1
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Mmbando GS. The link between changing in host carbon allocation and resistance to Magnaporthe oryzae: a possible tactic for mitigating the rice blast fungus. PLANT SIGNALING & BEHAVIOR 2024; 19:2326870. [PMID: 38465846 PMCID: PMC10936674 DOI: 10.1080/15592324.2024.2326870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 02/29/2024] [Indexed: 03/12/2024]
Abstract
One of the most destructive diseases affecting rice is rice blast, which is brought on by the rice blast fungus Magnaporthe oryzae. The preventive measures, however, are not well established. To effectively reduce the negative effects of rice blasts on crop yields, it is imperative to comprehend the dynamic interactions between pathogen resistance and patterns of host carbon allocation. This review explores the relationship between variations in carbon allocation and rice plants' ability to withstand the damaging effects of M. oryzae. The review highlights potential strategies for altering host carbon allocation including transgenic, selective breeding, crop rotation, and nutrient management practices as a promising avenue for enhancing rice blast resistance. This study advances our knowledge of the interaction between plants' carbon allocation and M. oryzae resistance and provides stakeholders and farmers with practical guidance on mitigating the adverse effects of the rice blast globally. This information may be used in the future to create varieties that are resistant to M. oryzae.
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Affiliation(s)
- Gideon Sadikiel Mmbando
- Department of Biology, College of Natural and Mathematical Sciences, University of Dodoma, Dodoma, Tanzania
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2
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Xu X, Wei H, Yao K, Wu H, Huang T, Han M, Su T, Cao F. Integrative omics studies revealed synergistic link between sucrose metabolic isogenes and carbohydrates in poplar roots infected by Fusarium wilt. PLANT MOLECULAR BIOLOGY 2024; 114:29. [PMID: 38502380 DOI: 10.1007/s11103-024-01426-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 02/01/2024] [Indexed: 03/21/2024]
Abstract
Advances in carbohydrate metabolism prompted its essential role in defense priming and sweet immunity during plant-pathogen interactions. Nevertheless, upstream responding enzymes in the sucrose metabolic pathway and associated carbohydrate derivatives underlying fungal pathogen challenges remain to be deciphered in Populus, a model tree species. In silico deduction of genomic features, including phylogenies, exon/intron distributions, cis-regulatory elements, and chromosomal localization, identified 59 enzyme genes (11 families) in the Populus genome. Spatiotemporal expression of the transcriptome and the quantitative real-time PCR revealed a minuscule number of isogenes that were predominantly expressed in roots. Upon the pathogenic Fusarium solani (Fs) exposure, dynamic changes in the transcriptomics atlas and experimental evaluation verified Susy (PtSusy2 and 3), CWI (PtCWI3), VI (PtVI2), HK (PtHK6), FK (PtFK6), and UGPase (PtUGP2) families, displaying promotions in their expressions at 48 and 72 h of post-inoculation (hpi). Using the gas chromatography-mass spectrometry (GC-MS)-based non-targeted metabolomics combined with a high-performance ion chromatography system (HPICS), approximately 307 metabolites (13 categories) were annotated that led to the quantification of 46 carbohydrates, showing marked changes between three compared groups. By contrast, some sugars (e.g., sorbitol, L-arabitol, trehalose, and galacturonic acid) exhibited a higher accumulation at 72 hpi than 0 hpi, while levels of α-lactose and glucose decreased, facilitating them as potential signaling molecules. The systematic overview of multi-omics approaches to dissect the effects of Fs infection provides theoretical cues for understanding defense immunity depending on fine-tuned Suc metabolic gene clusters and synergistically linked carbohydrate pools in trees.
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Affiliation(s)
- Xianglei Xu
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China
| | - Haikun Wei
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China
| | - Kejun Yao
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China
| | - Hao Wu
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China
| | - Tingting Huang
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China
| | - Mei Han
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.
| | - Tao Su
- Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.
| | - Fuliang Cao
- College of Foresty, Nanjing Forestry University, Nanjing, China
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3
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Hu J, Duan Y, Hu J, Zhang S, Li G. Phylogenetic and Expression Analysis of the Sucrose Synthase and Sucrose Phosphate Synthase Gene Family in Potatoes. Metabolites 2024; 14:70. [PMID: 38276305 PMCID: PMC10820854 DOI: 10.3390/metabo14010070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/11/2024] [Accepted: 01/15/2024] [Indexed: 01/27/2024] Open
Abstract
Sucrose synthase (SUS) and sucrose phosphate synthase (SPS) are essential in plant sucrose metabolism. The potato is an important crop worldwide, but systematic analyses of the StSUS and StSPS gene families in potatoes are still lacking. Ten sucrose metabolism-related genes were identified in this study. The SUSs and SPSs could each be split into three subgroups through phylogenetic analysis. StSUSIc was the most highly expressed gene in different developmental tissues. Ka/Ks analysis showed that StSUSIb and StSUSIc were subjected to more-significant homozygous selection pressure. Our cis-acting element analysis of the StSUS and StSPS promoter sequences showed four elements: defense- and stress-responsive, hormone-responsive, light-responsive, and transcription factor elements. The expression of StSUS and StSPS genes was found to be regulated by circadian rhythm. In the treatments of 1% to 5% sucrose, glucose, and fructose, the expression of StSUS and StSPS family genes was enhanced by sucrose, but inhibited at high-glucose and fructose concentrations. This study identified six StSUS and four StSPS genes and analyzed their gene structure, conserved motifs, chromosome position, promoter elements, phylogenetic tree, and tissue-specific expression patterns. Our results will motivate more research into the biological process underlying the genes of sucrose metabolism in potatoes.
