The transcription factor Capicua maintains the oocyte polarity in the panoistic ovary of the German cockroach

The establishment of the symmetry axis is crucial for the development of all organisms. In insects, this process begins early in oogenesis with the correct distribution of the mRNAs and proteins in the oocyte. One protein that plays a role in organizing this distribution is the transcription factor Capicua (Cic). Cic has been studied in the context of oogenesis and embryonic development in Drosophila melanogaster. It is maternally expressed, begins essential for establishing the dorsoventral axis, and functions as a transcriptional repressor. Although the Cic sequences are conserved across species, their function in other types of insect ovaries is still little known. We wondered whether the function of Cic in insects has been maintained through evolution despite the ovary type or if it has been modified in parallel to the ovary evolution. To address this, we studied the Cic function in a phylogenetically basal insect, the cockroach Blattella germanica, a species with panoistic ovaries. Our findings show that B. germanica Cic is essential for oocyte development and the maturation of ovarian follicles. A loss of Cic function leads to disrupted cytoskeletal organization, defects in anterior-posterior polarity, and compromised follicle integrity. The conservation and functional divergence of Cic across different species suggest evolutionary adaptations in the mechanisms of insect oogenesis.

Leaf Beetle Symbiotic Bacteria Degrade Chlorogenic Acid of Poplar Induced by Egg Deposition to Enhance Larval Survival

Insect symbiotic microbiota acting as a third-party force of plant-insect interactions, play a significant role in insect hosts tolerance to phytochemical defences. However, it remains unknown whether insect symbiotic bacteria can assist the host in degrading phytochemical defences induced by egg deposition. Plagiodera versicolora is a worldwide forest pest. Our study showed that P. versicolora egg deposition on Populus davidiana × Populus bolleana induced significant changes in the transcriptome and metabolome of leaves. Combined qRT-PCR and LC-MS quantitative analysis of metabolic pathways showed that the contents of chlorogenic acid and rutin were significantly increased upon egg deposition in poplar. Bioassays indicated that the high concentration of chlorogenic acid induced by egg deposition could significantly reduce the performance of germ-free larvae. Six symbiotic bacterial strains with potential ability to degrade chlorogenic acid were isolated and identified. Their degradation products did not affect larval survival either. In vivo inoculation assays showed that four of those symbiotic bacteria could assist in the degradation of high concentration of chlorogenic acid induced by egg deposition and improve the larval survival. Our study provides clear evidence that the insect symbiotic bacteria can mediate the tolerance of herbivorous insects against plant toxins induced by egg deposition.

PacBio-based de novo transcriptomics of the coconut rhinoceros beetle Oryctes rhinoceros identifies physiologically important full-length genes and sheds insights into the molecular relationship (chitin synthase) between Scarabaeidae (Coleoptera) and Hymenoptera

The sparser molecular data in non-model insects such as Oryctes rhinoceros prompted us to investigate and identify its physiologically important genes using the novel PacBio Iso-Seq Sequel II platform with single-molecule real-time (SMRT) technology. SMRT library was prepared from various tissues and sequenced. In total, 16,916,297 subreads clustered into 17,547 contigs which collapsed to form 8708 full-length sequences out of which 4352 functionally annotated transcripts were identified. Genes involved in innate immunity, growth and development, hormonal regulation, cellular process, peritrophic membrane, melanogenesis, integument, circulation, cuticle formation, glycan metabolism, etc., were identified. The transcripts' orthologues were identified predominantly in Coleoptera and Hymenoptera in which chitin synthase (CHS), toll, haemocytin, serine protease/limulus clotting factor c, vitellogenin and trehalose transporter exhibited significant molecular relationships between these two insect orders. Chitin synthase 8 (CHS-8) found in ant has been identified for the first time in the order Coleoptera. (O. rhinoceros) at the translational level and projected a potential to explore evolution (horizontal gene transfer) of CHS in insects. The findings will bridge the molecular data between the genome and transcriptome of O. rhinoceros, thus helping develop molecular targets for its control and management.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13205-025-04348-9.

On analogies in vertebrate and insect visual systems

Despite the large evolutionary distance between vertebrates and insects, the visual systems of these two taxa bear remarkable similarities that have been noted repeatedly, including by pioneering neuroanatomists such as Ramón y Cajal. Fuelled by the advent of transgenic approaches in neuroscience, studies of visual system anatomy and function in both vertebrates and insects have made dramatic progress during the past two decades, revealing even deeper analogies between their visual systems than were noted by earlier observers. Such across-taxa comparisons have tended to focus on either elementary motion detection or relatively peripheral layers of the visual systems. By contrast, the aims of this Review are to expand the scope of this comparison to pathways outside visual motion detection, as well as to deeper visual structures. To achieve these aims, we primarily discuss examples from recent work in larval zebrafish (Danio rerio) and the fruitfly (Drosophila melanogaster), a pair of genetically tractable model organisms with comparatively sized, small brains. In particular, we argue that the brains of both vertebrates and insects are equipped with third-order visual structures that specialize in shared behavioural tasks, including postural and course stabilization, approach and avoidance, and some other behaviours. These wider analogies between the two distant taxa highlight shared behavioural goals and associated evolutionary constraints and suggest that studies on vertebrate and insect vision have a lot to inspire each other.

Coevolution of Drosophila-type timeless with partner clock proteins

Drosophila-type timeless (dTIM) is a key clock protein in fruit flies, regulating rhythmicity and light-mediated entrainment. However, functional experiments indicate that its contribution to the clock differs in various insects. Therefore, we conducted a comprehensive phylogenetic analysis of dTIM across animals and dated its origin, gene duplications, and losses. We identified variable and conserved protein domains and pinpointed animal lineages that underwent the biggest changes in dTIM. While dTIM modifications are only mildly affected by changes in the PER protein, even the complete loss of PER in echinoderms had no impact on dTIM. However, changes in dTIM always co-occur with the loss of CRYPTOCHROMES or JETLAG. This is exemplified by the remarkably accelerated evolution of dTIM in phylloxera and aphids. Finally, alternative d-tim splicing, characteristic of Drosophila melanogaster temperature-dependent function, is conserved to some extent in Diptera, albeit with unique alterations. Altogether, this study pinpoints major changes that shaped dTIM evolution.

Biochemical basis of endogenous bioluminescent springtail Lobella sauteri (Collembola)

Bioluminescence plays important roles among animals in both intra- and inter-species communication. A variety of bioluminescent organisms inhabit soil environments, even in areas where light penetration is minimal. However, due to the lack of a model system to study underground bioluminescence, the biology and molecular mechanisms underlying this phenomenon remain largely unknown. Springtails (Collembola) are representative soil animals, and we recently identified Lobella sauteri (Neanuridae) as a bioluminescent species. L. sauteri can be maintained over multiple generations under laboratory conditions on a single food source, the plasmodium Fuligo septica, with a generation time of approximately 3 months. Bioluminescence was observed in all developmental stages of L. sauteri in laboratory-raised populations. The light emission exhibited periodic changes and increased before ecdysis, coinciding with the whitening of its tubercles. The bioluminescent reaction in vitro requires a small molecular (luciferin) fraction, an enzyme (luciferase) fraction, adenosine triphosphate (ATP), and Mg2+. Comparative transcriptomic and biochemical analyses suggest that L. sauteri employs a novel endogenous bioluminescent molecular mechanism. We propose that L. sauteri provides a valuable research opportunity for investigating novel bioluminescence systems and underground light-based communication.

