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Zhang J, Chen X, Song Y, Gong Z. Integrative regulatory mechanisms of stomatal movements under changing climate. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024; 66:368-393. [PMID: 38319001 DOI: 10.1111/jipb.13611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 01/04/2024] [Indexed: 02/07/2024]
Abstract
Global climate change-caused drought stress, high temperatures and other extreme weather profoundly impact plant growth and development, restricting sustainable crop production. To cope with various environmental stimuli, plants can optimize the opening and closing of stomata to balance CO2 uptake for photosynthesis and water loss from leaves. Guard cells perceive and integrate various signals to adjust stomatal pores through turgor pressure regulation. Molecular mechanisms and signaling networks underlying the stomatal movements in response to environmental stresses have been extensively studied and elucidated. This review focuses on the molecular mechanisms of stomatal movements mediated by abscisic acid, light, CO2 , reactive oxygen species, pathogens, temperature, and other phytohormones. We discussed the significance of elucidating the integrative mechanisms that regulate stomatal movements in helping design smart crops with enhanced water use efficiency and resilience in a climate-changing world.
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Affiliation(s)
- Jingbo Zhang
- State Key Laboratory of Nutrient Use and Management, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Beijing, 100193, China
| | - Xuexue Chen
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yajing Song
- State Key Laboratory of Nutrient Use and Management, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Beijing, 100193, China
| | - Zhizhong Gong
- State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, 100094, China
- Institute of Life Science and Green Development, School of Life Sciences, Hebei University, Baoding, 071001, China
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2
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Huang Y, Swarge BN, Roseboom W, Bleeker JD, Brul S, Setlow P, Kramer G. Integrative Metabolomics and Proteomics Allow the Global Intracellular Characterization of Bacillus subtilis Cells and Spores. J Proteome Res 2024; 23:596-608. [PMID: 38190553 PMCID: PMC10845140 DOI: 10.1021/acs.jproteome.3c00386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 12/01/2023] [Accepted: 12/08/2023] [Indexed: 01/10/2024]
Abstract
Reliable and comprehensive multi-omics analysis is essential for researchers to understand and explore complex biological systems more completely. Bacillus subtilis (B. subtilis) is a model organism for Gram-positive spore-forming bacteria, and in-depth insight into the physiology and molecular basis of spore formation and germination in this organism requires advanced multilayer molecular data sets generated from the same sample. In this study, we evaluated two monophasic methods for polar and nonpolar compound extraction (acetonitrile/methanol/water; isopropanol/water, and 60% ethanol) and two biphasic methods (chloroform/methanol/water, and methyl tert-butyl ether/methanol/water) on coefficients of variation of analytes, identified metabolite composition, and the quality of proteomics profiles. The 60% EtOH protocol proved to be the easiest in sample processing and was more amenable to automation. Collectively, we annotated 505 and 484 metabolites and identified 1665 and 1562 proteins in B. subtilis vegetative cells and spores, respectively. We also show differences between vegetative cells and spores from a multi-omics perspective and demonstrate that an integrative multi-omics analysis can be implemented from one sample using the 60% EtOH protocol. The results obtained by the 60% EtOH protocol provide comprehensive insight into differences in the metabolic and protein makeup of B. subtilis vegetative cells and spores.
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Affiliation(s)
- Yixuan Huang
- Laboratory
for Mass Spectrometry of Biomolecules, Swammerdam Institute for Life
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
- Molecular
Biology and Microbial Food Safety, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Bhagyashree N. Swarge
- Laboratory
for Mass Spectrometry of Biomolecules, Swammerdam Institute for Life
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
- Molecular
Biology and Microbial Food Safety, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Winfried Roseboom
- Laboratory
for Mass Spectrometry of Biomolecules, Swammerdam Institute for Life
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Jurre D. Bleeker
- Laboratory
for Mass Spectrometry of Biomolecules, Swammerdam Institute for Life
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Stanley Brul
- Molecular
Biology and Microbial Food Safety, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Peter Setlow
- Department
of Molecular Biology and Biophysics, UConn
Health, Farmington, Connecticut 06030-3305, United States
| | - Gertjan Kramer
- Laboratory
for Mass Spectrometry of Biomolecules, Swammerdam Institute for Life
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
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3
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Truong TTT, Chiu CC, Chen JY, Su PY, Nguyen TP, Trinh NN, Mimura T, Lee RH, Chang CH, Huang HJ. Uncovering molecular mechanisms involved in microbial volatile compounds-induced stomatal closure in Arabidopsis thaliana. PLANT MOLECULAR BIOLOGY 2023; 113:143-155. [PMID: 37985583 DOI: 10.1007/s11103-023-01379-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 09/18/2023] [Indexed: 11/22/2023]
Abstract
Microbial volatile compounds (mVCs) may cause stomatal closure to limit pathogen invasion as part of plant innate immune response. However, the mechanisms of mVC-induced stomatal closure remain unclear. In this study, we co-cultured Enterobacter aerogenes with Arabidopsis (Arabidopsis thaliana) seedlings without direct contact to initiate stomatal closure. Experiments using the reactive oxygen species (ROS)-sensitive fluorescent dye, H2DCF-DA, showed that mVCs from E. aerogenes enhanced ROS production in guard cells of wild-type plants. The involvement of ROS in stomatal closure was then demonstrated in an ROS production mutant (rbohD). In addition, we identified two stages of signal transduction during E. aerogenes VC-induced stomatal closure by comparing the response of wild-type Arabidopsis with a panel of mutants. In the early stage (3 h exposure), E. aerogenes VCs induced stomatal closure in wild-type and receptor-like kinase THESEUS1 mutant (the1-1) but not in rbohD, plant hormone-related mutants (nced3, erf4, jar1-1), or MAPK kinase mutants (mkk1 and mkk3). However, in the late stage (24 h exposure), E. aerogenes VCs induced stomatal closure in wild-type and rbohD but not in nced3, erf4, jar1-1, the1-1, mkk1 or mkk3. Taken together, our results suggest that E. aerogenes mVC-induced plant immune responses modulate stomatal closure in Arabidopsis by a multi-phase mechanism.
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Affiliation(s)
- Tu-Trinh Thi Truong
- Department of Life Sciences, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan
- Faculty of Technology, The University of Danang-Campus in Kontum, The University of Danang, Kon Tum City, 580000, Vietnam
| | - Chi-Chou Chiu
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan
| | - Jing-Yu Chen
- Department of Life Sciences, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan
| | - Pei-Yu Su
- Department of Life Sciences, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan
| | - Tri-Phuong Nguyen
- Department of Life Sciences, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan
| | - Ngoc-Nam Trinh
- Industrial University of Ho Chi Minh City, No. 12, Nguyen Van Bao, Ho Chi Minh City, Vietnam
| | - Tetsuro Mimura
- Kyoto University of Advanced Science, Kameoka, Kyoto, 621-8555, Japan
| | - Ruey-Hua Lee
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan
| | - Ching-Han Chang
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, No. 1, University Road, Tainan, 701, Taiwan
| | - Hao-Jen Huang
- Department of Life Sciences, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan.
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, No. 1, University Road, Tainan, 701, Taiwan.
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, No. 1, University Road, Tainan, 701, Taiwan.
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4
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Jiang L, Liu S, Hu X, Li D, Chen L, Weng X, Zheng Z, Chen X, Zhuang J, Li X, Chen Z, Yuan M. The Impact of Photosynthetic Characteristics and Metabolomics on the Fatty Acid Biosynthesis in Tea Seeds. Foods 2023; 12:3821. [PMID: 37893714 PMCID: PMC10606020 DOI: 10.3390/foods12203821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 10/09/2023] [Accepted: 10/12/2023] [Indexed: 10/29/2023] Open
Abstract
The synthesis of tea fatty acids plays a crucial role in determining the oil content of tea seeds and selecting tea tree varieties suitable for harvesting both leaves and fruits. However, there is limited research on fatty acid synthesis in tea trees, and the precise mechanisms influencing tea seed oil content remain elusive. To reveal the fatty acid biosynthesis mechanism, we conducted a photosynthetic characteristic and targeted metabolomics analysis in comparison between Jincha 2 and Wuniuzao cultivars. Our findings revealed that Jincha 2 exhibited significantly higher net photosynthetic rates (Pn), stomatal conductance (Gs), and transpiration rate (Tr) compared with Wuniuzao, indicating the superior photosynthetic capabilities of Jincha 2. Totally, we identified 94 metabolites with significant changes, including key hormone regulators such as gibberellin A1 (GA1) and indole 3-acetic acid (IAA). Additionally, linolenic acid, methyl dihydrojasmonate, and methylthiobutyric acid, precursors required for fatty acid synthesis, were significantly more abundant in Jincha 2 compared with Wuniuzao. In summary, our research suggests that photosynthetic rates and metabolites contribute to the increased yield, fatty acid synthesis, and oil content observed in Jincha 2 when compared with Wuniuzao.
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Affiliation(s)
- Li Jiang
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
| | - Shujing Liu
- International Institute of Tea Industry Innovation for the Belt and Road, Nanjing Agricultural University, Nanjing 210095, China; (X.C.); (J.Z.); (X.L.)
| | - Xinrong Hu
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
| | - Duojiao Li
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
| | - Le Chen
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
| | - Xiaoxing Weng
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
| | - Zhaisheng Zheng
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
| | - Xuan Chen
- International Institute of Tea Industry Innovation for the Belt and Road, Nanjing Agricultural University, Nanjing 210095, China; (X.C.); (J.Z.); (X.L.)
| | - Jing Zhuang
- International Institute of Tea Industry Innovation for the Belt and Road, Nanjing Agricultural University, Nanjing 210095, China; (X.C.); (J.Z.); (X.L.)
| | - Xinghui Li
- International Institute of Tea Industry Innovation for the Belt and Road, Nanjing Agricultural University, Nanjing 210095, China; (X.C.); (J.Z.); (X.L.)
| | - Zhengdao Chen
- Zhejiang Cultivated Land Quality and Fertilizer Management Station, Hangzhou 310020, China;
| | - Mingan Yuan
- Jinhua Academy of Agricultural Sciences, Jinhua 321017, China; (L.J.); (X.H.); (D.L.); (L.C.); (X.W.); (Z.Z.)
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5
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Wang H, Wang Y, Sang T, Lin Z, Li R, Ren W, Shen X, Zhao B, Wang X, Zhang X, Zhou S, Dai S, Hu H, Song CP, Wang P. Cell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2023; 65:2122-2137. [PMID: 37226855 DOI: 10.1111/jipb.13536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 05/16/2023] [Accepted: 05/23/2023] [Indexed: 05/26/2023]
Abstract
Multicellular organisms such as plants contain various cell types with specialized functions. Analyzing the characteristics of each cell type reveals specific cell functions and enhances our understanding of organization and function at the organismal level. Guard cells (GCs) are specialized epidermal cells that regulate the movement of the stomata and gaseous exchange, and provide a model genetic system for analyzing cell fate, signaling, and function. Several proteomics analyses of GC are available, but these are limited in depth. Here we used enzymatic isolation and flow cytometry to enrich GC and mesophyll cell protoplasts and perform in-depth proteomics in these two major cell types in Arabidopsis leaves. We identified approximately 3,000 proteins not previously found in the GC proteome and more than 600 proteins that may be specific to GC. The depth of our proteomics enabled us to uncover a guard cell-specific kinase cascade whereby Raf15 and Snf1-related kinase2.6 (SnRK2.6)/OST1(open stomata 1) mediate abscisic acid (ABA)-induced stomatal closure. RAF15 directly phosphorylated SnRK2.6/OST1 at the conserved Ser175 residue in its activation loop and was sufficient to reactivate the inactive form of SnRK2.6/OST1. ABA-triggered SnRK2.6/OST1 activation and stomatal closure was impaired in raf15 mutants. We also showed enrichment of enzymes and flavone metabolism in GC, and consistent, dramatic accumulation of flavone metabolites. Our study answers the long-standing question of how ABA activates SnRK2.6/OST1 in GCs and represents a resource potentially providing further insights into the molecular basis of GC and mesophyll cell development, metabolism, structure, and function.
