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Lowe WH, Addis BR, Cochrane MM. Outbreeding reduces survival during metamorphosis in a headwater stream salamander. Mol Ecol 2024; 33:e17375. [PMID: 38699973 DOI: 10.1111/mec.17375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 02/22/2024] [Accepted: 03/01/2024] [Indexed: 05/05/2024]
Abstract
Assessing direct fitness effects of individual genetic diversity is challenging due to the intensive and long-term data needed to quantify survival and reproduction in the wild. But resolving these effects is necessary to determine how inbreeding and outbreeding influence eco-evolutionary processes. We used 8 years of capture-recapture data and single nucleotide polymorphism genotypes for 1906 individuals to test for effects of individual heterozygosity on stage-specific survival probabilities in the salamander Gyrinophilus porphyriticus. The life cycle of G. porphyriticus includes an aquatic larval stage followed by metamorphosis into a semi-aquatic adult stage. In our study populations, the larval stage lasts 6-10 years, metamorphosis takes several months, and lifespan can reach 20 years. Previous studies showed that metamorphosis is a sensitive life stage, leading us to predict that fitness effects of individual heterozygosity would occur during metamorphosis. Consistent with this prediction, monthly probability of survival during metamorphosis declined with multi-locus heterozygosity (MLH), from 0.38 at the lowest MLH (0.10) to 0.06 at the highest MLH (0.38), a reduction of 84%. Body condition of larvae also declined significantly with increasing MLH. These relationships were consistent in the three study streams. With evidence of localised inbreeding within streams, these results suggest that outbreeding disrupts adaptations in pre-metamorphic and metamorphic individuals to environmental gradients along streams, adding to evidence that headwater streams are hotspots of microgeographic adaptation. Our results also underscore the importance of incorporating life history in analyses of the fitness effects of individual genetic diversity and suggest that metamorphosis and similar discrete life stage transitions may be critical periods of viability selection.
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Affiliation(s)
- Winsor H Lowe
- Division of Biological Sciences, University of Montana, Missoula, Montana, USA
| | - Brett R Addis
- Division of Biological Sciences, University of Montana, Missoula, Montana, USA
| | - Madaline M Cochrane
- Division of Biological Sciences, University of Montana, Missoula, Montana, USA
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2
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Valentine GP, Lu X, Childress ES, Dolloff CA, Hitt NP, Kulp MA, Letcher BH, Pregler KC, Rash JM, Hooten MB, Kanno Y. Spatial asynchrony and cross-scale climate interactions in populations of a coldwater stream fish. GLOBAL CHANGE BIOLOGY 2024; 30:e17029. [PMID: 37987546 DOI: 10.1111/gcb.17029] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 09/07/2023] [Accepted: 10/07/2023] [Indexed: 11/22/2023]
Abstract
Climate change affects populations over broad geographic ranges due to spatially autocorrelated abiotic conditions known as the Moran effect. However, populations do not always respond to broad-scale environmental changes synchronously across a landscape. We combined multiple datasets for a retrospective analysis of time-series count data (5-28 annual samples per segment) at 144 stream segments dispersed over nearly 1,000 linear kilometers of range to characterize the population structure and scale of spatial synchrony across the southern native range of a coldwater stream fish (brook trout, Salvelinus fontinalis), which is sensitive to stream temperature and flow variations. Spatial synchrony differed by life stage and geographic region: it was stronger in the juvenile life stage than in the adult life stage and in the northern sub-region than in the southern sub-region. Spatial synchrony of trout populations extended to 100-200 km but was much weaker than that of climate variables such as temperature, precipitation, and stream flow. Early life stage abundance changed over time due to annual variation in summer temperature and winter and spring stream flow conditions. Climate effects on abundance differed between sub-regions and among local populations within sub-regions, indicating multiple cross-scale interactions where climate interacted with local habitat to generate only a modest pattern of population synchrony over space. Overall, our analysis showed higher degrees of response heterogeneity of local populations to climate variation and consequently population asynchrony than previously shown based on analysis of individual, geographically restricted datasets. This response heterogeneity indicates that certain local segments characterized by population asynchrony and resistance to climate variation could represent unique populations of this iconic native coldwater fish that warrant targeted conservation. Advancing the conservation of this species can include actions that identify such priority populations and incorporate them into landscape-level conservation planning. Our approach is applicable to other widespread aquatic species sensitive to climate change.
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Affiliation(s)
- George P Valentine
- Department of Fish, Wildlife, and Conservation Biology and Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
| | - Xinyi Lu
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, Colorado, USA
| | | | - C Andrew Dolloff
- U.S. Forest Service Southern Research Station, Blacksburg, Virginia, USA
| | - Nathaniel P Hitt
- U.S. Geological Survey Eastern Ecological Science Center, Kearneysville, West Virginia, USA
| | - Matthew A Kulp
- Great Smoky Mountains National Park, Gatlinburg, Tennessee, USA
| | - Benjamin H Letcher
- U.S. Geological Survey Eastern Ecological Science Center, Kearneysville, West Virginia, USA
| | - Kasey C Pregler
- Department of Environmental Science, Policy, and Management, University of California Berkeley, Berkeley, California, USA
| | - Jacob M Rash
- North Carolina Wildlife Resources Commission, Marion, North Carolina, USA
| | - Mevin B Hooten
- Department of Statistics and Data Sciences, The University of Texas at Austin, Austin, Texas, USA
| | - Yoichiro Kanno
- Department of Fish, Wildlife, and Conservation Biology and Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
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3
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Brown RP, Sun H, Jin Y, Meloro C. Habitat-associated Genomic Variation in a Wall Lizard from an Oceanic Island. Genome Biol Evol 2023; 15:evad193. [PMID: 37862140 PMCID: PMC10637050 DOI: 10.1093/gbe/evad193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 08/30/2023] [Accepted: 10/02/2023] [Indexed: 10/22/2023] Open
Abstract
The lizard Teira dugesii exhibits morphological divergence between beach and inland habitats in the face of gene flow, within the volcanic island of Madeira, Portugal. Here, we analyzed genomic data obtained by genotyping-by-sequencing, which provided 16,378 single nucleotide polymorphisms (SNPs) from 94 individuals sampled from 15 sites across Madeira. Ancient within-island divergence in allopatry appears to have mediated divergence in similar species within other Atlantic islands, but this hypothesis was not supported for T. dugesii. Across all samples, a total of 168 SNPs were classified as statistical outliers using pcadapt and OutFLANK. Redundancy analysis (RDA) revealed that 17 of these outliers were associated with beach/inland habitats. The SNPs were located within 16 sequence tags and 15 of these were homologous with sequences in a 31 Mb region on chromosome 3 of a reference wall lizard genome (the remaining tag could not be associated with any chromosome). We further investigated outliers through contingency analyses of allele frequencies at each of four pairs of adjacent beach-inland sites. The majority of the outliers detected by the RDA were confirmed at two pairs of these matched sites. These analyses also suggested some parallel divergence at different localities. Six other outliers were associated with site elevation, four of which were located on chromosome 5 of the reference genome. Our study lends support to a previous hypothesis that divergent selection between gray shingle beaches and inland regions overcomes gene flow and leads to the observed morphological divergence between populations in these adjacent habitats.
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Affiliation(s)
- Richard P Brown
- College of Life Sciences, China Jiliang University, Hangzhou, P.R. China
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, United Kingdom
| | - Hui Sun
- College of Life Sciences, China Jiliang University, Hangzhou, P.R. China
| | - Yuanting Jin
- College of Life Sciences, China Jiliang University, Hangzhou, P.R. China
| | - Carlo Meloro
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, United Kingdom
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4
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Petak C, Frati L, Brennan RS, Pespeni MH. Whole-Genome Sequencing Reveals That Regulatory and Low Pleiotropy Variants Underlie Local Adaptation to Environmental Variability in Purple Sea Urchins. Am Nat 2023; 202:571-586. [PMID: 37792925 DOI: 10.1086/726013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
AbstractOrganisms experience environments that vary across both space and time. Such environmental heterogeneity shapes standing genetic variation and may influence species' capacity to adapt to rapid environmental change. However, we know little about the kind of genetic variation that is involved in local adaptation to environmental variability. To address this gap, we sequenced the whole genomes of 140 purple sea urchins (Strongylocentrotus purpuratus) from seven populations that vary in their degree of pH variability. Despite no evidence of global population structure, we found a suite of single-nucleotide polymorphisms (SNPs) tightly correlated with local pH variability (outlier SNPs), which were overrepresented in regions putatively involved in gene regulation (long noncoding RNA and enhancers), supporting the idea that variation in regulatory regions is important for local adaptation to variability. In addition, outliers in genes were found to be (i) enriched for biomineralization and ion homeostasis functions related to low pH response, (ii) less central to the protein-protein interaction network, and (iii) underrepresented among genes highly expressed during early development. Taken together, these results suggest that loci that underlie local adaptation to pH variability in purple sea urchins fall in regions with potentially low pleiotropic effects (based on analyses involving regulatory regions, network centrality, and expression time) involved in low pH response (based on functional enrichment).
