1
|
Zhang X, Zhao J, Erler DV, Rabiee H, Kong Z, Wang S, Wang Z, Virdis B, Yuan Z, Hu S. Characterization of the redox-active extracellular polymeric substances in an anaerobic methanotrophic consortium. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 365:121523. [PMID: 38901321 DOI: 10.1016/j.jenvman.2024.121523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 05/29/2024] [Accepted: 06/16/2024] [Indexed: 06/22/2024]
Abstract
Anaerobic oxidation of methane (AOM) is a microbial process of importance in the global carbon cycle. AOM is predominantly mediated by anaerobic methanotrophic archaea (ANME), the physiology of which is still poorly understood. Here we present a new addition to the current physiological understanding of ANME by examining, for the first time, the biochemical and redox-active properties of the extracellular polymeric substances (EPS) of an ANME enrichment culture. Using a 'Candidatus Methanoperedens nitroreducens'-dominated methanotrophic consortium as the representative, we found it can produce an EPS matrix featuring a high protein-to-polysaccharide ratio of ∼8. Characterization of EPS using FTIR revealed the dominance of protein-associated amide I and amide II bands in the EPS. XPS characterization revealed the functional group of C-(O/N) from proteins accounted for 63.7% of total carbon. Heme-reactive staining and spectroscopic characterization confirmed the distribution of c-type cytochromes in this protein-dominated EPS, which potentially enabled its electroactive characteristic. Redox-active c-type cytochromes in EPS mediated the EET of 'Ca. M. nitroreducens' for the reduction of Ag+ to metallic Ag, which was confirmed by both ex-situ experiments with extracted soluble EPS and in-situ experiments with pristine EPS matrix surrounding cells. The formation of nanoparticles in the EPS matrix during in-situ extracellular Ag + reduction resulted in a relatively lower intracellular Ag distribution fraction, beneficial for alleviating the Ag toxicity to cells. The results of this study provide the first biochemical information on EPS of anaerobic methanotrophic consortia and a new insight into its physiological role in AOM process.
Collapse
Affiliation(s)
- Xueqin Zhang
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia
| | - Jing Zhao
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia; Ecological Engineering of Mine Wastes, Sustainable Minerals Institute, The University of Queensland, Brisbane, Queensland, Australia
| | - Dirk V Erler
- Faculty of Science and Engineering, Southern Cross University, Lismore, NSW, Australia
| | - Hesamoddin Rabiee
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia; School of Chemical Engineering, The University of Queensland, Brisbane, Queensland, Australia; Centre for Future Materials, University of Southern Queensland, Springfield, Queensland, Australia
| | - Zheng Kong
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia
| | - Suicao Wang
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia
| | - Zhiyao Wang
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia
| | - Bernardino Virdis
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia
| | - Zhiguo Yuan
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia; School of Energy and Environment, City University of Hong Kong, Hong Kong SAR, China
| | - Shihu Hu
- Australian Centre for Water and Environmental Biotechnology, The University of Queensland, Brisbane, Queensland, Australia.
| |
Collapse
|
2
|
Ching C, Brychcy M, Nguyen B, Muller P, Pearson AR, Downs M, Regan S, Isley B, Fowle W, Chai Y, Godoy VG. RecA levels modulate biofilm development in Acinetobacter baumannii. Mol Microbiol 2024; 121:196-212. [PMID: 37918886 DOI: 10.1111/mmi.15188] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 10/06/2023] [Accepted: 10/17/2023] [Indexed: 11/04/2023]
Abstract
Infections caused by Acinetobacter baumannii, a Gram-negative opportunistic pathogen, are difficult to eradicate due to the bacterium's propensity to quickly gain antibiotic resistances and form biofilms, a protective bacterial multicellular community. The A. baumannii DNA damage response (DDR) mediates the antibiotic resistance acquisition and regulates RecA in an atypical fashion; both RecALow and RecAHigh cell types are formed in response to DNA damage. The findings of this study demonstrate that the levels of RecA can influence formation and dispersal of biofilms. RecA loss results in surface attachment and prominent biofilms, while elevated RecA leads to diminished attachment and dispersal. These findings suggest that the challenge to treat A. baumannii infections may be explained by the induction of the DDR, common during infection, as well as the delicate balance between maintaining biofilms in low RecA cells and promoting mutagenesis and dispersal in high RecA cells. This study underscores the importance of understanding the fundamental biology of bacteria to develop more effective treatments for infections.
Collapse
Affiliation(s)
- Carly Ching
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Merlin Brychcy
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Brian Nguyen
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Paul Muller
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | | | - Margaret Downs
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Samuel Regan
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Breanna Isley
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - William Fowle
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Yunrong Chai
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| | - Veronica G Godoy
- Department of Biology, Northeastern University, Boston, Massachusetts, USA
| |
Collapse
|
3
|
Pavez VB, Pacheco N, Castro-Severyn J, Pardo-Esté C, Álvarez J, Zepeda P, Krüger G, Gallardo K, Melo F, Vernal R, Aranda C, Remonsellez F, Saavedra CP. Characterization of biofilm formation by Exiguobacterium strains in response to arsenic exposure. Microbiol Spectr 2023; 11:e0265723. [PMID: 37819075 PMCID: PMC10714750 DOI: 10.1128/spectrum.02657-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 08/19/2023] [Indexed: 10/13/2023] Open
Abstract
IMPORTANCE In this work, we characterized the composition, structure, and functional potential for biofilm formation of Exiguobacterium strains isolated from the Salar de Huasco in Chile in the presence of arsenic, an abundant metalloid in the Salar that exists in different oxidation states. Our results showed that the Exiguobacterium strains tested exhibit a significant capacity to form biofilms when exposed to arsenic, which would contribute to their resistance to the metalloid. The results highlight the importance of biofilm formation and the presence of specific resistance mechanisms in the ability of microorganisms to survive and thrive under adverse conditions.
Collapse
Affiliation(s)
- Valentina B. Pavez
- Laboratorio de Microbiología Molecular, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Nicolás Pacheco
- Laboratorio de Microbiología Molecular, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Juan Castro-Severyn
- Laboratorio de Microbiología Aplicada y Extremófilos, Departamento de Ingeniería Química, Universidad Católica del Norte, Antofagasta, Chile
| | - Coral Pardo-Esté
- Laboratorio de Ecología Molecular y Microbiología Aplicada, Departamento de Ciencias Farmacéuticas, Facultad de Ciencias, Universidad Católica del Norte, Antofagasta, Chile
| | - Javiera Álvarez
- Laboratorio de Microbiología Molecular, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
- Laboratory of Allergic Inflammation, Department of Immunology and Microbiology, University of Copenhagen, Copenhagen, Denmark
| | - Phillippi Zepeda
- Laboratorio de Microbiología Molecular, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Gabriel Krüger
- Laboratorio de Microbiología Molecular, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| | - Karem Gallardo
- Centro de Investigación Tecnológica del Agua en el Desierto (CEITSAZA), Universidad Católica del Norte, Antofagasta, Chile
- Departamento de Química, Universidad Católica del Norte, Antofagasta, Chile
| | - Francisco Melo
- Laboratorio de Física no Lineal, Departamento de Física, USACH, Santiago, Chile
| | - Rolando Vernal
- Laboratorio de Biología Periodontal, Facultad de Odontología, Universidad de Chile, Santiago, Chile
| | - Carlos Aranda
- Laboratorio de Microscopía Avanzada, Departamento de Ciencias Biológicas y Biodiversidad Universidad de Los Lagos, Osorno, Chile
| | - Francisco Remonsellez
- Laboratorio de Microbiología Aplicada y Extremófilos, Departamento de Ingeniería Química, Universidad Católica del Norte, Antofagasta, Chile
- Centro de Investigación Tecnológica del Agua en el Desierto (CEITSAZA), Universidad Católica del Norte, Antofagasta, Chile
| | - Claudia P. Saavedra
- Laboratorio de Microbiología Molecular, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Santiago, Chile
| |
Collapse
|
4
|
Abbas S, Yasmin A, Maqbool N, Shah AA, Fariq A. Insights into the microbiological and virulence characteristics of bacteria in orthopaedic implant infections: A study from Pakistan. PLoS One 2023; 18:e0292956. [PMID: 37847701 PMCID: PMC10581495 DOI: 10.1371/journal.pone.0292956] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 10/03/2023] [Indexed: 10/19/2023] Open
Abstract
The exponential increase in the prevalence of multidrug resistant bacteria has resulted in limiting surgical treatment options globally, potentially causing biofilm-related complications, implant failure, and severe consequences. This study aims to isolate and characterize bacteria from post-surgical orthopaedic implant infections and screening for multiple antibiotic resistance. A cross-sectional study was conducted, involving isolation of forty-four dominant pathogenic bacterial isolates from 16 infected implant samples from across Islamabad and Rawalpindi. Out of forty-four, 38% cocci and 61% bacilli were obtained. Approximately 90% of isolates showed multiple antibiotic resistance (MAR) index of more than 0.2. Eleven strains were identified via 16S rRNA gene sequencing as Pseudomonas aeruginosa, Bacillus spp., Planococcus chinensis, Staphylococcus, Escherichia coli and Enterobacter cloacae. The bacterial strain E. coli MB641 showed sensitivity to Polymyxin only, and was resistant to all other antibiotics used. Maximum biofilm forming ability 0.532 ± 0.06, 0.55 ± 0.01 and 0.557 ± 0.07 was observed in Pseudomonas aeruginosa MB663, Pseudomonas aeruginosa MB664 and Bacillus spp. MB647 respectively after 24 hours of incubation. EPS production of bacterial strains was assessed, the polysaccharides and protein content of EPS were found to be in the range of 11-32 μg/ml and 2-10 μg/ml, respectively. Fourier transform infrared spectroscopic analysis of EPS showed the presence of carbohydrates, proteins, alkyl halides, and nucleic acids. X-ray diffraction analysis revealed crystalline structure of EPS extracted from biofilm forming bacteria. These findings suggest a high prevalence of antibiotic-resistant bacteria in orthopaedic implant-associated surgeries, highlighting the urgent need for ongoing monitoring and microorganism testing in infected implants.
Collapse
Affiliation(s)
- Sidra Abbas
- Microbiology and Biotechnology Research laboratory, Department of Biotechnology, Fatima Jinnah Women University, Rawalpindi, Pakistan
| | - Azra Yasmin
- Microbiology and Biotechnology Research laboratory, Department of Biotechnology, Fatima Jinnah Women University, Rawalpindi, Pakistan
| | - Nouman Maqbool
- Department of Orthopaedic Surgery, Fauji Foundation Hospital, Rawalpindi, Pakistan
| | - Asim Ali Shah
- Microbiology Laboratory, Fauji Foundation Hospital, Rawalpindi, Pakistan
| | - Anila Fariq
- Microbiology and Biotechnology Research laboratory, Department of Biotechnology, Fatima Jinnah Women University, Rawalpindi, Pakistan
| |
Collapse
|
5
|
Gadar K, McCarthy RR. Using next generation antimicrobials to target the mechanisms of infection. NPJ ANTIMICROBIALS AND RESISTANCE 2023; 1:11. [PMID: 38686217 PMCID: PMC11057201 DOI: 10.1038/s44259-023-00011-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Accepted: 07/28/2023] [Indexed: 05/02/2024]
Abstract
The remarkable impact of antibiotics on human health is being eroded at an alarming rate by the emergence of multidrug resistant pathogens. There is a recognised consensus that new strategies to tackle infection are urgently needed to limit the devasting impact of antibiotic resistance on our global healthcare infrastructure. Next generation antimicrobials (NGAs) are compounds that target bacterial virulence factors to disrupt pathogenic potential without impacting bacterial viability. By disabling the key virulence factors required to establish and maintain infection, NGAs make pathogens more vulnerable to clearance by the immune system and can potentially render them more susceptible to traditional antibiotics. In this review, we discuss the developing field of NGAs and how advancements in this area could offer a viable standalone alternative to traditional antibiotics or an effective means to prolong antibiotic efficacy when used in combination.