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Affiliation(s)
- Hongliang Wang
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Yubei Wang
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Tian Sang
- Institute of Advanced Biotechnology and School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055, China
| | - Zhen Lin
- Institute of Advanced Biotechnology and School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055, China
| | - Rongxia Li
- Shanghai Bioprofile Technology Company Ltd, Shanghai, 200241, China
| | - Weiwei Ren
- Center of Plant Germplasm Resources, College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China
| | - Xin Shen
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Bing Zhao
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Life Sciences, College of Agriculture, Academy for Advanced Interdisciplinary Studies, Henan University, Kaifeng, 475004, China
| | - Xiao Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Life Sciences, College of Agriculture, Academy for Advanced Interdisciplinary Studies, Henan University, Kaifeng, 475004, China
| | - Xuebin Zhang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Life Sciences, College of Agriculture, Academy for Advanced Interdisciplinary Studies, Henan University, Kaifeng, 475004, China
| | - Shaoqun Zhou
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Shaojun Dai
- Center of Plant Germplasm Resources, College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China
| | - Honghong Hu
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Chun-Peng Song
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Life Sciences, College of Agriculture, Academy for Advanced Interdisciplinary Studies, Henan University, Kaifeng, 475004, China
| | - Pengcheng Wang
- Institute of Advanced Biotechnology and School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055, China
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6
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Daloso DDM, Morais EG, Oliveira E Silva KF, Williams TCR. Cell-type-specific metabolism in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 114:1093-1114. [PMID: 36987968 DOI: 10.1111/tpj.16214] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 03/20/2023] [Accepted: 03/25/2023] [Indexed: 05/31/2023]
Abstract
Every plant organ contains tens of different cell types, each with a specialized function. These functions are intrinsically associated with specific metabolic flux distributions that permit the synthesis of the ATP, reducing equivalents and biosynthetic precursors demanded by the cell. Investigating such cell-type-specific metabolism is complicated by the mosaic of different cells within each tissue combined with the relative scarcity of certain types. However, techniques for the isolation of specific cells, their analysis in situ by microscopy, or modeling of their function in silico have permitted insight into cell-type-specific metabolism. In this review we present some of the methods used in the analysis of cell-type-specific metabolism before describing what we know about metabolism in several cell types that have been studied in depth; (i) leaf source and sink cells; (ii) glandular trichomes that are capable of rapid synthesis of specialized metabolites; (iii) guard cells that must accumulate large quantities of the osmolytes needed for stomatal opening; (iv) cells of seeds involved in storage of reserves; and (v) the mesophyll and bundle sheath cells of C4 plants that participate in a CO2 concentrating cycle. Metabolism is discussed in terms of its principal features, connection to cell function and what factors affect the flux distribution. Demand for precursors and energy, availability of substrates and suppression of deleterious processes are identified as key factors in shaping cell-type-specific metabolism.
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Affiliation(s)
- Danilo de Menezes Daloso
- Lab Plant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CA, 60451-970, Brazil
| | - Eva Gomes Morais
- Lab Plant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CA, 60451-970, Brazil
| | - Karen Fernanda Oliveira E Silva
- Departamento de Botânica, Instituto de Ciências Biológicas, Universidade de Brasília, Asa Norte, Brasília-DF, 70910-900, Brazil
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7
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Azoulay-Shemer T, Schulze S, Nissan-Roda D, Bosmans K, Shapira O, Weckwerth P, Zamora O, Yarmolinsky D, Trainin T, Kollist H, Huffaker A, Rappel WJ, Schroeder JI. A role for ethylene signaling and biosynthesis in regulating and accelerating CO 2 - and abscisic acid-mediated stomatal movements in Arabidopsis. THE NEW PHYTOLOGIST 2023; 238:2460-2475. [PMID: 36994603 PMCID: PMC10259821 DOI: 10.1111/nph.18918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 03/05/2023] [Indexed: 05/19/2023]
Abstract
Little is known about long-distance mesophyll-driven signals that regulate stomatal conductance. Soluble and/or vapor-phase molecules have been proposed. In this study, the involvement of the gaseous signal ethylene in the modulation of stomatal conductance in Arabidopsis thaliana by CO2 /abscisic acid (ABA) was examined. We present a diffusion model which indicates that gaseous signaling molecule/s with a shorter/direct diffusion pathway to guard cells are more probable for rapid mesophyll-dependent stomatal conductance changes. We, therefore, analyzed different Arabidopsis ethylene-signaling and biosynthesis mutants for their ethylene production and kinetics of stomatal responses to ABA/[CO2 ]-shifts. According to our research, higher [CO2 ] causes Arabidopsis rosettes to produce more ethylene. An ACC-synthase octuple mutant with reduced ethylene biosynthesis exhibits dysfunctional CO2 -induced stomatal movements. Ethylene-insensitive receptor (gain-of-function), etr1-1 and etr2-1, and signaling, ein2-5 and ein2-1, mutants showed intact stomatal responses to [CO2 ]-shifts, whereas loss-of-function ethylene receptor mutants, including etr2-3;ein4-4;ers2-3, etr1-6;etr2-3 and etr1-6, showed markedly accelerated stomatal responses to [CO2 ]-shifts. Further investigation revealed a significantly impaired stomatal closure to ABA in the ACC-synthase octuple mutant and accelerated stomatal responses in the etr1-6;etr2-3, and etr1-6, but not in the etr2-3;ein4-4;ers2-3 mutants. These findings suggest essential functions of ethylene biosynthesis and signaling components in tuning/accelerating stomatal conductance responses to CO2 and ABA.
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Affiliation(s)
- Tamar Azoulay-Shemer
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093-0116, USA
- Fruit Tree Sciences, Agricultural Research Organization (ARO), The Volcani Center, Newe Ya’ar Research Center, Ramat Yishay, 30095, Israel
| | - Sebastian Schulze
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Dikla Nissan-Roda
- Fruit Tree Sciences, Agricultural Research Organization (ARO), The Volcani Center, Newe Ya’ar Research Center, Ramat Yishay, 30095, Israel
| | - Krystal Bosmans
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Or Shapira
- Fruit Tree Sciences, Agricultural Research Organization (ARO), The Volcani Center, Newe Ya’ar Research Center, Ramat Yishay, 30095, Israel
| | - Philipp Weckwerth
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Olena Zamora
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu, 50411, Estonia
| | - Dmitry Yarmolinsky
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu, 50411, Estonia
| | - Taly Trainin
- Fruit Tree Sciences, Agricultural Research Organization (ARO), The Volcani Center, Newe Ya’ar Research Center, Ramat Yishay, 30095, Israel
| | - Hannes Kollist
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu, 50411, Estonia
| | - Alisa Huffaker
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Wouter-Jan Rappel
- Department of Physics, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Julian I. Schroeder
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093-0116, USA
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8
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Xiao L, Ma W, Zhang J, Pu X, Rengel Z, Song Z, Chen Q. Phytomelatonin interferes with flavonols biosynthesis to regulate ROS production and stomatal closure in tobacco. JOURNAL OF PLANT PHYSIOLOGY 2023; 284:153977. [PMID: 37062233 DOI: 10.1016/j.jplph.2023.153977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 03/19/2023] [Accepted: 03/23/2023] [Indexed: 06/19/2023]
Abstract
Flavonols are well-known antioxidants that prevent stomatal closure via interfering with ROS signaling. Phytomelatonin regulates stomatal closure, but the signaling pathways are still largely unknown. Here, we investigated the role of flavonols in phytomelatonin-mediated stomatal closure in tobacco plants. The application of melatonin induced stomatal closure through NADPH oxidase-mediated ROS production. Transgenic tobacco plants overexpressing soybean GmSNAT1 (coding for serotonin N-acetyltransferase that catalyzes the penultimate step in phytomelatonin biosynthesis) had higher phytomelatonin concentration, accumulated more ROS in guard cells and were more sensitive to melatonin-induced stomatal closure than the wild-type plants, which was associated with the higher expression of PMTR1-homologous genes. Exogenous melatonin decreased flavonol concentrations in guard cells and the expression of flavonoid-related genes in wild-type and transgenic tobacco plants, and these inhibitory effects were more obvious in GmSNAT1-overexpressing plants than the wild type. However, the melatonin-mediated stomatal closure and ROS production were diminished by the application of kaempferol (a type of flavonol). Additionally, transgenic tobacco plants with increased expression of NtFLS (encoding flavonol synthase) were less sensitive to melatonin-induced stomatal closure. In conclusion, phytomelatonin hampers the biosynthesis of flavonols in guard cells, which results in high concentration of ROS and induces stomatal closure in tobacco plants.
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Affiliation(s)
- Lin Xiao
- Faculty of Life Science and Technology, Kunming University of Science and Technology, 650500, Kunming, China
| | - Wenna Ma
- Faculty of Life Science and Technology, Kunming University of Science and Technology, 650500, Kunming, China
| | - Jiarong Zhang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, 650500, Kunming, China; Yunnan Modern Professional Technology College, 675000, Chuxiong, China
| | - Xiaojun Pu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, 650500, Kunming, China
| | - Zed Rengel
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia; Institute for Adriatic Crops and Karst Reclamation, 21000, Split, Croatia
| | - Zhongbang Song
- Yunnan Academy of Tobacco Agricultural Sciences, Kunming, China.
| | - Qi Chen
- Faculty of Life Science and Technology, Kunming University of Science and Technology, 650500, Kunming, China.
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9
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Hasan MK, Xing QF, Zhou CY, Wang KX, Xu T, Yang P, Qi ZY, Shao SJ, Ahammed GJ, Zhou J. Melatonin mediates elevated carbon dioxide-induced photosynthesis and thermotolerance in tomato. J Pineal Res 2023; 74:e12858. [PMID: 36732033 DOI: 10.1111/jpi.12858] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 01/11/2023] [Accepted: 01/30/2023] [Indexed: 02/04/2023]
Abstract
Increasing carbon dioxide (CO2 ) promotes photosynthesis and mitigates heat stress-induced deleterious effects on plants, but the regulatory mechanisms remain largely unknown. Here, we found that tomato (Solanum lycopersicum L.) plants treated with high atmospheric CO2 concentrations (600, 800, and 1000 µmol mol-1 ) accumulated increased levels of melatonin (N-acetyl-5-methoxy tryptamine) in their leaves and this response is conserved across many plant species, including Arabidopsis, rice, wheat, mustard, cucumber, watermelon, melon, and hot pepper. Elevated CO2 (eCO2 ; 800 µmol mol-1 ) caused a 6.8-fold increase in leaf melatonin content, and eCO2 -induced melatonin biosynthesis preferentially occurred through chloroplast biosynthetic pathways in tomato plants. Crucially, manipulation of endogenous melatonin levels by genetic means affected the eCO2 -induced accumulation of sugar and starch in tomato leaves. Furthermore, net photosynthetic rate, maximum photochemical efficiency of photosystem II, and transcript levels of chloroplast- and nuclear-encoded photosynthetic genes, such as rbcL, rbcS, rbcA, psaD, petB, and atpA, significantly increased in COMT1 overexpressing (COMT1-OE) tomato plants, but not in melatonin-deficient comt1 mutants at eCO2 conditions. While eCO2 enhanced plant tolerance to heat stress (42°C) in wild-type and COMT1-OE, melatonin deficiency compromised eCO2 -induced thermotolerance in comt1 plants. The expression of heat shock proteins genes increased in COMT1-OE but not in comt1 plants in response to eCO2 under heat stress. Further analysis revealed that eCO2 -induced thermotolerance was closely linked to the melatonin-dependent regulation of reactive oxygen species, redox homeostasis, cellular protein protection, and phytohormone metabolism. This study unveiled a crucial mechanism of elevated CO2 -induced thermotolerance in which melatonin acts as an essential endogenous signaling molecule in tomato plants.
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Affiliation(s)
- Md Kamrul Hasan
- Hainan Institute, Zhejiang University, Sanya, China
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Qu-Fan Xing
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Can-Yu Zhou
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Kai-Xin Wang
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Tong Xu
- Hainan Institute, Zhejiang University, Sanya, China
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Ping Yang
- Agricultural Experiment Station, Zhejiang University, Hangzhou, China
| | - Zhen-Yu Qi
- Hainan Institute, Zhejiang University, Sanya, China
- Agricultural Experiment Station, Zhejiang University, Hangzhou, China
| | - Shu-Jun Shao
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
| | - Golam Jalal Ahammed
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, China
- Henan International Joint Laboratory of Stress Resistance Regulation and Safe Production of Protected Vegetables, Henan University of Science and Technology, Luoyang, China
| | - Jie Zhou
- Hainan Institute, Zhejiang University, Sanya, China
- Department of Horticulture, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zijingang Campus, Zhejiang University, Hangzhou, China
- Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Ministry of Agriculture of China, Hangzhou, China
- Shandong (Linyi) Institute of Modern Agriculture, Zhejiang University, Linyi, China
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10
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Nicolas-Espinosa J, Garcia-Ibañez P, Lopez-Zaplana A, Yepes-Molina L, Albaladejo-Marico L, Carvajal M. Confronting Secondary Metabolites with Water Uptake and Transport in Plants under Abiotic Stress. Int J Mol Sci 2023; 24:ijms24032826. [PMID: 36769147 PMCID: PMC9917477 DOI: 10.3390/ijms24032826] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 01/23/2023] [Accepted: 01/28/2023] [Indexed: 02/05/2023] Open
Abstract
Phenolic compounds and glucosinolates are secondary plant metabolites that play fundamental roles in plant resistance to abiotic stress. These compounds have been found to increase in stress situations related to plant adaptive capacity. This review assesses the functions of phenolic compounds and glucosinolates in plant interactions involving abiotic stresses such as drought, salinity, high temperature, metals toxicity, and mineral deficiency or excess. Furthermore, their relation with water uptake and transport mediated through aquaporins is reviewed. In this way, the increases of phenolic compounds and glucosinolate synthesis have been related to primary responses to abiotic stress and induction of resistance. Thus, their metabolic pathways, root exudation, and external application are related to internal cell and tissue movement, with a lack of information in this latter aspect.