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5
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Antoniou A, Manousaki T, Ramírez F, Cariani A, Cannas R, Kasapidis P, Magoulas A, Albo-Puigserver M, Lloret-Lloret E, Bellido JM, Pennino MG, Follesa MC, Esteban A, Saraux C, Sbrana M, Spedicato MT, Coll M, Tsigenopoulos CS. Sardines at a junction: Seascape genomics reveals ecological and oceanographic drivers of variation in the NW Mediterranean Sea. Mol Ecol 2023; 32:1608-1628. [PMID: 36596297 DOI: 10.1111/mec.16840] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 12/20/2022] [Accepted: 12/30/2022] [Indexed: 01/04/2023]
Abstract
By evaluating genetic variation across the entire genome, one can address existing questions in a novel way while raising new ones. The latter includes how different local environments influence adaptive and neutral genomic variation within and among populations, providing insights into local adaptation of natural populations and their responses to global change. Here, under a seascape genomic approach, ddRAD data of 4609 single nucleotide polymorphisms (SNPs) from 398 sardines (Sardina pilchardus) collected in 11 Mediterranean and one Atlantic site were generated. These were used along with oceanographic and ecological information to detect signals of adaptive divergence with gene flow across environmental gradients. The studied sardines constitute two clusters (FST = 0.07), a pattern attributed to outlier loci, highlighting putative local adaptation. The trend in the number of days with sea surface temperature above 19°C, a critical threshold for successful sardine spawning, was crucial at all levels of population structuring with implications on the species' key biological processes. Outliers link candidate SNPs to the region's environmental heterogeneity. Our findings provide evidence for a dynamic equilibrium in which population structure is maintained by physical and ecological factors under the opposing influences of migration and selection. This dynamic in a natural system warrants continuous monitoring under a seascape genomic approach that might benefit from a temporal and more detailed spatial dimension. Our results may contribute to complementary studies aimed at providing deeper insights into the mechanistic processes underlying population structuring. Those are key to understanding and predicting future changes and responses of this highly exploited species in the face of climate change.
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Affiliation(s)
- Aglaia Antoniou
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Tereza Manousaki
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Francisco Ramírez
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Alessia Cariani
- Dept. Biological, Geological & Environmental Sciences (BiGeA), Alma Mater Studiorum - Università di Bologna, Ravenna, Italy.,Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy
| | - Rita Cannas
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy.,Department of Life and Environmental Sciences, University of Cagliari, Cagliari, Italy
| | - Panagiotis Kasapidis
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Antonios Magoulas
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Marta Albo-Puigserver
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain.,Centro Oceanográfico de Baleares, Instituto Español de Oceanografía (COB-CNIEO/CSIC), Palma, Spain
| | - Elena Lloret-Lloret
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Jose Maria Bellido
- Centro Oceanográfico de Murcia, Instituto Español de Oceanografía, (COMU-CNIEO/CSIC), Murcia, Spain
| | - Maria Grazia Pennino
- Centro Oceanográfico de Vigo, Instituto Español de Oceanografía (COVI-CNIEO/CSIC), Vigo, Pontevedra, Spain
| | - Maria Cristina Follesa
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy.,Department of Life and Environmental Sciences, University of Cagliari, Cagliari, Italy
| | - Antonio Esteban
- Centro Oceanográfico de Murcia, Instituto Español de Oceanografía, (COMU-CNIEO/CSIC), Murcia, Spain
| | - Claire Saraux
- MARBEC, University of Montpellier, CNRS, IFREMER, IRD, Sète, France
| | - Mario Sbrana
- Consorzio per il Centro Interuniversitario di Biologia Marina ed Ecologia Applicata G, Livorno, Italy
| | | | - Marta Coll
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Costas S Tsigenopoulos
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
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6
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Lagarde R, Ponton D. Predation pressure in amphidromous gobies: how their morphology is selected by predator species. J Zool (1987) 2022. [DOI: 10.1111/jzo.13021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- R. Lagarde
- Environnements Méditerranéens, Centre de Formation et de Recherche sur les Université de Perpignan Via Domitia – CNRS Perpignan France
| | - D. Ponton
- ENTROPIE, IRD‐Université de La Réunion‐CNRS‐Université de la Nouvelle‐Calédonie‐IFREMER, c/o, Institut Halieutique et des Sciences Marines (IH.SM) Université de Toliara Toliara Madagascar
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7
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Llanos‐Garrido A, Pérez‐Tris J, Díaz JA. Low genome-wide divergence between two lizard populations with high adaptive phenotypic differentiation. Ecol Evol 2021; 11:18055-18065. [PMID: 35003657 PMCID: PMC8717303 DOI: 10.1002/ece3.8403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 10/14/2021] [Accepted: 11/12/2021] [Indexed: 11/17/2022] Open
Abstract
Usually, adaptive phenotypic differentiation is paralleled by genetic divergence between locally adapted populations. However, adaptation can also happen in a scenario of nonsignificant genetic divergence due to intense gene flow and/or recent differentiation. While this phenomenon is rarely published, findings on incipient ecologically driven divergence or isolation by adaptation are relatively common, which could confound our understanding about the frequency at which they actually occur in nature. Here, we explore genome-wide traces of divergence between two populations of the lacertid lizard Psammodromus algirus separated by a 600 m elevational gradient. These populations seem to be differentially adapted to their environments despite showing low levels of genetic differentiation (according to previously studies of mtDNA and microsatellite data). We performed a search for outliers (i.e., loci subject to selection) trying to identify specific loci with FST statistics significantly higher than those expected on the basis of overall, genome-wide estimates of genetic divergence. We find that local phenotypic adaptation (in terms of a wide diversity of characters) was not accompanied by genome-wide differentiation, even when we maximized the chances of unveiling such differentiation at particular loci with FST-based outlier detection tests. Instead, our analyses confirmed the lack of genome-wide differentiation on the basis of more than 70,000 SNPs, which is concordant with a scenario of local adaptation without isolation by environment. Our results add evidence to previous studies in which local adaptation does not lead to any kind of isolation (or early stages of ecological speciation), but maintains phenotypic divergence despite the lack of a differentiated genomic background.
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Affiliation(s)
- Alejandro Llanos‐Garrido
- Department of Organismic and Evolutionary BiologyHarvard UniversityCambridgeMassachusettsUSA
- Department of Biodiversity, Ecology and EvolutionUCMMadridSpain
| | | | - José A. Díaz
- Department of Biodiversity, Ecology and EvolutionUCMMadridSpain
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8
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Diamond KM, Lagarde R, Griner JG, Ponton D, Powder KE, Schoenfuss HL, Walker JA, Blob RW. Interactions among multiple selective pressures on the form–function relationship in insular stream fishes. Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blab098] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Relationships between body shape and escape performance are well established for many species. However, organisms can face multiple selection pressures that might impose competing demands. Many fishes use fast starts for escaping predator attacks, whereas some species of gobiid fishes have evolved the ability to climb waterfalls out of predator-dense habitats. The ancestral ‘powerburst’ climbing mechanism uses lateral body undulations to move up waterfalls, whereas a derived ‘inching’ mechanism uses rectilinear locomotion. We examined whether fast-start performance is impacted by selection imposed from the new functional demands of climbing. We predicted that non-climbing species would show morphology and fast-start performance that facilitate predator evasion, because these fish live consistently with predators and are not constrained by the demands of climbing. We also predicted that, by using lateral undulations, powerburst climbers would show escape performance superior to that of inchers. We compared fast starts and body shape across six goby species. As predicted, non-climbing fish exhibited distinct morphology and responded more frequently to an attack stimulus than climbing species. Contrary to our predictions, we found no differences in escape performance among climbing styles. These results indicate that selection for a competing pressure need not limit the ability of prey to escape predator attacks.