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Affiliation(s)
- Jun Hu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (J.H.)
- Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crop, Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Yanfeng Duan
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (J.H.)
- Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crop, Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Jinxue Hu
- Shijiazhuang Academy of Agriculture and Forestry Sciences, Shijiazhuang 050041, China
| | - Shuqing Zhang
- Shijiazhuang Academy of Agriculture and Forestry Sciences, Shijiazhuang 050041, China
| | - Guangcun Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (J.H.)
- Key Laboratory of Biology and Genetic Improvement of Tuber and Root Crop, Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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4
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Liu B, Wang T, Liu L, Xiao D, Yang Y, Yuan L, Zhang A, Xu K, Liu S, Liu K, Chen L. MYB6/bHLH13-AbSUS2 involved in sugar metabolism regulates root hair initiation of Abies beshanzuensis. THE NEW PHYTOLOGIST 2023; 240:2386-2403. [PMID: 37817383 DOI: 10.1111/nph.19301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 09/16/2023] [Indexed: 10/12/2023]
Abstract
Root hair is regarded as a pivotal complementary survival tactic for mycorrhizal plant like Abies beshanzuensis when symbiosis is disrupted. Relatively little is known about the mechanism underlying root hair morphogenesis in plant species that are strongly dependent on mycorrhizal symbiosis. Many of these species are endangered, and this knowledge is critical for ensuring their survival. Here, a MYB6/bHLH13-sucrose synthase 2 (AbSUS2) module was newly identified and characterized in A. beshanzuensis using bioinformatics, histochemistry, molecular biology, and transgenesis. Functional, expression pattern, and localization analysis showed that AbSUS2 participated in sucrose synthesis and was involved in root hair initiation in A. beshanzuensis. Additionally, the major enzymatic product of AbSUS2 was found to suppress root hair initiation in vitro. Our data further showed that a complex involving the transcription factors AbMYB6 and AbbHLH13 directly interacted with the promoter of AbSUS2 and strengthened its expression, thereby inhibiting root hair initiation in response to exogenous sucrose. Our findings offer novel insights into how root hair morphogenesis is regulated in mycorrhizal plants and also provide a new strategy for the preservation of endangered mycorrhizal plant species.
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Affiliation(s)
- Bin Liu
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Tingjin Wang
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Lingjuan Liu
- Longquan Preserve Center of Qianjiangyuan-Baishanzu National Park, Longquan, Zhejiang, 323714, China
| | - Duohong Xiao
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Yang Yang
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Lu Yuan
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Aijun Zhang
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Kexin Xu
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Shenglong Liu
- Longquan Preserve Center of Qianjiangyuan-Baishanzu National Park, Longquan, Zhejiang, 323714, China
| | - Ke Liu
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
| | - Liping Chen
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, 310058, China
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5
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Fox H, Ben-Dor S, Doron-Faigenboim A, Goldsmith M, Klein T, David-Schwartz R. Carbohydrate dynamics in Populus trees under drought: An expression atlas of genes related to sensing, translocation, and metabolism across organs. PHYSIOLOGIA PLANTARUM 2023; 175:e14001. [PMID: 37882295 DOI: 10.1111/ppl.14001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 07/24/2023] [Accepted: 08/07/2023] [Indexed: 10/27/2023]
Abstract
In trees, nonstructural carbohydrates (NSCs) serve as long-term carbon storage and long-distance carbon transport from source to sink. NSC management in response to drought stress is key to our understanding of drought acclimation. However, the molecular mechanisms underlying these processes remain unclear. By combining a transcriptomic approach with NSC quantification in the leaves, stems, and roots of Populus alba under drought stress, we analyzed genes from 29 gene families related to NSC signaling, translocation, and metabolism. We found starch depletion across organs and accumulation of soluble sugars (SS) in the leaves. Activation of the trehalose-6-phosphate/SNF1-related protein kinase (SnRK1) signaling pathway across organs via the suppression of class I TREHALOSE-PHOSPHATE SYNTHASE (TPS) and the expression of class II TPS genes suggested an active response to drought. The expression of SnRK1α and β subunits, and SUCROSE SYNTHASE6 supported SS accumulation in leaves. The upregulation of active transporters and the downregulation of most passive transporters implied a shift toward active sugar transport and enhanced regulation over partitioning. SS accumulation in vacuoles supports osmoregulation in leaves. The increased expression of sucrose synthesis genes and reduced expression of sucrose degradation genes in the roots did not coincide with sucrose levels, implying local sucrose production for energy. Moreover, the downregulation of invertases in the roots suggests limited sucrose allocation from the aboveground organs. This study provides an expression atlas of NSC-related genes that respond to drought in poplar trees, and can be tested in tree improvement programs for adaptation to drought conditions.