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11
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Li Y, Zhu W, Xiang Q, Kim J, Dufresne C, Liu Y, Li T, Chen S. Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics. Int J Mol Sci 2023; 24:ijms24032249. [PMID: 36768571 PMCID: PMC9916794 DOI: 10.3390/ijms24032249] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/06/2022] [Accepted: 01/19/2023] [Indexed: 01/25/2023] Open
Abstract
Large-scale high throughput metabolomic technologies are indispensable components of systems biology in terms of discovering and defining the metabolite parts of the system. However, the lack of a plant metabolite spectral library limits the metabolite identification of plant metabolomic studies. Here, we have created a plant metabolite spectral library using 544 authentic standards, which increased the efficiency of identification for untargeted metabolomic studies. The process of creating the spectral library was described, and the mzVault library was deposited in the public repository for free download. Furthermore, based on the spectral library, we describe a process of creating a pseudo-targeted method, which was applied to a proof-of-concept study of Arabidopsis leaf extracts. As authentic standards become available, more metabolite spectra can be easily incorporated into the spectral library to improve the mzVault package.
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Affiliation(s)
- Yangyang Li
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | - Wei Zhu
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | - Qingyuan Xiang
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL 32611, USA
| | - Jeongim Kim
- Horticultural Sciences Department, University of Florida, Gainesville, FL 32610, USA
| | - Craig Dufresne
- Thermo Scientific Training Institute, West Palm Beach, FL 32407, USA
| | - Yufeng Liu
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
| | - Tianlai Li
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
| | - Sixue Chen
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL 32611, USA
- Department of Biology, University of Mississippi, Oxford, MS 38677, USA
- Correspondence:
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12
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Integration of Electrical Signals and Phytohormones in the Control of Systemic Response. Int J Mol Sci 2023; 24:ijms24010847. [PMID: 36614284 PMCID: PMC9821543 DOI: 10.3390/ijms24010847] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/26/2022] [Accepted: 12/28/2022] [Indexed: 01/05/2023] Open
Abstract
Plants are constantly exposed to environmental stresses. Local stimuli sensed by one part of a plant are translated into long-distance signals that can influence the activities in distant tissues. Changes in levels of phytohormones in distant parts of the plant occur in response to various local stimuli. The regulation of hormone levels can be mediated by long-distance electrical signals, which are also induced by local stimulation. We consider the crosstalk between electrical signals and phytohormones and identify interaction points, as well as provide insights into the integration nodes that involve changes in pH, Ca2+ and ROS levels. This review also provides an overview of our current knowledge of how electrical signals and hormones work together to induce a systemic response.
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13
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Advances in Plant Metabolomics and Its Applications in Stress and Single-Cell Biology. Int J Mol Sci 2022; 23:ijms23136985. [PMID: 35805979 PMCID: PMC9266571 DOI: 10.3390/ijms23136985] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 06/19/2022] [Accepted: 06/19/2022] [Indexed: 02/04/2023] Open
Abstract
In the past two decades, the post-genomic era envisaged high-throughput technologies, resulting in more species with available genome sequences. In-depth multi-omics approaches have evolved to integrate cellular processes at various levels into a systems biology knowledge base. Metabolomics plays a crucial role in molecular networking to bridge the gaps between genotypes and phenotypes. However, the greater complexity of metabolites with diverse chemical and physical properties has limited the advances in plant metabolomics. For several years, applications of liquid/gas chromatography (LC/GC)-mass spectrometry (MS) and nuclear magnetic resonance (NMR) have been constantly developed. Recently, ion mobility spectrometry (IMS)-MS has shown utility in resolving isomeric and isobaric metabolites. Both MS and NMR combined metabolomics significantly increased the identification and quantification of metabolites in an untargeted and targeted manner. Thus, hyphenated metabolomics tools will narrow the gap between the number of metabolite features and the identified metabolites. Metabolites change in response to environmental conditions, including biotic and abiotic stress factors. The spatial distribution of metabolites across different organs, tissues, cells and cellular compartments is a trending research area in metabolomics. Herein, we review recent technological advancements in metabolomics and their applications in understanding plant stress biology and different levels of spatial organization. In addition, we discuss the opportunities and challenges in multiple stress interactions, multi-omics, and single-cell metabolomics.
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14
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Protein glycosylation changes during systemic acquired resistance in Arabidopsis thaliana. Int J Biol Macromol 2022; 212:381-392. [PMID: 35623457 DOI: 10.1016/j.ijbiomac.2022.05.126] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/08/2022] [Accepted: 05/17/2022] [Indexed: 01/01/2023]
Abstract
N-glycosylation, an important post-translational modification of proteins in all eukaryotes, has been clearly shown to be involved in numerous diseases in mammalian systems. In contrast, little is known regarding the role of protein N-glycosylation in plant defensive responses to pathogen infection. We identified, for the first time, glycoproteins related to systemic acquired resistance (SAR) in an Arabidopsis thaliana model, using a glycoproteomics platform based on high-resolution mass spectrometry. 407 glycosylation sites corresponding to 378 glycopeptides and 273 unique glycoproteins were identified. 65 significantly changed glycoproteins with 80 N-glycosylation sites were detected in systemic leaves of SAR-induced plants, including numerous GDSL-like lipases, thioglucoside glucohydrolases, kinases, and glycosidases. Functional enrichment analysis revealed that significantly changed glycoproteins were involved mainly in N-glycan biosynthesis and degradation, phenylpropanoid biosynthesis, cutin and wax biosynthesis, and plant-pathogen interactions. Comparative analysis of glycoproteomics and proteomics data indicated that glycoproteomics analysis is an efficient method for screening proteins associated with SAR. The present findings clarify glycosylation status and sites of A. thaliana proteins, and will facilitate further research on roles of glycoproteins in SAR induction.
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15
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Lv Q, Li X, Fan B, Zhu C, Chen Z. The Cellular and Subcellular Organization of the Glucosinolate–Myrosinase System against Herbivores and Pathogens. Int J Mol Sci 2022; 23:ijms23031577. [PMID: 35163500 PMCID: PMC8836197 DOI: 10.3390/ijms23031577] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2022] [Revised: 01/26/2022] [Accepted: 01/27/2022] [Indexed: 01/01/2023] Open
Abstract
Glucosinolates are an important class of secondary metabolites in Brassicales plants with a critical role in chemical defense. Glucosinolates are chemically inactive but can be hydrolyzed by myrosinases to produce a range of chemically active compounds toxic to herbivores and pathogens, thereby constituting the glucosinolate–myrosinase defense system or the mustard oil bomb. During the evolution, Brassicales plants have developed not only complex biosynthetic pathways for production of a large number of glucosinolate structures but also different classes of myrosinases that differ in catalytic mechanisms and substrate specificity. Studies over the past several decades have made important progress in the understanding of the cellular and subcellular organization of the glucosinolate–myrosinase system for rapid and timely detonation of the mustard oil bomb upon tissue damage after herbivore feeding and pathogen infection. Progress has also been made in understanding the mechanisms that herbivores and pathogens have evolved to counter the mustard oil bomb. In this review, we summarize our current understanding of the function and organization of the glucosinolate–myrosinase system in Brassicales plants and discuss both the progresses and future challenges in addressing this complex defense system as an excellent model for analyzing plant chemical defense.
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Affiliation(s)
- Qiaoqiao Lv
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China; (Q.L.); (X.L.)
| | - Xifeng Li
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China; (Q.L.); (X.L.)
| | - Baofang Fan
- Purdue Center for Plant Biology, Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907-2054, USA;
| | - Cheng Zhu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China; (Q.L.); (X.L.)
- Correspondence: (C.Z.); (Z.C.); Tel.: +86-571-8683-6090 (C.Z.); +1-765-494-4657 (Z.C.)
| | - Zhixiang Chen
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China; (Q.L.); (X.L.)
- Purdue Center for Plant Biology, Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907-2054, USA;
- Correspondence: (C.Z.); (Z.C.); Tel.: +86-571-8683-6090 (C.Z.); +1-765-494-4657 (Z.C.)
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16
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Mitogen-Activated Protein Kinase 4-Regulated Metabolic Networks. Int J Mol Sci 2022; 23:ijms23020880. [PMID: 35055063 PMCID: PMC8779387 DOI: 10.3390/ijms23020880] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 01/07/2022] [Accepted: 01/11/2022] [Indexed: 01/21/2023] Open
Abstract
Mitogen-activated protein kinase 4 (MPK4) was first identified as a negative regulator of systemic acquired resistance. It is also an important kinase involved in many other biological processes in plants, including cytokinesis, reproduction, and photosynthesis. Arabidopsis thaliana mpk4 mutant is dwarf and sterile. Previous omics studies including genomics, transcriptomics, and proteomics have revealed new functions of MPK4 in different biological processes. However, due to challenges in metabolomics, no study has touched upon the metabolomic profiles of the mpk4 mutant. What metabolites and metabolic pathways are potentially regulated by MPK4 are not known. Metabolites are crucial components of plants, and they play important roles in plant growth and development, signaling, and defense. Here we used targeted and untargeted metabolomics to profile metabolites in the wild type and the mpk4 mutant. We found that in addition to the jasmonic acid and salicylic acid pathways, MPK4 is involved in polyamine synthesis and photosynthesis. In addition, we also conducted label-free proteomics of the two genotypes. The integration of metabolomics and proteomics data allows for an insight into the metabolomic networks that are potentially regulated by MPK4.
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17
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Sun L, Yuan Z, Wang D, Li J, Shi J, Hu Y, Yu J, Chen X, Chen S, Liang W, Zhang D. Carbon Starved Anther modulates sugar and ABA metabolism to protect rice seed germination and seedling fitness. PLANT PHYSIOLOGY 2021; 187:2405-2418. [PMID: 34618084 PMCID: PMC8644061 DOI: 10.1093/plphys/kiab391] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
Seed germination is critical for plant survival and agricultural production, which is affected by both internal seed factors and external environmental conditions. However, the genetic basis and underlying molecular mechanisms of early seed germination in crops remain largely unclear. Here, we report that R2R3 MYB transcription factor Carbon Starved Anther (CSA) is expressed specifically in Oryza sativa embryo and aleurone in response to seed imbibition, peaking at 3-6 h and undetectable by 24-h post-imbibition. CSA seeds germinated more quickly than wild-type rice seeds and had higher levels of amylase activity, glucose, and inactive abscisic acid-glucose ester (ABA-GE), but lower levels of ABA. Through analyzing the CSA-associated transcriptome and CSA binding to downstream target genes, we identified two glycolytic genes as direct CSA targets. CSA inhibits Amylase 3A expression to limit glucose production from starch and activates Os3BGlu6 expression to promote de-conjugation of ABA-GE to ABA; these functions serve to slow germination and improve seedling resilience to abiotic stress in the first 3 weeks of growth. Therefore, this study unveils a protection mechanism conferred by CSA during early seed germination by balancing glucose and ABA metabolism to optimize seed germination and stress response fitness.
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Affiliation(s)
- Linlin Sun
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Zheng Yuan
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
- Key Laboratory of Crop Marker-Assisted Breeding of Huaian Municipality, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environmental Protection, Huaian 223300, China
| | - Duoxiang Wang
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jingbin Li
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jin Shi
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yangyang Hu
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jing Yu
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xiaofei Chen
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Sixue Chen
- Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, Florida 32610, USA
| | - Wanqi Liang
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Dabing Zhang
- Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
- Key Laboratory of Crop Marker-Assisted Breeding of Huaian Municipality, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environmental Protection, Huaian 223300, China
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
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Fraudentali I, Pedalino C, Tavladoraki P, Angelini R, Cona A. A New Player in Jasmonate-Mediated Stomatal Closure: The Arabidopsis thaliana Copper Amine Oxidase β. Cells 2021; 10:cells10123399. [PMID: 34943906 PMCID: PMC8699484 DOI: 10.3390/cells10123399] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 11/18/2021] [Accepted: 11/30/2021] [Indexed: 11/16/2022] Open
Abstract
Plant defence responses to adverse environmental conditions include different stress signalling, allowing plant acclimation and survival. Among these responses one of the most common, immediate, and effective is the modulation of the stomatal aperture, which integrates different transduction pathways involving hydrogen peroxide (H2O2), calcium (Ca2+), nitric oxide (NO), phytohormones and other signalling components. The Arabidopsis thaliana copper amine oxidases β (AtCuAOβ) encodes an apoplastic CuAO expressed in guard cells and root protoxylem tissues which oxidizes polyamines to aminoaldehydes with the production of H2O2 and ammonia. Here, its role in stomatal closure, signalled by the wound-associated phytohormone methyl-jasmonate (MeJA) was explored by pharmacological and genetic approaches. Obtained data show that AtCuAOβ tissue-specific expression is induced by MeJA, especially in stomata guard cells. Interestingly, two Atcuaoβ T-DNA insertional mutants are unresponsive to this hormone, showing a compromised MeJA-mediated stomatal closure compared to the wild-type (WT) plants. Coherently, Atcuaoβ mutants also show compromised H2O2-production in guard cells upon MeJA treatment. Furthermore, the H2O2 scavenger N,N1-dimethylthiourea (DMTU) and the CuAO-specific inhibitor 2-bromoethylamine (2-BrEtA) both reversed the MeJA-induced stomatal closure and the H2O2 production in WT plants. Our data suggest that AtCuAOβ is involved in the H2O2 production implicated in MeJA-induced stomatal closure.