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Affiliation(s)
- Kelly M Diamond
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
- Center for Developmental Biology and Regenerative Medicine, Seattle Children’s Research Institute, Seattle, WA, USA
| | - Raphaël Lagarde
- Hydrô Réunion, Z.I. Les Sables, Etang Salé, La Réunion, France
- Université de Perpignan Via Domitia – CNRS, Centre de Formation et de Recherche sur les Environnements Méditerranéens, UMR, Perpignan, France
| | - J Gill Griner
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
| | - Dominique Ponton
- ENTROPIE, IRD-Université de La Réunion-CNRS-Université de la Nouvelle-Calédonie-IFREMER, c/o Institut Halieutique et des Sciences Marines (IH.SM), Université de Toliara, Rue Dr. Rabesandratana, BP, Toliara, Madagascar
| | - Kara E Powder
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
| | - Heiko L Schoenfuss
- Aquatic Toxicology Laboratory, Saint Cloud State University, Saint Cloud, MN, USA
| | - Jeffrey A Walker
- Department of Biological Sciences, University of Southern Maine, Portland, ME, USA
| | - Richard W Blob
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
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Rosenthal WC, McIntyre PB, Lisi PJ, Prather RB, Moody KN, Blum MJ, Hogan JD, Schoville SD. Invasion and rapid adaptation of guppies ( Poecilia reticulata) across the Hawaiian Archipelago. Evol Appl 2021; 14:1747-1761. [PMID: 34295361 PMCID: PMC8288002 DOI: 10.1111/eva.13236] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Revised: 02/12/2021] [Accepted: 03/12/2021] [Indexed: 01/19/2023] Open
Abstract
How much does natural selection, as opposed to genetic drift, admixture, and gene flow, contribute to the evolution of invasive species following introduction to a new environment? Here we assess how evolution can shape biological invasions by examining population genomic variation in non-native guppies (Poecilia reticulata) introduced to the Hawaiian Islands approximately a century ago. By examining 18 invasive populations from four Hawaiian islands and four populations from the native range in northern South America, we reconstructed the history of introductions and evaluated population structure as well as the extent of ongoing gene flow across watersheds and among islands. Patterns of differentiation indicate that guppies have developed significant population structure, with little natural or human-mediated gene flow having occurred among populations following introduction. Demographic modeling and admixture graph analyses together suggest that guppies were initially introduced to O'ahu and Maui and then translocated to Hawai'i and Kaua'i. We detected evidence for only one introduction event from the native range, implying that any adaptive evolution in introduced populations likely utilized the genetic variation present in the founding population. Environmental association tests accounting for population structure identified loci exhibiting signatures of adaptive variation related to predators and landscape characteristics but not nutrient regimes. When paired with high estimates of effective population sizes and detectable population structure, the presence of environment-associated loci supports the role of natural selection in shaping contemporary evolution of Hawaiian guppy populations. Our findings indicate that local adaptation may engender invasion success, particularly in species with life histories that facilitate rapid evolution. Finally, evidence of low gene flow between populations suggests that removal could be an effective approach to control invasive guppies across the Hawaiian archipelago.
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Affiliation(s)
- William C. Rosenthal
- Center for LimnologyUniversity of Wisconsin‐MadisonMadisonWIUSA
- Department of BotanyUniversity of WyomingLaramieWYUSA
| | - Peter B. McIntyre
- Center for LimnologyUniversity of Wisconsin‐MadisonMadisonWIUSA
- Department of Natural ResourcesCornell UniversityIthacaNYUSA
| | - Peter J. Lisi
- Center for LimnologyUniversity of Wisconsin‐MadisonMadisonWIUSA
| | - Robert B. Prather
- Department of Evolution, Ecology, and Organismal BiologyUniversity of California RiversideRiversideCAUSA
| | - Kristine N. Moody
- Department of Ecology and Evolutionary BiologyUniversity of Tennessee KnoxvilleKnoxvilleTNUSA
- The ByWater InstituteTulane UniversityNew OrleansLAUSA
- Oak Ridge National LaboratoryOak RidgeTNUSA
| | - Michael J. Blum
- Department of Ecology and Evolutionary BiologyUniversity of Tennessee KnoxvilleKnoxvilleTNUSA
- The ByWater InstituteTulane UniversityNew OrleansLAUSA
| | - James Derek Hogan
- Department of Life SciencesTexas A&M University‐Corpus ChristiCorpus ChristiTXUSA
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10
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Hancock ZB, Lehmberg ES, Bradburd GS. Neo-darwinism still haunts evolutionary theory: A modern perspective on Charlesworth, Lande, and Slatkin (1982). Evolution 2021; 75:1244-1255. [PMID: 33999415 DOI: 10.1111/evo.14268] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/14/2021] [Accepted: 05/14/2021] [Indexed: 12/31/2022]
Abstract
The Modern Synthesis (or "Neo-Darwinism"), which arose out of the reconciliation of Darwin's theory of natural selection and Mendel's research on genetics, remains the foundation of evolutionary theory. However, since its inception, it has been a lightning rod for criticism, which has ranged from minor quibbles to complete dismissal. Among the most famous of the critics was Stephen Jay Gould, who, in 1980, proclaimed that the Modern Synthesis was "effectively dead." Gould and others claimed that the action of natural selection on random mutations was insufficient on its own to explain patterns of macroevolutionary diversity and divergence, and that new processes were required to explain findings from the fossil record. In 1982, Charlesworth, Lande, and Slatkin published a response to this critique in Evolution, in which they argued that Neo-Darwinism was indeed sufficient to explain macroevolutionary patterns. In this Perspective for the 75th Anniversary of the Society for the Study of Evolution, we review Charlesworth et al. in its historical context and provide modern support for their arguments. We emphasize the importance of microevolutionary processes in the study of macroevolutionary patterns. Ultimately, we conclude that punctuated equilibrium did not represent a major revolution in evolutionary biology - although debate on this point stimulated significant research and furthered the field - and that Neo-Darwinism is alive and well.
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Affiliation(s)
- Zachary B Hancock
- Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, Michigan.,Department of Integrative Biology, Michigan State University, East Lansing, Michigan
| | - Emma S Lehmberg
- Department of Biology, Texas A&M University, College Station, Texas.,Ecology and Evolutionary Biology Interdisciplinary Program, Texas A&M University, College Station, Texas
| | - Gideon S Bradburd
- Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, Michigan.,Department of Integrative Biology, Michigan State University, East Lansing, Michigan
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11
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Lou F, Gao T, Han Z. Identification of putative key genes for thermal adaptation in the Japanese mantis shrimp (Oratosquilla oratoria) through population genomic analysis. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2021; 39:100828. [PMID: 33838619 DOI: 10.1016/j.cbd.2021.100828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 03/19/2021] [Accepted: 03/21/2021] [Indexed: 10/21/2022]
Abstract
Little is known about the mechanisms underlying the relationship between genetic variation and the adaptation of Oratosquilla oratoria populations to different habitat temperature. Here, the genome-wide genetic information of three O. oratoria populations were obtained by IIB restriction site-associated DNA (2b-RAD) sequencing and 2403 single-nucleotide polymorphisms (SNPs) were identified. Based on the 2403 SNPs, we found a remarkable genetic differentiation between the Yellow Sea and the East China Sea groups of O. oratoria. Furthermore, 63 SNPs are thought to be associated with different sea temperatures. Based on the 63 SNPs, it is hypothesised that the long-term temperature differences may contribute to the variation of genes associated with multiple biological functions, such as material metabolism, cytoskeleton, cellular processes, inflammatory response and hormonal regulation. This study provides new information for elucidating the molecular mechanisms underlying the relationship between genetic variation and the adaptation of Oratosquilla oratoria populations to different temperature.
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Affiliation(s)
- Fangrui Lou
- Fishery College, Zhejiang Ocean University, Zhoushan, Zhejiang 316022, China; School of Ocean, Yantai University, Yantai, Shandong 264005, China
| | - Tianxiang Gao
- Fishery College, Zhejiang Ocean University, Zhoushan, Zhejiang 316022, China
| | - Zhiqiang Han
- Fishery College, Zhejiang Ocean University, Zhoushan, Zhejiang 316022, China.