Collapse
Affiliation(s)
- Kavita Gadar
- Division of Biosciences, Department of Life Sciences, College of Health, Medicine and Life Sciences, Brunel University London, Uxbridge, UB8 3PH United Kingdom
| | - Ronan R. McCarthy
- Division of Biosciences, Department of Life Sciences, College of Health, Medicine and Life Sciences, Brunel University London, Uxbridge, UB8 3PH United Kingdom
| |
Collapse
|
6
|
Sajjad W, Nadeem M, Alam T, Rehman AU, Abbasi SW, Ahmad S, Din G, Khan S, Badshah M, Gul S, Farman M, Shah AA. Biological Evaluation and Computational Studies of Methoxy-flavones from Newly Isolated Radioresistant Micromonospora aurantiaca Strain TMC-15. Appl Biochem Biotechnol 2023; 195:4915-4935. [PMID: 37115385 DOI: 10.1007/s12010-023-04517-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/11/2023] [Indexed: 04/29/2023]
Abstract
This study aims to determine UV-B resistance and to investigate computational analysis and antioxidant potential of methoxy-flavones of Micromonospora aurantiaca TMC-15 isolated from Thal Desert, Pakistan. The cellular extract was purified through solid-phase extraction and UV-Vis spectrum analysis indicated absorption peaks at λmax 250 nm, 343 nm, and 380 nm that revealed the presence of methoxy-flavones named eupatilin and 5-hydroxyauranetin. The flavones were evaluated for their antioxidant as well as protein and lipid peroxidation inhibition potential using di(phenyl)-(2,4,6-trinitrophenyl) iminoazanium (DPPH), 2,4-dinitrophenyl hydrazine (DNPH), and thiobarbituric acid reactive substances (TBARS) assays, respectively. The methoxy-flavones were further studied for their docking affinity and interaction dynamics to determine their structural and energetic properties at the atomic level. The antioxidant potential, protein, and lipid oxidation inhibition and DNA damage preventive abilities were correlated as predicted by computational analysis. The eupatilin and 5-hydroxyauranetin binding potential to their targeted proteins 1N8Q and 1OG5 is - 4.1 and - 7.5 kcal/mol, respectively. Moreover, the eupatiline and 5-hydroxyauranetin complexes illustrate van der Waals contacts and strong hydrogen bonds to their respective enzymes target. Both in vitro studies and computational analysis results revealed that methoxy-flavones of Micromonospora aurantiaca TMC-15 can be used against radiation-mediated oxidative damages due to its kosmotrophic nature. The demonstration of good antioxidant activities not only protect DNA but also protein and lipid oxidation and therefore could be a good candidate in radioprotective drugs and as sunscreen due to its kosmotropic nature.
Collapse
Affiliation(s)
- Wasim Sajjad
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
- Department of Biological Sciences, National University of Medical Sciences, Rawalpindi, 46000, Pakistan
| | - Mahnoor Nadeem
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Tayyaba Alam
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Asim Ur Rehman
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Sumra Wajid Abbasi
- Department of Biological Sciences, National University of Medical Sciences, Rawalpindi, 46000, Pakistan
| | - Sajjad Ahmad
- Department of Health and Biological Sciences, Abasyn University, Peshawar, 25000, Pakistan
| | - Ghufranud Din
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
- Department of Medical Laboratory Technology, University of Haripur, Haripur, 22620, Pakistan
| | - Samiullah Khan
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Malik Badshah
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Sarah Gul
- Department of Biological Sciences, Faculty of Basic and Applied Sciences, International Islamic University, Islamabad, Pakistan
| | - Muhammad Farman
- Department of Chemistry, Faculty of Natural Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Aamer Ali Shah
- Department of Microbiology, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan.
| |
Collapse
|
7
|
Priyadarshanee M, Das S. Bacterial extracellular polymeric substances: Biosynthesis and interaction with environmental pollutants. CHEMOSPHERE 2023; 332:138876. [PMID: 37164199 DOI: 10.1016/j.chemosphere.2023.138876] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Revised: 04/12/2023] [Accepted: 05/06/2023] [Indexed: 05/12/2023]
Abstract
Extracellular polymeric substances (EPS) are highly hydrated matrices produced by bacteria, containing various polymers such as polysaccharides, proteins, lipids, and DNA. Extracellular polymer concentrations, ions, and functional groups provide physical stability to the EPS. Constituents of EPS form the three-dimensional architecture and help acquire nutrition for the bacteria. Structural and functional diversity of the extracellular polymer depends on the specific glycosyltransferases, polymerase and transporter proteins. These enzymes are encoded by specific genes present in operons such as crd, alg, wca, and gum reported in Agrobacterium, Pseudomonas, Enterobacteriaceae, and Xanthomonas. The operons regulate the biosynthesis of extracellular polymers such as curdlan, alginate, colonic acid, and xanthan, respectively. Various functional groups in the EPS, such as carbonyl, hydroxyl, phosphoryl, and amide, provide the sorption site for interaction with environmental pollutants. Hydrophobic interactions and coordinate bonds mainly dominate the binding of EPS with environmental pollutants. EPS binds, emulsifies, and solubilizes the organic compounds, enhancing the degradation process. EPS binds with heavy metals through complexation, surface adsorption, precipitation, and ion exchange mechanisms. The biodegradability efficiency and nontoxicity properties of EPS make it an excellent biopolymer for decontaminating environmental pollutants. This review summarizes an overview of the biosynthetic mechanisms and interaction of the bacterial extracellular polymer with environmental pollutants. Interaction mechanisms of pollutants with EPS and EPS-mediated bioremediation will help develop removal applications. Moreover, understanding the genes responsible for EPS production, and implementation of new genetic methodology can be helpful for the enhanced biosynthesis of EPS to control pollution by sequestrating more environmental pollutants.
Collapse
Affiliation(s)
- Monika Priyadarshanee
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769 008, Odisha, India
| | - Surajit Das
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769 008, Odisha, India.
| |
Collapse
|
8
|
Xing Y, Liu S, Tan S, Jiang Y, Luo X, Hao X, Huang Q, Chen W. Core Species Derived from Multispecies Interactions Facilitate the Immobilization of Cadmium. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:4905-4914. [PMID: 36917516 DOI: 10.1021/acs.est.3c00486] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Microbial consortia have opened new avenues for heavy-metal remediation. However, the limited understanding of the overall effect of interspecific interactions on remediation efficacy hinders its application. Here, the effects of multispecies growth and biofilm formation on Cd immobilization were explored from direct and multiple interactions through random combinations of two or three rhizosphere bacteria. In monocultures, Cd stress resulted in an average decrease in planktonic biomass of 26%, but through cooperation, the decrease was attenuated in dual (21%) and triple cultures (13%), possibly involving an increase in surface polysaccharides. More than 65% of the co-cultures exhibited induction of biofilm formation under Cd stress, which further enhanced the role of biofilms in Cd immobilization. Notably, excellent biofilm-forming ability or extensive social induction makes Pseudomonas putida and Brevundimonas diminuta stand out in multispecies biofilm formation and Cd immobilization. These two core species significantly increase the colonization of soil microorganisms on rice roots compared to the control, resulting in a 40% decrease in Cd uptake by rice. Our study enhances the understanding of bacterial interactions under Cd stress and provides a novel strategy for adjusting beneficial soil consortia for heavy-metal remediation.
Collapse
Affiliation(s)
- Yonghui Xing
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Song Liu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Shuxin Tan
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Yi Jiang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Xuesong Luo
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
- Hubei Key Laboratory of Soil Environment and Pollution Remediation, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Xiuli Hao
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
- Hubei Key Laboratory of Soil Environment and Pollution Remediation, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Qiaoyun Huang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
- Hubei Key Laboratory of Soil Environment and Pollution Remediation, Huazhong Agricultural University, Wuhan 430070, P. R. China
| | - Wenli Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, P. R. China
| |
Collapse
|
9
|
Qian J, Fu S, Li J, Toda T, Li H, Sekine M, Takayama Y, Koga S, Shao S, Fan L, Xu P, Zhang X, Cheng J, Jin Z, Zhou W. Effects of organic carbon sources on algal biofilm formation and insight into mechanism. ALGAL RES 2023. [DOI: 10.1016/j.algal.2023.103075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
|
10
|
Liu S, Zheng T, Li Y, Zheng X. A critical review of the central role of microbial regulation in the nitrogen biogeochemical process: New insights for controlling groundwater nitrogen contamination. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 328:116959. [PMID: 36473348 DOI: 10.1016/j.jenvman.2022.116959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 11/16/2022] [Accepted: 11/30/2022] [Indexed: 06/17/2023]
Abstract
With the increase of nitrogen (N) input in vadose zones-groundwater systems, N contamination in groundwater has become a global environmental and geological issue that has a profound impact on the ecological environment and human health. N migration in the vadose zone is the most significant means of contaminating the groundwater aquifer. However, the current research on the control of groundwater N contamination focuses solely on the content change of certain indicators and is unable to comprehend the cause and subsequent development of groundwater N contamination. These factors pose significant environmental management challenges in areas where groundwater is contaminated with nitrate. In recent years, research on the migration and transformation behavior of various N forms in vadose zones-groundwater systems has yielded some breakthroughs but also encountered some roadblocks. The biogeochemical behavior of nitrogen consists of a series of intricate chain reaction cycles (called N-cycle). The crucial role of microorganisms in the N biogeochemical process has attracted the interest of soil carbon- and N-cycle researchers and become a hot topic of study. Nonetheless, the role of microbial regulation in groundwater systems has been largely neglected and needs to be summarized immediately. Consequently, this review summarizes recent advancements, mechanisms, and challenges, and proposes a dynamic perspective on microbial regulation. On the basis of these findings, we propose a dynamic and comprehensive groundwater N system centered on microbial regulation. In addition, we critically summarized the migration and transformation behavior of the most recent N indicators, the impact of global environmental change on each N component, and the non-negligible effects of these factors on the control of groundwater N contamination. Future research must focus on the migration and transformation behavior of nitrogen in the deep vadose zone, based on the dynamic regulation of microorganisms, and complete the missing pieces of the developed N-cycle index system. These are essential for providing scientific guidance for global N management and effectively mitigating N contamination in groundwater.
Collapse
Affiliation(s)
- Shixuan Liu
- Key Laboratory of Marine Environment Science and Ecology, Ministry of Education and College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Tianyuan Zheng
- Key Laboratory of Marine Environment Science and Ecology, Ministry of Education and College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China.
| | - Yongxia Li
- Shandong Academy of Environmental Sciences CO.,LTD, Jinan, 250013, China
| | - Xilai Zheng
- Key Laboratory of Marine Environment Science and Ecology, Ministry of Education and College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China; College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| |
Collapse
|
11
|
Leighton RE, Correa Vélez KE, Xiong L, Creech AG, Amirichetty KP, Anderson GK, Cai G, Norman RS, Decho AW. Vibrio parahaemolyticus and Vibrio vulnificus in vitro colonization on plastics influenced by temperature and strain variability. Front Microbiol 2023; 13:1099502. [PMID: 36704570 PMCID: PMC9871911 DOI: 10.3389/fmicb.2022.1099502] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 12/16/2022] [Indexed: 01/12/2023] Open
Abstract
Marine bacteria often exist in biofilms as communities attached to surfaces, like plastic. Growing concerns exist regarding marine plastics acting as potential vectors of pathogenic Vibrio, especially in a changing climate. It has been generalized that Vibrio vulnificus and Vibrio parahaemolyticus often attach to plastic surfaces. Different strains of these Vibrios exist having different growth and biofilm-forming properties. This study evaluated how temperature and strain variability affect V. parahaemolyticus and V. vulnificus biofilm formation and characteristics on glass (GL), low-density polyethylene (LDPE), polypropylene (PP), and polystyrene (PS). All strains of both species attached to GL and all plastics at 25, 30, and 35°C. As a species, V. vulnificus produced more biofilm on PS (p ≤ 0.05) compared to GL, and biofilm biomass was enhanced at 25°C compared to 30° (p ≤ 0.01) and 35°C (p ≤ 0.01). However, all individual strains' biofilm biomass and cell densities varied greatly at all temperatures tested. Comparisons of biofilm-forming strains for each species revealed a positive correlation (r = 0.58) between their dry biomass weight and OD570 values from crystal violet staining, and total dry biofilm biomass for both species was greater (p ≤ 0.01) on plastics compared to GL. It was also found that extracellular polymeric substance (EPS) chemical characteristics were similar on all plastics of both species, with extracellular proteins mainly contributing to the composition of EPS. All strains were hydrophobic at 25, 30, and 35°C, further illustrating both species' affinity for potential attachment to plastics. Taken together, this study suggests that different strains of V. parahaemolyticus and V. vulnificus can rapidly form biofilms with high cell densities on different plastic types in vitro. However, the biofilm process is highly variable and is species-, strain-specific, and dependent on plastic type, especially under different temperatures.