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Affiliation(s)
- Hagar Fox
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
- Institute of Plant Sciences, Agricultural Research Organization, Volcani Institute, Rishon LeZion, Israel
| | - Shifra Ben-Dor
- Department of Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Adi Doron-Faigenboim
- Institute of Plant Sciences, Agricultural Research Organization, Volcani Institute, Rishon LeZion, Israel
| | - Moshe Goldsmith
- Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Tamir Klein
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Rakefet David-Schwartz
- Institute of Plant Sciences, Agricultural Research Organization, Volcani Institute, Rishon LeZion, Israel
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6
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Derba-Maceluch M, Sivan P, Donev EN, Gandla ML, Yassin Z, Vaasan R, Heinonen E, Andersson S, Amini F, Scheepers G, Johansson U, Vilaplana FJ, Albrectsen BR, Hertzberg M, Jönsson LJ, Mellerowicz EJ. Impact of xylan on field productivity and wood saccharification properties in aspen. FRONTIERS IN PLANT SCIENCE 2023; 14:1218302. [PMID: 37528966 PMCID: PMC10389764 DOI: 10.3389/fpls.2023.1218302] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Accepted: 06/27/2023] [Indexed: 08/03/2023]
Abstract
Xylan that comprises roughly 25% of hardwood biomass is undesirable in biorefinery applications involving saccharification and fermentation. Efforts to reduce xylan levels have therefore been made in many species, usually resulting in improved saccharification. However, such modified plants have not yet been tested under field conditions. Here we evaluate the field performance of transgenic hybrid aspen lines with reduced xylan levels and assess their usefulness as short-rotation feedstocks for biorefineries. Three types of transgenic lines were tested in four-year field tests with RNAi constructs targeting either Populus GT43 clades B and C (GT43BC) corresponding to Arabidopsis clades IRX9 and IRX14, respectively, involved in xylan backbone biosynthesis, GATL1.1 corresponding to AtGALT1 involved in xylan reducing end sequence biosynthesis, or ASPR1 encoding an atypical aspartate protease. Their productivity, wood quality traits, and saccharification efficiency were analyzed. The only lines differing significantly from the wild type with respect to growth and biotic stress resistance were the ASPR1 lines, whose stems were roughly 10% shorter and narrower and leaves showed increased arthropod damage. GT43BC lines exhibited no growth advantage in the field despite their superior growth in greenhouse experiments. Wood from the ASPR1 and GT43BC lines had slightly reduced density due to thinner cell walls and, in the case of ASPR1, larger cell diameters. The xylan was less extractable by alkali but more hydrolysable by acid, had increased glucuronosylation, and its content was reduced in all three types of transgenic lines. The hemicellulose size distribution in the GALT1.1 and ASPR1 lines was skewed towards higher molecular mass compared to the wild type. These results provide experimental evidence that GATL1.1 functions in xylan biosynthesis and suggest that ASPR1 may regulate this process. In saccharification without pretreatment, lines of all three constructs provided 8-11% higher average glucose yields than wild-type plants. In saccharification with acid pretreatment, the GT43BC construct provided a 10% yield increase on average. The best transgenic lines of each construct are thus predicted to modestly outperform the wild type in terms of glucose yields per hectare. The field evaluation of transgenic xylan-reduced aspen represents an important step towards more productive feedstocks for biorefineries.
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Affiliation(s)
- Marta Derba-Maceluch
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Pramod Sivan
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
- Division of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, Stockholm, Sweden
| | - Evgeniy N. Donev
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
| | | | - Zakiya Yassin
- Enhet Produktionssystem och Material, RISE Research Institutes of Sweden, Växjö, Sweden
| | - Rakhesh Vaasan
- Division of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, Stockholm, Sweden
| | - Emilia Heinonen
- Division of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, Stockholm, Sweden
- Wallenberg Wood Science Centre (WWSC), KTH Royal Institute of Technology, Stockholm, Sweden
| | - Sanna Andersson
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Fariba Amini
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umea, Sweden
- Biology Department, Faculty of Science, Arak University, Arak, Iran
| | - Gerhard Scheepers
- Enhet Produktionssystem och Material, RISE Research Institutes of Sweden, Växjö, Sweden
| | - Ulf Johansson
- Tönnersjöheden Experimental Forest, Swedish University of Agricultural Sciences, Simlångsdalen, Sweden
| | - Francisco J. Vilaplana
- Division of Glycoscience, Department of Chemistry, KTH Royal Institute of Technology, AlbaNova University Centre, Stockholm, Sweden
- Wallenberg Wood Science Centre (WWSC), KTH Royal Institute of Technology, Stockholm, Sweden
| | | | | | | | - Ewa J. Mellerowicz
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
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7
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Donev EN, Derba‐Maceluch M, Yassin Z, Gandla ML, Pramod S, Heinonen E, Kumar V, Scheepers G, Vilaplana F, Johansson U, Hertzberg M, Sundberg B, Winestrand S, Hörnberg A, Alriksson B, Jönsson LJ, Mellerowicz EJ. Field testing of transgenic aspen from large greenhouse screening identifies unexpected winners. PLANT BIOTECHNOLOGY JOURNAL 2023; 21:1005-1021. [PMID: 36668687 PMCID: PMC10106850 DOI: 10.1111/pbi.14012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 11/30/2022] [Accepted: 12/29/2022] [Indexed: 05/04/2023]
Abstract
Trees constitute promising renewable feedstocks for biorefinery using biochemical conversion, but their recalcitrance restricts their attractiveness for the industry. To obtain trees with reduced recalcitrance, large-scale genetic engineering experiments were performed in hybrid aspen blindly targeting genes expressed during wood formation and 32 lines representing seven constructs were selected for characterization in the field. Here we report phenotypes of five-year old trees considering 49 traits related to growth and wood properties. The best performing construct considering growth and glucose yield in saccharification with acid pretreatment had suppressed expression of the gene encoding an uncharacterized 2-oxoglutarate-dependent dioxygenase (2OGD). It showed minor changes in wood chemistry but increased nanoporosity and glucose conversion. Suppressed levels of SUCROSE SYNTHASE, (SuSy), CINNAMATE 4-HYDROXYLASE (C4H) and increased levels of GTPase activating protein for ADP-ribosylation factor ZAC led to significant growth reductions and anatomical abnormalities. However, C4H and SuSy constructs greatly improved glucose yields in saccharification without and with pretreatment, respectively. Traits associated with high glucose yields were different for saccharification with and without pretreatment. While carbohydrates, phenolics and tension wood contents positively impacted the yields without pretreatment and growth, lignin content and S/G ratio were negative factors, the yields with pretreatment positively correlated with S lignin and negatively with carbohydrate contents. The genotypes with high glucose yields had increased nanoporosity and mGlcA/Xyl ratio, and some had shorter polymers extractable with subcritical water compared to wild-type. The pilot-scale industrial-like pretreatment of best-performing 2OGD construct confirmed its superior sugar yields, supporting our strategy.