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12
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Bal TMP, Llanos-Garrido A, Chaturvedi A, Verdonck I, Hellemans B, Raeymaekers JAM. Adaptive Divergence under Gene Flow along an Environmental Gradient in Two Coexisting Stickleback Species. Genes (Basel) 2021; 12:435. [PMID: 33803820 PMCID: PMC8003309 DOI: 10.3390/genes12030435] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 03/12/2021] [Accepted: 03/15/2021] [Indexed: 12/13/2022] Open
Abstract
There is a general and solid theoretical framework to explain how the interplay between natural selection and gene flow affects local adaptation. Yet, to what extent coexisting closely related species evolve collectively or show distinctive evolutionary responses remains a fundamental question. To address this, we studied the population genetic structure and morphological differentiation of sympatric three-spined and nine-spined stickleback. We conducted genotyping-by-sequencing and morphological trait characterisation using 24 individuals of each species from four lowland brackish water (LBW), four lowland freshwater (LFW) and three upland freshwater (UFW) sites in Belgium and the Netherlands. This combination of sites allowed us to contrast populations from isolated but environmentally similar locations (LFW vs. UFW), isolated but environmentally heterogeneous locations (LBW vs. UFW), and well-connected but environmentally heterogenous locations (LBW vs. LFW). Overall, both species showed comparable levels of genetic diversity and neutral genetic differentiation. However, for all three spatial scales, signatures of morphological and genomic adaptive divergence were substantially stronger among populations of the three-spined stickleback than among populations of the nine-spined stickleback. Furthermore, most outlier SNPs in the two species were associated with local freshwater sites. The few outlier SNPs that were associated with the split between brackish water and freshwater populations were located on one linkage group in three-spined stickleback and two linkage groups in nine-spined stickleback. We conclude that while both species show congruent evolutionary and genomic patterns of divergent selection, both species differ in the magnitude of their response to selection regardless of the geographical and environmental context.
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Affiliation(s)
- Thijs M. P. Bal
- Faculty of Biosciences and Aquaculture, Nord University, N-8049 Bodø, Norway;
| | | | - Anurag Chaturvedi
- Department of Ecology and Evolution, University of Lausanne, Biophore Building, 1015 Lausanne, Switzerland;
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, B-3000 Leuven, Belgium; (I.V.); (B.H.)
| | - Io Verdonck
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, B-3000 Leuven, Belgium; (I.V.); (B.H.)
| | - Bart Hellemans
- Laboratory of Biodiversity and Evolutionary Genomics, KU Leuven, B-3000 Leuven, Belgium; (I.V.); (B.H.)
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13
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Thia JA, McGuigan K, Liggins L, Figueira WF, Bird CE, Mather A, Evans JL, Riginos C. Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation. Mol Ecol 2021; 30:4392-4414. [PMID: 33544414 DOI: 10.1111/mec.15829] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 01/12/2021] [Accepted: 01/28/2021] [Indexed: 11/28/2022]
Abstract
Interactions among selection, gene flow, and drift affect the trajectory of adaptive evolution. In natural populations, the direction and magnitude of these processes can be variable across different spatial, temporal, or ontogenetic scales. Consequently, variability in evolutionary processes affects the predictability or stochasticity of microevolutionary outcomes. We studied an intertidal fish, Bathygobius cocosensis (Bleeker, 1854), to understand how space, time, and life stage structure genetic and phenotypic variation in a species with potentially extensive dispersal and a complex life cycle (larval dispersal preceding benthic recruitment). We sampled juvenile and adult life stages, at three sites, over three years. Genome-wide SNPs uncovered a pattern of chaotic genetic patchiness, that is, weak-but-significant patchy spatial genetic structure that was variable through time and between life stages. Outlier locus analyses suggested that targets of spatially divergent selection were mostly temporally variable, though a significant number of spatial outlier loci were shared between life stages. Head shape, a putatively ecologically responsive (adaptive) phenotype in B. cocosensis also exhibited high temporal variability within sites. However, consistent spatial relationships between sites indicated that environmental similarities among sites may generate predictable phenotype distributions across space. Our study highlights the complex microevolutionary dynamics of marine systems, where consideration of multiple ecological dimensions can reveal both predictable and stochastic patterns in the distributions of genetic and phenotypic variation. Such considerations probably apply to species that possess short, complex life cycles, have large dispersal potential and fecundities, and that inhabit heterogeneous environments.
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Affiliation(s)
- Joshua A Thia
- School of Biological Sciences, The University of Queensland, Saint Lucia, QLD, Australia.,School of BioSciences, The University of Melbourne, Melbourne, VIC., Australia
| | - Katrina McGuigan
- School of Biological Sciences, The University of Queensland, Saint Lucia, QLD, Australia
| | - Libby Liggins
- School of Natural and Computational Sciences, Massey University, Auckland, New Zealand
| | - Will F Figueira
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia
| | - Christopher E Bird
- Department of Life Sciences, Texas A&M University Corpus Christi, Corpus Christi, TX, USA
| | - Andrew Mather
- School of Biological Sciences, The University of Queensland, Saint Lucia, QLD, Australia
| | - Jennifer L Evans
- School of Biological Sciences, The University of Queensland, Saint Lucia, QLD, Australia
| | - Cynthia Riginos
- School of Biological Sciences, The University of Queensland, Saint Lucia, QLD, Australia
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14
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Martin CA, Armstrong C, Illera JC, Emerson BC, Richardson DS, Spurgin LG. Genomic variation, population history and within-archipelago adaptation between island bird populations. ROYAL SOCIETY OPEN SCIENCE 2021; 8:201146. [PMID: 33972847 PMCID: PMC8074581 DOI: 10.1098/rsos.201146] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 01/11/2021] [Indexed: 05/13/2023]
Abstract
Oceanic island archipelagos provide excellent models to understand evolutionary processes. Colonization events and gene flow can interact with selection to shape genetic variation at different spatial scales. Landscape-scale variation in biotic and abiotic factors may drive fine-scale selection within islands, while long-term evolutionary processes may drive divergence between distantly related populations. Here, we examine patterns of population history and selection between recently diverged populations of the Berthelot's pipit (Anthus berthelotii), a passerine endemic to three North Atlantic archipelagos. First, we use demographic trees and f3 statistics to show that genome-wide divergence across the species range is largely shaped by colonization and bottlenecks, with evidence of very weak gene flow between populations. Then, using a genome scan approach, we identify signatures of divergent selection within archipelagos at single nucleotide polymorphisms (SNPs) in genes potentially associated with craniofacial development and DNA repair. We did not detect within-archipelago selection at the same SNPs as were detected previously at broader spatial scales between archipelagos, but did identify signatures of selection at loci associated with similar biological functions. These findings suggest that similar ecological factors may repeatedly drive selection between recently separated populations, as well as at broad spatial scales across varied landscapes.
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Affiliation(s)
- Claudia A. Martin
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Claire Armstrong
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
- NERC Biomolecular Analysis Facility, Department of Animal and Plant Sciences, University of Sheffield, Alfred Denny Building, Western Bank, Sheffield S10 2TN, UK
| | - Juan Carlos Illera
- Oviedo University, Campus of Mieres, Research Unit of Biodiversity (UO-CSIC-PA), Research Building, 5th floor, c/Gonzalo Gutiérrez Quirós, s/n, 33600 Mieres, Asturias, Spain
| | - Brent C. Emerson
- Island Ecology and Evolution Research Group, Institute of Natural Products and Agrobiology (IPNA-CSIC), C/Astrofísico Francisco Sánchez 3, 38206 La Laguna, Tenerife, Canary Islands, Spain
| | - David S. Richardson
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Lewis G. Spurgin
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
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15
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Zhao L, Wang T, Qu F, Han Z. A non-exhaustive survey revealed possible genetic similarity in mitochondrial adaptive evolution of marine fish species in the northwestern Pacific. Zookeys 2020; 974:121-130. [PMID: 33110380 PMCID: PMC7557527 DOI: 10.3897/zookeys.974.55934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Accepted: 08/25/2020] [Indexed: 11/13/2022] Open
Abstract
Mitochondrial coding genes involved in the oxidative phosphorylation pathway play vitally important roles in energy production and thermal adaptation. Investigating the underlying molecular mechanism of mitochondrial adaptive evolution is crucial for understanding biodiversity and ecological radiation. In this study, we collated population genetic studies of marine fish species in the northwestern Pacific based on mitochondrial cytochrome b gene sequences, to investigate whether similar patterns could be detected in mitochondrial adaptive evolution. After filtering, nine studies containing eight marine fish species (Ammodytespersonatus, Boleophthalmuspectinirostris, Larimichthyspolyactis, Mugilcephalus, Pampusargenteus, Platycephalus sp.1, Sebastiscusmarmoratus, and Trachidermusfasciatus) belonging to eight different families were retained. Multiple codon-based approaches were used to identify potential sites under selection in each species. By comparison, our results showed that the posterior part of the mitochondrial cytochrome b gene (particularly codon 372 and its neighboring sites) seemed to be involved in the adaptive evolution process, suggesting potential genetic similarity among distantly related species. We also summarized four types of adaptive patterns in the reviewed species, and suggest that the level of genetic differentiation and mitochondrial adaptive evolution might be correlated. Further studies are needed to confirm such relationship by detecting RNA-level evidence and investigating more species and samples.