Collapse
Affiliation(s)
- Ryan E. Leighton
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States
| | - Karlen Enid Correa Vélez
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States
| | - Liyan Xiong
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Addison G. Creech
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Karishma P. Amirichetty
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Gracie K. Anderson
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Guoshuai Cai
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - R. Sean Norman
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States
| | - Alan W. Decho
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States,*Correspondence: Alan W. Decho,
| |
Collapse
|
12
|
KHANGEMBAM CHERITADEVI, SINGH SAMARPAL, CHAKRABARTI RINA, SHARMA JAIGOPAL. Study of effect of various temperatures on the abundance of ammonia oxidizing archaea and bacteria. THE INDIAN JOURNAL OF ANIMAL SCIENCES 2023. [DOI: 10.56093/ijans.v88i5.80023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Temperature plays significant role in the oxidation of ammonia in filtration units of recirculating aquaculture system. The impact of temperature on the abundance of ammonia oxidizing archaea and bacteria, and the expression of ammonia oxidizing gene (amoA) at specific temperature was evaluated. The broken earthen pot pieces used as filter bed materials of recirculating system, showing the presence of microorganisms were introduced in glass containers (5 pieces/5l) filled with synthetic wastewater and exposed to four different temperatures of 10, 20, 30 and 40°C for 40 days. The ammonia oxidation rate was minimum at 10°C. In 20, 30 and 40°C treatments, 99% ammonia was reduced on day-18, 8 and 18, respectively compared to the initial day. Fresh ammonium chloride (2 mM) was added twice to maintain the ammonia concentration in all treatments, except 10°C one. Nitrite-N level was < 1 mg/l at 10°C. The level was highest on day-22 at 20° and 40°C and on day-12 at 30°C. The nitrification was 10 days delayed at 20°C and 40°C compared to 30°C treatment. Concentration of nitrate-N was lowest at 10°C. Highest concentration of nitrate-N was observed on day-40 at 20°C and 40°C and day-26 at 30°C. Highest copy number of bacterial amoA was recorded at 30°C (2.59×107) followed by 20°C (4.08×106), 40°C (1.45×106) and 10°C (5.664×103). Archaeal amoA was highest at 30°C (7.47×103) followed by 40°C (2.98×102) and 20°C (46.8) treatments. Hence it may be concluded that 30°C temperature was optimum for the efficient and faster oxidation of ammonia in the present recirculating system.
Collapse
|
13
|
Levipan HA, Irgang R, Opazo LF, Araya-León H, Avendaño-Herrera R. Collective behavior and virulence arsenal of the fish pathogen Piscirickettsia salmonis in the biofilm realm. Front Cell Infect Microbiol 2022; 12:1067514. [PMID: 36544910 PMCID: PMC9760808 DOI: 10.3389/fcimb.2022.1067514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 11/14/2022] [Indexed: 12/12/2022] Open
Abstract
Piscirickettsiosis is a fish disease caused by the Gram-negative bacterium Piscirickettsia salmonis. This disease has a high socio-economic impact on the Chilean salmonid aquaculture industry. The bacterium has a cryptic character in the environment and their main reservoirs are yet unknown. Bacterial biofilms represent a ubiquitous mechanism of cell persistence in diverse natural environments and a risk factor for the pathogenesis of several infectious diseases, but their microbiological significance for waterborne veterinary diseases, including piscirickettsiosis, have seldom been evaluated. This study analyzed the in vitro biofilm behavior of P. salmonis LF-89T (genogroup LF-89) and CA5 (genogroup EM-90) using a multi-method approach and elucidated the potential arsenal of virulence of the P. salmonis LF-89T type strain in its biofilm state. P. salmonis exhibited a quick kinetics of biofilm formation that followed a multi-step and highly strain-dependent process. There were no major differences in enzymatic profiles or significant differences in cytotoxicity (as tested on the Chinook salmon embryo cell line) between biofilm-derived bacteria and planktonic equivalents. The potential arsenal of virulence of P. salmonis LF-89T in biofilms, as determined by whole-transcriptome sequencing and differential gene expression analysis, consisted of genes involved in cell adhesion, polysaccharide biosynthesis, transcriptional regulation, and gene mobility, among others. Importantly, the global gene expression profiles of P. salmonis LF-89T were not enriched with virulence-related genes upregulated in biofilm development stages at 24 and 48 h. An enrichment in virulence-related genes exclusively expressed in biofilms was also undetected. These results indicate that early and mature biofilm development stages of P. salmonis LF-89T were transcriptionally no more virulent than their planktonic counterparts, which was supported by cytotoxic trials, which, in turn, revealed that both modes of growth induced important and very similar levels of cytotoxicity on the salmon cell line. Our results suggest that the aforementioned biofilm development stages do not represent hot spots of virulence compared with planktonic counterparts. This study provides the first transcriptomic catalogue to select specific genes that could be useful to prevent or control the (in vitro and/or in vivo) adherence and/or biofilm formation by P. salmonis and gain further insights into piscirickettsiosis pathogenesis.
Collapse
Affiliation(s)
- Héctor A. Levipan
- Laboratorio de Ecopatología y Nanobiomateriales, Departamento de Ciencias y Geografía, Facultad de Ciencias Naturales y Exactas, Universidad de Playa Ancha, Valparaíso, Chile,Centro de Espectroscopía Atómica y Molecular (ATMOS-C), Universidad de Playa Ancha, Valparaíso, Chile,*Correspondence: Héctor A. Levipan, ; ; Ruben Avendaño-Herrera, ;
| | - Rute Irgang
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Viña del Mar, Chile,Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile
| | - L. Felipe Opazo
- Institute of Ecology and Biodiversity (IEB), Santiago, Chile,Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
| | - Henry Araya-León
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Viña del Mar, Chile,Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile
| | - Ruben Avendaño-Herrera
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Viña del Mar, Chile,Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile,Centro de Investigación Marina Quintay (CIMARQ), Universidad Andrés Bello, Quintay, Chile,*Correspondence: Héctor A. Levipan, ; ; Ruben Avendaño-Herrera, ;
| |
Collapse
|
14
|
Yang Z, Sun T, Kappler A, Jiang J. Biochar facilitates ferrihydrite reduction by Shewanella oneidensis MR-1 through stimulating the secretion of extracellular polymeric substances. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 848:157560. [PMID: 35901870 DOI: 10.1016/j.scitotenv.2022.157560] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 06/27/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
Biochar can mediate extracellular electron transfer (EET) of Shewanella oneidensis MR-1 and subsequently facilitate dissimilatory reduction of iron(III) minerals. Previous studies mainly focused on the interaction of biochar and membrane cytochrome complexes to reveal the mediating mechanisms between biochar and S. oneidensis MR-1. However, the influence of biochar on the production and activity of extracellular polymeric substances (EPS) has long been neglected, despite the fact that EPS are commonly exudated by S. oneidensis MR-1 and can participate in a variety of electron transfer processes due to their redox activity. Here, we performed a series of microbial ferrihydrite reduction experiments in combination with electrochemical voltametric and impedance analyses to investigate the role of biochar in the formation and transformation of cell EPS during EET. Results showed that the added biochar not only functioned as an electron shuttle facilitating electron transfer, but also induced the secretion of five times more EPS by S. oneidensis MR-1, leading to a 1.4-fold faster ferrihydrite reduction in comparison with biochar-free setups. We further extracted the secreted EPS and found that the proportion of redox-active exoproteins was significantly (p < 0.05) increased in the EPS and resulted in a higher electron exchange capacity in secreted EPS. Such increased exoprotein content also induced a higher ratio of exoprotein to exopolysaccharide, which largely dropped diffusion and electron transfer impedance of EPS to 1.1 and 18 Ω, respectively, and accelerated the EET and thus the ferrihydrite reduction. Overall, our findings revealed the interactions between biochar and EPS matrices, which could potentially play a critical role in EET processes in both environmental or biotechnological systems.
Collapse
Affiliation(s)
- Zhen Yang
- College of Urban and Environmental Science, Peking University, Beijing 100781, China; Geomicrobiology, Center for Applied Geoscience, Tuebingen 72076, Germany.
| | - Tianran Sun
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Andreas Kappler
- Geomicrobiology, Center for Applied Geoscience, Tuebingen 72076, Germany; Cluster of Excellence: EXC 2124: Controlling Microbes to Fight Infection, Tübingen, Germany
| | - Jie Jiang
- College of Environmental Science and Technology, Beijing Forestry University, Beijing 100083, China
| |
Collapse
|
15
|
Soluble Extracellular Polymeric Substances Produced by Parachlorella kessleri and Chlorella vulgaris: Biochemical Characterization and Assessment of Their Cadmium and Lead Sorption Abilities. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27217153. [PMID: 36363977 PMCID: PMC9653888 DOI: 10.3390/molecules27217153] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 10/17/2022] [Accepted: 10/20/2022] [Indexed: 12/15/2022]
Abstract
In the present study, the potential of lead and cadmium removal by the extracellular polymeric substances (EPS) produced from Parachlorella kessleri and Chlorella vulgaris were investigated. Carbohydrates were the dominant components of EPS from both analyzed species. The contents of reducing sugars, uronic acids, and amino acids were higher in EPS synthesized by C. vulgaris than in EPS from P. kessleri. The analysis of the monosaccharide composition showed the presence of rhamnose, mannose and galactose in the EPS obtained from both species. The ICP-OES (inductively coupled plasma optical emission spectrometry) analyses demonstrated that C. vulgaris EPS showed higher sorption capacity in comparison to P. kessleri EPS. The sorption capacity of C. vulgaris EPS increased with the increase in the amount of metal ions. P. kessleri EPS had a maximum sorption capacity in the presence of 100 mg/L of metal ions. The FTIR analysis demonstrated that the carboxyl, hydroxyl, and carbonyl groups of EPS play a key role in the interactions with metal ions. The present study showed C. vulgaris EPS can be used as a biosorbent in bioremediation processes due to its biochemical composition, the presence of significant amounts of negatively charged uronic acids, and higher sorption capacity.
Collapse
|
16
|
Kharangate-Lad A, Bhosle S. Characterization of bioemulsifying EPS from Halobacillus trueperi MXM-16, a halophilic adhered bacterial isolate from the mangrove ecosystem. J Basic Microbiol 2022; 62:1446-1456. [PMID: 36261394 DOI: 10.1002/jobm.202200352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 08/29/2022] [Accepted: 10/01/2022] [Indexed: 11/07/2022]
Abstract
Exopolymeric substances (EPS) produced by bacterial cells play a crucial role in the interaction of the cells with the surrounding environment. Halobacillus trueperi manxer mangrove-16, an adhered bacterial isolate from the mangrove ecosystem was found to produce EPS that was observed by Alcian blue staining and congo red-coomassie blue agar. The EPS of the bacterial isolate exhibited emulsifying properties. Purification of the EPS by dialysis showed an emulsification index of 80% with hexadecane. Qualitative analysis and Fourier's Infrared spectroscopy (FTIR) revealed that the EPS was a glycoprotein in nature. The EPS showed no surface-active properties. Further exploration of the potential of the EPS interaction with metal solutions showed the ability of the bioemulsifier to cause precipitation in the metal solutions and particularly change the color of the Chromium (VI) solution. The scanning electron microscopy-energy-dispersive X-ray spectroscopy (SEM-EDS) of the cells and EPS particularly indicated the interaction of the EPS with the (Fe0 ) zerovalent iron nanoparticles and its effect on the cells and EPS of the bacteria. It is therefore concluded that the EPS is a crucial component that anchors the bacteria to particulate matter in the mangrove ecosystem and also plays an important role in interaction with metals and hydrocarbons.