Unexpectedly low recombination rates and presence of hotspots in termite genomes

Meiotic recombination is a fundamental evolutionary process that facilitates adaptation and the removal of deleterious genetic variation. Social Hymenoptera exhibit some of the highest recombination rates among metazoans, whereas high recombination rates have not been found among nonsocial species from this insect order. It is unknown whether elevated recombination rates are a ubiquitous feature of all social insects. In many metazoan taxa, recombination is mainly restricted to hotspots a few kilobases in length. However, little is known about the prevalence of recombination hotspots in insect genomes. Here we infer recombination rate and its fine-scale variation across the genomes of two social species from the insect order Blattodea: the termites Macrotermes bellicosus and Cryptotermes secundus We used linkage disequilibrium-based methods to infer recombination rate. We infer that recombination rates are close to 1 cM/Mb in both species, similar to the average metazoan rate. We also observe a highly punctate distribution of recombination in both termite genomes, indicative of the presence of recombination hotspots. We infer the presence of full-length PRDM9 genes in the genomes of both species, which suggests recombination hotspots in termites might be determined by PRDM9, as they are in mammals. We also find that recombination rates in genes are correlated with inferred levels of germline DNA methylation. The finding of low recombination rates in termites indicates that eusociality is not universally connected to elevated recombination rate. We speculate that the elevated recombination rates in social Hymenoptera are instead promoted by intense selection among haploid males.

Copepod phylogenomics supports Canuelloida as a valid order separate from Harpacticoida

Copepods are small crustaceans that are ubiquitous in aquatic environments. They are particularly abundant in marine and freshwater plankton, marine sediments, and as parasites or commensals of other aquatic organisms. Despite their abundance and importance, phylogenetic relationships among copepods are poorly resolved. The validity of higher-level taxa, including several orders, has continued to be controversial throughout the 21st century. This study has two main goals: first, to use phylogenomic data to assess relationships among the four major copepod orders: Calanoida, Cyclopoida, Harpacticoida, and Siphonostomatoida, which together include more than 98 % of copepod species diversity, and second, to test the validity of the recently proposed order Canuelloida. Towards these goals, we sampled 28 copepod transcriptomes and genomes spanning 20 families and 5 orders, including the first transcriptome of a representative of Canuelloida. We identified 2,527 single copy protein coding genes comprising 939,460 amino acid (aa) positions and 530,269 informative sites. All phylogenetic analyses support a monophyletic Podoplea (i.e., the superorder comprising all copepod orders except for Calanoida and Platycopioida) with Calanoida as its sister taxon. We find robust support across all methods for Canuelloida as a distinct order separate from the traditionally recognized Harpacticoida (Oligoarthra). Contrary to several recent studies of smaller sets of nuclear genes or mitochondrial genomes, we recover Cyclopoida and Harpacticoida as sister taxa and find that gene tree discordance analysis rejects the alternative topologies. Transcriptomic data are promising for resolving the backbone of the copepod phylogeny but collecting and sequencing the nearly 15,000 species of copepods, many of which are infrequently encountered and less than 1 mm in size, remains a major hurdle.

Defending and refining the Birch et al. (2021) precautionary framework for animal sentience

It is widely accepted that we ought to avoid taking excessive risks of causing gratuitous suffering. The practical implications of this truism, however, depend on how we understand what counts as an excessive risk. Precautionary frameworks help us decide when a risk exceeds the threshold for action, with the recent Birch et al. (2021) framework for assessing invertebrate sentience being one such example. The Birch et al. framework uses four neurobiological and four behavioural criteria to provide an evidence-based standard that can be used in determining when precautionary action to promote invertebrate welfare may be warranted. Our aim in this discussion paper is to provide a new motivation for the threshold approach that the Birch et al. framework represents while simultaneously identifying some possible revisions to the framework that can reduce false positives without abandoning the framework's precautionary objectives.

Characterization, functional exploration, and evolutionary analysis of mirtronic microRNAs reveal their origin in the invasive vector mosquito, Aedes albopictus

The mirtron pathway represents a distinct category of noncanonical microRNA (miRNA) biogenesis mechanisms. Current studies suggest that the mirtron pathway may be widely prevalent across various taxa, including animals and plants, but investigation of this pathway has focused mainly on mammals, particularly humans, and the biological functions and emerging roles of several mirtrons in human diseases have been elucidated. In the context of insects, mirtrons have only been comprehensively characterized and preliminarily functionally analyzed in Drosophila. The Asian tiger mosquito, Aedes albopictus, is a highly invasive species and an important vector of arbovirus transmission to humans. Although canonical miRNA function has been studied in depth in mosquitoes, the role of mirtrons in this species remains to be revealed. In this study, we identified and validated 2 novel conventional mirtrons in Ae. albopictus that are precursors of miR-11900 and miR-11893. Mirtronic miRNA biogenesis depends on the splicing of introns and cleavage by Dicer but does not necessarily correlate with intron location in host genes. The molecular evolution of mirtrons was analyzed using methods based on host genes and their exon‒intron architecture; the results indicate that mirtronic miRNAs are relatively young and that they may have appeared in Culicinae after the Anophelinae and Culicinae diverged. According to small RNA sequencing (RNA-seq) and RNA-seq data on post-mirtronic miRNA overexpression, mosquito mirtronic miRNAs are present in low abundance, and the absence of typical target genes in Ae. albopictus suggests they are not involved in post-transcriptional gene regulation. Overall, our results indicate that the emergence of 2 mirtrons in Ae. albopictus is likely due to the formation of Dicer-recognized secondary structures during the evolution of the intron sequence; these structures are similar to byproducts processed by Dicer, and their abundance is controlled by an alternative adventitious mirtron emergence-dependent mechanism. Our study identifies for the 1st time mirtrons in insect species distinct from Drosophila melanogaster, provides new insights into mirtron evolution, and provides a reference for the functional analysis of mirtrons.

Diversity, antibacterial and phytotoxic activities of intestinal fungi from Epitheca bimaculata

Insect gut fungi, as specialized microorganisms, are a significant source of bioactive compounds. However, there is currently no systematic research on the diversity of gut fungi in Epitheca bimaculata and their bioactive secondary metabolites. A total of 54 strains of gut fungi were isolated and purified from the gut of E. bimaculata using 12 different isolation media. The identification results revealed that these fungal strains were distributed across seven classes (Agaricomycetes, Cystobasidiomycetes, Eurotiomycetes, Dothideomycetes, Sordariomycetes, Saccharomycetes, and Zygomycetes) in 17 genera. The dominant genera were Irpex, Cladosporium, Penicillium, Mucor, and Talaromyces, with isolation frequencies of 14.81%, 12.96%, 12.96%, 11.11%, and 9.25%, respectively. Antibacterial tests showed that six strains extracts exhibited inhibitory activity against at least one of the tested bacteria (Staphylococcus aureus, Micrococcus tetragenus, Escherichia coli, and Pseudomonas syringae pv. actinidiae). Phytotoxic tests indicated that strains QTU-39, QTU-22, QTU-9, QTU-41, QTU-37, QTU-28, and QTU-25 showed strong phytotoxic activity against Echinochloa crusgalli with the inhibition rate of exceeding 93.5%. Seven monomer compounds, including citrinin (1), emodin (2), citreorosein (3), 8-hydroxy-6-methyl-9-oxo-9 H-xanthene-1-carboxylic acid methyl ester (4), ergosterol (5), rubratoxin B (6), and erythrol (7), and two compounds, including flufuran (8) and 4-N-butylpyridine-2-carboxylic acid (9) were isolated from Penicillium sp. QTU-25 and Pestalotiopsis sp. QTU-28, respectively. Among these, compound 1 exhibited strong antibacterial activity against four pathogenic bacteria (S. aureus, M. tetragenus, E. coli, and P. syringae pv. actinidiae), with the IZD of 20.0, 18.0, 22.3, 24.1 mm, which were equal to those of positive gentamicin sulfate with the IZD of 25.7, 22.7, 27.6, 24.6 mm, respectively. Compound 9 also exhibited strong antibacterial activity against S. aureus, M. tetragenus, E. coli, and P. syringae pv. actinidiae, with the IZD of 14.3, 17.3, 13.3, and 21.1 mm, respectively. Furthermore, compounds 1 and 6 exhibited strong phytotoxic activity against E. crusgalli and Abutilon theophrasti with an inhibition rate of 97.4% and 87.4% at a concentration of 100 µg/mL, respectively. In conclusion, the fungi isolated from the gut of E. bimaculata exhibited significant microbial diversity, representing a promising natural source of antibacterial and herbicidal compounds.