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16
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Gauzere J, Klein EK, Brendel O, Davi H, Oddou-Muratorio S. Microgeographic adaptation and the effect of pollen flow on the adaptive potential of a temperate tree species. THE NEW PHYTOLOGIST 2020; 227:641-653. [PMID: 32167572 DOI: 10.1111/nph.16537] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 02/29/2020] [Indexed: 06/10/2023]
Abstract
In species with long-distance dispersal capacities and inhabiting a large ecological niche, local selection and gene flow are expected to be major evolutionary forces affecting the genetic adaptation of natural populations. Yet, in species such as trees, evidence of microgeographic adaptation and the quantitative assessment of the impact of gene flow on adaptive genetic variation are still limited. Here, we used extensive genetic and phenotypic data from European beech seedlings collected along an elevation gradient, and grown in a common garden, to study the signature of selection on the divergence of eleven potentially adaptive traits, and to assess the role of gene flow in resupplying adaptive genetic variation. We found a significant signal of adaptive differentiation among plots separated by < 1 km, with selection acting on growth and phenological traits. Consistent with theoretical expectations, our results suggest that pollen dispersal contributes to increase genetic diversity for these locally differentiated traits. Our results thus highlight that local selection is an important evolutionary force in natural tree populations and suggest that management interventions to facilitate movement of gametes along short ecological gradients would boost genetic diversity of individual tree populations, and enhance their adaptive potential to rapidly changing environments.
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Affiliation(s)
- Julie Gauzere
- INRAE, URFM, Avignon, 84000, France
- INRAE, BioSP, Avignon, 84000, France
- Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JT, UK
| | | | - Oliver Brendel
- Université de Lorraine, AgroParisTech, INRAE, UMR Silva, Nancy, 54000, France
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17
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Blob RW, Baumann T, Diamond KM, Young VKH, Schoenfuss HL. Functional correlations of axial muscle fiber type proportions in the waterfall-climbing Hawaiian stream fish Sicyopterus stimpsoni. J Anat 2020; 236:1160-1166. [PMID: 32092791 PMCID: PMC7219618 DOI: 10.1111/joa.13169] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 01/20/2020] [Accepted: 01/23/2020] [Indexed: 11/27/2022] Open
Abstract
Assessing the factors that contribute to successful locomotor performance can provide critical insight into how animals survive in challenging habitats. Locomotion is powered by muscles, so that differences in the relative proportions of red (slow-oxidative) vs. white (fast-glycolytic) fibers can have significant implications for locomotor performance. We compared the relative proportions of axial red muscle fibers between groups of juveniles of the amphidromous gobiid fish, Sicyopterus stimpsoni, from the Hawaiian Islands. Juveniles of this species migrate from the ocean into freshwater streams, navigating through a gauntlet of predators that require rapid escape responses, before reaching waterfalls which must be climbed (using a slow, inching behavior) to reach adult breeding habitats. We found that fish from Kaua'i have a smaller proportion of red fibers in their tail muscles than fish from Hawai'i, matching expectations based on the longer pre-waterfall stream reaches of Kaua'i that could increase exposure to predators, making reduction of red muscle and increases in white muscle advantageous. However, no difference in red muscle proportions was identified between fish that were either successful or unsuccessful in scaling model waterfalls during laboratory climbing trials, suggesting that proportions of red muscle are near a localized fitness peak among Hawaiian individuals.
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Affiliation(s)
- Richard W. Blob
- Department of Biological SciencesClemson UniversityClemsonSCUSA
| | - Travis Baumann
- Aquatic Toxicology LaboratorySt. Cloud State UniversitySt. CloudMNUSA
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18
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Heim-Ballew H, Moody KN, Blum MJ, McIntyre PB, Hogan JD. Migratory flexibility in native Hawai'ian amphidromous fishes. JOURNAL OF FISH BIOLOGY 2020; 96:456-468. [PMID: 31814124 DOI: 10.1111/jfb.14224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Accepted: 12/05/2019] [Indexed: 06/10/2023]
Abstract
We assessed the prevalence of life history variation across four of the five native amphidromous Hawai'ian gobioids to determine whether some or all exhibit evidence of partial migration. Analysis of otolith Sr.: Ca concentrations affirmed that all are amphidromous and revealed evidence of partial migration in three of the four species. We found that 25% of Lentipes concolor (n = 8), 40% of Eleotris sandwicensis (n = 20) and 29% of Stenogobius hawaiiensis (n = 24) did not exhibit a migratory life-history. In contrast, all individuals of Sicyopterus stimpsoni (n = 55) included in the study went to sea as larvae. Lentipes concolor exhibited the shortest mean larval duration (LD) at 87 days, successively followed by E. sandwicensis (mean LD = 102 days), S. hawaiiensis (mean LD = 114 days) and S. stimpsoni (mean LD = 120 days). These findings offer a fresh perspective on migratory life histories that can help improve efforts to conserve and protect all of these and other at-risk amphidromous species that are subject to escalating anthropogenic pressures in both freshwater and marine environments.
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Affiliation(s)
- Heidi Heim-Ballew
- Department of Life Sciences, Texas A&M University-Corpus Christi, Corpus Christi, Texas, USA
| | - Kristine N Moody
- Department of Ecology and Evolutionary Biology, University of Tennessee-Knoxville, Knoxville, Tennessee, USA
| | - Michael J Blum
- Department of Ecology and Evolutionary Biology, University of Tennessee-Knoxville, Knoxville, Tennessee, USA
| | - Peter B McIntyre
- Center for Limnology, University of Wisconsin - Madison, Madison, Wisconsin, USA
- Department of Natural Resources, Cornell University, Ithaca, New York, USA
| | - James D Hogan
- Department of Life Sciences, Texas A&M University-Corpus Christi, Corpus Christi, Texas, USA
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19
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Cabalzar AP, Fields PD, Kato Y, Watanabe H, Ebert D. Parasite-mediated selection in a natural metapopulation of Daphnia magna. Mol Ecol 2019; 28:4770-4785. [PMID: 31591747 DOI: 10.1111/mec.15260] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 09/17/2019] [Accepted: 09/27/2019] [Indexed: 01/03/2023]
Abstract
Parasite-mediated selection varying across time and space in metapopulations is expected to result in host local adaptation and the maintenance of genetic diversity in disease-related traits. However, nonadaptive processes like migration and extinction-(re)colonization dynamics might interfere with adaptive evolution. Understanding how adaptive and nonadaptive processes interact to shape genetic variability in life-history and disease-related traits can provide important insights into their evolution in subdivided populations. Here we investigate signatures of spatially fluctuating, parasite-mediated selection in a natural metapopulation of Daphnia magna. Host genotypes from infected and uninfected populations were genotyped at microsatellite markers, and phenotyped for life-history and disease traits in common garden experiments. Combining phenotypic and genotypic data a QST -FST -like analysis was conducted to test for signatures of parasite mediated selection. We observed high variation within and among populations for phenotypic traits, but neither an indication of host local adaptation nor a cost of resistance. Infected populations have a higher gene diversity (Hs) than uninfected populations and Hs is strongly positively correlated with fitness. These results suggest a strong parasite effect on reducing population level inbreeding. We discuss how stochastic processes related to frequent extinction-(re)colonization dynamics as well as host and parasite migration impede the evolution of resistance in the infected populations. We suggest that the genetic and phenotypic patterns of variation are a product of dynamic changes in the host gene pool caused by the interaction of colonization bottlenecks, inbreeding, immigration, hybrid vigor, rare host genotype advantage and parasitism. Our study highlights the effect of the parasite in ameliorating the negative fitness consequences caused by the high drift load in this metapopulation.