Collapse
Affiliation(s)
- Amrita Kharangate-Lad
- School of Chemical Sciences, Biochemistry, Goa University, Taleigao-Panaji, Goa, India
| | - Saroj Bhosle
- Department of Microbiology, Goa University, Taleigao-Panaji, Goa, India
| |
Collapse
|
17
|
Ranieri L, Vrouwenvelder JS, Fortunato L. Periodic fouling control strategies in gravity-driven membrane bioreactors (GD-MBRs): Impact on treatment performance and membrane fouling properties. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156340. [PMID: 35654208 DOI: 10.1016/j.scitotenv.2022.156340] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 05/12/2022] [Accepted: 05/26/2022] [Indexed: 06/15/2023]
Abstract
This study aims to assess the effects of periodic membrane fouling control strategies in Gravity-Driven Membrane Bioreactor (GD-MBR) treating primary wastewater. The impact of each control strategy on the reactor performance (permeate flux and water quality), biomass morphology, and fouling composition were evaluated. The application of air scouring coupled with intermittent filtration resulted in the highest permeate flux (4 LMH) compared to only intermittent filtration (i.e., relaxation) (1 LMH) and air scouring under continuous filtration (2.5 LMH). Air scouring coupled with relaxation led to a thin (~50 μm) but with more porous fouling layer and low hydraulic resistance, presenting the lowest concentration of extracellular polymeric substance (EPS) in the biomass. Air scouring under continuous filtration led to a thin (~50 μm), dense, compact, and less porous fouling layer with the highest specific hydraulic resistance. The employment of only relaxation led to the highest fouling formation (~280 μm) on the membrane surface. The highest TN removal (~62%) was achieved in the reactor with only relaxation (no aeration) due to the anoxic condition in the filtration tank, while the highest COD removal (~ 60%) was achieved with air scouring under continuous filtration due to the longer aeration time and the denser fouling layer. The results highlighted the importance of performing in-depth fouling characterization to link the membrane fouling properties to the hydraulic resistance and membrane bioreactor performances (i.e., water quality and water production). Moreover, this work proven the versatility of the GD-MBR, where the choice of the appropriate operation and fouling control strategy relies on the eventual discharge or reuse of the treated effluent.
Collapse
Affiliation(s)
- Luigi Ranieri
- Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology (KAUST), Biological & Environmental Science & Engineering Division (BESE), Thuwal 23955-6900, Saudi Arabia
| | - Johannes S Vrouwenvelder
- Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology (KAUST), Biological & Environmental Science & Engineering Division (BESE), Thuwal 23955-6900, Saudi Arabia
| | - Luca Fortunato
- Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology (KAUST), Biological & Environmental Science & Engineering Division (BESE), Thuwal 23955-6900, Saudi Arabia.
| |
Collapse
|
18
|
Dey A, Yadav M, Kumar D, Dey AK, Samal S, Tanwar S, Sarkar D, Pramanik SK, Chaudhuri S, Das A. A combination therapy strategy for treating antibiotic resistant biofilm infection using a guanidinium derivative and nanoparticulate Ag(0) derived hybrid gel conjugate. Chem Sci 2022; 13:10103-10118. [PMID: 36128224 PMCID: PMC9430544 DOI: 10.1039/d2sc02980d] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Accepted: 07/22/2022] [Indexed: 11/25/2022] Open
Abstract
Bacteria organized in biofilms show significant tolerance to conventional antibiotics compared to their planktonic counterparts and form the basis for chronic infections. Biofilms are composites of different types of extracellular polymeric substances that help in resisting several host-defense measures, including phagocytosis. These are increasingly being recognized as a passive virulence factor that enables many infectious diseases to proliferate and an essential contributing facet to anti-microbial resistance. Thus, inhibition and dispersion of biofilms are linked to addressing the issues associated with therapeutic challenges imposed by biofilms. This report is to address this complex issue using a self-assembled guanidinium-Ag(0) nanoparticle (AD-L@Ag(0)) hybrid gel composite for executing a combination therapy strategy for six difficult to treat biofilm-forming and multidrug-resistant bacteria. Improved efficacy was achieved primarily through effective biofilm inhibition and dispersion by the cationic guanidinium ion derivative, while Ag(0) contributes to the subsequent bactericidal activity on planktonic bacteria. Minimum Inhibitory Concentration (MIC) of the AD-L@Ag(0) formulation was tested against Acinetobacter baumannii (25 μg mL-1), Pseudomonas aeruginosa (0.78 μg mL-1), Staphylococcus aureus (0.19 μg mL-1), Klebsiella pneumoniae (0.78 μg mL-1), Escherichia coli (clinical isolate (6.25 μg mL-1)), Klebsiella pneumoniae (clinical isolate (50 μg mL-1)), Shigella flexneri (clinical isolate (0.39 μg mL-1)) and Streptococcus pneumoniae (6.25 μg mL-1). Minimum bactericidal concentration, and MBIC50 and MBIC90 (Minimum Biofilm Inhibitory Concentration at 50% and 90% reduction, respectively) were evaluated for these pathogens. All these results confirmed the efficacy of the formulation AD-L@Ag(0). Minimum Biofilm Eradication Concentration (MBEC) for the respective pathogens was examined by following the exopolysaccharide quantification method to establish its potency in inhibition of biofilm formation, as well as eradication of mature biofilms. These effects were attributed to the bactericidal effect of AD-L@Ag(0) on biofilm mass-associated bacteria. The observed efficacy of this non-cytotoxic therapeutic combination (AD-L@Ag(0)) was found to be better than that reported in the existing literature for treating extremely drug-resistant bacterial strains, as well as for reducing the bacterial infection load at a surgical site in a small animal BALB/c model. Thus, AD-L@Ag(0) could be a promising candidate for anti-microbial coatings on surgical instruments, wound dressing, tissue engineering, and medical implants.
Collapse
Affiliation(s)
- Ananta Dey
- CSIR - Central Salt and Marine Chemical Research Institute Bhavnagar Gujarat India
- Indian Institute of Science Education and Research Kolkata Mohanpur 741246 West Bengal India
| | - Manisha Yadav
- Translational Health Science and Technology Institute (THSTI) Faridabad 121001 Haryana India
| | - Deepak Kumar
- Translational Health Science and Technology Institute (THSTI) Faridabad 121001 Haryana India
| | - Anik Kumar Dey
- CSIR - Central Salt and Marine Chemical Research Institute Bhavnagar Gujarat India
| | - Sweety Samal
- Translational Health Science and Technology Institute (THSTI) Faridabad 121001 Haryana India
| | - Subhash Tanwar
- Translational Health Science and Technology Institute (THSTI) Faridabad 121001 Haryana India
| | - Debrupa Sarkar
- Translational Health Science and Technology Institute (THSTI) Faridabad 121001 Haryana India
| | - Sumit Kumar Pramanik
- CSIR - Central Salt and Marine Chemical Research Institute Bhavnagar Gujarat India
| | - Susmita Chaudhuri
- Translational Health Science and Technology Institute (THSTI) Faridabad 121001 Haryana India
| | - Amitava Das
- Indian Institute of Science Education and Research Kolkata Mohanpur 741246 West Bengal India
| |
Collapse
|
19
|
Saygin H, Baysal A. Single and combined effects of antibiotics and nanoplastics from surgical masks and plastic bottles on pathogens. Comp Biochem Physiol C Toxicol Pharmacol 2022; 257:109340. [PMID: 35381365 DOI: 10.1016/j.cbpc.2022.109340] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Revised: 03/24/2022] [Accepted: 03/30/2022] [Indexed: 12/11/2022]
Abstract
Over the last decade, pollution of plastics and antibiotics has increased in its threat to the environment and human health. However, very limited information is available concerning impact of co-presence of plastics and antibiotics on environment and human health. Moreover, the potential ingestion and inhalation of nano(micro)plastics due to the disposable materials has dramatically increased. With the outbreak and spread of the COVID-19 in the world, disposable surgical masks and plastic bottles have been widely used by the public, and their rapid use and improper dispensing can cause to increase plastic pollution risk on human. However, impacts of co-presence of nano(micro)plastics and antibiotics on pathogens have yet been demonstrated. Therefore, this study aims to investigate the impact the individual and combined influences of nano-sized plastics (surgical mask and plastic bottles) and antibiotics (amoxicillin and spiramycin) towards the main susceptible bacterium (Staphylococcus epidermidis, Staphylococcus aureus, Bacillus subtilis, Escherichia coli, and Pseudomonas aeruginosa) by microbial activity, biofilm formation and their biochemical characteristics. The results showed that antimicrobial efficiencies of the tested antibiotics were reduced (approximately 10-98%) with the plastics. Moreover, the biochemical pathways of the microbial activity changed by the plastics entrance. Polymer structure and sorption play the role on the reduction in the inhibition of pathogens. In the meantime, the biofilm formation changed and characteristic of the extracellular polymeric substance with the co-presence of plastics and antibiotics mostly depended on the polymer structure, exposure time and sorption.
Collapse
Affiliation(s)
- Hasan Saygin
- Application and Research Center for Advanced Studies, T. C. Istanbul Aydin University, Sefakoy Kucukcekmece, 34295 Istanbul, Turkey
| | - Asli Baysal
- Health Services Vocational School of Higher Education, T. C. Istanbul Aydin University, Sefakoy Kucukcekmece, 34295 Istanbul, Turkey.
| |
Collapse
|
20
|
Lee EH, Lee SW, Seo Y, Deng YH, Lim YJ, Kwon HB, Park K, Kong H, Kim MJ. Manganese Oxide Nanozyme-Doped Diatom for Safe and Efficient Treatment of Peri-Implantitis. ACS APPLIED MATERIALS & INTERFACES 2022; 14:27634-27650. [PMID: 35638645 DOI: 10.1021/acsami.2c05166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Peri-implantitis is a major cause of dental implant failure. Bacterial biofilm contamination on the implant induces surrounding bone resorption and soft tissue inflammation, leading to severe deterioration of oral health. However, conventional biofilm removal procedures, such as mechanical decontamination and antiseptic application, are not effective enough to induce reosseointegration on decontaminated implant surfaces. This is due to (1) incomplete decontamination of the biofilm from inaccessible areas and (2) physicochemical alteration of implant surfaces caused by decontamination procedures. Herein, a safe and effective therapeutic approach for peri-implantitis is developed, which involves decontamination of implant-bound biofilms using the kinetic energy of microsized oxygen bubbles generated from the catalytic reaction between hydrogen peroxide (H2O2) and manganese oxide (MnO2) nanozyme sheet-doped silica diatom microparticles (Diatom Microbubbler, DM). Rapidly moving microsized DM particles are able to penetrate narrow spaces between implant screws, exerting just the right amount of force to entirely destroy biofilms without harming the surrounding mucosa or implant surfaces, as opposed to conventional antiseptics such as chlorhexidine or 3% H2O2 when used alone. Consequently, decontamination with DM facilitates successful reosseointegration on the peri-implantitis-affected implant surface. In summary, our new DM-based therapeutic approach will become a promising alternative to resolve clinically challenging aspects of peri-implantitis.