Morpho-Molecular Discordance and Cryptic Diversity in Jumping Bristletails: A Mitogenomic Analysis of Pedetontus silvestrii (Insecta: Archaeognatha: Machilidae)

Archaeognatha (bristletails) represent an evolutionarily significant but understudied insect group. Notably, the morphological identification method proposed by Mendes for Archaeognatha has certain limitations, which may lead to the underestimation or misidentification of some cryptic species. To address this issue, we employed an integrated strategy that combines morphological and molecular identification methods. Therefore, this study aimed to (1) identify cryptic diversity within Pedetontus silvestrii using mitogenomic data; (2) clarify phylogenetic relationships among Archaeognatha lineages; and (3) estimate divergence times for key taxonomic splits. We analyzed mitochondrial genomes from six P. silvestrii populations (Liaoning, Jilin, and Hebei Provinces) alongside 14 published Archaeognatha genomes. Key findings include the following: (1) Integrative analyses of genetic distances, phylogenetic reconstruction, bPTP-based molecular species delimitation, and divergence time estimation collectively revealed four evolutionarily distinct lineages within P. silvestrii. (2) Machilidae and Machilinae were non-monophyletic, whereas Petrobiellinae showed close affinity to Meinertellidae. (3) Archaeognatha originated ~301.19 Mya (Late Carboniferous); the Machilinae-Petrobiinae split occurred approximately 153.99 Mya (Jurassic). This study underscores the critical importance of mitogenomic analysis in elucidating cryptic biodiversity, while emphasizing the necessity of integrating morphological identification with molecular characterization for comprehensive species delineation in future taxonomic investigations.

Small animals with unique chemistry - the natural product chemistry of Collembola

Covering up to September 2024Collembola, commonly known as springtails, are abundant and important members of soil ecosystems. Due to their small size and hidden life, not much is known about their secondary metabolites. This chemistry is remarkably different from that of insects, with which they share a common ancestor, although they diverged already around 450 mya. Here we describe what is known so far, mainly compounds for chemical defence and cuticular lipids, as well as chemical signals. The uniqueness of the structures found is striking, many of which are not known from other natural sources. These include polychlorinated benzopyranones, small alkaloids, hetero-substituted aromatic compounds, and a diverse terpene chemistry, including highly branched compounds.

Unbiased anchors for reliable genome-wide synteny detection

Orthology inference lies at the foundation of comparative genomics research. The correct identification of loci which descended from a common ancestral sequence is not only complicated by sequence divergence but also duplication and other genome rearrangements. The conservation of gene order, i.e. synteny, is used in conjunction with sequence similarity as an additional factor for orthology determination. Current approaches, however, rely on genome annotations and are therefore limited. Here we present an annotation-free approach and compare it to synteny analysis with annotations. We find that our approach works better in closely related genomes whereas there is a better performance with annotations for more distantly related genomes. Overall, the presented algorithm offers a useful alternative to annotation-based methods and can outperform them in many cases.

Ancient divergent evolution of specialized swimming modes in aquatic beetles

We document two profoundly different specialized swimming modes in two ancient lineages of water scavenger beetles (Hydrophilidae): (i) the upside-down swimming using middle legs in the species-poor Amphiops and (ii) the dorsal-up swimming using middle and hind legs in the species-diverse lineage of all other actively swimming taxa, including Berosus analysed here. Both lineages share a unique modification of the mesofurca supporting the leg swimming movements, indicating a single origin of swimming. By behavioural experiments and biomechanical analyses, we reveal that the swimming of Amphiops is optimized for high manoeuvrability, whereas that of Berosus for speed and acceleration. Both swimming modes differ in the form of the meso- and metathoracic skeleton and leg musculature, excluding the possibility that one is derived from the other. Behavioural experiments indicate that both modes are adaptive morpho-functional peaks and that intermediate modes are suboptimal. This aligns with the phylogeny-based model comparison that indicates that both swimming modes have evolved from an ancestral swimming lost in modern beetles. The multi-method approach helps us to reconstruct ancient behaviour and identify trade-offs that shaped the evolution of lifestyles in Mesozoic aquatic beetles.

A global overview of insect-fern interactions and its ecological trends

Historically, ferns have been described as underutilized by insects. However, studies have shown a diversity of insects interacting with ferns, although the evolutionary and ecological drivers of these interactions are still to be untangled. To fill these gaps, we compiled more than 100 yr of global data on insect-fern interactions from the literature comprising 374 fern and 649 insect species. With this database we assessed how fern trophic specialization, phylogenetic relationships and climate have shaped their interactions with insects. Our findings showed that interactions between ferns and insects can be explained by the phylogenetic relations among them. We observed that insect orders part of the Endopterygota clade tend to interact with similar fern species, which might be a result of the inheritance of Endopterygota ancestors probably due to phylogenetic niche conservationism. Under an ecological context, fern specialization increased with temperature, precipitation, and climatic stability. Our results show that climate might be one of the main factors explaining the spatial variation of insect-fern interactions, postulate also supported by the observed phylogenetic clustering of the studied ferns species. Our study highlights the intricate and multifaceted nature of insect-fern interactions, where evolutionary history and ecological factors converge to shape these relationships.

Marchantia polymorpha Defense Against Snail Herbivory

During the course of evolution, higher plants have developed efficient strategies to cope with herbivory from arthropods. Upon perception of herbivore-derived cues, the jasmonic acid (JA) signaling pathway is activated and triggers the expression of defense genes. The first land plants that arose ca. 500 Mya were bryophytes, including liverworts, and fossil records indicate that they were also exposed to herbivore pressure. Interestingly, recent studies showed that the liverwort Marchantia polymorpha contains a functional JA pathway that protects against insect feeding. However, since the appearance of insects is estimated to have occurred several million years after that of bryophytes, we hypothesized that this pathway could have been used to fend off contemporaneous gastropod feeders. Here, we challenged M. polymorpha with the land snail Helix aspersa and found that neonates grew significantly bigger on Mpcoi1, a mutant in the JA pathway, than on wild-type plants. This finding demonstrates that JA-dependent defenses in a liverwort are effective against gastropod herbivory and suggests that this feeding group constitutes an additional selection pressure that may have arisen early during land plant evolution.

Functional Divergence of Plant-Derived Thaumatin-Like Protein Genes in Two Closely Related Whitefly Species

The recent discovery that various insects have acquired functional genes through horizontal gene transfer (HGT) has prompted numerous studies into this puzzling and fascinating phenomenon. So far, horizontally transferred genes are found to be functionally conserved and largely retained their ancestral functions. It evidently has not yet been considered that horizontally transferred genes may evolve and can contribute to divergence between species. Here, it is first showed that the genomes of the two widespread and agriculturally important whiteflies Trialeurodes vaporariorum and Bemisia tabaci both contain a plant-derived thaumatin-like protein (TLP) gene, but with highly distinct functions in these closely related pests. In T. vaporariorum, TLP has maintained a function similar to that of the plant donor, acting as an antimicrobial protein to resist fungal infection; but in sharp contrast, in B. tabaci, TLP has evolved into an effector that suppresses plant defense responses. These findings reveal an as-yet undescribed scenario of cross-species functional differentiation of horizontally transferred genes and suggest that the HGT-mediated evolutionary novelty can contribute to ecotypic divergence and even speciation.