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Affiliation(s)
- Evgeniy N. Donev
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesUmeåSweden
| | - Marta Derba‐Maceluch
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesUmeåSweden
| | - Zakiya Yassin
- Enhet Produktionssystem och MaterialRISE Research Institutes of SwedenVäxjöSweden
| | | | - Sivan Pramod
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesUmeåSweden
- Division of Glycoscience, Department of ChemistryKTH Royal Institute of Technology, AlbaNova University CentreStockholmSweden
| | - Emilia Heinonen
- Division of Glycoscience, Department of ChemistryKTH Royal Institute of Technology, AlbaNova University CentreStockholmSweden
- Wallenberg Wood Science Centre (WWSC)KTH Royal Institute of TechnologyStockholmSweden
| | - Vikash Kumar
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesUmeåSweden
| | - Gerhard Scheepers
- Enhet Produktionssystem och MaterialRISE Research Institutes of SwedenVäxjöSweden
| | - Francisco Vilaplana
- Division of Glycoscience, Department of ChemistryKTH Royal Institute of Technology, AlbaNova University CentreStockholmSweden
- Wallenberg Wood Science Centre (WWSC)KTH Royal Institute of TechnologyStockholmSweden
| | - Ulf Johansson
- Tönnersjöheden Experimental ForestSwedish University of Agricultural SciencesSimlångsdalenSweden
| | | | - Björn Sundberg
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesUmeåSweden
| | | | | | | | | | - Ewa J. Mellerowicz
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesUmeåSweden
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8
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Gong Z, Duan Y, Liu D, Zong Y, Zhang D, Shi X, Hao X, Li P. Physiological and transcriptome analysis of response of soybean (Glycine max) to cadmium stress under elevated CO 2 concentration. JOURNAL OF HAZARDOUS MATERIALS 2023; 448:130950. [PMID: 36860078 DOI: 10.1016/j.jhazmat.2023.130950] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 01/30/2023] [Accepted: 02/04/2023] [Indexed: 06/18/2023]
Abstract
The continuous accumulation of Cd has long-lasting detrimental effects on plant growth and food safety. Although elevated CO2 concentration (EC) has been reported to reduce Cd accumulation and toxicity in plants, evidence on the functions of elevated CO2 concentration and its mechanisms in the possible alleviation of Cd toxicity in soybean are limited. Here, we used physiological and biochemical methods together with transcriptomic comparison to explore the effects of EC on Cd-stressed soybean. Under Cd stress, EC significantly increased the weight of roots and leaves, promoted the accumulations of proline, soluble sugars, and flavonoid. In addition, the enhancement of GSH activity and GST gene expressions promoted Cd detoxification. These defensive mechanisms reduced the contents of Cd2+, MDA, and H2O2 in soybean leaves. The up-regulation of genes encoding phytochelatin synthase, MTPs, NRAMP, and vacuoles protein storage might play vital roles in the transportation and compartmentalization process of Cd. The MAPK and some transcription factors such as bHLH, AP2/ERF, and WRKY showed changed expressions and might be engaged in mediation of stress response. These findings provide a boarder view on the regulatory mechanism of EC on Cd stress and provide numerous potential target genes for future engineering of Cd-tolerant cultivars in soybean breeding programs under climate changes scenarios.
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Affiliation(s)
- Zehua Gong
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China; State Key Laboratory of Sustainable Dryland Agriculture, Shanxi Agricultural University, Taiyuan 030031, China
| | - Yuqian Duan
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China
| | - Danmei Liu
- School of Life Science, Shanxi University, 030036, Taiyuan, China
| | - Yuzheng Zong
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China
| | - Dongsheng Zhang
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China
| | - Xinrui Shi
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China
| | - Xingyu Hao
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China; State Key Laboratory of Sustainable Dryland Agriculture, Shanxi Agricultural University, Taiyuan 030031, China.
| | - Ping Li
- College of Agriculture, Shanxi Agricultural University, 030801 Taigu, China; State Key Laboratory of Sustainable Dryland Agriculture, Shanxi Agricultural University, Taiyuan 030031, China.