Collapse
Affiliation(s)
- Eun-Hyuk Lee
- Department of Prosthodontics, School of Dentistry and Dental Research Institute, Seoul National University, Seoul 110-749, South Korea
| | - Sang-Woo Lee
- Department of Physiology, School of Dentistry and Dental Research Institute, Seoul National University, Seoul 110-749, South Korea
| | - Yongbeom Seo
- Department of Chemical and Biomolecular Engineering, Carle Illinois College of Medicine, Department of Pathobiology, Carl R. Woese Institute for Genomic Biology, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Yu-Heng Deng
- Department of Chemical and Biomolecular Engineering, Carle Illinois College of Medicine, Department of Pathobiology, Carl R. Woese Institute for Genomic Biology, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Young-Jun Lim
- Department of Prosthodontics, School of Dentistry and Dental Research Institute, Seoul National University, Seoul 110-749, South Korea
| | - Ho-Beom Kwon
- Department of Prosthodontics, School of Dentistry and Dental Research Institute, Seoul National University, Seoul 110-749, South Korea
| | - Kyungpyo Park
- Department of Physiology, School of Dentistry and Dental Research Institute, Seoul National University, Seoul 110-749, South Korea
| | - Hyunjoon Kong
- Department of Chemical and Biomolecular Engineering, Carle Illinois College of Medicine, Department of Pathobiology, Carl R. Woese Institute for Genomic Biology, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Myung-Joo Kim
- Department of Prosthodontics, School of Dentistry and Dental Research Institute, Seoul National University, Seoul 110-749, South Korea
| |
Collapse
|
21
|
Beaver K, Gaffney EM, Minteer SD. Understanding metabolic bioelectrocatalysis of the purple bacterium Rhodobacter capsulatus through substrate modulation. Electrochim Acta 2022. [DOI: 10.1016/j.electacta.2022.140291] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
|
22
|
Vidal P, Martínez-Martínez M, Fernandez-Lopez L, Roda S, Méndez-García C, Golyshina OV, Guallar V, Peláez AI, Ferrer M. Metagenomic Mining for Esterases in the Microbial Community of Los Rueldos Acid Mine Drainage Formation. Front Microbiol 2022; 13:868839. [PMID: 35663881 PMCID: PMC9162777 DOI: 10.3389/fmicb.2022.868839] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 03/14/2022] [Indexed: 01/17/2023] Open
Abstract
Acid mine drainage (AMD) systems are extremely acidic and are metal-rich formations inhabited by relatively low-complexity communities of acidophiles whose enzymes remain mostly uncharacterized. Indeed, enzymes from only a few AMD sites have been studied. The low number of available cultured representatives and genome sequences of acidophiles inhabiting AMDs makes it difficult to assess the potential of these environments for enzyme bioprospecting. In this study, using naïve and in silico metagenomic approaches, we retrieved 16 esterases from the α/β-hydrolase fold superfamily with the closest match from uncultured acidophilic Acidobacteria, Actinobacteria (Acidithrix, Acidimicrobium, and Ferrimicrobium), Acidiphilium, and other Proteobacteria inhabiting the Los Rueldos site, which is a unique AMD formation in northwestern Spain with a pH of ∼2. Within this set, only two polypeptides showed high homology (99.4%), while for the rest, the pairwise identities ranged between 4 and 44.9%, suggesting that the diversity of active polypeptides was dominated not by a particular type of protein or highly similar clusters of proteins, but by diverse non-redundant sequences. The enzymes exhibited amino acid sequence identities ranging from 39 to 99% relative to homologous proteins in public databases, including those from other AMDs, thus indicating the potential novelty of proteins associated with a specialized acidophilic community. Ten of the 16 hydrolases were successfully expressed in Escherichia coli. The pH for optimal activity ranged from 7.0 to 9.0, with the enzymes retaining 33–68% of their activities at pH 5.5, which was consistent with the relative frequencies of acid residues (from 54 to 67%). The enzymes were the most active at 30–65°C, retaining 20–61% of their activity under the thermal conditions characterizing Los Rueldos (13.8 ± 0.6°C). The analysis of the substrate specificity revealed the capacity of six hydrolases to efficiently degrade (up to 1,652 ± 75 U/g at pH 8.0 and 30°C) acrylic- and terephthalic-like [including bis(2-hydroxyethyl)-terephthalate, BHET] esters, and these enzymes could potentially be of use for developing plastic degradation strategies yet to be explored. Our assessment uncovers the novelty and potential biotechnological interest of enzymes present in the microbial populations that inhibit the Los Rueldos AMD system.
Collapse
Affiliation(s)
- Paula Vidal
- Institute of Catalysis, Department of Applied Biocatalysis, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Mónica Martínez-Martínez
- Institute of Catalysis, Department of Applied Biocatalysis, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Laura Fernandez-Lopez
- Institute of Catalysis, Department of Applied Biocatalysis, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Sergi Roda
- Department of Life Sciences, Barcelona Supercomputing Center, Barcelona, Spain
| | - Celia Méndez-García
- Área de Microbiología, Departamento Biología Funcional e Instituto de Biotecnología de Asturias, Universidad de Oviedo, Oviedo, Spain
| | - Olga V. Golyshina
- Centre for Environmental Biotechnology, School of Natural Sciences, Bangor University, Bangor, United Kingdom
| | - Víctor Guallar
- Department of Life Sciences, Barcelona Supercomputing Center, Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats, Barcelona, Spain
| | - Ana I. Peláez
- Área de Microbiología, Departamento Biología Funcional e Instituto de Biotecnología de Asturias, Universidad de Oviedo, Oviedo, Spain
| | - Manuel Ferrer
- Institute of Catalysis, Department of Applied Biocatalysis, Consejo Superior de Investigaciones Científicas, Madrid, Spain
- *Correspondence: Manuel Ferrer,
| |
Collapse
|
23
|
Perera IA, Abinandan S, Subashchandrabose SR, Venkateswarlu K, Cole N, Naidu R, Megharaj M. Extracellular Polymeric Substances Drive Symbiotic Interactions in Bacterial‒Microalgal Consortia. MICROBIAL ECOLOGY 2022; 83:596-607. [PMID: 34132846 DOI: 10.1007/s00248-021-01772-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 05/10/2021] [Indexed: 06/12/2023]
Abstract
The importance of several factors that drive the symbiotic interactions between bacteria and microalgae in consortia has been well realised. However, the implication of extracellular polymeric substances (EPS) released by the partners remains unclear. Therefore, the present study focused on the influence of EPS in developing consortia of a bacterium, Variovorax paradoxus IS1, with a microalga, Tetradesmus obliquus IS2 or Coelastrella sp. IS3, all isolated from poultry slaughterhouse wastewater. The bacterium increased the specific growth rates of microalgal species significantly in the consortia by enhancing the uptake of nitrate (88‒99%) and phosphate (92‒95%) besides accumulating higher amounts of carbohydrates and proteins. The EPS obtained from exudates, collected from the bacterial or microalgal cultures, contained numerous phytohormones, vitamins, polysaccharides and amino acids that are likely involved in interspecies interactions. The addition of EPS obtained from V. paradoxus IS1 to the culture medium doubled the growth of both the microalgal strains. The EPS collected from T. obliquus IS2 significantly increased the growth of V. paradoxus IS1, but there was no apparent change in bacterial growth when it was cultured in the presence of EPS from Coelastrella sp. IS3. These observations indicate that the interaction between V. paradoxus IS1 and T. obliquus IS2 was mutualism, while commensalism was the interaction between the bacterial strain and Coelastrella sp. IS3. Our present findings thus, for the first time, unveil the EPS-induced symbiotic interactions among the partners involved in bacterial‒microalgal consortia.
Collapse
Affiliation(s)
- Isiri Adhiwarie Perera
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
| | - Sudharsanam Abinandan
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia
| | - Suresh R Subashchandrabose
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapuramu, 515003, India
| | - Nicole Cole
- Analytical and Biomolecular Research Facility (ABRF), The University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Ravi Naidu
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia.
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia.
| |
Collapse
|
24
|
Saha P, Banerjee A, Banerjee G, Bag PK. Inhibitory activities of Typhonium trilobatum (L.) Schott on virulence potential of multi-drug resistant toxigenic Vibrio cholerae. Microb Pathog 2022; 165:105485. [DOI: 10.1016/j.micpath.2022.105485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 03/11/2022] [Accepted: 03/11/2022] [Indexed: 11/29/2022]
|
25
|
Effects of Extracellular Polymeric Substances and Specific Compositions on Enhancement of Copper Bioleaching Efficiency from Waste Printed Circuit Boards. SUSTAINABILITY 2022. [DOI: 10.3390/su14052503] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Bioleaching has been proven to be an efficient and environment-friendly method for processing metalliferous ore and waste printed circuit boards (PCBs), a type of urban mine waste. Extracellular polymeric substances (EPS) play a major role in the attachment of bacteria to the surface of sulfide minerals. However, there are few reports on the effects of EPS components on the bioleaching of metals from PCBs. In this study, synthetic EPS were used to investigate the effects of the composition of exo-polymers on the bioleaching of copper from waste PCBs, including the process efficiency. The copper extraction rate in bioleaching assays with synthetic EPS was 11.7% greater than in those without synthetic EPS. Moreover, the composition of EPS was proven to be a crucial factor affecting the efficiency of copper bioleaching, with EPS containing arginine yielding the highest recovery (95.2% copper). Under the condition of 0.5 g/L synthetic EPS added at the early stage of log phase, the copper leaching efficiency from waste PCBs was highly improved. This study provides important insights into how to analyze the working mechanisms of EPS for a better recovery efficiency.
Collapse
|
26
|
Tong CY, Derek CJC. A Methodological Review on the Characterization of Microalgal Biofilm and Its Extracellular Polymeric Substances. J Appl Microbiol 2022; 132:3490-3514. [DOI: 10.1111/jam.15455] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 12/21/2021] [Accepted: 01/17/2022] [Indexed: 11/28/2022]
Affiliation(s)
- C. Y. Tong
- School of Chemical Engineering, Engineering Campus Universiti Sains Malaysia 14300 Nibong Tebal, Penang Malaysia
| | - C. J. C Derek
- School of Chemical Engineering, Engineering Campus Universiti Sains Malaysia 14300 Nibong Tebal, Penang Malaysia
| |
Collapse
|
27
|
Cazacu N, Chilom CG, Iftimie S, Bălășoiu M, Ladygina VP, Stolyar SV, Orelovich OL, Kovalev YS, Rogachev AV. Biogenic Ferrihydrite Nanoparticles Produced by Klebsiella oxytoca: Characterization, Physicochemical Properties and Bovine Serum Albumin Interactions. NANOMATERIALS 2022; 12:nano12020249. [PMID: 35055266 PMCID: PMC8778533 DOI: 10.3390/nano12020249] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/04/2022] [Accepted: 01/10/2022] [Indexed: 12/20/2022]
Abstract
The synthesis of nanoparticles inside microorganisms is an economical alternative to chemical and physical methods of nanoparticle synthesis. In this study, ferrihydrite nanoparticles synthesized by Klebsiella oxytoca bacterium in special conditions were characterized by scanning electron microscopy (SEM), energy-dispersive X-ray analysis (EDS), small-angle X-ray (SAXS), UV-Vis spectroscopy, fluorescence, fluorescence resonance energy transfer (FRET), and molecular docking. The morphology and the structure of the particles were characterized by means of SEM and SAXS. The elemental content was determined by means of the EDS method. The absorption properties of the ferrihydrite nanoparticles were investigated by UV-Vis spectroscopy. The binding mechanism of the biogenic ferrihydrite nanoparticles to Bovine Serum Albumin (BSA) protein, studied by fluorescence, showed a static and weak process, combined with FRET. Protein denaturation by temperature and urea in the presence of the ferrihydrite nanoparticles demonstrated their influence on the unfolding process. The AutoDock Vina and UCSF Chimera programs were used to predict the optimal binding site of the ferrihydrite to BSA and to find the location of the hydrophobic cavities in the sub-domain IIA of the BSA structure.
Collapse
Affiliation(s)
- Nicoleta Cazacu
- Department of Electricity, Solid State and Biophysics, Faculty of Physics, University of Bucharest, RO-077125 Măgurele, Romania; (N.C.); (S.I.)
| | - Claudia G. Chilom
- Department of Electricity, Solid State and Biophysics, Faculty of Physics, University of Bucharest, RO-077125 Măgurele, Romania; (N.C.); (S.I.)
- Correspondence:
| | - Sorina Iftimie
- Department of Electricity, Solid State and Biophysics, Faculty of Physics, University of Bucharest, RO-077125 Măgurele, Romania; (N.C.); (S.I.)
| | - Maria Bălășoiu
- Department of Nuclear Physics, “Horia Hulubei” National Institute of Physics and Nuclear Engineering, RO-077125 Măgurele, Romania;
- Joint Institute for Nuclear Research, 141980 Dubna, Russia; (O.L.O.); (Y.S.K.); (A.V.R.)
- Moscow Institute of Physics and Technology, 141701 Dolgoprudniy, Russia
| | - Valentina P. Ladygina
- Federal Research Center KSC, Siberian Branch, Russian Academy of Sciences, 660036 Krasnoyarsk, Russia; (V.P.L.); (S.V.S.)
| | - Sergey V. Stolyar
- Federal Research Center KSC, Siberian Branch, Russian Academy of Sciences, 660036 Krasnoyarsk, Russia; (V.P.L.); (S.V.S.)
- Physics Department, School of Engineering Physics and Radio Electronics, Siberian Federal University, 660041 Krasnoyarsk, Russia
- Kirensky Institute of Physics, Siberian Branch, Russian Academy of Sciences, 660036 Krasnoyarsk, Russia
| | - Oleg L. Orelovich
- Joint Institute for Nuclear Research, 141980 Dubna, Russia; (O.L.O.); (Y.S.K.); (A.V.R.)
| | - Yuriy S. Kovalev
- Joint Institute for Nuclear Research, 141980 Dubna, Russia; (O.L.O.); (Y.S.K.); (A.V.R.)
| | - Andrey V. Rogachev
- Joint Institute for Nuclear Research, 141980 Dubna, Russia; (O.L.O.); (Y.S.K.); (A.V.R.)