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Affiliation(s)
- Andrea P Cabalzar
- Department of Environmental Sciences, Zoology, University of Basel, Basel, Switzerland
| | - Peter D Fields
- Department of Environmental Sciences, Zoology, University of Basel, Basel, Switzerland
| | - Yasuhiko Kato
- Department of Biotechnology, Division of Advance Science and Biotechnology, Graduate School of Engineering, Osaka University, Suita, Japan
| | - Hajime Watanabe
- Department of Biotechnology, Division of Advance Science and Biotechnology, Graduate School of Engineering, Osaka University, Suita, Japan
| | - Dieter Ebert
- Department of Environmental Sciences, Zoology, University of Basel, Basel, Switzerland.,Tvärminne Zoological Station, Tvärminne, Finland
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20
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Kaemingk MA, Swearer SE, Bury SJ, Shima JS. Landscape edges shape dispersal and population structure of a migratory fish. Oecologia 2019; 190:579-588. [PMID: 31230154 DOI: 10.1007/s00442-019-04440-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 06/17/2019] [Indexed: 10/26/2022]
Abstract
Many freshwater organisms have a life-history stage that can disperse through seawater. This has obvious benefits for colonization and connectivity of fragmented sub-populations, but requires a physiologically challenging migration across a salinity boundary. We consider the role of landscape boundaries between freshwater and seawater habitats, and evaluate their potential effects on traits and developmental histories of larvae and juveniles (i.e., dispersing life-history stages) of an amphidromous fish, Galaxias maculatus. We sampled juvenile fish on their return to 20 rivers in New Zealand: 10 rivers had abrupt transitions to the sea (i.e., emptying to an open coastline); these were paired with 10 nearby rivers that had gradual transitions to the sea (i.e., emptying into estuarine embayments). We reconstructed individual dispersal histories using otolith microstructure, otolith microchemistry, and stable isotope analysis. We found that fish recruiting to embayment rivers had distinct dispersal and foraging histories, were slower growing, smaller in size, and older than fish recruiting to nearby non-embayment rivers. Our results indicate that landscape edges can affect dispersal capabilities of aquatic organisms, potentially leading to divergent life-history strategies (i.e., limited- versus widespread-dispersal). Patterns also suggest that dispersal potential among landscape boundaries can create heterogeneity in the traits of individuals, with implications for metapopulation dynamics.
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Affiliation(s)
- M A Kaemingk
- Victoria University Coastal Ecology Laboratory, School of Biological Sciences, Victoria University of Wellington, Wellington, 6140, New Zealand. .,Current Address: Nebraska Cooperative Fish and Wildlife Research Unit, School of Natural Resources, University of Nebraska, Lincoln, NE, 68583, USA.
| | - S E Swearer
- School of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia
| | - S J Bury
- National Institute of Water and Atmospheric Research Ltd, Greta Point, 301 Evans Bay Parade, Hataitai, Wellington, 6021, New Zealand
| | - J S Shima
- Victoria University Coastal Ecology Laboratory, School of Biological Sciences, Victoria University of Wellington, Wellington, 6140, New Zealand
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21
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Mayerl CJ, Hicks KE, Blob RW. Differences in kinematic plasticity between freshwater turtle species underlie differences in swimming performance in response to varying flow conditions. Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
The distribution and performance of aquatic vertebrates can be linked strongly to their ability to perform in variable conditions of flowing water. Performance in these variable conditions can be affected by both morphology and behaviour, and animals that experience more variable environments often show greater behavioural plasticity that improves performance in those environments. One common metric of performance is swimming stability, which can constitute a majority of the daily energy budget of swimming animals. We compared the body oscillations arising from recoil forces of the limbs of two species of freshwater turtles as they swam in different flow conditions: the lentic specialist Emydura subglobosa and the habitat generalist Chrysemys picta. We found that E. subglobosa experienced more limited oscillations in still water than C. picta, but that C. picta had a greater kinematic response to increased flow speed that might contribute to their improved performance in flowing water. These results provide insight into how secondarily aquatic tetrapods respond to the functional demands of variation in flow, helping to build understanding of the relationship between energetics, kinematics and performance of such lineages in different environments.
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Affiliation(s)
- Christopher J Mayerl
- Department of Anatomy and Neurobiology, Northeast Ohio Medical University, Rootstown, OH, USA
| | - Kirsten E Hicks
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
| | - Richard W Blob
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
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22
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Diamond KM, Lagarde R, Schoenfuss HL, Walker JA, Ponton D, Blob RW. Relationship of escape performance with predator regime and ontogeny in fishes. Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz055] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- Kelly M Diamond
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
| | - RaphaëL Lagarde
- Hydrô Réunion, Z.I des Sables, Etang Salé, La Réunion, France
- ENTROPIE, IRD-Université de La Réunion-CNRS, Laboratoire d’Excellence CORAIL, c/o Université de Perpignan Via Domitia, Perpignan, France
| | - Heiko L Schoenfuss
- Aquatic Toxicology Laboratory, Saint Cloud State University, Saint Cloud, MN, USA
| | - Jeffrey A Walker
- Department of Biological Sciences, University of Southern Maine, Portland, ME, USA
| | - Dominique Ponton
- ENTROPIE, IRD-Université de La Réunion-CNRS, Laboratoire d’Excellence CORAIL, c/o Université de Perpignan Via Domitia, Perpignan, France
| | - Richard W Blob
- Department of Biological Sciences, Clemson University, Clemson, SC, USA
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23
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Moody KN, Wren JLK, Kobayashi DR, Blum MJ, Ptacek MB, Blob RW, Toonen RJ, Schoenfuss HL, Childress MJ. Evidence of local adaptation in a waterfall-climbing Hawaiian goby fish derived from coupled biophysical modeling of larval dispersal and post-settlement selection. BMC Evol Biol 2019; 19:88. [PMID: 30975077 PMCID: PMC6458715 DOI: 10.1186/s12862-019-1413-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Accepted: 03/26/2019] [Indexed: 12/24/2022] Open
Abstract
Background Local adaptation of marine and diadromous species is thought to be a product of larval dispersal, settlement mortality, and differential reproductive success, particularly in heterogeneous post-settlement habitats. We evaluated this premise with an oceanographic passive larval dispersal model coupled with individual-based models of post-settlement selection and reproduction to infer conditions that underlie local adaptation in Sicyopterus stimpsoni, an amphidromous Hawaiian goby known for its ability to climb waterfalls. Results Our model results demonstrated that larval dispersal is spatio-temporally asymmetric, with more larvae dispersed from the southeast (the Big Island) to northwest (Kaua‘i) along the archipelago, reflecting prevailing conditions such as El Niño/La Niña oscillations. Yet connectivity is nonetheless sufficient to result in homogenous populations across the archipelago. We also found, however, that ontogenetic shifts in habitat can give rise to adaptive morphological divergence when the strength of predation-driven post-settlement selection crosses a critical threshold. Notably, our simulations showed that larval dispersal is not the only factor determining the likelihood of morphological divergence. We found adaptive potential and evolutionary trajectories of S. stimpsoni were greater on islands with stronger environmental gradients and greater variance in larval cohort morphology due to fluctuating immigration. Conclusions Contrary to expectation, these findings indicate that immigration can act in concert with selection to favor local adaptation and divergence in species with marine larval dispersal. Further development of model simulations, parameterized to reflect additional empirical estimates of abiotic and biotic factors, will help advance our understanding of the proximate and ultimate mechanisms driving adaptive evolution, population resilience, and speciation in marine-associated species. Electronic supplementary material The online version of this article (10.1186/s12862-019-1413-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Kristine N Moody
- Department of Ecology and Evolutionary Biology, University of Tennessee Knoxville, Knoxville, TN, 37996, USA. .,The ByWater Institute, Tulane University, New Orleans, LA, 70118, USA. .,Department of Biological Sciences, Clemson University, Clemson, SC, 29634, USA.