Robustness of divergence time estimation despite gene tree estimation error: a case study of fireflies (Coleoptera: Lampyridae)

Genomic data have become ubiquitous in phylogenomic studies, including divergence time estimation, but provide new challenges. These challenges include, among others, biological gene tree discordance, methodological gene tree estimation error, and computational limitations on performing full Bayesian inference under complex models. In this study, we use a recently published firefly (Coleoptera: Lampyridae) anchored hybrid enrichment data set (AHE; 436 loci for 88 Lampyridae species and 10 outgroup species) as a case study to explore gene tree estimation error and the robustness of divergence time estimation. First, we explored the amount of model violation using posterior predictive simulations because model violations are likely to bias phylogenetic inferences and produce gene tree estimation error. We specifically focused on missing data (either uniformly distributed or systematically) and the distribution of highly variable and conserved sites (either uniformly distributed or clustered). Our assessment of model adequacy showed that standard phylogenetic substitution models are not adequate for any of the 436 AHE loci. We tested if the model violations and alignment errors resulted indeed in gene tree estimation error by comparing the observed gene tree discordance to simulated gene tree discordance under the multispecies coalescent model. Thus, we show that the inferred gene tree discordance is not only due to biological mechanism but primarily due to inference errors. Lastly, we explored if divergence time estimation is robust despite the observed gene tree estimation error. We selected four subsets of the full AHE data set, concatenated each subset and performed a Bayesian relaxed clock divergence estimation in RevBayes. The estimated divergence times overlapped for all nodes that are shared between the topologies. Thus, divergence time estimation is robust using any well selected data subset as long as the topology inference is robust.

The transition to flying insects: lessons from evo-devo and fossils

Insects are the only arthropod group to achieve powered flight, which facilitated their explosive radiation on land. It remains a significant challenge to understand the evolutionary transition from nonflying (apterygote) to flying (pterygote) insects due to the large gap in the fossil record. Under such a situation, ontogenic information has historically been used to compensate for fossil evidence. Recent evo-devo studies support and refine a paleontology-based classical hypothesis that an ancestral exite incorporated into the body wall contributed to the origin of insect wings. The modern hypothesis locates an ancestral precoxa leg segment with an exite within the hexapod lateral tergum, reframing the long-standing debate on the insect wing origin. A current focus is on the contributions of the incorporated exite homolog and surrounding tissues, such as the pleuron and the medial bona fide tergum, to wing evolution. In parallel, recent analyses of Paleozoic fossils have confirmed thoracic and abdominal lateral body outgrowths as transitional wing precursors and suggested their possible role as respiratory organs in aquatic or semiaquatic environments. These recent studies have revised our understanding of the transition to flying insects. This review highlights recent progress in both evo-devo and paleontology, and discusses future challenges, including the evolution of metamorphic development.

Phyloproteomics reveals conserved patterns of axonemal dynein methylation across the motile ciliated eukaryotes

Axonemal dynein assembly occurs in the cytoplasm and numerous cytosolic factors are specifically required for this process. Recently, one factor (DNAAF3/PF22) was identified as a methyltransferase. Examination of Chlamydomonas dyneins found they are methylated at substoichiometric levels on multiple sites, including Lys and Arg residues in several of the nucleotide-binding domains and on the microtubule-binding region. Given the highly conserved nature of axonemal dyneins, one key question is whether methylation happens only in dyneins from the chlorophyte algae, or whether these modifications occur more broadly throughout the motile ciliated eukaryotes. Here we take a phyloproteomic approach and examine dynein methylation in a wide range of eukaryotic organisms bearing motile cilia. We find unambiguous evidence for methylation of axonemal dyneins in alveolates, chlorophytes, trypanosomes, and a broad range of metazoans. Intriguingly, we were unable to identify a single instance of methylation on Drosophila melanogaster sperm dyneins even though dipterans express a Dnaaf3 orthologue, or in spermatozoids of the fern Ceratopteris, which assembles inner arms but lacks both outer arm dyneins and DNAAF3. Thus, methylation of axonemal dyneins has been broadly conserved in most eukaryotic groups and has the potential to variably modify the function of these motors.

MAFin: motif detection in multiple alignment files

MOTIVATION

Whole Genome and Proteome Alignments, represented by the multiple alignment file format, have become a standard approach in comparative genomics and proteomics. These often require identifying conserved motifs, which is crucial for understanding functional and evolutionary relationships. However, current approaches lack a direct method for motif detection within MAF files. We present MAFin, a novel tool that enables efficient motif detection and conservation analysis in MAF files to address this gap, streamlining genomic and proteomic research.

RESULTS

We developed MAFin, the first motif detection tool for Multiple Alignment Format files. MAFin enables the multithreaded search of conserved motifs using three approaches: (i) using user-specified k-mers to search the sequences. (ii) with regular expressions, in which case one or more patterns are searched, and (iii) with predefined Position Weight Matrices. Once the motif has been found, MAFin detects the motif instances and calculates the conservation across the aligned sequences. MAFin also calculates a conservation percentage, which provides information about the conservation levels of each motif across the aligned sequences, based on the number of matches relative to the length of the motif. A set of statistics enables the interpretation of each motif's conservation level, and the detected motifs are exported in JSON and CSV files for downstream analyses.

AVAILABILITY AND IMPLEMENTATION

MAFin is offered as a Python package under the GPL license as a multi-platform application and is available at: https://github.com/Georgakopoulos-Soares-lab/MAFin.

Origin and function of beneficial bacterial symbioses in insects

Beneficial bacterial symbionts are widespread in insects and affect the fitness of their hosts by contributing to nutrition, digestion, detoxification, communication or protection from abiotic stressors or natural enemies. Decades of research have formed our understanding of the identity, localization and functional benefits of insect symbionts, and the increasing availability of genome sequences spanning a diversity of pathogens and beneficial bacteria now enables comparative approaches of their metabolic features and their phylogenetic affiliations, shedding new light on the origin and function of beneficial symbioses in insects. In this Review, we explore the symbionts' metabolic traits that can provide benefits to insect hosts and discuss the evolutionary paths to the formation of host-beneficial symbiotic associations. Phylogenetic analyses and molecular studies reveal that extracellular symbioses colonizing cuticular organs or the digestive tract evolved from a broad diversity of bacterial partners, whereas intracellular beneficial symbionts appear to be restricted to a limited number of lineages within the Gram-negative bacteria and probably originated from parasitic ancestors. To unravel the general principles underlying host-symbiont interactions and recapitulate the early evolutionary steps leading towards beneficial symbioses, future efforts should aim to establish more symbiotic systems that are amenable to genetic manipulation and experimental evolution.

Unveiling the diversity of gut microbes in green lacewings (Chrysopidae: Neuroptera) and their role as protagonist in nutrition

Green lacewings (Chrysopidae; Neuroptera) plays a crucial role as predators against insect pests in diverse cropping systems. Larval chrysopids are predatory on mealybugs, aphids, scales, whiteflies, mites and eggs of many arthropods. Adults are palynoglycophagous and feed on nectar, pollen, and honeydew secreted by aphids. Many insects cannot synthesize necessary vitamins and amino acids on their own and depend on gut microbes. Microbes associated with chrysopid gut help them with balanced nutrition and ecological fitness to withstand extreme stresses, especially adult gut microbiota, which constitutes an indispensable part of nutrients in addition to reproduction. Except for yeast, microbes such as bacteria in the chrysopid larval and adult gut have not been extensively studied. This review aims to seek a comprehensive overview of the gut microbes present in the chrysopids and their role in improving the fitness of chrysopids through adequate nutrition. This will pave the way for further research on understanding the microbe-mediated metabolic activities, their role in toxin production, and the development of probiotic feed from the novel gut microbiota for improving the productivity of laboratory-reared chrysopids used in augmentative biological control of major pests in agricultural ecosystems.