- Moscow Institute of Physics and Technology, 141701 Dolgoprudniy, Russia
| |
Collapse
|
28
|
Varotsis C, Tselios C, Yiannakkos KA, Andreou C, Papageorgiou M, Nicolaides A. Application of double-pulse laser-induced breakdown spectroscopy (DP-LIBS), Fourier transform infrared micro-spectroscopy and Raman microscopy for the characterization of copper-sulfides. RSC Adv 2021; 12:631-639. [PMID: 35425097 PMCID: PMC8978887 DOI: 10.1039/d1ra07189k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Accepted: 12/14/2021] [Indexed: 12/28/2022] Open
Abstract
The combined application of the structure sensitive techniques Fourier transform infrared μ-spectroscopy and Raman microscopy in conjunction with different approaches of laser-induced breakdown spectroscopy (LIBS) including the two-color double pulse (DP-LIBS) have been applied towards the characterization of whole ore copper-sulfide minerals. Discrete information from the surface of the whole ore minerals that lead to the establishment of infrared marker bands and from the surface of bioleached samples that allow the monitoring of jarosite and biofilm formation are provided by FTIR mapping experiments. Raman data can provide information related to the type of the mineral and of the secondary minerals formed on the surface of the ore. Of the four different LIBS approaches applied towards the characterization of the composition of the whole ore minerals, the DP-LIBS shows the highest sensitivity with increasing signals for both the Fe and Cu metals in the whole ore samples. Raman and FTIR microspectroscopies, laser induced breakdown spectroscopy (LIBS) and DP-LIBS have been applied towards our understanding of the characterization of the structure and structure–function relationship in copper-sulfide minerals.![]()
Collapse
Affiliation(s)
- Constantinos Varotsis
- Department of Chemical Engineering, Cyprus University of Technology Eirinis 95 Limassol 3041 Cyprus +357 25002802
| | - Charalampos Tselios
- Department of Chemical Engineering, Cyprus University of Technology Eirinis 95 Limassol 3041 Cyprus +357 25002802
| | - Konstantinos A Yiannakkos
- Department of Chemical Engineering, Cyprus University of Technology Eirinis 95 Limassol 3041 Cyprus +357 25002802
| | - Charalampos Andreou
- Department of Chemical Engineering, Cyprus University of Technology Eirinis 95 Limassol 3041 Cyprus +357 25002802
| | - Marios Papageorgiou
- Department of Chemical Engineering, Cyprus University of Technology Eirinis 95 Limassol 3041 Cyprus +357 25002802
| | - Antonis Nicolaides
- Department of Chemical Engineering, Cyprus University of Technology Eirinis 95 Limassol 3041 Cyprus +357 25002802
| |
Collapse
|
29
|
Ghassemi N, Poulhazan A, Deligey F, Mentink-Vigier F, Marcotte I, Wang T. Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants. Chem Rev 2021; 122:10036-10086. [PMID: 34878762 DOI: 10.1021/acs.chemrev.1c00669] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Extracellular matrixes (ECMs), such as the cell walls and biofilms, are important for supporting cell integrity and function and regulating intercellular communication. These biomaterials are also of significant interest to the production of biofuels and the development of antimicrobial treatment. Solid-state nuclear magnetic resonance (ssNMR) and magic-angle spinning-dynamic nuclear polarization (MAS-DNP) are uniquely powerful for understanding the conformational structure, dynamical characteristics, and supramolecular assemblies of carbohydrates and other biomolecules in ECMs. This review highlights the recent high-resolution investigations of intact ECMs and native cells in many organisms spanning across plants, bacteria, fungi, and algae. We spotlight the structural principles identified in ECMs, discuss the current technical limitation and underexplored biochemical topics, and point out the promising opportunities enabled by the recent advances of the rapidly evolving ssNMR technology.
Collapse
Affiliation(s)
- Nader Ghassemi
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Alexandre Poulhazan
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States.,Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | | | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| |
Collapse
|
30
|
Xu J, Xie Y, Paul NC, Roopesh MS, Shah DH, Tang J. Water sorption characteristics of freeze-dried bacteria in low-moisture foods. Int J Food Microbiol 2021; 362:109494. [PMID: 34895752 DOI: 10.1016/j.ijfoodmicro.2021.109494] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 10/08/2021] [Accepted: 11/22/2021] [Indexed: 11/17/2022]
Abstract
Water sorption isotherms of bacteria reflect the water activity with the change of moisture content of bacteria at a specific temperature. The temperature-dependency of water activity change can help to understand the thermal resistance of bacteria during a thermal process. Thermal resistance of bacteria in low-moisture foods may differ significantly depending on the physiological characteristics of microorganisms, including cell structure, existence of biofilms, and growth state. Previous studies demonstrated that the incremental change of aw in bacterial cells during thermal treatments resulted in changes in their thermotolerance. In this study, a pathogen associated with low-moisture foods outbreaks, Salmonella Enteritidis PT30 (in planktonic and biofilm forms), and its validated surrogate, Enterococcus faecium, were lyophilized and their water sorption isotherms (WSI) at 20, 40, and 60 °C were determined by using a vapor sorption analyzer and simulated by the Guggenheim, Anderson and De Boer model (GAB). The published thermal death times at 80 °C (D80 °C-values) of these bacteria in low-moisture environments were related with their WSI-derived aw changes. The results showed that planktonic E. faecium and biofilms of Salmonella, exhibiting higher thermal resistance compared to the planktonic cultures of Salmonella, had a smaller increase in aw when thermally treated from 20 to 60 °C in sealed test cells. The computational modeling also showed that when temperature increased from 20 to 60 °C, with an increase in relative humidity from 10% to 60%, freeze-dried planktonic E. faecium and Salmonella cells would equilibrate to their surrounding environments in 0.15 s and 0.25 s, respectively, suggesting a rapid equilibration of bacterial cells to their microenvironment. However, control of bacteria with different cell structure and growth state would require further attentions on process design adjustment because of their different water sorption characteristics.
Collapse
Affiliation(s)
- Jie Xu
- Department of Biological Systems Engineering, Washington State University, P.O. Box 646120, Pullman, WA 99164-6120, USA; Center for Nanotechnology and Nanotoxicology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA.
| | - Yucen Xie
- Department of Biological Systems Engineering, Washington State University, P.O. Box 646120, Pullman, WA 99164-6120, USA
| | - Narayan C Paul
- Texas A&M Veterinary Medical Diagnostic Laboratory, 483 Agronomy Rd, College Station, TCX 77843, USA
| | - M S Roopesh
- Department of Agricultural, Food and Nutritional Science, University of Alberta, 3-16 Agriculture/Forestry Centre, Edmonton, AB T6G 2P5, Canada
| | - Devendra H Shah
- Department of Veterinary Microbiology and Pathology, College of Veterinary Medicine, Washington State University, Pullman, WA 99164-6120, USA
| | - Juming Tang
- Department of Biological Systems Engineering, Washington State University, P.O. Box 646120, Pullman, WA 99164-6120, USA
| |
Collapse
|
31
|
Frolova M, Yudin S, Makarov V, Glazunova O, Alikina O, Markelova N, Kolzhetsov N, Dzhelyadin T, Shcherbakova V, Trubitsyn V, Panyukov V, Zaitsev A, Kiselev S, Shavkunov K, Ozoline O. Lacticaseibacillus paracasei: Occurrence in the Human Gut Microbiota and K-Mer-Based Assessment of Intraspecies Diversity. Life (Basel) 2021; 11:life11111246. [PMID: 34833122 PMCID: PMC8620312 DOI: 10.3390/life11111246] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 11/11/2021] [Accepted: 11/13/2021] [Indexed: 02/07/2023] Open
Abstract
Alignment-free approaches employing short k-mers as barcodes for individual genomes have created a new strategy for taxonomic analysis and paved a way for high-resolution phylogeny. Here, we introduce this strategy for the Lacticaseibacillus paracasei species as a taxon requiring barcoding support for precise systematics. Using this approach for phylotyping of L. paracasei VKM B-1144 at the genus level, we identified four L. paracasei phylogroups and found that L. casei 12A belongs to one of them, rather than to the L. casei clade. Therefore, we propose to change the specification of this strain. At the genus level we found only one relative of L. paracasei VKM B-1144 among 221 genomes, complete or available in contigs, and showed that the coding potential of the genome of this "rare" strain allows its consideration as a potential probiotic component. Four sets of published metagenomes were used to assess the dependence of L. paracasei presence in the human gut microbiome on chronic diseases, dietary changes and antibiotic treatment. Only antibiotics significantly affected their presence, and strain-specific barcoding allowed the identification of the main scenarios of the adaptive response. Thus, suggesting bacteria of this species for compensatory therapy, we also propose strain-specific barcoding for selecting optimal strains for target microbiomes.
Collapse
Affiliation(s)
- Maria Frolova
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Sergey Yudin
- Centre for Strategic Planning of Federal Medical-Biological Agency of Russia, 119121 Moscow, Russia; (S.Y.); (V.M.)
| | - Valentin Makarov
- Centre for Strategic Planning of Federal Medical-Biological Agency of Russia, 119121 Moscow, Russia; (S.Y.); (V.M.)
| | - Olga Glazunova
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Olga Alikina
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Natalia Markelova
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Nikolay Kolzhetsov
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Timur Dzhelyadin
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Viktoria Shcherbakova
- Laboratory of Anaerobic Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Biochemistry and Physiology of Microorganisms of the Russian Academy of Sciences, 142290 Pushchino, Russia; (V.S.); (V.T.)
| | - Vladimir Trubitsyn
- Laboratory of Anaerobic Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Biochemistry and Physiology of Microorganisms of the Russian Academy of Sciences, 142290 Pushchino, Russia; (V.S.); (V.T.)
| | - Valery Panyukov
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
- Institute of Mathematical Problems of Biology RAS—The Branch of Keldysh Institute of Applied Mathematics of the Russian Academy of Sciences, 142290 Pushchino, Russia;
| | - Alexandr Zaitsev
- Institute of Mathematical Problems of Biology RAS—The Branch of Keldysh Institute of Applied Mathematics of the Russian Academy of Sciences, 142290 Pushchino, Russia;
| | - Sergey Kiselev
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
| | - Konstantin Shavkunov
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
- Correspondence: (K.S.); (O.O.)
| | - Olga Ozoline
- Laboratory of Functional Genomics and Cellular Stress, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics of the Russian Academy of Sciences, 142290 Pushchino, Russia; (M.F.); (O.G.); (O.A.); (N.M.); (N.K.); (T.D.); (V.P.); (S.K.)
- Correspondence: (K.S.); (O.O.)
| |
Collapse
|
32
|
Conditions of In Vitro Biofilm Formation by Serogroups of Listeria monocytogenes Isolated from Hass Avocados Sold at Markets in Mexico. Foods 2021; 10:foods10092097. [PMID: 34574207 PMCID: PMC8467555 DOI: 10.3390/foods10092097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 08/31/2021] [Accepted: 09/03/2021] [Indexed: 12/12/2022] Open
Abstract
Listeria monocytogenes is an important pathogen that has been implicated in foodborne illnesses and the recall of products such as fruit and vegetables. This study determines the prevalence of virulence-associated genes and serogroups and evaluates the effects of different growth media and environmental conditions on biofilm formation by L. monocytogenes. Eighteen L. monocytogenes isolates from Hass avocados sold at markets in Guadalajara, Mexico, were characterized by virulence-associated genes and serogroup detection with PCR. All isolates harbored 88.8% actA, 88.8% plcA, 83.3% mpl, 77.7% inlB, 77.7% hly, 66.6% prfA, 55.5% plcB, and 33.3% inlA. The results showed that 38.8% of isolates harbored virulence genes belonging to Listeria pathogenicity island 1 (LIPI-1). PCR revealed that the most prevalent serogroup was serogroup III (1/2b, 3b, and 7 (n = 18, 66.65%)), followed by serogroup IV (4b, 4d-4e (n = 5, 27.7%)) and serogroup I (1/2a-3a (n = 1, 5.5%)). The assessment of the ability to develop biofilms using a crystal violet staining method revealed that L. monocytogenes responded to supplement medium TSBA, 1/10 diluted TSBA, and TSB in comparison with 1/10 diluted TSB (p < 0.05) on polystyrene at 240 h (p < 0.05). In particular, the biofilm formation by L. monocytogenes (7.78 ± 0.03-8.82 ± 0.03 log10 CFU/cm2) was significantly different in terms of TSBA on polypropylene type B (PP) (p < 0.05). In addition, visualization by epifluorescence microscopy, scanning electron microscopy (SEM), and treatment (DNase I and proteinase K) revealed the metabolically active cells and extracellular polymeric substances of biofilms on PP. L. monocytogenes has the ability to develop biofilms that harbor virulence-associated genes, which represent a serious threat to human health and food safety.