| | - Johanna L K Wren
- Department of Oceanography, School of Ocean and Earth Science and Technology (SOEST), University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.,Joint Institute of Marine and Atmospheric Research, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.,Pacific Islands Fisheries Science Center, NOAA/NMFS, NOAA IRC, Honolulu, HI, 96818, USA
| | - Donald R Kobayashi
- Pacific Islands Fisheries Science Center, NOAA/NMFS, NOAA IRC, Honolulu, HI, 96818, USA
| | - Michael J Blum
- Department of Ecology and Evolutionary Biology, University of Tennessee Knoxville, Knoxville, TN, 37996, USA.,The ByWater Institute, Tulane University, New Orleans, LA, 70118, USA
| | - Margaret B Ptacek
- Department of Biological Sciences, Clemson University, Clemson, SC, 29634, USA
| | - Richard W Blob
- Department of Biological Sciences, Clemson University, Clemson, SC, 29634, USA
| | - Robert J Toonen
- Hawai'i Institute of Marine Biology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA
| | - Heiko L Schoenfuss
- Aquatic Toxicology Laboratory, St. Cloud State University, St Cloud, MN, 56301, USA
| | - Michael J Childress
- Department of Biological Sciences, Clemson University, Clemson, SC, 29634, USA
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24
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Moore CS, Ruocchio MJ, Blakeslee AM. Distribution and population structure in the naked goby Gobiosoma bosc (Perciformes: Gobiidae) along a salinity gradient in two western Atlantic estuaries. PeerJ 2018; 6:e5380. [PMID: 30123709 PMCID: PMC6086083 DOI: 10.7717/peerj.5380] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 07/11/2018] [Indexed: 11/25/2022] Open
Abstract
Many species of fish produce larvae that undergo a prolonged dispersal phase. However, evidence from a number of recent studies on demersal fishes suggests that the dispersal of propagules may not be strongly correlated with gene flow. Instead, other factors like larval behavior and the availability of preferred settlement habitat may be more important to maintaining population structure. We used an ecologically important benthic fish species, Gobiosoma bosc (naked goby), to investigate local and regional scale population structure and gene flow along a salinity gradient (∼3 ppt to ∼18 ppt) in two North Carolina estuaries. G. bosc is an abundant and geographically widespread species that requires complex but patchy microhabitat (e.g. oyster reefs, rubble, woody debris) for reproduction and refuge. We sequenced 155 fish from 10 sites, using a common barcoding gene (COI). We also included recent sequence data from GenBank to determine how North Carolina populations fit into the larger biogeographic understanding of this species. In North Carolina, we found a significant amount of gene flow within and between estuaries. Our analysis also showed high predicted genetic diversity based upon a large number of rare haplotypes found within many of our sampled populations. Moreover, we detected a number of new haplotypes in North Carolina that had not yet been observed in prior work. Sampling along a salinity gradient did not reveal any significant positive or negative correlations between salinity and genetic diversity, nor the proportion of singleton haplotypes, with the exception of a positive correlation between salinity standard deviation and genetic diversity. We also found evidence that an introduced European population of naked gobies may have originated from an Atlantic source population. Altogether, this system offers a compelling way to evaluate whether factors other than dispersal per se mediate recruitment in an estuarine-dependent species of fish with a larval dispersal phase. It also demonstrates the importance of exploring both smaller and larger scale population structure in marine organisms to better understand local and regional patterns of population connectivity and gene flow.
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Affiliation(s)
- Christopher S. Moore
- Biology Department, East Carolina University, Greenville, NC, United States of America
| | - Matthew J. Ruocchio
- Biology Department, East Carolina University, Greenville, NC, United States of America
| | - April M.H. Blakeslee
- Biology Department, East Carolina University, Greenville, NC, United States of America
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Lagarde R, Borie G, Blob RW, Schoenfuss HL, Ponton D. Intra‐ and inter‐specific morphological diversity of amphidromous gobies influences waterfall‐climbing performance. J Zool (1987) 2018. [DOI: 10.1111/jzo.12600] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- R. Lagarde
- Hydrô Réunion Etang Sale France
- Laboratoire d'Excellence CORAIL ENTROPIE, IRD CNRS Université de La Réunion Sainte Clotilde Cedex France
| | - G. Borie
- Hydrô Réunion Etang Sale France
- OCEA Consult’ Ravine des Cabris France
| | - R. W. Blob
- Department of Biological Sciences Clemson University Clemson SC USA
| | - H. L. Schoenfuss
- Aquatic Toxicology Laboratory St Cloud State University St Cloud MN USA
| | - D. Ponton
- Laboratoire d'Excellence CORAIL ENTROPIE, IRD CNRS Université de La Réunion Sainte Clotilde Cedex France
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26
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Dudaniec RY, Yong CJ, Lancaster LT, Svensson EI, Hansson B. Signatures of local adaptation along environmental gradients in a range-expanding damselfly (Ischnura elegans). Mol Ecol 2018; 27:2576-2593. [DOI: 10.1111/mec.14709] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Revised: 03/23/2018] [Accepted: 04/03/2018] [Indexed: 12/18/2022]
Affiliation(s)
- Rachael Y. Dudaniec
- Department of Biological Sciences; Macquarie University; Sydney NSW Australia
| | - Chuan Ji Yong
- Department of Biological Sciences; Macquarie University; Sydney NSW Australia
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27
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Fitzpatrick SW, Handelsman CA, Torres-Dowdall J, Ruell EW, Broder ED, Kronenberger JA, Reznick DN, Ghalambor CK, Angeloni LM, Funk WC. Gene Flow Constrains and Facilitates Genetically Based Divergence in Quantitative Traits. COPEIA 2017. [DOI: 10.1643/ci-16-559] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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28
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Contrasting post-settlement selection results in many-to-one mapping of high performance phenotypes in the Hawaiian waterfall-climbing goby Sicyopterus stimpsoni. Evol Ecol 2017. [DOI: 10.1007/s10682-017-9889-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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29
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Fitzpatrick SW, Gerberich JC, Angeloni LM, Bailey LL, Broder ED, Torres‐Dowdall J, Handelsman CA, López‐Sepulcre A, Reznick DN, Ghalambor CK, Chris Funk W. Gene flow from an adaptively divergent source causes rescue through genetic and demographic factors in two wild populations of Trinidadian guppies. Evol Appl 2016; 9:879-91. [PMID: 27468306 PMCID: PMC4947150 DOI: 10.1111/eva.12356] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Accepted: 12/10/2015] [Indexed: 01/17/2023] Open
Abstract
Genetic rescue, an increase in population growth owing to the infusion of new alleles, can aid the persistence of small populations. Its use as a management tool is limited by a lack of empirical data geared toward predicting effects of gene flow on local adaptation and demography. Experimental translocations provide an ideal opportunity to monitor the demographic consequences of gene flow. In this study we take advantage of two experimental introductions of Trinidadian guppies to test the effects of gene flow on downstream native populations. We individually marked guppies from the native populations to monitor population dynamics for 3 months before and 26 months after gene flow. We genotyped all individuals caught during the first 17 months at microsatellite loci to classify individuals by their genetic ancestry: native, immigrant, F1 hybrid, F2 hybrid, or backcross. Our study documents a combination of demographic and genetic rescue over multiple generations under fully natural conditions. Within both recipient populations, we found substantial and long-term increases in population size that could be attributed to high survival and recruitment caused by immigration and gene flow from the introduction sites. Our results suggest that low levels of gene flow, even from a divergent ecotype, can provide a substantial demographic boost to small populations, which may allow them to withstand environmental stochasticity.
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Affiliation(s)
- Sarah W. Fitzpatrick
- Kellogg Biological StationDepartment of Integrative BiologyMichigan State UniversityHickory CornersMIUSA
- Department of BiologyColorado State UniversityFort CollinsCOUSA
| | | | - Lisa M. Angeloni
- Department of BiologyColorado State UniversityFort CollinsCOUSA
- Graduate Degree Program in EcologyColorado State UniversityFort CollinsCOUSA
| | - Larissa L. Bailey
- Department of Fish, Wildlife, and Conservation BiologyColorado State UniversityFort CollinsCOUSA
| | - Emily D. Broder
- Department of BiologyColorado State UniversityFort CollinsCOUSA
- Graduate Degree Program in EcologyColorado State UniversityFort CollinsCOUSA
| | - Julian Torres‐Dowdall
- Lehrstuhl für Zoologie und EvolutionsbiologieDepartment of BiologyUniversity of KonstanzKonstanzGermany
| | | | - Andrés López‐Sepulcre
- CNRS UMR 7618Institute of Ecology and Environmental Sciences of Paris (iEES)Université Pierre et Marie CurieParisFrance
- Department of Biological and Environmental SciencesCenter of Excellence in Biological InteractionsUniversity of JyväskyläJyväskyläFinland
| | | | - Cameron K. Ghalambor
- Department of BiologyColorado State UniversityFort CollinsCOUSA
- Graduate Degree Program in EcologyColorado State UniversityFort CollinsCOUSA
| | - W. Chris Funk
- Department of BiologyColorado State UniversityFort CollinsCOUSA
- Graduate Degree Program in EcologyColorado State UniversityFort CollinsCOUSA
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30
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Malard LA, McGuigan K, Riginos C. Site fidelity, size, and morphology may differ by tidal position for an intertidal fish, Bathygobius cocosensis (Perciformes-Gobiidae), in Eastern Australia. PeerJ 2016; 4:e2263. [PMID: 27547568 PMCID: PMC4974941 DOI: 10.7717/peerj.2263] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Accepted: 06/27/2016] [Indexed: 11/20/2022] Open
Abstract
The intertidal zone is a transitional environment that undergoes daily environmental fluctuations as tides rise and fall. Relatively few fish species are adapted to endure the physiological pressures of this environment. This study focused on Bathygobius cocosensis (Gobiidae), a common intertidal fish in New South Wales, Australia. We investigated whether shore height impacted site fidelity, survival probability, fish size, and morphological traits with respect to tidal height. Mark-recapture methods were used over a five month period to determine if individuals in high shore pools had greater site fidelity; fish in high tide pools were more than twice as likely to be recaptured in their original pool than fish from low tide pools. High pool individuals were, on average, smaller with larger eyes and longer snouts relative to their size as compared to low pool individuals. We discuss several mechanisms that could cause the observed pattern in morphological variation. Ultimately, this study suggests that within species behaviour and morphology differ by tidal position for an intertidal fish.