The loss of the urea cycle and ornithine metabolism in different insect orders: An omics approach

Previous studies suggest that some insects require dietary arginine because they cannot synthesize this amino acid through the urea cycle. To determine whether this finding applies to all insects and what its metabolic implications are, we analysed the conservation of 20 genes involved in arginine biosynthesis and metabolism in the genomes of 150 species from 11 taxonomic orders. Our results showed that no insect can synthesize arginine via the urea cycle, as ornithine carbamoyltransferase is absent from all genomes analysed. While we found losses in other genes encoding urea cycle enzymes, nitric oxide synthase (NOS) was conserved across orders. However, the citrulline produced by NOS cannot be converted back to arginine in several insects due to the loss of argininosuccinate synthase and argininosuccinate lyase genes. Despite the inability to synthesize arginine, all insects (except some Hemiptera) can degrade it to ornithine and urea, as the arginase (ARG) gene is conserved across the orders analysed. For some Hemiptera that have lost ARG, we investigated how these insects produce or metabolize ornithine. Our results show that the genes for converting ornithine to glutamate, proline and putrescine are conserved across orders. However, while all insects have enzymes to synthesize putrescine and spermidine, some lack the ability to produce spermine due to the absence of the spermine synthase gene. Taken together, our results show that the loss of the urea cycle has led to significant changes in the pathways by which insects metabolize and recover arginine, which is particularly important for the diversification of hemipterans.

The first detailed morphological treatment of a Cretaceous psocid and the character evolution of Trogiomorpha (Insecta: Psocodea)

While new fossil psocid taxa are described every year, the morphology is generally not studied and documented in sufficient detail, limiting our understanding of the character evolution in this order. A new fossil species of the genus Psyllipsocus from mid-Cretaceous Kachin amber is described and its morphology reconstructed in detail using synchrotron-radiation micro-computed tomography (SR-μ-CT). We present the first cybertype of a Cretaceous fossil psocid. We also describe and discuss the putative evolution of previously unrecognized and underestimated exoskeletal characters for the suborder Trogiomorpha. Additionally, using our new observations, we critically evaluate the phylogeny of Trogiomorpha and the character evolution in this group. We also present a modified character matrix which we analyze using Bayesian inference and parsimony. Based on our results and previous studies we propose monophyletic Trogiomorpha s.l. (incl. †Brachyantennum) and Trogiomorpha s. str. (possibly incl. †Cormopsocidae), the latter comprising Prionoglarididae and monophyletic Spinaprocta. Spinaprocta contain Atropetae and Psyllipsocetae (incl. Psyllipsocus) as sister taxa. Some relationships on the genus level in Trogiomorpha are still strongly disputed and unclear. Here, we synonymize the extinct monotypic genus †Khatangia with Psyllipsocus and discuss the systematic position of †Sinopsyllipsocus, †Parapsyllipsocus, †Empheriopsis and †Concavapsocus. A key for all extinct species of Psyllipsocidae is provided.

Genome-wide analyses provide insights into genetic variation, phylo- and co-phylogenetic relationships, and biogeography of the entomopathogenic nematode genus Heterorhabditis

Multigene, genus-wide phylogenetic studies have uncovered the limited taxonomic resolution power of commonly used gene markers, particularly of rRNA genes, to discriminate closely related species of the nematode genus Heterorhabditis. In addition, conflicting tree topologies are often obtained using the different gene markers, which limits our understanding of the phylo- and co-phylogenetic relationships and biogeography of the entomopathogenic nematode genus Heterorhabditis. Here we carried out phylogenomic reconstructions using whole nuclear and mitochondrial genomes, and whole ribosomal operon sequences, as well as multiple phylogenetic reconstructions using various single nuclear and mitochondrial genes. Using the inferred phylogenies, we then investigated co-phylogenetic relationships between Heterorhabditis and their Photorhabdus bacterial symbionts and biogeographical patterns. Robust, well-resolved, and highly congruent phylogenetic relationships were reconstructed using both whole nuclear and mitochondrial genomes. Similarly, whole ribosomal operon sequences proved valuable for phylogenomic reconstructions, though they have limited value to discriminate closely related species. In addition, two mitochondrial genes, the cytochrome c oxidase subunit I (cox-1) and the NADH dehydrogenase subunit 4 (nad-4), and two housekeeping genes, the fanconi-associated nuclease 1 (fan-1) and the serine/threonine-protein phosphatase 4 regulatory subunit 1 (ppfr-1), provided the most robust phylogenetic reconstructions compared to other individual genes. According to our findings, whole nuclear and/or mitochondrial genomes are strongly recommended for reconstructing phylogenetic relationships of the genus Heterorhabditis. If whole nuclear and/or mitochondrial genomes are unavailable, a combination of nuclear and mitochondrial genes can be used as an alternative. Under these circumstances, sequences of multiple conspecific isolates in a genus-wide phylogenetic context should be analyzed to avoid artefactual species over-splitting driven by the high intraspecific sequence divergence of mitochondrial genes and to avoid artefactual species lumping driven by the low interspecific sequence divergence of some nuclear genes. On the other hand, we observed that the genera Heterorhabditis and Photorhabdus exhibit diverse biogeographic patterns, ranging from cosmopolitan species to potentially endemic species, and show high phylogenetic congruence, although host switches have also occurred. Our study contributes to a better understanding of the biodiversity and phylo- and co-phylogenetic relationships of an important group of biological control agents and advances our efforts to develop more tools that are compatible with sustainable and eco-friendly agricultural practices.

Multidimensionality of tree communities structure host-parasitoid networks and their phylogenetic composition

Environmental factors can influence ecological networks, but these effects are poorly understood in the realm of the phylogeny of host-parasitoid interactions. Especially, we lack a comprehensive understanding of the ways that biotic factors, including plant species richness, overall community phylogenetic and functional composition of consumers, and abiotic factors such as microclimate, determine host-parasitoid network structure and host-parasitoid community dynamics. To address this, we leveraged a 5-year dataset of trap-nesting bees and wasps and their parasitoids collected in a highly controlled, large-scale subtropical tree biodiversity experiment. We tested for effects of tree species richness, tree phylogenetic, and functional diversity, and species and phylogenetic composition on species and phylogenetic diversity of both host and parasitoid communities and the composition of their interaction networks. We show that multiple components of tree diversity and canopy cover impacted both, species and phylogenetic composition of hosts and parasitoids. Generally, phylogenetic associations between hosts and parasitoids reflected nonrandomly structured interactions between phylogenetic trees of hosts and parasitoids. Further, host-parasitoid network structure was influenced by tree species richness, tree phylogenetic diversity, and canopy cover. Our study indicates that the composition of higher trophic levels and corresponding interaction networks are determined by plant diversity and canopy cover, especially via trophic links in species-rich ecosystems.

Phylogenetic relationships and divergence times of Odonata inferred from mitochondrial genome

Understanding the origin and evolutionary history of Odonata are crucial, as they represent central members of the first winged lineages. Here, we assembled the largest mitogenome dataset to date, comprising 143 mitogenomes representing three suborders, 18 families, of which 53 mitogenomes were newly sequenced. Phylogenetic inferences demonstrate that the mitogenome is a powerful tool for resolving lower-level divergence within Odonata, and it falls short in addressing higher-level relationships like suborder, superfamily, and interfamily classifications. The evolutionary history of Odonata was reconstructed by incorporating 11 fossil records, estimating the origin of Odonata occurred in the Jurassic, with the Cretaceous emerging as a critical period for the initial radiation of main Odonata lineages. Furthermore, we employed fossil calibration strategies from various studies to calibrate our analyses, enabling the investigation of mito-nuclear discordance patterns in divergence time inferences. Our results revealed significant differences in divergence time estimates inferred solely from mitochondrial or nuclear data within Odonata, particularly pronounced when using older upper bounds values for fossils.