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Affiliation(s)
- Ilaria Fraudentali
- Department of Science, University “Roma Tre”, 00146 Rome, Italy; (I.F.); (C.P.); (P.T.); (R.A.)
| | - Chiara Pedalino
- Department of Science, University “Roma Tre”, 00146 Rome, Italy; (I.F.); (C.P.); (P.T.); (R.A.)
| | - Paraskevi Tavladoraki
- Department of Science, University “Roma Tre”, 00146 Rome, Italy; (I.F.); (C.P.); (P.T.); (R.A.)
- Interuniversity Consortium National Institute of Biostructures and Biosystems (INBB), 00136 Rome, Italy
| | - Riccardo Angelini
- Department of Science, University “Roma Tre”, 00146 Rome, Italy; (I.F.); (C.P.); (P.T.); (R.A.)
- Interuniversity Consortium National Institute of Biostructures and Biosystems (INBB), 00136 Rome, Italy
| | - Alessandra Cona
- Department of Science, University “Roma Tre”, 00146 Rome, Italy; (I.F.); (C.P.); (P.T.); (R.A.)
- Interuniversity Consortium National Institute of Biostructures and Biosystems (INBB), 00136 Rome, Italy
- Correspondence: ; Tel.: +39-06-5733-6360
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19
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Ahammed GJ, Guang Y, Yang Y, Chen J. Mechanisms of elevated CO 2-induced thermotolerance in plants: the role of phytohormones. PLANT CELL REPORTS 2021; 40:2273-2286. [PMID: 34269828 DOI: 10.1007/s00299-021-02751-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 06/29/2021] [Indexed: 05/20/2023]
Abstract
Rising atmospheric CO2 is a key driver of climate change, intensifying drastic changes in meteorological parameters. Plants can sense and respond to changes in environmental parameters including atmospheric CO2 and temperatures. High temperatures beyond the physiological threshold can significantly affect plant growth and development and thus attenuate crop productivity. However, elevated atmospheric CO2 can mitigate the deleterious effects of heat stress on plants. Despite a large body of literature supporting the positive impact of elevated CO2 on thermotolerance, the underlying biological mechanisms and precise molecular pathways that lead to enhanced tolerance to heat stress remain largely unclear. Under heat stress, elevated CO2-induced expression of respiratory burst oxidase homologs (RBOHs) and reactive oxygen species (ROS) signaling play a critical role in stomatal movement, which optimizes gas exchange to enhance photosynthesis and water use efficiency. Notably, elevated CO2 also fortifies antioxidant defense and redox homeostasis to alleviate heat-induced oxidative damage. Both hormone-dependent and independent pathways have been shown to mediate high CO2-induced thermotolerance. The activation of heat-shock factors and subsequent expression of heat-shock proteins are thought to be the essential mechanism downstream of hormone and ROS signaling. Here we review the role of phytohormones in plant response to high atmospheric CO2 and temperatures. We also discuss the potential mechanisms of elevated CO2-induced thermotolerance by focusing on several key phytohormones such as ethylene. Finally, we address some limitations of our current understanding and the need for further research to unveil the yet-unknown crosstalk between plant hormones in mediating high CO2-induced thermotolerance in plants.
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Affiliation(s)
- Golam Jalal Ahammed
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, China
| | - Yelan Guang
- Jiangxi Key Laboratory for Postharvest Technology and Nondestructive Testing of Fruits and Vegetables, Collaborative Innovation Center of Post-Harvest Key Technology and Quality Safety of Fruits and Vegetables, College of Agronomy, Jiangxi Agricultural University, Nanchang, 330045, China
| | - Youxin Yang
- Jiangxi Key Laboratory for Postharvest Technology and Nondestructive Testing of Fruits and Vegetables, Collaborative Innovation Center of Post-Harvest Key Technology and Quality Safety of Fruits and Vegetables, College of Agronomy, Jiangxi Agricultural University, Nanchang, 330045, China.
| | - Jinyin Chen
- Jiangxi Key Laboratory for Postharvest Technology and Nondestructive Testing of Fruits and Vegetables, Collaborative Innovation Center of Post-Harvest Key Technology and Quality Safety of Fruits and Vegetables, College of Agronomy, Jiangxi Agricultural University, Nanchang, 330045, China.
- Pingxiang University, Pingxiang, Jiangxi, China.
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20
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Electrical Signaling of Plants under Abiotic Stressors: Transmission of Stimulus-Specific Information. Int J Mol Sci 2021; 22:ijms221910715. [PMID: 34639056 PMCID: PMC8509212 DOI: 10.3390/ijms221910715] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 09/20/2021] [Accepted: 09/22/2021] [Indexed: 12/16/2022] Open
Abstract
Plants have developed complex systems of perception and signaling to adapt to changing environmental conditions. Electrical signaling is one of the most promising candidates for the regulatory mechanisms of the systemic functional response under the local action of various stimuli. Long-distance electrical signals of plants, such as action potential (AP), variation potential (VP), and systemic potential (SP), show specificities to types of inducing stimuli. The systemic response induced by a long-distance electrical signal, representing a change in the activity of a complex of molecular-physiological processes, includes a nonspecific component and a stimulus-specific component. This review discusses possible mechanisms for transmitting information about the nature of the stimulus and the formation of a specific systemic response with the participation of electrical signals induced by various abiotic factors.
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21
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Zamora O, Schulze S, Azoulay-Shemer T, Parik H, Unt J, Brosché M, Schroeder JI, Yarmolinsky D, Kollist H. Jasmonic acid and salicylic acid play minor roles in stomatal regulation by CO 2 , abscisic acid, darkness, vapor pressure deficit and ozone. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:134-150. [PMID: 34289193 PMCID: PMC8842987 DOI: 10.1111/tpj.15430] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 07/07/2021] [Accepted: 07/14/2021] [Indexed: 05/08/2023]
Abstract
Jasmonic acid (JA) and salicylic acid (SA) regulate stomatal closure, preventing pathogen invasion into plants. However, to what extent abscisic acid (ABA), SA and JA interact, and what the roles of SA and JA are in stomatal responses to environmental cues, remains unclear. Here, by using intact plant gas-exchange measurements in JA and SA single and double mutants, we show that stomatal responsiveness to CO2 , light intensity, ABA, high vapor pressure deficit and ozone either did not or, for some stimuli only, very slightly depended upon JA and SA biosynthesis and signaling mutants, including dde2, sid2, coi1, jai1, myc2 and npr1 alleles. Although the stomata in the mutants studied clearly responded to ABA, CO2 , light and ozone, ABA-triggered stomatal closure in npr1-1 was slightly accelerated compared with the wild type. Stomatal reopening after ozone pulses was quicker in the coi1-16 mutant than in the wild type. In intact Arabidopsis plants, spraying with methyl-JA led to only a modest reduction in stomatal conductance 80 min after treatment, whereas ABA and CO2 induced pronounced stomatal closure within minutes. We could not document a reduction of stomatal conductance after spraying with SA. Coronatine-induced stomatal opening was initiated slowly after 1.5-2.0 h, and reached a maximum by 3 h after spraying intact plants. Our results suggest that ABA, CO2 and light are major regulators of rapid guard cell signaling, whereas JA and SA could play only minor roles in the whole-plant stomatal response to environmental cues in Arabidopsis and Solanum lycopersicum (tomato).
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Affiliation(s)
- Olena Zamora
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia
| | - Sebastian Schulze
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, La Jolla, CA 92093, USA
| | - Tamar Azoulay-Shemer
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, La Jolla, CA 92093, USA
- Fruit Tree Sciences, Agricultural Research Organization (ARO), the Volcani Center, Newe Ya’ar Research Center, Ramat Yishay, Israel, and
| | - Helen Parik
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia
| | - Jaanika Unt
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia
| | - Mikael Brosché
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, Viikki Plant Science Centre, University of Helsinki, PO Box 65 (Viikinkaari 1), Helsinki FI-00014, Finland
| | - Julian I. Schroeder
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, La Jolla, CA 92093, USA
| | - Dmitry Yarmolinsky
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia
- For correspondence ()
| | - Hannes Kollist
- Plant Signal Research Group, Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia
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22
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Roy S, Mathur P. Delineating the mechanisms of elevated CO 2 mediated growth, stress tolerance and phytohormonal regulation in plants. PLANT CELL REPORTS 2021; 40:1345-1365. [PMID: 34169360 DOI: 10.1007/s00299-021-02738-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 06/14/2021] [Indexed: 05/20/2023]
Abstract
Global climate change has drastically affected natural ecosystems and crop productivity. Among several factors of global climate change, CO2 is considered to be the dynamic parameter that will regulate the responses of all biological system on earth in the coming decade. A number of experimental studies in the past have demonstrated the positive effects of elevated CO2 on photosynthesis, growth and biomass, biochemical and physiological processes such as increased C:N ratio, secondary metabolite production, as well as phytohormone concentrations. On the other hand, elevated CO2 imparts an adverse effect on the nutritional quality of crop plants and seed quality. Investigations have also revealed effects of elevated CO2 both at cellular and molecular level altering expression of various genes involved in various metabolic processes and stress signaling pathways. Elevated CO2 is known to have mitigating effect on plants in presence of abiotic stresses such as drought, salinity, temperature etc., while contrasting effects in the presence of different biotic agents i.e. phytopathogens, insects and herbivores. However, a well-defined crosstalk is incited by elevated CO2 both under abiotic and biotic stresses in terms of phytohormones concentration and secondary metabolites production. With this background, the present review attempts to shed light on the major effects of elevated CO2 on plant growth, physiological and molecular responses and will highlight the interactive effects of elevated CO2 with other abiotic and biotic factors. The article will also provide deep insights into the phytohormones modulation under elevated CO2.
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Affiliation(s)
- Swarnendu Roy
- Plant Biochemistry Laboratory, Department of Botany, University of North Bengal, Raja Rammohunpur, Dist. Darjeeling, West Bengal, India
| | - Piyush Mathur
- Microbiology Laboratory, Department of Botany, University of North Bengal, Raja Rammohunpur, Dist. Darjeeling, West Bengal, India.
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23
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Chen J, Xue M, Liu H, Fernie AR, Chen W. Exploring the genic resources underlying metabolites through mGWAS and mQTL in wheat: From large-scale gene identification and pathway elucidation to crop improvement. PLANT COMMUNICATIONS 2021; 2:100216. [PMID: 34327326 PMCID: PMC8299079 DOI: 10.1016/j.xplc.2021.100216] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 06/04/2021] [Accepted: 06/28/2021] [Indexed: 05/23/2023]
Abstract
Common wheat (Triticum aestivum L.) is a leading cereal crop, but has lagged behind with respect to the interpretation of the molecular mechanisms of phenotypes compared with other major cereal crops such as rice and maize. The recently available genome sequence of wheat affords the pre-requisite information for efficiently exploiting the potential molecular resources for decoding the genetic architecture of complex traits and identifying valuable breeding targets. Meanwhile, the successful application of metabolomics as an emergent large-scale profiling methodology in several species has demonstrated this approach to be accessible for reaching the above goals. One such productive avenue is combining metabolomics approaches with genetic designs. However, this trial is not as widespread as that for sequencing technologies, especially when the acquisition, understanding, and application of metabolic approaches in wheat populations remain more difficult and even arguably underutilized. In this review, we briefly introduce the techniques used in the acquisition of metabolomics data and their utility in large-scale identification of functional candidate genes. Considerable progress has been made in delivering improved varieties, suggesting that the inclusion of information concerning these metabolites and genes and metabolic pathways enables a more explicit understanding of phenotypic traits and, as such, this procedure could serve as an -omics-informed roadmap for executing similar improvement strategies in wheat and other species.
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Affiliation(s)
- Jie Chen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Mingyun Xue
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Hongbo Liu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Alisdair R. Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany
| | - Wei Chen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
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24
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Wakamatsu A, Mori IC, Matsuura T, Taniwaki Y, Ishii R, Yoshida R. Possible roles for phytohormones in controlling the stomatal behavior of Mesembryanthemum crystallinum during the salt-induced transition from C 3 to crassulacean acid metabolism. JOURNAL OF PLANT PHYSIOLOGY 2021; 262:153448. [PMID: 34058643 DOI: 10.1016/j.jplph.2021.153448] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 05/16/2021] [Accepted: 05/19/2021] [Indexed: 06/12/2023]
Abstract
The halophyte ice plant (Mesembryanthemum crystallinum) converts its mode of photosynthesis from C3 to crassulacean acid metabolism (CAM) during severe water stress. During the transition to CAM, the plant induces CAM-related genes and changes its diurnal stomatal behavior to take up CO2 efficiently at night. However, limited information concerning this signaling exists. Here, we investigated the changes in the diurnal stomatal behavior of M. crystallinum during its shift in photosynthesis using a detached epidermis. M. crystallinum plants grown under C3 conditions opened their stomata during the day and closed them at night. However, CAM-induced plants closed their stomata during the day and opened them at night. Quantitative analysis of endogenous phytohormones revealed that trans-zeatin levels were high in CAM-induced plants. In contrast, the levels of jasmonic acid (JA) and JA-isoleucine were severely reduced in CAM-induced plants, specifically at night. CAM induction did not alter the levels of abscisic acid; however, inhibitors of abscisic acid synthesis suppressed CAM-induced stomatal closure. These results indicate that M. crystallinum regulates the diurnal balance of cytokinin and JA during CAM transition to alter stomatal behavior.