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9
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Gong X, Qi K, Chen J, Zhao L, Xie Z, Yan X, Khanizadeh S, Zhang S, Tao S. Multi-omics analyses reveal stone cell distribution pattern in pear fruit. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 113:626-642. [PMID: 36546867 DOI: 10.1111/tpj.16073] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Revised: 12/09/2022] [Accepted: 12/16/2022] [Indexed: 06/17/2023]
Abstract
Stone cells are the brachysclereid cells in pear (Pyrus) fruit, consisting almost entirely of lignified secondary cell walls. They are distributed mainly near the fruit core and spread radially in the whole fruit. However, the development of stone cells has not been comprehensively characterized, and little is known about the regulation of stone cell formation at the transcriptomic, proteomic, and metabolomic levels. In the present study, we performed phenomic analysis on the stone cells and their associated vascular bundles distributed near the fruit cores. Transcriptomic, proteomic, and metabolomic analyses revealed a significant positive regulation of biological processes which contribute to the lignification and lignin deposition in stone cells near the fruit core, including sucrose metabolism and phenylalanine, tyrosine, tryptophan, and phenylalanine biosynthesis. We found many metabolites generated from the phenylpropanoid pathway contributing to the cell wall formation of stone cells near the fruit core. Furthermore, we identified a key transcription factor, PbbZIP48, which was highly expressed near the fruit core and was shown to regulate lignin biosynthesis in stone cells. In conclusion, the present study provides insight into the mechanism of lignified stone cell formation near the pear fruit core at multiple levels.
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Affiliation(s)
- Xin Gong
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Kaijie Qi
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Juanli Chen
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Liangyi Zhao
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Zhihua Xie
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Xin Yan
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Shahrokh Khanizadeh
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Canada
| | - Shaoling Zhang
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China
| | - Shutian Tao
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China
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10
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Pedersen GB, Blaschek L, Frandsen KEH, Noack LC, Persson S. Cellulose synthesis in land plants. MOLECULAR PLANT 2023; 16:206-231. [PMID: 36564945 DOI: 10.1016/j.molp.2022.12.015] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Revised: 12/19/2022] [Accepted: 12/21/2022] [Indexed: 06/17/2023]
Abstract
All plant cells are surrounded by a cell wall that provides cohesion, protection, and a means of directional growth to plants. Cellulose microfibrils contribute the main biomechanical scaffold for most of these walls. The biosynthesis of cellulose, which typically is the most prominent constituent of the cell wall and therefore Earth's most abundant biopolymer, is finely attuned to developmental and environmental cues. Our understanding of the machinery that catalyzes and regulates cellulose biosynthesis has substantially improved due to recent technological advances in, for example, structural biology and microscopy. Here, we provide a comprehensive overview of the structure, function, and regulation of the cellulose synthesis machinery and its regulatory interactors. We aim to highlight important knowledge gaps in the field, and outline emerging approaches that promise a means to close those gaps.
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Affiliation(s)
- Gustav B Pedersen
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Leonard Blaschek
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Kristian E H Frandsen
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Lise C Noack
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Staffan Persson
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark; Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
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11
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Pottier D, Roitsch T, Persson S. Cell wall regulation by carbon allocation and sugar signaling. Cell Surf 2023. [DOI: 10.1016/j.tcsw.2023.100096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
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12
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Tang Y, Schiestl-Aalto P, Saurer M, Sahlstedt E, Kulmala L, Kolari P, Ryhti K, Salmon Y, Jyske T, Ding Y, Bäck J, Rinne-Garmston KT. Tree organ growth and carbon allocation dynamics impact the magnitude and δ13C signal of stem and soil CO2 fluxes. TREE PHYSIOLOGY 2022; 42:2404-2418. [PMID: 35849053 PMCID: PMC10101690 DOI: 10.1093/treephys/tpac079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 06/08/2022] [Accepted: 07/02/2022] [Indexed: 05/14/2023]
Abstract
Incomplete knowledge of carbon (C) allocation dynamics in trees hinders accurate modeling and future predictions of tree growth. We studied C allocation dynamics in a mature Pinus sylvestris L. dominated forest with a novel analytical approach, allowing the first comparison of: (i) magnitude and δ13C of shoot, stem and soil CO2 fluxes (Ashoot, Rstem and Rsoil), (ii) concentration and δ13C of compound-specific and/or bulk non-structural carbohydrates (NSCs) in phloem and roots and (iii) growth of stem and fine roots. Results showed a significant effect of phloem NSC concentrations on tracheid growth, and both variables significantly impacted Rstem. Also, concentrations of root NSCs, especially starch, had a significant effect on fine root growth, although no effect of root NSC concentrations or root growth was detected on Rsoil. Time series analysis between δ13C of Ashoot and δ13C of Rstem or δ13C of Rsoil revealed strengthened C allocation to stem or roots under high C demands. Furthermore, we detected a significant correlation between δ13C of Rstem and δ13C of phloem sucrose and glucose, but not for starch or water-soluble carbohydrates. Our results indicate the need to include C allocation dynamics into tree growth models. We recommend using compound-specific concentration and δ13C analysis to reveal C allocation processes that may not be detected by the conventional approach that utilizes bulk organic matter.