The role of Hox genes in shaping embryonic external morphology of the primitive insect Thermobia domestica (Zygentoma)

Insects represent one of the most evolutionarily successful groups, with their diversity hypothesized to be related to the regulatory roles of Hox genes, a set of related genes encoding homeodomain transcription factors determining the identity of segments along the anterior-posterior axis of the embryo. However, functional insights into the roles of Hox genes in primitive ametabolous insects, which represent the critical transition from aquatic crustaceans to winged insects, have been limited. In this study, we identified complete protein-coding sequences of 10 Hox genes in the Zygentoma Thermobia domestica, and applied clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR-associated nuclease 9 (Cas 9) mediated gene knockout (KO) to decipher their functions. We found that the roles of pb, Dfd, and Scr are vital in specifying the appendages of the head in T. domestica, and these roles are relatively conserved in crustaceans and winged insects. Antp is essential for the development of the prothorax segment and the first pair of legs in T. domestica. Ubx and abd-A fully repress appendage development in the abdomen of T. domestica, which implies a functional switch from crustaceans to insects. Additionally, the role of ftz in segmenting the abdomen of T. domestica suggests it has acquired new functions in primitive insects, beyond its traditional Hox-like roles. Although KOs of lab, Hox3, and Abd-B did not result in obvious external phenotypic changes, they led to a significant decrease in hatching rates and substantial deviations in daily survival numbers compared to the negative control. These findings underscore the indispensable roles of all Hox genes during the embryonic development of T. domestica. Our study sheds new light on the functional evolution of Hox genes in ametabolous insects and enhances our understanding of the genetic underpinnings of insect development and diversification.

Harnessing 3D microarchitecture of pterosaur bone using multi-scale X-ray CT for aerospace material design

Pterosaurs were the largest animals to have achieved powered flight in the history of life on Earth, possessing wingspans akin to some modern light aircraft. Vertebrate fossils have shown their potential to retain information on the chemical, physical, and mechanical properties of precursor bone. However, the fossil record is not a traditional source of inspiration for engineers to create palaeo-bioinspired designs. To explore its potential, this study has imaged the three-dimensional porosity of pterosaur bone intending to inspire and improve the mechanical properties of aerospace materials. Historically, two-dimensional histological analysis has resolved fine-scale structures in fossilised bone, which damages the sample. By applying advanced X-ray imaging techniques in this study (using Image Quality Indicators) we show it is possible to non-destructively resolve/verify the microarchitecture of pterosaur bone not previously seen in three dimensions. Pterosaur bone porosity has helped map the macroscopic stresses of this biomaterial but ultimately presents an opportunity to inspire advanced manufactured materials. This microarchitecture of bone offers a unique geometry where self-healing materials with internal monitoring systems can be developed. The iterative process of Darwinian natural selection has evolved multiple engineering solutions that can be reverse engineered to solve challenges facing industry in the 21st Century.

Cicada minimum age tree: Cryptic speciation and exponentially increasing base substitution rates in recent geologic time

We developed a new time-calibrated phylogenetic tree incorporating primarily endemic Ryukyu Islands cicada data, along with some cryptic species, following the recent global cicada studies by Marshall et al. (2018), Łukasik et al. (2018), Simon et al. (2019), Price et al. (2019), and Hill et al. (2021). A total of 352 specimens were analyzed using BEAST v1.10.4 software with a relaxed clock model. Fossil calibrations dating as far back as the Triassic were adopted, largely following Johnson et al. (2018) and Moulds (2018), with a Quaternary geological event calibration based on Osozawa et al. (2012, 2021b), which was input into BEAST v1.10.4. In the COI tree, the crown age of Cicadoidea was estimated at 200.63 Ma. Tettigarctidae was found to be the oldest lineage, sister to all remaining cicadas. Derotettiginae, at 99.2 Ma, is the next oldest lineage, sister to all other monophyletic cicadas. The Tibicininae clade branched at 66.15 Ma, with the subfamilies Tettigomyiinae, Cicadettinae, and Cicadidae diverging at a crown age of 40.57 Ma. The Cicadinae clade consists of many tribe and genus-specific clades, with numerous cryptic species emerging due to vicariance and adaptive radiation. We estimated the base substitution rate as a function of age, and the results strongly indicate an exponential increase in substitution rates during recent geological time. This increase in cicada biodiversity, including the generation of cryptic species in the Ryukyu Islands and surrounding regions, may have been driven by the spread of C4 grasses and concurrent Quaternary climate changes.

Comparative mitogenomics of Cheiracanthium species (Araneae: Cheiracanthiidae) with phylogenetic implication and evolutionary insights

The genus Cheiracanthium C. L. Koch, 1839 is the most species-rich genus of the family Cheiracanthiidae. Given the unavailability of information on the evolutionary biology and molecular taxonomy of this genus, here we sequenced nine mitochondrial genomes (mitogenomes) of Cheiracanthium species, four of which were fully annotated, and conducted comparative analyses with other well-characterized Araneae mitogenomes. We also provide phylogenetic insights on the genus Cheiracanthium. The circular mitogenomes of the Cheiracanthium contain 37 genes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and one putative control region (CR). All genes show a high A+T bias, characterized by a negative AT skew and positive GC skew, along with numerous overlapped regions and intergenic spacers. Approximately half of the tRNAs lack TΨC and/or dihydrouracil (DHU) arm and are characterized with unpaired amino acid acceptor arms. Most PCGs used the standard ATN start codons and TAR termination codons. The mitochondrial gene order of Cheiracanthium differs significantly from the putative ancestral gene order (Limulus polyphemus). Our novel phylogenetic analyses infer Cheiracanthiidae to be the sister group of Salticidae in BI analysis, but as sister to the node with Miturgidae, Viridasiidae, Corinnidae, Selenopidae, Salticidae, and Philodromidae in ML analysis. We confirm that Cheiracanthium is paraphyletic, for the first time using molecular phylogenetic approaches, with the earliest divergence estimated at 67 Ma. Our findings enhance our understanding of Cheiracanthium taxonomy and evolution.

Phylogenomics of angiosperms based on mitochondrial genes: insights into deep node relationships

BACKGROUND

Angiosperms are the largest plant group and play an essential role in the biosphere. Phylogenetic relationships of many families and orders remain contentious, and, in an attempt to address these, we performed the most extensive sampling of mitochondrial genes to date.

RESULTS

We reconstructed a seed plant phylogenetic framework based on 41 mitochondrial protein-coding sequences (mtCDSs), representing 335 families and 63 orders with 481 angiosperm species. The results for major clades of angiosperms produced moderate to strong support (> 70% bootstrap) for more than 80% of nodes and strong support for most orders. Eight major nodes were supported, including the three paraphyletic ANA orders (Amborellales, Nymphaeales, and Austrobaileyales) and five major core-angiosperm clades. Chloranthales and Ceratophyllales are sister to the eudicots, whereas the monocots are sister to the magnoliids. Although well-supported, relationships within the asterids and rosids were in some cases unresolved or weakly supported, due to the low levels of variability detected in these genes.

CONCLUSIONS

Our results indicated that mitochondrial genomic data were effective at resolving deep node relationships of angiosperm phylogeny and thus represent an important resource for phylogenetics and evolutionary studies of angiosperm.

Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly Bemisia tabaci

Carbohydrate-active enzymes involved in the degradation of plant cell walls and/or the assimilation of plant carbohydrates for energy uptake are widely distributed in microorganisms. In contrast, they are less frequent in animals, although there are exceptions, including examples of carbohydrate-active enzymes acquired by horizontal gene transfer from bacteria or fungi in several of phytophagous arthropods and plant-parasitic nematodes. Although the whitefly Bemisia tabaci is a major agricultural pest, knowledge of horizontal gene transfer-acquired carbohydrate-active enzymes in this phloem-feeding insect of the Hemiptera order (subfamily Aleyrodinae) is still lacking. We performed a comprehensive and accurate detection of horizontal gene transfer candidates in B. tabaci and identified 136 horizontal gene transfer events, 14 of which corresponding to carbohydrate-active enzymes. The B. tabaci horizontal gene transfer-acquired carbohydrate-active enzymes were not only of bacterial or fungal origin, but some were also acquired from plants. Biochemical analysis revealed that members of the glycoside hydrolase families 17 and 152 acquired from plants are functional beta-glucanases with different substrate specificities, suggesting distinct roles. These two carbohydrate-active enzymes are the first characterized glycoside hydrolase families 17 and 152 glucanases in an animal. We identified a lower number of horizontal gene transfer events in the related Aleyrodinae Trialeurodes vaporariorum, with only three horizontal gene transfer-acquired carbohydrate-active enzymes, including a glycoside hydrolase family 152 glucanase, with phylogenetic analysis suggesting a unique horizontal gene transfer event in the ancestor of the Aleyrodinae. Another glycoside hydrolase family 152 carbohydrate-active enzyme, most likely independently acquired from plants, was also identified in two plant cell-feeding insects of the Thysanoptera order, highlighting the importance of plant-acquired carbohydrate-active enzymes in the biology of piercing-sucking insects.