Collapse
|
33
|
El-Tarabily KA, El-Saadony MT, Alagawany M, Arif M, Batiha GE, Khafaga AF, Elwan HA, Elnesr SS, E. Abd El-Hack M. Using essential oils to overcome bacterial biofilm formation and their antimicrobial resistance. Saudi J Biol Sci 2021; 28:5145-5156. [PMID: 34466092 PMCID: PMC8380992 DOI: 10.1016/j.sjbs.2021.05.033] [Citation(s) in RCA: 101] [Impact Index Per Article: 33.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 05/12/2021] [Accepted: 05/14/2021] [Indexed: 12/18/2022] Open
Abstract
The increase of resistant bacteria puts a huge pressure on the antimicrobials in current use. Antimicrobial resistance (AMR) results from antibiotic misuse and abuse over many years and is a global financial burden. New polices must be developed for the use of antimicrobials and to continue research efforts to mitigate AMR. It is essential to target the most harmful bacteria and concentrate on their mechanisms of resistance to develop successful antimicrobials. Essential oils (EOs) are occur naturally in plants and have long been used as antimicrobials, but most have not been researched. This review explores EOs as alternative antimicrobials, investigating their ability to decrease or inhibit biofilm formation, and assess their ability to contribute to AMR control. Low concentrations of EOs can inhibit Gram-positive and Gram-negative pathogenic bacteria. Some EOs have demonstrated strong anti-biofilm activities. If EOs are successful against biofilm formation, particularly in bacteria developing AMR, they could be incorporated into new antimicrobials. Therefore, there is a need to investigate these EOs' potential, particularly for surface disinfection, and against bacteria from food, clinical and non-clinical environments.
Collapse
Affiliation(s)
- Khaled A. El-Tarabily
- Department of Biology, College of Science, United Arab Emirates University, 15551 Al-Ain, United Arab Emirates
- Harry Butler Institute, Murdoch University, Murdoch 6150, Western Australia, Australia
| | - Mohamed T. El-Saadony
- Department of Agricultural Microbiology, Faculty of Agriculture, Zagazig University, Zagazig 44511, Egypt
| | - Mahmoud Alagawany
- Department of Poultry, Faculty of Agriculture, Zagazig University, Zagazig 44511, Egypt
| | - Muhammad Arif
- Department of Animal Sciences, College of Agriculture, University of Sargodha, Sargodha, Pakistan
| | - Gaber E. Batiha
- National Research Center for Protozoan Diseases, Obihiro University of Agriculture and Veterinary Medicine, Nishi 2-13, Inada-cho, 080-8555 Obihiro, Hokkaido, Japan
- Department of Pharmacology and Therapeutics, Faculty of Veterinary Medicine, Damanhour University, Damanhour 22511, AlBeheira, Egypt
| | - Asmaa F. Khafaga
- Department of Pathology, Faculty of Veterinary Medicine, Alexandria University, Edfina 22758, Egypt
| | - Hamada A.M. Elwan
- Department of Animal and Poultry Production, Faculty of Agriculture, Minia University, El-Minya 61519, Egypt
| | - Shaaban S. Elnesr
- Department of Poultry Production, Faculty of Agriculture, Fayoum University, Fayoum 63514, Egypt
| | | |
Collapse
|
34
|
Rehman ZU, Vrouwenvelder JS, Saikaly PE. Physicochemical Properties of Extracellular Polymeric Substances Produced by Three Bacterial Isolates From Biofouled Reverse Osmosis Membranes. Front Microbiol 2021; 12:668761. [PMID: 34349735 PMCID: PMC8328090 DOI: 10.3389/fmicb.2021.668761] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 06/07/2021] [Indexed: 11/13/2022] Open
Abstract
This work describes the chemical composition of extracellular polymeric substances (EPS) produced by three bacteria (RO1, RO2, and RO3) isolated from a biofouled reverse osmosis (RO) membrane. We isolated pure cultures of three bacterial strains from a 7-year-old biofouled RO module that was used in a full-scale seawater treatment plant. All the bacterial strains showed similar growth rates, biofilm formation, and produced similar quantities of proteins and polysaccharides. The gel permeation chromatography showed that the EPS produced by all the strains has a high molecular weight; however, the EPS produced by strains RO1 and RO3 showed the highest molecular weight. Fourier Transform Infrared Spectroscopy (FTIR), Proton Nuclear Magnetic Resonance (1H NMR), and Carbon NMR (13C NMR) were used for a detailed characterization of the EPS. These physicochemical analyses allowed us to identify features of EPS that are important for biofilm formation. FTIR analysis indicated the presence of α-1,4 glycosidic linkages (920 cm-1) and amide II (1,550 cm-1) in the EPS, the presence of which has been correlated with the fouling potential of bacteria. The presence of α-glycoside linkages was further confirmed by 13C NMR analysis. The 13C NMR analysis also showed that the EPS produced by these bacteria is chemically similar to foulants obtained from biofouled RO membranes in previous studies. Therefore, our results support the hypothesis that the majority of substances that cause fouling on RO membranes originate from bacteria. Investigation using 1H NMR showed that the EPS contained a high abundance of hydrophobic compounds, and these compounds can lead to flux decline in the membrane processes. Genome sequencing of the isolates showed that they represent novel species of bacteria belonging to the genus Bacillus. Examination of genomes showed that these bacteria carry carbohydrates-active enzymes that play a role in the production of polysaccharides. Further genomic studies allowed us to identify proteins involved in the biosynthesis of EPS and flagella involved in biofilm formation. These analyses provide a glimpse into the physicochemical properties of EPS found on the RO membrane. This knowledge can be useful in the rational design of biofilm control treatments for the RO membrane.
Collapse
Affiliation(s)
- Zahid Ur Rehman
- Water Desalination and Reuse Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Johannes S Vrouwenvelder
- Water Desalination and Reuse Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Pascal E Saikaly
- Water Desalination and Reuse Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| |
Collapse
|
35
|
Chu H, Wang J, Tian B, Qian C, Niu T, Qi S, Yang Y, Ge Y, Dai X, Xin B. Generation behavior of extracellular polymeric substances and its correlation with extraction efficiency of valuable metals and change of process parameters during bioleaching of spent petroleum catalyst. CHEMOSPHERE 2021; 275:130006. [PMID: 33639548 DOI: 10.1016/j.chemosphere.2021.130006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 01/06/2021] [Accepted: 02/14/2021] [Indexed: 06/12/2023]
Abstract
The vital functions of extracellular polymeric substances (EPS) have been well recognized in bioleaching of sulfide ores. However, no report is available about the role of EPS in bioleaching of spent catalyst. To completely and deeply understand the functions of EPS in bioleaching of spent catalyst, the generation behavior of EPS at various pulp densities during bioleaching was characterized by three-dimensional excitation-emission matrix (3DEEM), and its relevance with bioleaching performance and process parameters were analyzed using mathematical means. The results showed that the EPS contain humus-like substances as main component (>70%) and protein-like substances as minor component (<30%). Both total EPS and humus-like substances mainly keep growing over the whole duration of bioleaching at low pulp density of 5.0% or lower; whereas total EPS and humus-like fraction keep declining at high pulp density of 7.5% or higher. Among the total EPS and its components, humus-like substances only have a positive significant correlation with bioleaching efficiencies of both Co and Mo and affect bioleaching process more greatly due to greater correlation coefficient. Biofilm appears at the spent catalyst surface under 2.5% of pulp density mediated by EPS while no biofilm occurs at 10% of pulp density due to shortage of EPS, accounting for the great difference in bioleaching efficiencies between high and low pulp densities which are 48.3% for Mo and 50.0% for Co at 10% of pulp density as well as 75.9% for Mo and 78.8% for Co at 2.5% of pulp density, respectively.
Collapse
Affiliation(s)
- Huichao Chu
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Jia Wang
- College of Environmental and Energy Engineering, Beijing University of Civil Engineering and Architecture, Beijing, 100080, PR China
| | - Bingyang Tian
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Can Qian
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Tianqi Niu
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Shiyue Qi
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Yiran Yang
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China
| | - Yajun Ge
- Beijing Captical Environmental Technology Co, Ltd, Beijing, 100060, PR China
| | - Xiaodong Dai
- Beijing Captical Environmental Technology Co, Ltd, Beijing, 100060, PR China
| | - Baoping Xin
- School of Materials, Beijing Institute of Technology, Beijing, 100081, PR China.
| |
Collapse
|
36
|
Fernandes G, Bastos MC, Mondamert L, Labanowski J, Burrow RA, Rheinheimer DDS. Organic composition of epilithic biofilms from agricultural and urban watershed in South Brazil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:28808-28824. [PMID: 33550548 DOI: 10.1007/s11356-020-11389-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 10/22/2020] [Indexed: 06/12/2023]
Abstract
Active functional groups in biofilms determine the adsorption and desorption of contaminants and nutrients. Epilithic biofilms were characterized in order to understand the association between the chemistry alteration patterns and the surrounding anthropic activities of the Guaporé River watershed. The instrumental analyses included pyrolysis coupled to gas chromatography and mass spectroscopy, spectroscopy in the IR region with attenuated total reflectance, and two-dimensional nuclear magnetic resonance. Spectrometric techniques demonstrated that epilithic biofilms are mainly composed of polysaccharides, nitrogen-containing compounds, lipids, and aromatic and phenolic structures, which have functional groups characteristic of alcohols, esters, ethers, and amides. The polysaccharide levels reflect well the environmental pressures. The chemical composition of epilithic biofilms can be an effective tool for environmental assessment in watercourses, since the different anthropic actions developed in watersheds, mainly agriculture and urban areas, can modify the organic fraction of biofilms.
Collapse
Affiliation(s)
- Gracieli Fernandes
- Centro de Ciências Rurais, Prédio 42, Departamento de Solos, Universidade Federal de Santa Maria, UFSM, Avenida Roraima n° 1000, Cidade Universitária, Bairro Camobi, Santa Maria, Rio Grande do Sul, CEP: 97105-900, Brazil.
| | - Marilia Camotti Bastos
- Centro de Ciências Rurais, Prédio 42, Departamento de Solos, Universidade Federal de Santa Maria, UFSM, Avenida Roraima n° 1000, Cidade Universitária, Bairro Camobi, Santa Maria, Rio Grande do Sul, CEP: 97105-900, Brazil
- UMR IC2MP 7285, CNRS/ Université de Poitiers, ENSIP, TSA41105, 1 rue Marcel Doré, 86073 Poitiers, Cedex 9, France
| | - Leslie Mondamert
- UMR IC2MP 7285, CNRS/ Université de Poitiers, ENSIP, TSA41105, 1 rue Marcel Doré, 86073 Poitiers, Cedex 9, France
| | - Jérôme Labanowski
- UMR IC2MP 7285, CNRS/ Université de Poitiers, ENSIP, TSA41105, 1 rue Marcel Doré, 86073 Poitiers, Cedex 9, France
| | - Robert Alan Burrow
- Centro de Ciências Naturais e Exatas, Departamento de Química, Universidade Federal de Santa Maria, UFSM, Avenida Roraima n° 1000, Cidade Universitária, Bairro Camobi, Santa Maria, Rio Grande do Sul, CEP: 97105-900, Brazil
| | - Danilo Dos Santos Rheinheimer
- Centro de Ciências Rurais, Prédio 42, Departamento de Solos, Universidade Federal de Santa Maria, UFSM, Avenida Roraima n° 1000, Cidade Universitária, Bairro Camobi, Santa Maria, Rio Grande do Sul, CEP: 97105-900, Brazil
| |
Collapse
|
37
|
Hong MJ, Kim MK, Park Y. Comparative Antimicrobial Activity of Hp404 Peptide and Its Analogs against Acinetobacter baumannii. Int J Mol Sci 2021; 22:ijms22115540. [PMID: 34073939 PMCID: PMC8197367 DOI: 10.3390/ijms22115540] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 05/07/2021] [Accepted: 05/19/2021] [Indexed: 12/24/2022] Open
Abstract
An amphipathic α-helical peptide, Hp1404, was isolated from the venomous gland of the scorpion Heterometrus petersii. Hp1404 exhibits antimicrobial activity against methicillin-resistant Staphylococcus aureus but is cytotoxic. In this study, we designed antimicrobial peptides by substituting amino acids at the 14 C-terminal residues of Hp1404 to reduce toxicity and improve antibacterial activity. The analog peptides, which had an amphipathic α-helical structure, were active against gram-positive and gram-negative bacteria, particularly multidrug-resistant Acinetobacter baumannii, and showed lower cytotoxicity than Hp1404. N-phenyl-1-naphthylamine uptake and DisC3-5 assays demonstrated that the peptides kill bacteria by effectively permeating the outer and cytoplasmic membranes. Additionally, the analog peptides inhibited biofilm formation largely than Hp1404 at low concentrations. These results suggest that the analog peptides of Hp1404 can be used as therapeutic agents against A. baumannii infection.