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Affiliation(s)
- Lucie A Malard
- School of Biological Sciences, University of Queensland , St Lucia , QLD , Australia
| | - Katrina McGuigan
- School of Biological Sciences, University of Queensland , St Lucia , QLD , Australia
| | - Cynthia Riginos
- School of Biological Sciences, University of Queensland , St Lucia , QLD , Australia
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31
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Alda F, Gagne RB, Walter RP, Hogan JD, Moody KN, Zink F, McIntyre PB, Gilliam JF, Blum MJ. Colonization and demographic expansion of freshwater fauna across the Hawaiian archipelago. J Evol Biol 2016; 29:2054-2069. [DOI: 10.1111/jeb.12929] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 06/05/2016] [Accepted: 06/28/2016] [Indexed: 12/25/2022]
Affiliation(s)
- F. Alda
- Department of Ecology and Evolutionary Biology; Tulane University; New Orleans LA USA
- Tulane-Xavier Center for Bioenvironmental Research; Tulane University; New Orleans LA USA
| | - R. B. Gagne
- Department of Ecology and Evolutionary Biology; Tulane University; New Orleans LA USA
| | - R. P. Walter
- Department of Ecology and Evolutionary Biology; Tulane University; New Orleans LA USA
- Department of Biological Science; California State University, Fullerton; Fullerton CA USA
| | - J. D. Hogan
- Department of Ecology and Evolutionary Biology; Tulane University; New Orleans LA USA
- Department of Life Sciences; Texas A & M University - Corpus Christi; Corpus Christi TX USA
| | - K. N. Moody
- Tulane-Xavier Center for Bioenvironmental Research; Tulane University; New Orleans LA USA
- Department of Biological Sciences; Clemson University; Clemson SC USA
| | - F. Zink
- Department of Ecology and Evolutionary Biology; Tulane University; New Orleans LA USA
| | - P. B. McIntyre
- Center for Limnology; University of Wisconsin-Madison; Madison WI USA
| | - J. F. Gilliam
- Department of Biological Sciences; North Carolina State University; Raleigh NC USA
| | - M. J. Blum
- Department of Ecology and Evolutionary Biology; Tulane University; New Orleans LA USA
- Tulane-Xavier Center for Bioenvironmental Research; Tulane University; New Orleans LA USA
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32
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Diamond KM, Schoenfuss HL, Walker JA, Blob RW. Flowing water affects fish fast-starts: escape performance of the Hawaiian stream goby, Sicyopterus stimpsoni. J Exp Biol 2016; 219:3100-3105. [DOI: 10.1242/jeb.137554] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Accepted: 07/22/2016] [Indexed: 11/20/2022]
Abstract
Experimental measurements of escape performance in fishes have typically been conducted in still water; however, many fishes inhabit environments with flow that could impact escape behavior. We examined the influences of flow and predator attack direction on the escape behavior of fish, using juveniles of the amphidromous Hawaiian goby Sicyopterus stimpsoni. In nature, these fish must escape ambush predation while moving through streams with high-velocity flow. We measured the escape performance of juvenile gobies while exposing them to a range of water velocities encountered in natural streams and stimulating fish from three different directions. Frequency of response failure across treatments indicated strong effects of flow conditions and attack direction. Juvenile S. stimpsoni had uniformly high response rates for attacks from a caudal direction (opposite flow); however, response rates for attacks from a cranial direction (matching flow) decreased dramatically as flow speed increased. Mechanical stimuli produced by predators attacking in the same direction as flow might be masked by the flow environment, impairing the ability of prey to detect attacks. Thus, the likelihood of successful escape performance in fishes can depend critically on environmental context.
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Affiliation(s)
- Kelly M. Diamond
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
| | - Heiko L. Schoenfuss
- Aquatic Toxicology Laboratory, Saint Cloud State University, Saint Cloud, MN 56301, USA
| | - Jeffrey A. Walker
- Department of Biological Sciences, University of Southern Maine, Portland, ME, 04103, USA
| | - Richard W. Blob
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
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33
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Rieseberg L, Geraldes A. Editorial 2016. Mol Ecol 2016; 25:433-49. [DOI: 10.1111/mec.13508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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34
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Charmantier A, Doutrelant C, Dubuc-Messier G, Fargevieille A, Szulkin M. Mediterranean blue tits as a case study of local adaptation. Evol Appl 2015; 9:135-52. [PMID: 27087844 PMCID: PMC4780380 DOI: 10.1111/eva.12282] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Accepted: 05/27/2015] [Indexed: 02/01/2023] Open
Abstract
While the study of the origins of biological diversity across species has provided numerous examples of adaptive divergence, the realization that it can occur at microgeographic scales despite gene flow is recent, and scarcely illustrated. We review here evidence suggesting that the striking phenotypic differentiation in ecologically relevant traits exhibited by blue tits Cyanistes caeruleus in their southern range‐edge putatively reflects adaptation to the heterogeneity of the Mediterranean habitats. We first summarize the phenotypic divergence for a series of life history, morphological, behavioural, acoustic and colour ornament traits in blue tit populations of evergreen and deciduous forests. For each divergent trait, we review the evidence obtained from common garden experiments regarding a possible genetic origin of the observed phenotypic differentiation as well as evidence for heterogeneous selection. Second, we argue that most phenotypically differentiated traits display heritable variation, a fundamental requirement for evolution to occur. Third, we discuss nonrandom dispersal, selective barriers and assortative mating as processes that could reinforce local adaptation. Finally, we show how population genomics supports isolation – by – environment across landscapes. Overall, the combination of approaches converges to the conclusion that the strong phenotypic differentiation observed in Mediterranean blue tits is a fascinating case of local adaptation.
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Affiliation(s)
- Anne Charmantier
- Centre d'Ecologie Fonctionnelle et Evolutive Campus CNRS Montpellier France
| | - Claire Doutrelant
- Centre d'Ecologie Fonctionnelle et Evolutive Campus CNRS Montpellier France
| | - Gabrielle Dubuc-Messier
- Centre d'Ecologie Fonctionnelle et Evolutive Campus CNRS Montpellier France; Département des sciences biologiques Université du Québec à Montréal Succursalle centre-ville QC Canada
| | | | - Marta Szulkin
- Centre d'Ecologie Fonctionnelle et Evolutive Campus CNRS Montpellier France
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35
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Wainwright PC. Why are marine adaptive radiations rare in Hawai'i? Mol Ecol 2015; 24:523-4. [PMID: 25602031 DOI: 10.1111/mec.13063] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Revised: 12/29/2014] [Accepted: 12/30/2014] [Indexed: 11/29/2022]
Abstract
Islands can be sites of dynamic evolutionary radiations, and the Hawaiian Islands have certainly given us a bounty of insights into the processes and mechanisms of diversification. Adaptive radiations in silverswords and honeycreepers have inspired a generation of biologists with evidence of rapid diversification that resulted in exceptional levels of ecological and morphological diversity. In this issue of Molecular Ecology, tiny waterfall-climbing gobies make a case for their place among Hawaiian evolutionary elite. Moody et al. (2015) present an analysis of gene flow and local adaptation in six goby populations on Kaua'i and Hawai'i measured in three consecutive years to try to disentangle the relative role of local adaptation and gene flow in shaping diversity within Sicyopterus stimpsoni. Their study shows that strong patterns of local selection result in streams with gobies adapted to local conditions in spite of high rates of gene flow between stream populations and no evidence for significant genetic population structure. These results help us understand how local adaptation and gene flow are balanced in gobies, but these fishes also offer themselves as a model that illustrates why adaptive diversification in Hawai'i's marine fauna is so different from the terrestrial fauna.
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Affiliation(s)
- Peter C Wainwright
- Department of Evolution & Ecology, University of California, Davis, Davis, CA, 95616, USA
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