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Affiliation(s)
- Ayano Wakamatsu
- Laboratory of Horticultural Science, Faculty of Agriculture, Kagoshima University, 1-21-24 Kohrimoto, Kagoshima, Kagoshima, 890-0065, Japan
| | - Izumi C Mori
- Institute of Plant Sciences and Resources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046, Japan
| | - Takakazu Matsuura
- Institute of Plant Sciences and Resources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046, Japan
| | - Yuichi Taniwaki
- Laboratory of Horticultural Science, Faculty of Agriculture, Kagoshima University, 1-21-24 Kohrimoto, Kagoshima, Kagoshima, 890-0065, Japan
| | - Ryotaro Ishii
- Laboratory of Horticultural Science, Faculty of Agriculture, Kagoshima University, 1-21-24 Kohrimoto, Kagoshima, Kagoshima, 890-0065, Japan
| | - Riichiro Yoshida
- Laboratory of Horticultural Science, Faculty of Agriculture, Kagoshima University, 1-21-24 Kohrimoto, Kagoshima, Kagoshima, 890-0065, Japan.
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25
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Kang J, David L, Li Y, Cang J, Chen S. Three-in-One Simultaneous Extraction of Proteins, Metabolites and Lipids for Multi-Omics. Front Genet 2021; 12:635971. [PMID: 33936167 PMCID: PMC8082496 DOI: 10.3389/fgene.2021.635971] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 02/18/2021] [Indexed: 11/13/2022] Open
Abstract
Elucidation of complex molecular networks requires integrative analysis of molecular features and changes at different levels of information flow and regulation. Accordingly, high throughput functional genomics tools such as transcriptomics, proteomics, metabolomics, and lipidomics have emerged to provide system-wide investigations. Unfortunately, analysis of different types of biomolecules requires specific sample extraction procedures in combination with specific analytical instrumentation. The most efficient extraction protocols often only cover a restricted type of biomolecules due to their different physicochemical properties. Therefore, several sets/aliquots of samples are needed for extracting different molecules. Here we adapted a biphasic fractionation method to extract proteins, metabolites, and lipids from the same sample (3-in-1) for liquid chromatography-tandem mass spectrometry (LC-MS/MS) multi-omics. To demonstrate utility of the improved method, we used bacteria-primed Arabidopsis leaves to generate multi-omics datasets from the same sample. In total, we were able to analyze 1849 proteins, 1967 metabolites, and 424 lipid species in single samples. The molecules cover a wide range of biological and molecular processes, and allow quantitative analyses of different molecules and pathways. Our results have shown the clear advantages of the multi-omics method, including sample conservation, high reproducibility, and tight correlation between different types of biomolecules.
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Affiliation(s)
- Jianing Kang
- College of Life Science, Northeast Agricultural University, Harbin, China.,Department of Biology, University of Florida, Gainesville, FL, United States.,University of Florida Genetics Institute, Gainesville, FL, United States
| | - Lisa David
- Department of Biology, University of Florida, Gainesville, FL, United States.,University of Florida Genetics Institute, Gainesville, FL, United States
| | - Yangyang Li
- Department of Biology, University of Florida, Gainesville, FL, United States.,College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Jing Cang
- College of Life Science, Northeast Agricultural University, Harbin, China
| | - Sixue Chen
- Department of Biology, University of Florida, Gainesville, FL, United States.,University of Florida Genetics Institute, Gainesville, FL, United States.,Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, United States.,Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, United States
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26
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Polishchuk OV. Stress-Related Changes in the Expression and Activity of Plant Carbonic Anhydrases. PLANTA 2021; 253:58. [PMID: 33532871 DOI: 10.1007/s00425-020-03553-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 12/23/2020] [Indexed: 05/17/2023]
Abstract
The data on stress-related changes in the expression and activity of plant carbonic anhydrases (CAs) suggest that they are generally upregulated at moderate stress severity. This indicates probable involvement of CAs in adaptation to drought, high salinity, heat, high light, Ci deficit, and excess bicarbonate. The changes in CA levels under cold stress are less studied and generally represented by the downregulation of CAs excepting βCA2. Excess Cd2+ and deficit of Zn2+ specifically reduce CA activity and reduce its synthesis. Probable roles of βCAs in stress adaptation include stomatal closure, ROS scavenging and partial compensation for decreased mesophyll CO2 conductance. βCAs play contrasting roles in pathogen responses, interacting with phytohormone signaling networks. Their role can be either negative or positive, probably depending on the host-pathogen system, pathogen initial titer, and levels of ·NO and ROS. It is still not clear why CAs are suppressed under severe stress levels. It should be noted, that the role of βCAs in the facilitation of CO2 diffusion and their involvement in redox signaling or ROS detoxication are potentially antagonistic, as they are inactivated by oxidation or nitrosylation. Interestingly, some chloroplastic βCAs may be relocated to the cytoplasm under stress conditions, but the physiological meaning of this effect remains to be studied.
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Affiliation(s)
- O V Polishchuk
- Membranology and Phytochemistry Department, M.G. Kholodny Institute of Botany of NAS of Ukraine, 2 Tereshchenkivska Str, Kyiv, 01004, Ukraine.
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27
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Xiang Q, Lott AA, Assmann SM, Chen S. Advances and perspectives in the metabolomics of stomatal movement and the disease triangle. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 302:110697. [PMID: 33288010 DOI: 10.1016/j.plantsci.2020.110697] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 09/26/2020] [Accepted: 09/28/2020] [Indexed: 05/20/2023]
Abstract
Crops are continuously exposed to microbial pathogens that cause tremendous yield losses worldwide. Stomatal pores formed by pairs of specialized guard cells in the leaf epidermis represent a major route of pathogen entry. Guard cells have an essential role as a first line of defense against pathogens. Metabolomics is an indispensable systems biology tool that has facilitated discovery and functional studies of metabolites that regulate stomatal movement in response to pathogens and other environmental factors. Guard cells, pathogens and environmental factors constitute the "stomatal disease triangle". The aim of this review is to highlight recent advances toward understanding the stomatal disease triangle in the context of newly discovered signaling molecules, hormone crosstalk, and consequent molecular changes that integrate pathogens and environmental sensing into stomatal immune responses. Future perspectives on emerging single-cell studies, multiomics and molecular imaging in the context of stomatal defense are discussed. Advances in this important area of plant biology will inform rational crop engineering and breeding for enhanced stomatal defense without disruption of other pathways that impact crop yield.
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Affiliation(s)
- Qingyuan Xiang
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL, USA
| | - Aneirin A Lott
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL, USA; Plant Molecular and Cellular Biology Program, University of Florida, FL, USA
| | - Sarah M Assmann
- Department of Biology, Pennsylvania State University, State College, PA, USA
| | - Sixue Chen
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL, USA; Plant Molecular and Cellular Biology Program, University of Florida, FL, USA; Proteomics and Mass Spectrometry Facility, University of Florida, FL, USA.
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28
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Zhou Q, Meng Q, Tan X, Ding W, Ma K, Xu Z, Huang X, Gao H. Protein Phosphorylation Changes During Systemic Acquired Resistance in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2021; 12:748287. [PMID: 34858456 PMCID: PMC8632492 DOI: 10.3389/fpls.2021.748287] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 10/08/2021] [Indexed: 05/03/2023]
Abstract
Systemic acquired resistance (SAR) in plants is a defense response that provides resistance against a wide range of pathogens at the whole-plant level following primary infection. Although the molecular mechanisms of SAR have been extensively studied in recent years, the role of phosphorylation that occurs in systemic leaves of SAR-induced plants is poorly understood. We used a data-independent acquisition (DIA) phosphoproteomics platform based on high-resolution mass spectrometry in an Arabidopsis thaliana model to identify phosphoproteins related to SAR establishment. A total of 8011 phosphorylation sites from 3234 proteins were identified in systemic leaves of Pseudomonas syringae pv. maculicola ES4326 (Psm ES4326) and mock locally inoculated plants. A total of 859 significantly changed phosphoproteins from 1119 significantly changed phosphopeptides were detected in systemic leaves of Psm ES4326 locally inoculated plants, including numerous transcription factors and kinases. A variety of defense response-related proteins were found to be differentially phosphorylated in systemic leaves of Psm ES4326 locally inoculated leaves, suggesting that these proteins may be functionally involved in SAR through phosphorylation or dephosphorylation. Significantly changed phosphoproteins were enriched mainly in categories related to response to abscisic acid, regulation of stomatal movement, plant-pathogen interaction, MAPK signaling pathway, purine metabolism, photosynthesis-antenna proteins, and flavonoid biosynthesis. A total of 28 proteins were regulated at both protein and phosphorylation levels during SAR. RT-qPCR analysis revealed that changes in phosphorylation levels of proteins during SAR did not result from changes in transcript abundance. This study provides comprehensive details of key phosphoproteins associated with SAR, which will facilitate further research on the molecular mechanisms of SAR.
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Affiliation(s)
- Qingfeng Zhou
- College of Biology and Food, Shangqiu Normal University, Shangqiu, China
| | - Qi Meng
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
| | - Xiaomin Tan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
| | - Wei Ding
- Shanghai Omicsspace Biotechnology Co., Ltd., Shanghai, China
| | - Kang Ma
- College of Biology and Food, Shangqiu Normal University, Shangqiu, China
| | - Ziqin Xu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
| | - Xuan Huang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
- *Correspondence: Xuan Huang,
| | - Hang Gao
- College of Biology and Food, Shangqiu Normal University, Shangqiu, China
- Hang Gao,
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29
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Zhu W, Han H, Liu A, Guan Q, Kang J, David L, Dufresne C, Chen S, Tian J. Combined ultraviolet and darkness regulation of medicinal metabolites in Mahonia bealei revealed by proteomics and metabolomics. J Proteomics 2020; 233:104081. [PMID: 33352312 DOI: 10.1016/j.jprot.2020.104081] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 12/15/2020] [Accepted: 12/17/2020] [Indexed: 12/19/2022]
Abstract
Roots of Mahonia bealei have been used as traditional Chinese medicine with antibacterial, antioxidant and anti-inflammatory properties due to its high alkaloid content. Previously, we reported that alkaloid and flavonoid contents in the M. bealei leaves could be increased by the combined ultraviolet B and dark treatment (UV+D). To explore the underlying metabolic pathways and networks, proteomic and metabolomic analyses of the M. bealei leaves were conducted. Proteins related to tricarboxylic acid cycle, transport and signaling varied greatly under the UV + D. Among them, calmodulin involved in calcium signaling and ATP-binding cassette transporter involved in transport of berberine were increased. Significantly changed metabolites were overrepresented in phenylalanine metabolism, nitrogen metabolism, phenylpropanoid, flavonoid and alkaloid biosynthesis. In addition, the levels of salicylic acid and gibberellin decreased in the UV group and increased in the UV + D group. These results indicate that multi-hormone crosstalk may regulate the biosynthesis of flavonoids and alkaloids to alleviate oxidative stress caused by the UV + D treatment. Furthermore, protoberberine alkaloids may be induced through calcium signaling crosstalk with reaction oxygen species and transported to leaves. SIGNIFICANCE: Mahonia bealei root and stem, not leaf, were used as traditional medicine for a long history because of the high contents of active components. In the present study, UV-B combined with dark treatments induced the production of alkaloids and flavonoids in the M. bealei leaf, especially protoberberine alkaloids such as berberine. Multi-omics analyses indicated that multi-hormone crosstalk, enhanced tricarboxylic acid cycle and active calcium signaling were involved. The study informs a strategy for utilization of the leaves, and improves understanding of the functions of secondary metabolites in M. bealei.
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Affiliation(s)
- Wei Zhu
- College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou 310027, PR China; Department of Biology, University of Florida, Gainesville, FL 32610, USA; Plant Molecular and Cellular Biology Program, University of Florida Genetics Institute, Gainesville, FL 32610, USA; Changsu Qiushi Technology Co., Ltd, Suzhou 215500, PR China
| | - Haote Han
- College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou 310027, PR China
| | - Amin Liu
- College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou 310027, PR China
| | - Qijie Guan
- College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou 310027, PR China; Department of Biology, University of Florida, Gainesville, FL 32610, USA; Plant Molecular and Cellular Biology Program, University of Florida Genetics Institute, Gainesville, FL 32610, USA
| | - Jianing Kang
- Department of Biology, University of Florida, Gainesville, FL 32610, USA; Plant Molecular and Cellular Biology Program, University of Florida Genetics Institute, Gainesville, FL 32610, USA; College of Life Science, Northeast Agricultural University, Harbin 150030, PR China
| | - Lisa David
- Department of Biology, University of Florida, Gainesville, FL 32610, USA; Plant Molecular and Cellular Biology Program, University of Florida Genetics Institute, Gainesville, FL 32610, USA
| | - Craig Dufresne
- Thermo Fisher Scientific, West Palm Beach, FL 33407, USA
| | - Sixue Chen
- Department of Biology, University of Florida, Gainesville, FL 32610, USA; Plant Molecular and Cellular Biology Program, University of Florida Genetics Institute, Gainesville, FL 32610, USA; Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL 32610, USA.
| | - Jingkui Tian
- College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou 310027, PR China.