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Affiliation(s)
| | - Pauliina Schiestl-Aalto
- Institute for Atmospheric and Earth System Research
(INAR)/Physics, Faculty of Science, University of
Helsinki, P.O. Box 68, FI-00014 Helsinki, Finland
| | - Matthias Saurer
- Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape
Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Elina Sahlstedt
- Bioeconomy and Environment Unit, Natural Resources Institute
Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland
| | - Liisa Kulmala
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
- Finnish Meteorological Institute, P.O. Box 503, FI-00101
Helsinki, Finland
| | - Pasi Kolari
- Institute for Atmospheric and Earth System Research
(INAR)/Physics, Faculty of Science, University of
Helsinki, P.O. Box 68, FI-00014 Helsinki, Finland
| | - Kira Ryhti
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
| | - Yann Salmon
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
- Institute for Atmospheric and Earth System Research
(INAR)/Physics, Faculty of Science, University of
Helsinki, P.O. Box 68, FI-00014 Helsinki, Finland
| | - Tuula Jyske
- Production Systems Unit, Natural Resources Institute Finland,
Tietotie 2, FI-02150 Espoo, Finland
| | - Yiyang Ding
- Department of Forest Sciences, Faculty of Agriculture and
Forestry, University of Helsinki, P.O. Box 27, FI-00014
Helsinki, Finland
| | - Jaana Bäck
- Institute for Atmospheric and Earth System Research (INAR)/Forest
Sciences, Faculty of Agriculture and Forestry, University
of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
| | - Katja T Rinne-Garmston
- Bioeconomy and Environment Unit, Natural Resources Institute
Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland
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13
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Patono DL, Said‐Pullicino D, Eloi Alcatrāo L, Firbus A, Ivaldi G, Chitarra W, Ferrandino A, Ricauda Aimonino D, Celi L, Gambino G, Perrone I, Lovisolo C. Photosynthetic recovery in drought-rehydrated grapevines is associated with high demand from the sinks, maximizing the fruit-oriented performance. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 112:1098-1111. [PMID: 36209488 PMCID: PMC9828513 DOI: 10.1111/tpj.16000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 08/20/2022] [Accepted: 10/05/2022] [Indexed: 05/08/2023]
Abstract
To understand how grapevine sinks compete with each other during water stress and subsequent rehydration, carbon (C) allocation patterns in drought-rehydrated vines (REC) at the beginning of fruit ripening were compared with control vines maintained under drought (WS) or fully irrigated (WW). In the 30 days following rehydration, the quantity and distribution of newly fixed C between leaves, roots and fruits was evaluated through 13 CO2 pulse-labeling and stable isotope ratio mass spectrometry. REC plants diverted the same percentage of fixed C towards the berries as the WS plants, although the percentage was higher than that of WW plants. Net photosynthesis (measured simultaneously with root respiration in a multichamber system for analysis of gas exchange above- and below-ground) was approximately two-fold greater in REC compared to WS treatment, and comparable or even higher than in WW plants. Maximizing C assimilation and delivery in REC plants led to a significantly higher amount of newly fixed C compared to both control treatments, already 2 days after rehydration in root, and 2 days later in the berries, in line with the expression of genes responsible for sugar metabolism. In REC plants, the increase in C assimilation was able to support the requests of the sinks during fruit ripening, without affecting the reserves, as was the case in WS. These mechanisms clarify what is experienced in fruit crops, when occasional rain or irrigation events are more effective in determining sugar delivery towards fruits, rather than constant and satisfactory water availabilities.
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Affiliation(s)
- Davide L. Patono
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | - Daniel Said‐Pullicino
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | - Leandro Eloi Alcatrāo
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | - Andrea Firbus
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | - Giorgio Ivaldi
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | - Walter Chitarra
- Institute for Sustainable Plant ProtectionNational Research CouncilTurinItaly
- Council for Agricultural Research and Economics‐Research Centre for Viticulture and Enology (CREA‐VE)ConeglianoItaly
| | - Alessandra Ferrandino
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | | | - Luisella Celi
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
| | - Giorgio Gambino
- Institute for Sustainable Plant ProtectionNational Research CouncilTurinItaly
| | - Irene Perrone
- Institute for Sustainable Plant ProtectionNational Research CouncilTurinItaly
| | - Claudio Lovisolo
- Department of Agricultural, Forest and Food SciencesUniversity of TurinGrugliascoItaly
- Institute for Sustainable Plant ProtectionNational Research CouncilTurinItaly
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Wang W, Talide L, Viljamaa S, Niittylä T. Aspen growth is not limited by starch reserves. Curr Biol 2022; 32:3619-3627.e4. [PMID: 35820419 DOI: 10.1016/j.cub.2022.06.056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 04/13/2022] [Accepted: 06/16/2022] [Indexed: 11/16/2022]
Abstract
All photosynthetic organisms balance CO2 assimilation with growth and carbon storage. Stored carbon is used for growth at night and when demand exceeds assimilation. Gaining a mechanistic understanding of carbon partitioning between storage and growth in trees is important for biological studies and for estimating the potential of terrestrial photosynthesis to sequester anthropogenic CO2 emissions.1,2 Starch represents the main carbon storage in plants.3,4 To examine the carbon storage mechanism and role of starch during tree growth, we generated and characterized low-starch hybrid aspen (Populus tremula × tremuloides) trees using CRISPR-Cas9-mediated gene editing of two PHOSPHOGLUCOMUTASE (PGM) genes coding for plastidial PGM isoforms essential for starch biosynthesis. We demonstrate that starch deficiency does not reduce tree growth even in short days, showing that starch is not a critical carbon reserve during diel growth of aspen. The low-starch trees assimilated up to ∼30% less CO2 compared to the wild type under a range of irradiance levels, but this did not reduce growth or wood density. This implies that aspen growth is not limited by carbon assimilation under benign growth conditions. Moreover, the timing of bud set and bud flush in the low-starch trees was not altered, implying that starch reserves are not critical for the seasonal growth-dormancy cycle. The findings are consistent with a passive starch storage mechanism that contrasts with the annual Arabidopsis and indicate that the capacity of the aspen to absorb CO2 is limited by the rate of sink tissue growth.