An Investigation of the Conservatism of Sequences Defining trans-Splicing in the mod(mdg4) Locus across Drosophila and Silkworm Species

Splicing, a key step in mRNA maturation, plays a crucial role in the regulation of eukaryotic gene expression. The formation of chimeric mRNAs from two transcripts during splicing is typically a prohibited process; however, in insects, trans-splicing is a primary mechanism for increasing protein diversity for several loci. The aim of this study is to investigate the evolutionary conservativeness of sequences responsible for trans-splicing in the mod(mdg4) locus among species from the Drosophilidae family (order Diptera) and the silkworm (Bombyx mori), which belongs to the order Lepidoptera. Using model transgenic lines, it was shown that sequences from distant Drosophila species retain the ability to support trans-splicing in D. melanogaster. In contrast, analogous sequences in Bombyx mori do not support trans-splicing. Thus, the RNA motifs and their binding hypothetical protein factors, defining trans-splicing, remain conserved among the Drosophilidae group, but have functionally diverged between Diptera and Lepidoptera.

Expansion of three types of transposon superfamilies within 25 Mya lead to large genome size of a rice insect pest

The brown planthoppers (BPH, Nilaparvata lugens), white backed planthopper (WBPH, Sogatella furcifera) and small brown planthopper (SBPH, Laodelphax striatellus) are widely distributed rice insect pests, causing huge annual yield loss of rice production. Though these three planthoppers belong to the same family, Delphacidae of Hemiptera, their genome sizes (GS) are very different, ranging from 541 to 1088 Mb. To uncover the main factors driving GS changes of three planthoppers, we first estimated the GS of their ancestor Fulgoroidea, to be 794.33 Mb, indicating GS expansion in BPH but contraction in SBPH and WBPH. Next, we identified repetitive sequences and compared the TE landscapes, showed that three types of transposon superfamilies, hAT, Tc1-Mariner and Gypsy, expanded within 25 Mya in BPH. In addition, BPH kept ancient TEs of Fulgoroidea dated back to 175 Mya, while SBPH and WBPH have lost most of these ancient TEs. Here, we present evidence that the gain of recently expanded TEs driving the GS expansion and loss of ancient TEs leading to the GS contraction, providing new insights into the mechanism of GS variation.

Evolution of insect metamorphosis - an update

Metamorphosis endowed the insects with properties that enabled them to conquer the Earth. It is a hormonally controlled morphogenetic process that transforms the larva into the adult. Metamorphosis appeared with the origin of wings and flight. The sesquiterpenoid juvenile hormone (JH) suppresses wing morphogenesis and ensures that metamorphosis takes place at the right ontogenetic time. This review explores the origin of insect metamorphosis and the ancestral function of JH. Fossil record shows that the first Paleozoic winged insects had (hemimetabolous) metamorphosis, and their larvae were likely aquatic. In the primitive wingless silverfish that lacks metamorphosis, JH is essential for late embryogenesis and reproduction. JH production after the embryo dorsal closure promotes hatching and terminal tissue maturation.

How life became colourful: colour vision, aposematism, sexual selection, flowers, and fruits

Plants and animals are often adorned with potentially conspicuous colours (e.g. red, yellow, orange, blue, purple). These include the dazzling colours of fruits and flowers, the brilliant warning colours of frogs, snakes, and invertebrates, and the spectacular sexually selected colours of insects, fish, birds, and lizards. Such signals are often thought to utilize pre-existing sensitivities in the receiver's visual systems. This raises the question: what was the initial function of conspicuous colouration and colour vision? Here, we review the origins of colour vision, fruit, flowers, and aposematic and sexually selected colouration. We find that aposematic colouration is widely distributed across animals but relatively young, evolving only in the last ~150 million years (Myr). Sexually selected colouration in animals appears confined to arthropods and chordates, and is also relatively young (generally <100 Myr). Colourful flowers likely evolved ~200 million years ago (Mya), whereas colourful fruits/seeds likely evolved ~300 Mya. Colour vision (sensu lato) appears to be substantially older, and likely originated ~400-500 Mya in both arthropods and chordates. Thus, colour vision may have evolved long before extant lineages with fruit, flowers, aposematism, and sexual colour signals. We also find that there appears to have been an explosion of colour within the last ~100 Myr, including >200 origins of aposematic colouration across nine animal phyla and >100 origins of sexually selected colouration among arthropods and chordates.

[microRNAs: regulators of metamorphosis in insects]

In the animal kingdom, metamorphosis is a well-known developmental transition within various taxa (Cnidarians, Echinoderms, Molluscs, Arthropods, Vertebrates, etc.), which is characterized by the switching from a larval stage to an adult form through the induction of morpho-anatomical, physiological, behavioral, and/or ecological changes. Over the last decades, numerous studies have focused on the hormonal control of cellular processes underlying metamorphosis. Recently, another regulatory network has emerged trough the discovery of microRNAs, non-coding RNAs of 19 to 25 nucleotides that are highly conserved among taxa and act by modulating gene expression at the post-transcriptional level. Experiments carried out on model insects highlighted the relevance of microRNAs in several developmental processes during metamorphosis. This review aims to give an overview of the regulatory actions of microRNAs in the programming of cellular and molecular events associated with the metamorphosis of insects and also to provide new insights into the evolutionary history of this taxon.

Polarized vision in the eyes of the most effective predators: dragonflies and damselflies (Odonata)

Polarization is a property of light that describes the oscillation of the electric field vector. Polarized light can be detected by many invertebrate animals, and this visual channel is widely used in nature. Insects rely on light polarization for various purposes, such as water detection, improving contrast, breaking camouflage, navigation, and signaling during mating. Dragonflies and damselflies (Odonata) are highly visual insects with polarization sensitivity for water detection and likely also navigation. Thus, odonates can serve as ideal models for investigating the ecology and evolution of polarized light perception. We provide an overview of the current state of knowledge concerning polarized light sensitivity in these insects. Specifically, we review recent findings related to the ecological, morphological, and physiological causes that enable these insects to perceive polarized light and discuss the optical properties responsible for the reflection of polarized light by their bodies and wings. Finally, we identify gaps in the current research and suggest future directions that can help to further advance our knowledge of polarization sensitivity in odonates.

Chromosome-level genome assembly of the seasonally polyphenic scorpionfly (Panorpa liui)

Mecoptera is a small relict order of insects within the Holometabola. Panorpidae is the most speciose family in Mecoptera. They are also known as scorpion flies due to the enlarged and upward recurved male genital bulb. Panorpa liui Hua, 1997, a member of Panorpidae, is a bivoltine species of seasonal color polyphenism in the lowland plain of northeastern China. In this study, we applied PacBio HiFi and Hi-C sequencing technologies to generate a chromosome-level genome reference of P. liui. The assembled genome is 678.26 Mbp in size, with 91.3% being anchored onto 23 pseudo-chromosomes. Benchmarking Universal Single-Copy Orthologs (BUSCO) estimation reveals the completeness of this assembly as 95.1%. By integrating full-length transcriptome and homologs of related species, we generated full annotation of this assembly, yielding a total of 15,960 protein-coding genes, of these, 15,892 genes were anchored on the 23 chromosomes. The high-quality genome provides critical genomic resources for population genetics and phylogenetic research on Mecoptera. It also offers valuable information for exploring the mechanisms underlying seasonal color polymorphism.