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30
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Spatial and Temporal Dynamics of Electrical and Photosynthetic Activity and the Content of Phytohormones Induced by Local Stimulation of Pea Plants. PLANTS 2020; 9:plants9101364. [PMID: 33076246 PMCID: PMC7602463 DOI: 10.3390/plants9101364] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 09/27/2020] [Accepted: 10/12/2020] [Indexed: 01/29/2023]
Abstract
A local leaf burning causes variation potential (VP) propagation, a decrease in photosynthesis activity, and changes in the content of phytohormones in unstimulated leaves in pea plants. The VP-induced photosynthesis response develops in two phases: fast inactivation and long-term inactivation. Along with a decrease in photosynthetic activity, there is a transpiration suppression in unstimulated pea leaves, which corresponds to the long-term phase of photosynthesis response. Phytohormone level analysis showed an increase in the concentration of jasmonic acid (JA) preceding a transpiration suppression and a long-term phase of the photosynthesis response. Analysis of the spatial and temporal dynamics of electrical signals, phytohormone levels, photosynthesis, and transpiration activity showed the most pronounced changes in the more distant leaf from the area of local stimulation. The established features are related to the architecture of the vascular bundles in the pea stem.
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31
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Pang Q, Zhang T, Zhang A, Lin C, Kong W, Chen S. Proteomics and phosphoproteomics revealed molecular networks of stomatal immune responses. PLANTA 2020; 252:66. [PMID: 32979085 DOI: 10.1007/s00425-020-03474-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Accepted: 09/15/2020] [Indexed: 05/20/2023]
Abstract
Dynamic protein and phosphoprotein profiles uncovered the overall regulation of stomata movement against pathogen invasion and phosphorylation states of proteins involved in ABA, SA, calcium and ROS signaling, which may modulate the stomatal immune response. Stomatal openings represent a major route of pathogen entry into the plant, and plants have evolved mechanisms to regulate stomatal aperture as innate immune response against bacterial invasion. However, the mechanisms underlying stomatal immunity are not fully understood. Taking advantage of high-throughput liquid chromatography mass spectrometry (LC-MS), we performed label-free proteomic and phosphoproteomic analyses of enriched guard cells in response to a bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000. In total, 495 proteins and 1229 phosphoproteins were identified as differentially regulated. These proteins are involved in a variety of signaling pathways, including abscisic acid and salicylic acid hormone signaling, calcium and reactive oxygen species signaling. We also showed that dynamic changes of phosphoprotein WRKY transcription factors may play a crucial role in regulating stomata movement in plant immunity. The identified proteins/phosphoproteins and the pathways form interactive molecular networks to regulate stomatal immunity. This study has provided new insights into the multifaceted mechanisms of stomatal immunity. The differential proteins and phosphoproteins are potential targets for engineering or breeding of crops for enhanced pathogen defense.
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Affiliation(s)
- Qiuying Pang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, China
| | - Tong Zhang
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, USA
| | - Aiqin Zhang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, China
| | - Chuwei Lin
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, USA
| | - Wenwen Kong
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, USA
| | - Sixue Chen
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, USA.
- Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, USA.
- Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA.
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Wang Y, Afeworki Y, Geng S, Kanchupati P, Gu M, Martins C, Rude B, Tefera H, Kim Y, Ge X, Auger D, Chen S, Yang P, Hu T, Wu Y. Hydrotropism in the primary roots of maize. THE NEW PHYTOLOGIST 2020; 226:1796-1808. [PMID: 32020611 DOI: 10.1111/nph.16472] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 01/26/2020] [Indexed: 06/10/2023]
Abstract
Recent studies mainly in Arabidopsis have renewed interest and discussion in some of the key issues in hydrotropism of roots, such as the site of water sensing and the involvement of auxin. We examined hydrotropism in maize (Zea mays) primary roots. We determined the site of water sensing along the root using a nonintrusive method. Kinematic analysis was conducted to investigate spatial root elongation during hydrotropic response. Indole-3-acetic acid (IAA) and other hormones were quantified using LC-MS/MS. The transcriptome was analyzed using RNA sequencing. Main results: The very tip of the root is the most sensitive to the hydrostimulant. Hydrotropic bending involves coordinated adjustment of spatial cell elongation and cell flux. IAA redistribution occurred in maize roots, preceding hydrotropic bending. The redistribution is caused by a reduction of IAA content on the side facing a hydrostimulant, resulting in a higher IAA content on the dry side. Transcriptomic analysis of the elongation zone prior to bending identified IAA response and lignin synthesis/wall cross-linking as some of the key processes occurring during the early stages of hydrotropic response. We conclude that maize roots differ from Arabidopsis in the location of hydrostimulant sensing and the involvement of IAA redistribution.
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Affiliation(s)
- Yafang Wang
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
- College of Grassland Agriculture, Northwest A&F University, 712100, Yangling, China
| | - Yohannes Afeworki
- Department of Mathematics and Statistics, South Dakota State University, Brookings, SD, 57007, USA
| | - Sisi Geng
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
| | - Praveena Kanchupati
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Muyu Gu
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Chidi Martins
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Brady Rude
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Haileselassie Tefera
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Yongjun Kim
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Xijin Ge
- Department of Mathematics and Statistics, South Dakota State University, Brookings, SD, 57007, USA
| | - Donald Auger
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
| | - Sixue Chen
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
| | - Peizhi Yang
- College of Grassland Agriculture, Northwest A&F University, 712100, Yangling, China
| | - Tianming Hu
- College of Grassland Agriculture, Northwest A&F University, 712100, Yangling, China
| | - Yajun Wu
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
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Merlaen B, De Keyser E, Van Labeke MC. The jasmonic acid pathway, rather than abscisic acid, may partly explain contrasting stomatal responses in two strawberry cultivars under osmotic stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 151:21-33. [PMID: 32179469 DOI: 10.1016/j.plaphy.2020.02.041] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Revised: 02/02/2020] [Accepted: 02/26/2020] [Indexed: 05/15/2023]
Abstract
Drought is a major threat in agriculture and horticulture, including commercial strawberry production. Here, we compare hormonal regulation of a first-line drought stress response, namely stomatal closure, in two Fragaria x ananassa cultivars, known to differ in their drought stress phenotype. We show that the observed difference in xylem abscisic acid accumulation cannot explain the different stomatal responses under osmotic stress. Foliar abscisic acid accumulation cannot fully account for the stomatal behavior in one of both cultivars either. An indirect effect of abscisic acid on stomatal conductance via an impact on leaf hydraulic conductance, possibly mediated via aquaporins, as is recently proposed in literature, was not observed here. Next, we show that these two cultivars respond differently to jasmonic acid and one of its precursors. This difference in sensitivity of the jasmonates pathway between both cultivars may partly explain the different stomatal response. This study contributes to the understanding of the regulation of an important drought stress response in an economically important crop prone to water deficit stress.
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Affiliation(s)
- Britt Merlaen
- Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000, Gent, Belgium.
| | - Ellen De Keyser
- Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Caritasstraat 39, 9090, Melle, Belgium.
| | - Marie-Christine Van Labeke
- Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000, Gent, Belgium.
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He J, Zhang RX, Kim DS, Sun P, Liu H, Liu Z, Hetherington AM, Liang YK. ROS of Distinct Sources and Salicylic Acid Separate Elevated CO 2-Mediated Stomatal Movements in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2020; 11:542. [PMID: 32457781 PMCID: PMC7225777 DOI: 10.3389/fpls.2020.00542] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Accepted: 04/09/2020] [Indexed: 05/12/2023]
Abstract
Elevated CO2 (eCO2) often reduces leaf stomatal aperture and density thus impacts plant physiology and productivity. We have previously demonstrated that the Arabidopsis BIG protein distinguishes between the processes of eCO2-induced stomatal closure and eCO2-inhibited stomatal opening. However, the mechanistic basis of this action is not fully understood. Here we show that eCO2-elicited reactive oxygen species (ROS) production in big mutants was compromised in stomatal closure induction but not in stomatal opening inhibition. Pharmacological and genetic studies show that ROS generated by both NADPH oxidases and cell wall peroxidases contribute to eCO2-induced stomatal closure, whereas inhibition of light-induced stomatal opening by eCO2 may rely on the ROS derived from NADPH oxidases but not from cell wall peroxidases. As with JA and ABA, SA is required for eCO2-induced ROS generation and stomatal closure. In contrast, none of these three signals has a significant role in eCO2-inhibited stomatal opening, unveiling the distinct roles of plant hormonal signaling pathways in the induction of stomatal closure and the inhibition of stomatal opening by eCO2. In conclusion, this study adds SA to a list of plant hormones that together with ROS from distinct sources distinguish two branches of eCO2-mediated stomatal movements.
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Affiliation(s)
- Jingjing He
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
| | - Ruo-Xi Zhang
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
| | - Dae Sung Kim
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
| | - Peng Sun
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
| | - Honggang Liu
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
| | - Zhongming Liu
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
| | - Alistair M. Hetherington
- School of Biological Sciences, Life Sciences Building, University of Bristol, Bristol, United Kingdom
| | - Yun-Kuan Liang
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, China
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Lawrence SR, Gaitens M, Guan Q, Dufresne C, Chen S. S-Nitroso-Proteome Revealed in Stomatal Guard Cell Response to Flg22. Int J Mol Sci 2020; 21:ijms21051688. [PMID: 32121556 PMCID: PMC7084773 DOI: 10.3390/ijms21051688] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Revised: 02/28/2020] [Accepted: 02/28/2020] [Indexed: 02/07/2023] Open
Abstract
Nitric oxide (NO) plays an important role in stomata closure induced by environmental stimuli including pathogens. During pathogen challenge, nitric oxide (NO) acts as a second messenger in guard cell signaling networks to activate downstream responses leading to stomata closure. One means by which NO’s action is achieved is through the posttranslational modification of cysteine residue(s) of target proteins. Although the roles of NO have been well studied in plant tissues and seedlings, far less is known about NO signaling and, more specifically, protein S-nitrosylation (SNO) in stomatal guard cells. In this study, using iodoTMTRAQ quantitative proteomics technology, we analyzed changes in protein SNO modification in guard cells of reference plant Arabidopsis thaliana in response to flg22, an elicitor-active peptide derived from bacterial flagellin. A total of 41 SNO-modified peptides corresponding to 35 proteins were identified. The proteins cover a wide range of functions, including energy metabolism, transport, stress response, photosynthesis, and cell–cell communication. This study creates the first inventory of previously unknown NO responsive proteins in guard cell immune responses and establishes a foundation for future research toward understanding the molecular mechanisms and regulatory roles of SNO in stomata immunity against bacterial pathogens.
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Affiliation(s)
- Sheldon R. Lawrence
- Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32610, USA;
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL 32611, USA; (M.G.); (Q.G.)
| | - Meghan Gaitens
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL 32611, USA; (M.G.); (Q.G.)
| | - Qijie Guan
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL 32611, USA; (M.G.); (Q.G.)
| | - Craig Dufresne
- Thermo Fisher Scientific, 1400 Northpoint Parkway, West Palm Beach, FL 33407, USA;
| | - Sixue Chen
- Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32610, USA;
- Department of Biology, University of Florida Genetics Institute, Gainesville, FL 32611, USA; (M.G.); (Q.G.)
- Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL 32610, USA
- Correspondence:
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Zhu M, Geng S, Chakravorty D, Guan Q, Chen S, Assmann SM. Metabolomics of red-light-induced stomatal opening in Arabidopsis thaliana: Coupling with abscisic acid and jasmonic acid metabolism. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 101:1331-1348. [PMID: 31677315 DOI: 10.1111/tpj.14594] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Revised: 09/20/2019] [Accepted: 09/30/2019] [Indexed: 06/10/2023]
Abstract
Environmental stimuli-triggered stomatal movement is a key physiological process that regulates CO2 uptake and water loss in plants. Stomata are defined by pairs of guard cells that perceive and transduce external signals, leading to cellular volume changes and consequent stomatal aperture change. Within the visible light spectrum, red light induces stomatal opening in intact leaves. However, there has been debate regarding the extent to which red-light-induced stomatal opening arises from direct guard cell sensing of red light versus indirect responses as a result of red light influences on mesophyll photosynthesis. Here we identify conditions that result in red-light-stimulated stomatal opening in isolated epidermal peels and enlargement of protoplasts, firmly establishing a direct guard cell response to red light. We then employ metabolomics workflows utilizing gas chromatography mass spectrometry and liquid chromatography mass spectrometry for metabolite profiling and identification of Arabidopsis guard cell metabolic signatures in response to red light in the absence of the mesophyll. We quantified 223 metabolites in Arabidopsis guard cells, with 104 found to be red light responsive. These red-light-modulated metabolites participate in the tricarboxylic acid cycle, carbon balance, phytohormone biosynthesis and redox homeostasis. We next analyzed selected Arabidopsis mutants, and discovered that stomatal opening response to red light is correlated with a decrease in guard cell abscisic acid content and an increase in jasmonic acid content. The red-light-modulated guard cell metabolome reported here provides fundamental information concerning autonomous red light signaling pathways in guard cells.