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Affiliation(s)
- Wei Wang
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, Umeå S-901 83, Sweden
| | - Loic Talide
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, Umeå S-901 83, Sweden
| | - Sonja Viljamaa
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, Umeå S-901 83, Sweden
| | - Totte Niittylä
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, Umeå S-901 83, Sweden.
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15
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Wang W, Viljamaa S, Hodek O, Moritz T, Niittylä T. Sucrose synthase activity is not required for cellulose biosynthesis in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 110:1493-1497. [PMID: 35362151 PMCID: PMC9322421 DOI: 10.1111/tpj.15752] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/22/2022] [Indexed: 05/13/2023]
Abstract
Biosynthesis of plant cell walls requires UDP-glucose as the substrate for cellulose biosynthesis, and as an intermediate for the synthesis of other matrix polysaccharides. The sucrose cleaving enzyme sucrose synthase (SUS) is thought to have a central role in UDP-glucose biosynthesis, and a long-held and much debated hypothesis postulates that SUS is required to supply UDP-glucose to cellulose biosynthesis. To investigate the role of SUS in cellulose biosynthesis of Arabidopsis thaliana we characterized mutants in which four or all six Arabidopsis SUS genes were disrupted. These sus mutants showed no growth phenotypes, vascular tissue cell wall defects, or changes in cellulose content. Moreover, the UDP-glucose content of rosette leaves of the sextuple sus mutants was increased by approximately 20% compared with wild type. It can thus be concluded that cellulose biosynthesis is able to employ alternative UDP-glucose biosynthesis pathway(s), and thereby the model of SUS requirements for cellulose biosynthesis in Arabidopsis can be refuted.
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Affiliation(s)
- Wei Wang
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesSE 901 83UmeåSweden
| | - Sonja Viljamaa
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesSE 901 83UmeåSweden
| | - Ondrej Hodek
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesSE 901 83UmeåSweden
| | - Thomas Moritz
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesSE 901 83UmeåSweden
- Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Basic Metabolic ResearchUniversity of CopenhagenCopenhagenDenmark
| | - Totte Niittylä
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science CentreSwedish University of Agricultural SciencesSE 901 83UmeåSweden
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16
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Dominguez PG, Niittylä T. Mobile forms of carbon in trees: metabolism and transport. TREE PHYSIOLOGY 2022; 42:458-487. [PMID: 34542151 PMCID: PMC8919412 DOI: 10.1093/treephys/tpab123] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 07/16/2021] [Accepted: 09/12/2021] [Indexed: 05/26/2023]
Abstract
Plants constitute 80% of the biomass on earth, and almost two-thirds of this biomass is found in wood. Wood formation is a carbon (C)-demanding process and relies on C transport from photosynthetic tissues. Thus, understanding the transport process is of major interest for understanding terrestrial biomass formation. Here, we review the molecules and mechanisms used to transport and allocate C in trees. Sucrose is the major form in which C is transported in plants, and it is found in the phloem sap of all tree species investigated so far. However, in several tree species, sucrose is accompanied by other molecules, notably polyols and the raffinose family of oligosaccharides. We describe the molecules that constitute each of these transport groups, and their distribution across different tree species. Furthermore, we detail the metabolic reactions for their synthesis, the mechanisms by which trees load and unload these compounds in and out of the vascular system, and how they are radially transported in the trunk and finally catabolized during wood formation. We also address a particular C recirculation process between phloem and xylem that occurs in trees during the annual cycle of growth and dormancy. A search of possible evolutionary drivers behind the diversity of C-carrying molecules in trees reveals no consistent differences in C transport mechanisms between angiosperm and gymnosperm trees. Furthermore, the distribution of C forms across species suggests that climate-related environmental factors will not explain the diversity of C transport forms. However, the consideration of C-transport mechanisms in relation to tree-rhizosphere coevolution deserves further attention. To conclude the review, we identify possible future lines of research in this field.
