Our research provides an effective approach and useful genetic materials for developing low-As and low-Cd rice grain.

A transcriptome-wide identification of ATP-binding cassette (ABC) transporters revealed participation of ABCB subfamily in abiotic stress management of Glycyrrhiza glabra L

Transcriptome-wide survey divulged a total of 181 ABC transporters in G. glabra which were phylogenetically classified into six subfamilies. Protein-Protein interactions revealed nine putative GgABCBs (-B6, -B14, -B15, -B25, -B26, -B31, -B40, -B42 &-B44) corresponding to five AtABCs orthologs (-B1, -B4, -B11, -B19, &-B21). Significant transcript accumulation of ABCB6 (31.8 folds), -B14 (147.5 folds), -B15 (17 folds), -B25 (19.7 folds), -B26 (18.31 folds), -B31 (61.89 folds), -B40 (1273 folds) and -B42 (51 folds) was observed under the influence of auxin. Auxin transport-specific inhibitor, N-1-naphthylphthalamic acid, showed its effectiveness only at higher (10 µM) concentration where it down regulated the expression of ABCBs, PINs (PIN FORMED) and TWD1 (TWISTED DWARF 1) genes in shoot tissues, while their expression was seen to enhance in the root tissues. Further, qRT-PCR analysis under various growth conditions (in-vitro, field and growth chamber), and subjected to abiotic stresses revealed differential expression implicating role of ABCBs in stress management. Seven of the nine genes were shown to be involved in the stress physiology of the plant. GgABCB6, 15, 25 and ABCB31 were induced in multiple stresses, while GgABCB26, 40 & 42 were exclusively triggered under drought stress. No study pertaining to the ABC transporters from G. glabra is available till date. The present investigation will give an insight to auxin transportation which has been found to be associated with plant growth architecture; the knowledge will help to understand the association between auxin transportation and plant responses under the influence of various conditions.