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Affiliation(s)
- Mengmeng Zhu
- Department of Biology, Pennsylvania State University, University Park, PA, 16802, USA
| | - Sisi Geng
- The Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
| | - David Chakravorty
- Department of Biology, Pennsylvania State University, University Park, PA, 16802, USA
| | - Qijie Guan
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, 32610, USA
| | - Sixue Chen
- The Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, 32610, USA
- Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, 32610, USA
| | - Sarah M Assmann
- Department of Biology, Pennsylvania State University, University Park, PA, 16802, USA
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Zhang J, De-Oliveira-Ceciliato P, Takahashi Y, Schulze S, Dubeaux G, Hauser F, Azoulay-Shemer T, Tõldsepp K, Kollist H, Rappel WJ, Schroeder JI. Insights into the Molecular Mechanisms of CO 2-Mediated Regulation of Stomatal Movements. Curr Biol 2019; 28:R1356-R1363. [PMID: 30513335 DOI: 10.1016/j.cub.2018.10.015] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Plants must continually balance the influx of CO2 for photosynthesis against the loss of water vapor through stomatal pores in their leaves. This balance can be achieved by controlling the aperture of the stomatal pores in response to several environmental stimuli. Elevation in atmospheric [CO2] induces stomatal closure and further impacts leaf temperatures, plant growth and water-use efficiency, and global crop productivity. Here, we review recent advances in understanding CO2-perception mechanisms and CO2-mediated signal transduction in the regulation of stomatal movements, and we explore how these mechanisms are integrated with other signaling pathways in guard cells.
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Affiliation(s)
- Jingbo Zhang
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Paulo De-Oliveira-Ceciliato
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Yohei Takahashi
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Sebastian Schulze
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Guillaume Dubeaux
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Felix Hauser
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Tamar Azoulay-Shemer
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA
| | - Kadri Tõldsepp
- Institute of Technology, University of Tartu, Tartu 50411, Estonia
| | - Hannes Kollist
- Institute of Technology, University of Tartu, Tartu 50411, Estonia
| | - Wouter-Jan Rappel
- Physics Department, University of California San Diego, La Jolla, CA 92093, USA
| | - Julian I Schroeder
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California San Diego, La Jolla, CA 92093, USA.
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Rathi D, Pareek A, Zhang T, Pang Q, Chen S, Chakraborty S, Chakraborty N. Metabolite signatures of grasspea suspension-cultured cells illustrate the complexity of dehydration response. PLANTA 2019; 250:857-871. [PMID: 31203447 DOI: 10.1007/s00425-019-03211-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 06/06/2019] [Indexed: 06/09/2023]
Abstract
This represents the first report deciphering the dehydration response of suspension-cultured cells of a crop species, highlighting unique and shared pathways, and adaptive mechanisms via profiling of 330 metabolites. Grasspea, being a hardy legume, is an ideal model system to study stress tolerance mechanisms in plants. In this study, we investigated the dehydration-responsive metabolome in grasspea suspension-cultured cells (SCCs) to identify the unique and shared metabolites crucial in imparting dehydration tolerance. To reveal the dehydration-induced metabolite signatures, SCCs of grasspea were exposed to 10% PEG, followed by metabolomic profiling. Chromatographic separation by HPLC coupled with MRM-MS led to the identification of 330 metabolites, designated dehydration-responsive metabolites (DRMs), which belonged to 28 varied functional classes. The metabolome was found to be constituted by carboxylic acids (17%), amino acids (13.5%), flavonoids (10.9%) and plant growth regulators (10%), among others. Pathway enrichment analysis revealed predominance of metabolites involved in phytohormone biosynthesis, secondary metabolism and osmotic adjustment. Exogenous application of DRMs, arbutin and acetylcholine, displayed improved physiological status in stress-resilient grasspea as well as hypersensitive pea, while administration of lauric acid imparted detrimental effects. This represents the first report on stress-induced metabolomic landscape of a crop species via a suspension culture system, which would provide new insights into the molecular mechanism of stress responses and adaptation in crop species.
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Affiliation(s)
- Divya Rathi
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Akanksha Pareek
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Tong Zhang
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
| | - Qiuying Pang
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
| | - Sixue Chen
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA
- Proteomics and Mass Spectrometry Facility, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, 32610, USA
| | - Subhra Chakraborty
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Niranjan Chakraborty
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India.
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Zhang RX, Ge S, He J, Li S, Hao Y, Du H, Liu Z, Cheng R, Feng YQ, Xiong L, Li C, Hetherington AM, Liang YK. BIG regulates stomatal immunity and jasmonate production in Arabidopsis. THE NEW PHYTOLOGIST 2019; 222:335-348. [PMID: 30372534 DOI: 10.1111/nph.15568] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Accepted: 10/19/2018] [Indexed: 05/26/2023]
Abstract
Plants have evolved an array of responses that provide them with protection from attack by microorganisms and other predators. Many of these mechanisms depend upon interactions between the plant hormones jasmonate (JA) and ethylene (ET). However, the molecular basis of these interactions is insufficiently understood. Gene expression and physiological assays with mutants were performed to investigate the role of Arabidopsis BIG gene in stress responses. BIG transcription is downregulated by methyl JA (MeJA), necrotrophic infection or mechanical injury. BIG deficiency promotes JA-dependent gene induction, increases JA production but restricts the accumulation of both ET and salicylic acid. JA-induced anthocyanin accumulation and chlorophyll degradation are enhanced and stomatal immunity is impaired by BIG disruption. Bacteria- and lipopolysaccaride (LPS)-induced stomatal closure is reduced in BIG gene mutants, which are hyper-susceptible to microbial pathogens with different lifestyles, but these mutants are less attractive to phytophagous insects. Our results indicate that BIG negatively and positively regulate the MYC2 and ERF1 arms of the JA signalling pathway. BIG warrants recognition as a new and distinct regulator that regulates JA responses, the synergistic interactions of JA and ET, and other hormonal interactions that reconcile the growth and defense dilemma in Arabidopsis.
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Affiliation(s)
- Ruo-Xi Zhang
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Shengchao Ge
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Jingjing He
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Shuangchen Li
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Yanhong Hao
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan, 430072, China
| | - Hao Du
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant, Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Zhongming Liu
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Rui Cheng
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
| | - Yu-Qi Feng
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan, 430072, China
| | - Lizhong Xiong
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant, Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Chuanyou Li
- State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Alistair M Hetherington
- School of Biological Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK
| | - Yun-Kuan Liang
- State Key Laboratory of Hybrid Rice, Department of Plant Science, College of Life Sciences, Wuhan University, Wuhan, 430072, China
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Creydt M, Vuralhan-Eckert J, Fromm J, Fischer M. Effects of elevated CO 2 concentration on leaves and berries of black elder (Sambucus nigra) using UHPLC-ESI-QTOF-MS/MS and gas exchange measurements. JOURNAL OF PLANT PHYSIOLOGY 2019; 234-235:71-79. [PMID: 30669102 DOI: 10.1016/j.jplph.2019.01.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2018] [Revised: 12/02/2018] [Accepted: 01/07/2019] [Indexed: 06/09/2023]
Abstract
The effect of elevated CO2 concentration on leaves of black elder (Sambucus nigra) was investigated based on leaf gas exchange, chlorophyll content as well as on the analysis of the underlying metabolite profile of the fruits. The measurements were carried out once a month over a period of time of 4 months. The CO2 uptake rate, the transpiration rate and stomatal conductance were significantly higher in plants under ambient CO2, in comparison to plants grown under elevated CO2 concentrations. On the other hand, at the initial phase of the experiments, the photosynthesis rate was higher in CO2 loaded plants compared to plants grown under normal conditions. Remarkably, after about one month a habituation effect could be observed leading to a decrease of the photosynthetic efficiency approaching again the normal level. To understand the observed effects on a molecular level, non-targeted fingerprinting analysis was performed on the ripe elder berries using LC-qToF-ESI-MS(/MS). Differences in the composition of various phenols, triglycerides and PC (36:5) as well as a stigmasterole-derivate could be detected. In contrast, central metabolic pathways such as photosynthesis, the tricarboxylic acid cycle as well as the biosynthesis of essential amino acids obviously are not considerably affected.
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Affiliation(s)
- M Creydt
- Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg, Grindelallee 117, 20146, Hamburg, Germany
| | - J Vuralhan-Eckert
- Centre for Wood Science, University of Hamburg, Leuschnerstrasse 91d, 21031, Hamburg, Germany
| | - J Fromm
- Centre for Wood Science, University of Hamburg, Leuschnerstrasse 91d, 21031, Hamburg, Germany
| | - M Fischer
- Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg, Grindelallee 117, 20146, Hamburg, Germany.
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41
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Meng L, Zhang T, Geng S, Scott PB, Li H, Chen S. Comparative proteomics and metabolomics of JAZ7-mediated drought tolerance in Arabidopsis. J Proteomics 2019; 196:81-91. [DOI: 10.1016/j.jprot.2019.02.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Revised: 01/29/2019] [Accepted: 02/01/2019] [Indexed: 01/16/2023]
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Chhajed S, Misra BB, Tello N, Chen S. Chemodiversity of the Glucosinolate-Myrosinase System at the Single Cell Type Resolution. FRONTIERS IN PLANT SCIENCE 2019; 10:618. [PMID: 31164896 PMCID: PMC6536577 DOI: 10.3389/fpls.2019.00618] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 04/25/2019] [Indexed: 05/08/2023]
Abstract
Glucosinolates (GLSs) are a well-defined group of specialized metabolites, and like any other plant specialized metabolites, their presence does not directly affect the plant survival in terms of growth and development. However, specialized metabolites are essential to combat environmental stresses, such as pathogens and herbivores. GLSs naturally occur in many pungent plants in the order of Brassicales. To date, more than 200 different GLS structures have been characterized and their distribution differs from species to species. GLSs co-exist with classical and atypical myrosinases, which can hydrolyze GLS into an unstable aglycone thiohydroximate-O-sulfonate, which rearranges to produce different degradation products. GLSs, myrosinases, myrosinase interacting proteins, and GLS degradation products constitute the GLS-myrosinase (GM) system ("mustard oil bomb"). This review discusses the cellular and subcellular organization of the GM system, its chemodiversity, and functions in different cell types. Although there are many studies on the functions of GLSs and/or myrosinases at the tissue and whole plant levels, very few studies have focused on different single cell types. Single cell type studies will help to reveal specific functions that are missed at the tissue and organismal level. This review aims to highlight (1) recent progress in cellular and subcellular compartmentation of GLSs, myrosinases, and myrosinase interacting proteins; (2) molecular and biochemical diversity of GLSs and myrosinases; and (3) myrosinase interaction with its interacting proteins, and how it regulates the degradation of GLSs and thus the biological functions (e.g., plant defense against pathogens). Future prospects may include targeted approaches for engineering/breeding of plants and crops in the cell type-specific manner toward enhanced plant defense and nutrition.
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Affiliation(s)
- Shweta Chhajed
- Department of Biology, University of Florida, Gainesville, FL, United States
- Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Biswapriya B. Misra
- Department of Biology, University of Florida, Gainesville, FL, United States
- Section on Molecular Medicine, Department of Internal Medicine, Center for Precision Medicine, Wake Forest School of Medicine, Winston-Salem, NC, United States
| | - Nathalia Tello
- Department of Biology, University of Florida, Gainesville, FL, United States
- Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Sixue Chen
- Department of Biology, University of Florida, Gainesville, FL, United States
- Genetics Institute, University of Florida, Gainesville, FL, United States
- Plant Molecular and Cellular Biology, University of Florida, Gainesville, FL, United States
- Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, United States
- *Correspondence: Sixue Chen,
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Förster S, Schmidt LK, Kopic E, Anschütz U, Huang S, Schlücking K, Köster P, Waadt R, Larrieu A, Batistič O, Rodriguez PL, Grill E, Kudla J, Becker D. Wounding-Induced Stomatal Closure Requires Jasmonate-Mediated Activation of GORK K+ Channels by a Ca2+ Sensor-Kinase CBL1-CIPK5 Complex. Dev Cell 2019; 48:87-99.e6. [DOI: 10.1016/j.devcel.2018.11.014] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Revised: 05/28/2018] [Accepted: 11/07/2018] [Indexed: 02/07/2023]
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Lv X, Chen S, Wang Y. Advances in Understanding the Physiological and Molecular Responses of Sugar Beet to Salt Stress. FRONTIERS IN PLANT SCIENCE 2019; 10:1431. [PMID: 31781145 PMCID: PMC6851198 DOI: 10.3389/fpls.2019.01431] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2019] [Accepted: 10/15/2019] [Indexed: 05/04/2023]
Abstract
Soil salinity is a major environmental stress on crop growth and productivity. A better understanding of the molecular and physiological mechanisms underlying salt tolerance will facilitate efforts to improve crop performance under salinity. Sugar beet is considered to be a salt-tolerant crop, and it is therefore a good model for studying salt acclimation in crops. Recently, many determinants of salt tolerance and regulatory mechanisms have been studied by using physiological and 'omics approaches. This review provides an overview of recent research advances regarding sugar beet response and tolerance to salt stress. We summarize the physiological and molecular mechanisms involved, including maintenance of ion homeostasis, accumulation of osmotic-adjustment substances, and antioxidant regulation. We focus on progress in deciphering the mechanisms using 'omic technologies and describe the key candidate genes involved in sugar beet salt tolerance. Understanding the response and tolerance of sugar beet to salt stress will enable translational application to other crops and thus will have significant impacts on agricultural sustainability and global food security.