Deep conservation complemented by novelty and innovation in the insect eye ground plan

A spectacular diversity of forms and features allow species to thrive in different environments, yet some structures remain relatively unchanged. Insect compound eyes are easily recognizable despite dramatic differences in visual abilities across species. It is unknown whether distant insect species use similar or different mechanisms to pattern their eyes or what types of genetic changes produce diversity of form and function. We find that flies, mosquitos, butterflies, moths, beetles, wasps, honeybees, and crickets use homologous developmental programs to pattern their retinas. Transcription factor expression can be used to establish homology of different photoreceptor (PR) types across the insects: Prospero (Pros) for R7, Spalt (Sal) for R7+R8, and Defective proventriculus (Dve) for R1-6. Using gene knockout (CRISPR/Cas9) in houseflies, butterflies, and crickets and gene knockdown (RNAi) in beetles, we found that like Drosophila, EGFR and Sevenless (Sev) signaling pathways are required to recruit motion and color vision PRs, though Drosophila have a decreased reliance on Sev signaling relative to other insects. Despite morphological and physiological variation across species, retina development passes through a highly conserved phylotypic stage when the unit eyes (ommatidia) are first patterned. This patterning process likely represents an "insect eye ground plan" that is established by an ancient developmental program. We identify three types of developmental patterning modifications (ground plan modification, nonstochastic patterns, and specialized regions) that allow for the diversification of insect eyes. We suggest that developmental divergence after the ground plan is established is responsible for the exceptional diversity observed across insect visual systems.

The olfactory pathway in the peracarid crustacean Parhyale hawaiensis (Malacostraca): new insights into the evolution of olfactory processing in Pancrustacea

Our current understanding of the functional morphology of olfactory systems in arthropods largely relies on information obtained in hexapods. Existing analyses of the olfactory pathway in crustacean representatives have suggested that these animals share several corresponding anatomical elements with hexapod olfactory systems but that the latter likely feature a different olfactory wiring logic from receptor to olfactory glomerulus. This study sets out to further explore the diversity of arthropod olfactory systems by presenting a detailed morphological analysis of the peripheral and central olfactory pathways in an emerging model system, the peracarid crustacean Parhyale hawaiensis (Malacostraca). These animals feature all neuronal elements that characterize malacostracan crustacean's olfactory systems, and the simplicity of this animal's olfactory system provided the unique opportunity to quantify the numbers of olfactory sensilla and associated sensory neurons, olfactory interneurons and olfactory glomeruli. These data showed that the number of those neuronal elements is highly variable across individuals, contrasting with more stable numbers of neuronal elements in hexapod olfactory systems that typically are characterized by olfactory glomeruli with individual identities and constant numbers. We discuss the possible steps needed for an evolutionary transformation of a malacostracan crustacean type of olfactory system into a hexapod type.

Alanine metabolism mediates energy allocation of the brown planthopper to adapt to resistant rice

INTRODUCTION

During the adaptation to host plant resistance, herbivorous insects faced the challenge of overcoming plant defenses while ensuring their own development and reproductive success. To achieve this, a strategic allocation of energy resources for detoxification and ecological fitness maintenance became essential.

OBJECTIVE

This study aimed to elucidate the intricate energy allocation mechanisms involved in herbivore adaptation that are currently poorly understood.

METHODS

The rice Oryza sativa and its monophagous pest, the brown planthopper (BPH), Nilaparvata lugens were used as a model system. An integrated analysis of metabolomes and transcriptomes from different BPH populations were conducted to identify the biomarkers. RNA interference of key genes and exogenous injection of key metabolites were performed to validate the function of biomarkers.

RESULTS

We found that alanine was one of the key biomarkers of BPH adaptation to resistant rice variety IR36. We also found that alanine flow determined the adaptation of BPH to IR36 rice. The alanine aminotransferase (ALT)-mediated alanine transfer to pyruvate was necessary and sufficient for the adaptation. This pathway may be conserved, at least to some extent, in BPH adaptation to multiple rice cultivars with different resistance genes. More importantly, ALT-mediated alanine metabolism is the foundation of downstream energy resource allocation for the adaptation. The adapted BPH population exhibited a significantly higher level of energy reserves in the fat body and ovary when fed with IR36 rice, compared to the unadapted population. This rendered the elevated detoxification in the adapted BPH and their ecological fitness recovery.

CONCLUSION

Overall, our findings demonstrated the crucial role of ALT-mediated alanine metabolism in energy allocation during the adaptation to resistant rice in BPH. This will provide novel knowledge regarding the co-evolutionary mechanisms between herbivores and their host plants.

The Genomics Revolution Drives a New Era in Entomology

Thanks to the fast development of sequencing techniques and bioinformatics tools, sequencing the genome of an insect species for specific research purposes has become an increasingly popular practice. Insect genomes not only provide sets of gene sequences but also represent a change in focus from reductionism to systemic biology in the field of entomology. Using insect genomes, researchers are able to identify and study the functions of all members of a gene family, pathway, or gene network associated with a trait of interest. Comparative genomics studies provide new insights into insect evolution, addressing long-lasting controversies in taxonomy. It is also now feasible to uncover the genetic basis of important traits by identifying variants using genome resequencing data of individual insects, followed by genome-wide association analysis. Here, we review the current progress in insect genome sequencing projects and the application of insect genomes in uncovering the phylogenetic relationships between insects and unraveling the mechanisms of important life-history traits. We also summarize the challenges in genome data sharing and possible solutions. Finally, we provide guidance for fully and deeply mining insect genome data.

Form-function relationships of the compound eyes and sensory sensilla of a tiny arboreal hemipteran herbivore: Adaptations for close encounters with leaves

Herbivorous insects experience diverse plant stimuli, the relative influence of which depends upon the scale of the interface between both organisms and the insect's life history. Using microCT and SEM, we conducted a whole insect study of the sensory structures of Glycaspis brimblecombei (Hemiptera: Psylloidea; commonly called psyllids or jumping plant lice) to understand this tiny insect's utilisation of the leaves of their tree hosts - especially to reconcile rapid host assessment versus protracted, sinuous searching behaviours. Each compound eye comprises 360 ommatidia of relatively uniform density and facet diameter indicating limited spatial resolution and sensitivity. The areas of highest relative sampling resolution are not directed ventrally towards the surface of leaves but laterally and dorsally. There is a high abundance of chemo- and mechanosensory sensilla on the genal cones (216-240) and fewer on the terminalia (120-150), i.e. body parts regularly in contact with leaf surfaces. There are even fewer such sensilla on the basitarsi (10-16) and only putative olfactory sensilla on the antennae. Leaf surface conformation probably guides females to veins while contact chemoreception likely stimulates probing; the number of eggs deposited is likely determined by the flow and quality of nutrients experienced during feeding. For this psyllid, vision aids movements among leaves and relocation of hosts if dislodged by wind or escaping predators. Walking, as opposed to flying, maintains continuity of exposure to plant stimuli essential to maximising reproductive success. Such a life history is possible on large, evergreen hosts and is facilitated by rapid accept/reject discrimination of ingesta.

Insect Mitochondrial Genomics: A Decade of Progress

The past decade has seen the availability of insect genomic data explode, with mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of next-generation sequencing has solved many earlier methodological limitations, allowing the routine sequencing of whole mt genomes, including from degraded or museum specimens and in parallel to nuclear genomic projects. The diversity of available taxa now allows finer-scale comparisons between mt and nuclear phylogenomic analyses; high levels of congruence have been found for most orders, with some significant exceptions (e.g., Odonata, Mantodea, Diptera). The evolution of mt gene rearrangements and their association with haplodiploidy have been tested with expanded taxonomic sampling, and earlier proposed trends have been largely supported. Multiple model systems have been developed based on findings unique to insects, including mt genome fragmentation (lice and relatives) and control region duplication (thrips), allowing testing of hypothesized evolutionary drivers of these aberrant genomic phenomena. Finally, emerging research topics consider the contributions of mt genomes to insect speciation and habitat adaption, with very broad potential impacts. Integration between insect mt genomic research and other fields within entomology continues to be our field's greatest opportunity and challenge.