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Affiliation(s)
- Pia Guadalupe Dominguez
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires B1686IGC, Argentina
| | - Totte Niittylä
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå 90183, Sweden
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17
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Liu L, Zheng J. Identification and expression analysis of the sucrose synthase gene family in pomegranate ( Punica granatum L.). PeerJ 2022; 10:e12814. [PMID: 35047243 PMCID: PMC8757371 DOI: 10.7717/peerj.12814] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Accepted: 12/29/2021] [Indexed: 01/12/2023] Open
Abstract
BACKGROUND Sucrose synthase (SUS, EC 2.4.1.13) is one of the major enzymes of sucrose metabolism in higher plants. It has been associated with C allocation, biomass accumulation, and sink strength. The SUS gene families have been broadly explored and characterized in a number of plants. The pomegranate (Punica granatum) genome is known, however, it lacks a comprehensive study on its SUS genes family. METHODS PgSUS genes were identified from the pomegranate genome using a genome-wide search method. The PgSUS gene family was comprehensively analyzed by physicochemical properties, evolutionary relationship, gene structure, conserved motifs and domains, protein structure, syntenic relationships, and cis-acting elements using bioinformatics methods. The expression pattern of the PgSUS gene in different organs and fruit development stages were assayed with RNA-seq obtained from the NCBI SRA database as well as real-time quantitative polymerase chain reaction (qPCR). RESULTS Five pomegranate SUS genes, located on four different chromosomes, were divided into three subgroupsaccording to the classification of other seven species. The PgSUS family was found to be highly conserved during evolution after studying the gene structure, motifs, and domain analysis. Furthermore, the predicted PgSUS proteins showed similar secondary and tertiary structures. Syntenic analysis demonstrated that four PgSUS genes showed syntenic relationships with four species, with the exception of PgSUS2. Predictive promoter analysis indicated that PgSUS genes may be responsive to light, hormone signaling, and stress stimulation. RNA-seq analysis revealed that PgSUS1/3/4 were highly expressed in sink organs, including the root, flower, and fruit, and particularly in the outer seed coats. qPCR analysis showed also that PgSUS1, PgSUS3, and PgSUS4 were remarkably expressed during fruit seed coat development. Our results provide a systematic overview of the PgSUS gene family in pomegranate, developing the framework for further research and use of functional PgSUS genes.
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Affiliation(s)
- Longbo Liu
- School of Life Science, Huaibei Normal University, Huaibei, Anhui, China
| | - Jie Zheng
- School of Life Science, Huaibei Normal University, Huaibei, Anhui, China
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18
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Yang X, Liu D, Lu H, Weston DJ, Chen JG, Muchero W, Martin S, Liu Y, Hassan MM, Yuan G, Kalluri UC, Tschaplinski TJ, Mitchell JC, Wullschleger SD, Tuskan GA. Biological Parts for Plant Biodesign to Enhance Land-Based Carbon Dioxide Removal. BIODESIGN RESEARCH 2021; 2021:9798714. [PMID: 37849951 PMCID: PMC10521660 DOI: 10.34133/2021/9798714] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Accepted: 11/07/2021] [Indexed: 10/19/2023] Open
Abstract
A grand challenge facing society is climate change caused mainly by rising CO2 concentration in Earth's atmosphere. Terrestrial plants are linchpins in global carbon cycling, with a unique capability of capturing CO2 via photosynthesis and translocating captured carbon to stems, roots, and soils for long-term storage. However, many researchers postulate that existing land plants cannot meet the ambitious requirement for CO2 removal to mitigate climate change in the future due to low photosynthetic efficiency, limited carbon allocation for long-term storage, and low suitability for the bioeconomy. To address these limitations, there is an urgent need for genetic improvement of existing plants or construction of novel plant systems through biosystems design (or biodesign). Here, we summarize validated biological parts (e.g., protein-encoding genes and noncoding RNAs) for biological engineering of carbon dioxide removal (CDR) traits in terrestrial plants to accelerate land-based decarbonization in bioenergy plantations and agricultural settings and promote a vibrant bioeconomy. Specifically, we first summarize the framework of plant-based CDR (e.g., CO2 capture, translocation, storage, and conversion to value-added products). Then, we highlight some representative biological parts, with experimental evidence, in this framework. Finally, we discuss challenges and strategies for the identification and curation of biological parts for CDR engineering in plants.
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Affiliation(s)
- Xiaohan Yang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Degao Liu
- Department of Genetics, Cell Biology and Development, Center for Precision Plant Genomics, and Center for Genome Engineering, University of Minnesota, Saint Paul, MN 55108, USA
| | - Haiwei Lu
- Department of Academic Education, Central Community College-Hastings, Hastings, NE 68902USA
| | - David J. Weston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Stanton Martin
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Yang Liu
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Md Mahmudul Hassan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Guoliang Yuan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Udaya C. Kalluri
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Timothy J. Tschaplinski
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Julie C. Mitchell
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Stan D. Wullschleger
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Gerald A. Tuskan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
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19
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Gessler A. Sucrose synthase - an enzyme with a central role in the source-sink coordination and carbon flow in trees. THE NEW PHYTOLOGIST 2021; 229:8-10. [PMID: 33152141 DOI: 10.1111/nph.16998] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Affiliation(s)
- Arthur Gessler
- Ecosystem Ecology, Swiss Federal Research Institute WSL, Zürcherstr. 111, Birmensdorf, 8903, Switzerland
- Department of Environmental Systems Science, Institute of Terrestrial Ecosystems, ETH Zurich, Universitätstrasse 16, Zurich, 8092, Switzerland
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