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Affiliation(s)
- Xiaoyan Lv
- School of Life Science and Technology, Harbin Institute of Technology, Harbin, China
- Key Laboratory of Sugar Beet Genetic Breeding of Heilongjiang Province, Heilongjiang University, Harbin, China
| | - Sixue Chen
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, United States
| | - Yuguang Wang
- Key Laboratory of Sugar Beet Genetic Breeding of Heilongjiang Province, Heilongjiang University, Harbin, China
- *Correspondence: Yuguang Wang;
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Misra BB, Reichman SM, Chen S. The guard cell ionome: Understanding the role of ions in guard cell functions. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2018; 146:50-62. [PMID: 30458181 DOI: 10.1016/j.pbiomolbio.2018.11.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 11/01/2018] [Accepted: 11/16/2018] [Indexed: 12/20/2022]
Abstract
The ionome is critical for plant growth, productivity, defense, and it eventually affects human food quantity and quality. Located on the leaf surface, stomatal guard cells are critical gatekeepers for water, gas, and pathogens. Insights form ionomics (metallomics) is imperative as we enter an omics-driven systems biology era where an understanding of guard cell function and physiology is advanced through efforts in genomics, transcriptomics, proteomics, and metabolomics. While the roles of major cations (K, Ca) and anions (Cl) are well known in guard cell function, the related physiology, movement and regulation of trace elements, metal ions, and heavy metals are poorly understood. The majority of the information on the role of trace elements in guard cells emanates from classical feeding experiments, field or in vitro fortification, micropropagation, and microscopy studies, while novel insights are available from limited metal ion transporter and ion channel studies. Given the rejuvenated and recent interest in the constantly changing ionome in plant mineral balance and eventually in human nutrition and health, we looked into the far from established guard cell ionome in lieu of the modern omics era of high throughput research endeavors. Newer technologies and tools i.e., high resolution mass spectrometry, advanced imaging, and phenomics are now available to delve into the guard cell ionomes. In this review, research efforts on guard cell ionomes were collated and categorized, and we highlight the underlying role of the largely unknown ionome in guard cell function towards a systems physiology understanding of plant health and productivity.
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Affiliation(s)
- Biswapriya B Misra
- Center for Precision Medicine, Department of Internal Medicine, Section on Molecular Medicine, Wake Forest School of Medicine, Medical Center Boulevard, Winston Salem, 27157, NC, USA; Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA.
| | - Suzie M Reichman
- School of Engineering, RMIT University, GPO Box 2476, Melbourne, 3001, Australia; Centre for Environmental Sustainability and Remediation, RMIT University, GPO Box 2476, Melbourne, 3001, Australia
| | - Sixue Chen
- Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, 32610, USA; Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, 32610, USA
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46
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Gamage D, Thompson M, Sutherland M, Hirotsu N, Makino A, Seneweera S. New insights into the cellular mechanisms of plant growth at elevated atmospheric carbon dioxide concentrations. PLANT, CELL & ENVIRONMENT 2018; 41:1233-1246. [PMID: 29611206 DOI: 10.1111/pce.13206] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 03/21/2018] [Accepted: 03/22/2018] [Indexed: 05/05/2023]
Abstract
Rising atmospheric carbon dioxide concentration ([CO2 ]) significantly influences plant growth, development, and biomass. Increased photosynthesis rate, together with lower stomatal conductance, has been identified as the key factors that stimulate plant growth at elevated [CO2 ] (e[CO2 ]). However, variations in photosynthesis and stomatal conductance alone cannot fully explain the dynamic changes in plant growth. Stimulation of photosynthesis at e[CO2 ] is always associated with post-photosynthetic secondary metabolic processes that include carbon and nitrogen metabolism, cell cycle functions, and hormonal regulation. Most studies have focused on photosynthesis and stomatal conductance in response to e[CO2 ], despite the emerging evidence of e[CO2 ]'s role in moderating secondary metabolism in plants. In this review, we briefly discuss the effects of e[CO2 ] on photosynthesis and stomatal conductance and then focus on the changes in other cellular mechanisms and growth processes at e[CO2 ] in relation to plant growth and development. Finally, knowledge gaps in understanding plant growth responses to e[CO2 ] have been identified with the aim of improving crop productivity under a CO2 rich atmosphere.
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Affiliation(s)
- Dananjali Gamage
- Centre for Crop Health, University of Southern Queensland, Toowoomba, Queensland, 4350, Australia
- Department of Agricultural Biology, Faculty of Agriculture, University of Ruhuna, Kamburupitiya, 81 100, Sri Lanka
| | - Michael Thompson
- Centre for Crop Health, University of Southern Queensland, Toowoomba, Queensland, 4350, Australia
| | - Mark Sutherland
- Centre for Crop Health, University of Southern Queensland, Toowoomba, Queensland, 4350, Australia
| | - Naoki Hirotsu
- Centre for Crop Health, University of Southern Queensland, Toowoomba, Queensland, 4350, Australia
- Faculty of Life Sciences, Toyo University, Oura-gun, Gunma, 374-0193, Japan
| | - Amane Makino
- Division of Life Sciences, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi, Sendai, 981-8555, Japan
| | - Saman Seneweera
- Centre for Crop Health, University of Southern Queensland, Toowoomba, Queensland, 4350, Australia
- Department of Agricultural Biology, Faculty of Agriculture, University of Ruhuna, Kamburupitiya, 81 100, Sri Lanka
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Bingol K. Recent Advances in Targeted and Untargeted Metabolomics by NMR and MS/NMR Methods. High Throughput 2018; 7:E9. [PMID: 29670016 PMCID: PMC6023270 DOI: 10.3390/ht7020009] [Citation(s) in RCA: 91] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 04/09/2018] [Accepted: 04/13/2018] [Indexed: 12/23/2022] Open
Abstract
Metabolomics has made significant progress in multiple fronts in the last 18 months. This minireview aimed to give an overview of these advancements in the light of their contribution to targeted and untargeted metabolomics. New computational approaches have emerged to overcome the manual absolute quantitation step of metabolites in one-dimensional (1D) ¹H nuclear magnetic resonance (NMR) spectra. This provides more consistency between inter-laboratory comparisons. Integration of two-dimensional (2D) NMR metabolomics databases under a unified web server allowed for very accurate identification of the metabolites that have been catalogued in these databases. For the remaining uncatalogued and unknown metabolites, new cheminformatics approaches have been developed by combining NMR and mass spectrometry (MS). These hybrid MS/NMR approaches accelerated the identification of unknowns in untargeted studies, and now they are allowing for profiling ever larger number of metabolites in application studies.
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Affiliation(s)
- Kerem Bingol
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
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Pang Q, Zhang T, Wang Y, Kong W, Guan Q, Yan X, Chen S. Metabolomics of Early Stage Plant Cell-Microbe Interaction Using Stable Isotope Labeling. FRONTIERS IN PLANT SCIENCE 2018; 9:760. [PMID: 29922325 PMCID: PMC5996122 DOI: 10.3389/fpls.2018.00760] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 05/17/2018] [Indexed: 05/02/2023]
Abstract
Metabolomics has been used in unraveling metabolites that play essential roles in plant-microbe (including pathogen) interactions. However, the problem of profiling a plant metabolome with potential contaminating metabolites from the coexisting microbes has been largely ignored. To address this problem, we implemented an effective stable isotope labeling approach, where the metabolome of a plant bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 was labeled with heavy isotopes. The labeled bacterial cells were incubated with Arabidopsis thaliana epidermal peels (EPs) with guard cells, and excessive bacterial cells were subsequently removed from the plant tissues by washing. The plant metabolites were characterized by liquid chromatography mass spectrometry using multiple reactions monitoring, which can differentiate plant and bacterial metabolites. Targeted metabolomic analysis suggested that Pst DC3000 infection may modulate stomatal movement by reprograming plant signaling and primary metabolic pathways. This proof-of-concept study demonstrates the utility of this strategy in differentiation of the plant and microbe metabolomes, and it has broad applications in studying metabolic interactions between microbes and other organisms.
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Affiliation(s)
- Qiuying Pang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Tong Zhang
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Yang Wang
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Wenwen Kong
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Qijie Guan
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, United States
| | - Xiufeng Yan
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
- *Correspondence: Xiufeng Yan, Sixue Chen,
| | - Sixue Chen
- Department of Biology, Genetics Institute, University of Florida, Gainesville, FL, United States
- Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, United States
- Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research (ICBR), University of Florida, Gainesville, FL, United States
- *Correspondence: Xiufeng Yan, Sixue Chen,
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Chen H, Wang B, Geng S, Arellano C, Chen S, Qu R. Effects of overexpression of jasmonic acid biosynthesis genes on nicotine accumulation in tobacco. PLANT DIRECT 2018; 2:e00036. [PMID: 31245684 PMCID: PMC6508566 DOI: 10.1002/pld3.36] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Revised: 12/26/2017] [Accepted: 12/28/2017] [Indexed: 05/26/2023]
Abstract
Nicotine is naturally synthesized in tobacco roots and accumulates in leaves as a defense compound against herbivory attack. Nicotine biosynthesis pathway has been extensively studied with major genes and enzymes being isolated and functionally characterized. However, the molecular regulation of nicotine synthesis has not been fully understood. The phytohormone jasmonic acid (JA) mediates many aspects of plant defense responses including nicotine biosynthesis. In this study, five key genes (AtLOX2, AtAOS, AtAOC2, AtOPR3, AtJAR1) involved in JA biosynthesis from Arabidopsis were individually overexpressed, and a JA-Ile hydrolysis-related gene, NtJIH1, was suppressed by RNAi approach, to understand their effects on nicotine accumulation in tobacco. Interestingly, while transgene expression was high, levels of JA-Ile (the biologically active form of JA) were often significantly reduced. Meanwhile, nicotine content in these transgenic plants did not increase. The research revealed a tightly controlled JA signaling pathway and a complicated regulatory network for nicotine biosynthesis by JA signaling.
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Affiliation(s)
- Hongxia Chen
- Department of Crop and Soil SciencesNorth Carolina State UniversityRaleighNCUSA
| | - Bingwu Wang
- Yunnan Academy of Tobacco Agricultural SciencesKunmingChina
| | - Sisi Geng
- Department of BiologyUniversity of FloridaGainesvilleFLUSA
| | | | - Sixue Chen
- Department of BiologyUniversity of FloridaGainesvilleFLUSA
| | - Rongda Qu
- Department of Crop and Soil SciencesNorth Carolina State UniversityRaleighNCUSA
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Metabolic Signatures in Response to Abscisic Acid (ABA) Treatment in Brassica napus Guard Cells Revealed by Metabolomics. Sci Rep 2017; 7:12875. [PMID: 28993661 PMCID: PMC5634414 DOI: 10.1038/s41598-017-13166-w] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Accepted: 09/19/2017] [Indexed: 11/08/2022] Open
Abstract
Drought can severely damage crops, resulting in major yield losses. During drought, vascular land plants conserve water via stomatal closure. Each stomate is bordered by a pair of guard cells that shrink in response to drought and the associated hormone abscisic acid (ABA). The activation of complex intracellular signaling networks underlies these responses. Therefore, analysis of guard cell metabolites is fundamental for elucidation of guard cell signaling pathways. Brassica napus is an important oilseed crop for human consumption and biodiesel production. Here, non-targeted metabolomics utilizing gas chromatography mass spectrometry (GC-MS/MS) and liquid chromatography mass spectrometry (LC-MS/MS) were employed for the first time to identify metabolic signatures in response to ABA in B. napus guard cell protoplasts. Metabolome profiling identified 390 distinct metabolites in B. napus guard cells, falling into diverse classes. Of these, 77 metabolites, comprising both primary and secondary metabolites were found to be significantly ABA responsive, including carbohydrates, fatty acids, glucosinolates, and flavonoids. Selected secondary metabolites, sinigrin, quercetin, campesterol, and sitosterol, were confirmed to regulate stomatal closure in Arabidopsis thaliana, B. napus or both species. Information derived from metabolite datasets can provide a blueprint for improvement of water use efficiency and drought tolerance in crops.
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