Collapse
Affiliation(s)
- Min Ji Hong
- Department of Biomedical Sciences, Chosun University, Gwangju 61452, Korea; (M.J.H.); (M.K.K.)
| | - Min Kyung Kim
- Department of Biomedical Sciences, Chosun University, Gwangju 61452, Korea; (M.J.H.); (M.K.K.)
| | - Yoonkyung Park
- Department of Biomedical Sciences, Chosun University, Gwangju 61452, Korea; (M.J.H.); (M.K.K.)
- Research Center for Proteineous Materials, Chosun University, Gwangju 61452, Korea
- Correspondence: ; Tel.: +82-62-230-6854; Fax: +82-62-225-6758
| |
Collapse
|
38
|
Hossain S, Urbi Z, Karuniawati H, Mohiuddin RB, Moh Qrimida A, Allzrag AMM, Ming LC, Pagano E, Capasso R. Andrographis paniculata (Burm. f.) Wall. ex Nees: An Updated Review of Phytochemistry, Antimicrobial Pharmacology, and Clinical Safety and Efficacy. Life (Basel) 2021; 11:348. [PMID: 33923529 PMCID: PMC8072717 DOI: 10.3390/life11040348] [Citation(s) in RCA: 83] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Revised: 04/02/2021] [Accepted: 04/03/2021] [Indexed: 02/07/2023] Open
Abstract
Infectious disease (ID) is one of the top-most serious threats to human health globally, further aggravated by antimicrobial resistance and lack of novel immunization options. Andrographis paniculata (Burm. f.) Wall. ex Nees and its metabolites have been long used to treat IDs. Andrographolide, derived from A. paniculata, can inhibit invasive microbes virulence factors and regulate the host immunity. Controlled clinical trials revealed that A. paniculata treatment is safe and efficacious for acute respiratory tract infections like common cold and sinusitis. Hence, A. paniculata, mainly andrographolide, could be considered as an excellent candidate for antimicrobial drug development. Considering the importance, medicinal values, and significant role as antimicrobial agents, this study critically evaluated the antimicrobial therapeutic potency of A. paniculata and its metabolites, focusing on the mechanism of action in inhibiting invasive microbes and biofilm formation. A critical evaluation of the secondary metabolites with the aim of identifying pure compounds that possess antimicrobial functions has further added significant values to this study. Notwithstanding that A. paniculata is a promising source of antimicrobial agents and safe treatment for IDs, further empirical research is warranted.
Collapse
Affiliation(s)
- Sanower Hossain
- Department of Biomedical Science, Kulliyyah of Allied Health Sciences, International Islamic University Malaysia, Kuantan 25200, Pahang, Malaysia
| | - Zannat Urbi
- Department of Industrial Biotechnology, Faculty of Industrial Sciences & Technology, Universiti Malaysia Pahang, Kuantan 26300, Pahang, Malaysia;
| | - Hidayah Karuniawati
- Department of Pharmacology and Clinical Pharmacy, Faculty of Pharmacy, Universitas Muhammadiyah Surakarta, Surakarta 57102, Indonesia;
| | - Ramisa Binti Mohiuddin
- Department of Pharmacy, Faculty of Life Science, Mawlana Bhashani Science and Technology University, Santosh 1902, Tangail, Bangladesh;
| | - Ahmed Moh Qrimida
- Department of Agriculture, Higher Institute of Overall Occupations-Sooq Al Khamees Imsahil, Tripoli 1300, Libya; (A.M.Q.); (A.M.M.A.)
| | - Akrm Mohamed Masaud Allzrag
- Department of Agriculture, Higher Institute of Overall Occupations-Sooq Al Khamees Imsahil, Tripoli 1300, Libya; (A.M.Q.); (A.M.M.A.)
| | - Long Chiau Ming
- PAP Rashidah Sa’adatul Bolkiah Institute of Health Sciences, Universiti Brunei Darussalam, Jalan Tungku Link, Gadong BE1410, Brunei;
| | - Ester Pagano
- Department of Pharmacy, University of Naples Federico II, 80131 Naples, Italy;
| | - Raffaele Capasso
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy
| |
Collapse
|
39
|
Maximizing EPS production from Pseudomonas aeruginosa and its application in Cr and Ni sequestration. Biochem Biophys Rep 2021; 26:100972. [PMID: 33778170 PMCID: PMC7985471 DOI: 10.1016/j.bbrep.2021.100972] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 02/05/2021] [Accepted: 02/22/2021] [Indexed: 11/23/2022] Open
Abstract
Heavy metal contamination of water bodies has been a cause of grave concern around the globe. Analysis of various industrial effluents has revealed a perilous level of Cr (VI) and Ni (II). Pseudomonas aeruginosa is an extracellular polymeric substances (EPSs) producing bacterium. EPS has a great potential in the sequestration of heavy metal ions. In the present study efforts have been made to understand the effect of time, pH, and temperature on production of EPS by P. aeruginosa (MTCC 1688). The extracted EPS has been applied for removal of Ni (II) and Cr (VI) ions from aqueous system. The results revealed that highest EPS yield (26 mg/50 mL) can be obtained after 96 h of incubation at pH 6 and 32 °C temperature in 50 mL of culture. Treatment of 10 mg/L Cr (VI) and Ni (II) with 30 mg/L EPS resulted in the removal of 26% and 9% of Cr (VI) and Ni (II), respectively. Fourier-transform infrared spectral analysis revealed the involvement of –OH, –NH, C–O, diketone, and ester functional groups of EPS in the attachment of Cr (VI) ion while involvement of amide and –C
Created by potrace 1.16, written by Peter Selinger 2001-2019
]]>O groups in Ni (II) binding with EPS. Scaling-up the production of EPS using bioreactor may further help in developing an efficient process for treatment of water polluted with Cr and Ni. Culture conditions for the highest EPS production by Pseudomonas aeruginosa have been optimized. The highest EPS yield (26 mg/50 mL) can be obtained after 96 h of incubation at pH 6 and 32 °C temperature. Treatment of contaminated water with EPS resulted in removal of 26% and 9% of Cr (VI) and Ni (II), respectively. FTIR studies revealed the involvement of –OH, –NH, C–O, diketone, and ester groups of EPS in the attachment of Cr (VI) ion. FTIR studies revealed the involvement of amide and –CO groups in Ni (II) binding with EPS.
Collapse
|
40
|
Mallick S, Kiran S, Maiti TK, Ghosh AS. PBP4 and PBP5 are involved in regulating exopolysaccharide synthesis during Escherichia coli biofilm formation. MICROBIOLOGY-SGM 2021; 167. [PMID: 33539278 DOI: 10.1099/mic.0.001031] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Escherichia coli low-molecular-mass (LMM) Penicillin-binding proteins (PBPs) help in hydrolysing the peptidoglycan fragments from their cell wall and recycling them back into the growing peptidoglycan matrix, in addition to their reported involvement in biofilm formation. Biofilms are external slime layers of extra-polymeric substances that sessile bacterial cells secrete to form a habitable niche for themselves. Here, we hypothesize the involvement of Escherichia coli LMM PBPs in regulating the nature of exopolysaccharides (EPS) prevailing in its extra-polymeric substances during biofilm formation. Therefore, this study includes the assessment of physiological characteristics of E. coli CS109 LMM PBP deletion mutants to address biofilm formation abilities, viability and surface adhesion. Finally, EPS from parent CS109 and its ΔPBP4 and ΔPBP5 mutants were purified and analysed for sugars present. Deletions of LMM PBP reduced biofilm formation, bacterial adhesion and their viability in biofilms. Deletions also diminished EPS production by ΔPBP4 and ΔPBP5 mutants, purification of which suggested an increased overall negative charge compared with their parent. Also, EPS analyses from both mutants revealed the appearance of an unusual sugar, xylose, that was absent in CS109. Accordingly, the reason for reduced biofilm formation in LMM PBP mutants may be speculated as the subsequent production of xylitol and a hindrance in the standard flow of the pentose phosphate pathway.
Collapse
Affiliation(s)
- Sathi Mallick
- Present address: National Institute of Animal Biotechnology, Hyderabad, Telangana, PIN-500032, India
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal, PIN-721302, India
| | - Shanti Kiran
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal, PIN-721302, India
| | - Tapas Kumar Maiti
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal, PIN-721302, India
| | - Anindya S Ghosh
- Department of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal, PIN-721302, India
| |
Collapse
|
41
|
Strieth D, Schwarz A, Stiefelmaier J, Erdmann N, Muffler K, Ulber R. New procedure for separation and analysis of the main components of cyanobacterial EPS. J Biotechnol 2021; 328:78-86. [PMID: 33484743 DOI: 10.1016/j.jbiotec.2021.01.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 01/08/2021] [Accepted: 01/09/2021] [Indexed: 11/25/2022]
Abstract
Phototrophic biofilms produce a matrix of extracellular polymeric substances (EPS), which holds the cells together and functions inter alia as nutrient storage and protection layer. EPS mainly consist of water, polysaccharides, proteins, lipids and nucleic acids as well as lysis and hydrolysis products which makes the composition very complex. Thus, rough simplifications are used and commonly one or at most two components of the EPS are examined. In this work a new procedure for separation and analysis of EPS in the main components (i) polysaccharides, (ii) proteins and (iii) lipids is presented with recovery rates of nearly 100 %. The method was established with synthetic EPS, which based on the composition of real EPS described in literature. Afterwards, the method was transferred to real EPS samples allowing a deeper insight in the composition of EPS from only one sample. The composition of EPS-extracts from Nostoc spec, cultivated under heterotrophic and mixotrophic batch and fed-batch conditions, was analysed during a cultivation period of 14 days. It was observed that mixotrophic cultivation led to higher amounts of carbohydrates, lipids and proteins than heterotrophic cultivation respectively, regardless of batch or fed-batch culture. While the amount of proteins in the EPS increased during the cultivation period, carbohydrates and lipids were dominant in the beginning and decreased afterwards.
Collapse
Affiliation(s)
- Dorina Strieth
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany.
| | - Anna Schwarz
- University of Applied Sciences Bingen, Department of Life Sciences and Engineering, 55411, Bingen am Rhein, Germany
| | - Judith Stiefelmaier
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany
| | - Niklas Erdmann
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany
| | - Kai Muffler
- University of Applied Sciences Bingen, Department of Life Sciences and Engineering, 55411, Bingen am Rhein, Germany
| | - Roland Ulber
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany
| |
Collapse
|
42
|
Mathivanan K, Chandirika JU, Mathimani T, Rajaram R, Annadurai G, Yin H. Production and functionality of exopolysaccharides in bacteria exposed to a toxic metal environment. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 208:111567. [PMID: 33396096 DOI: 10.1016/j.ecoenv.2020.111567] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 10/23/2020] [Accepted: 10/23/2020] [Indexed: 05/26/2023]
Abstract
In this study, the production and compositional analysis of exopolysaccharides produced by Bacillus cereus KMS3-1 grown in metal amended conditions were investigated. In addition, the metal adsorption efficacy of exopolysaccharides (EPS) produced by KMS3-1 strain was evaluated in a batch mode. Increased production of exopolysaccharides by KMS3-1 strain was observed while growing under metal amended conditions (100 mg/L) and also, the yield was in the order of Pb(II)>Cu(II)>Cd(II)>Control. Characterization of EPS using FT-IR, XRD, and SEM analysis revealed that the EPS can interact with metal ions through their functional groups (O‒H, CH, C˭O, C‒O, and C‒C˭O) and assist the detoxification process. Further, equilibrium results were fitted with the Langmuir model and notably, the maximum adsorption capacity (Qmax) of EPS for Cd(II), Cu(II), and Pb(II) found to be 54.05, 71.42, and 78.74 mg/g, respectively. To the best of our knowledge, EPS demonstrating proficient metal adsorption was substantiated by XRD analysis in this study. Owing to good adsorbing nature, the exopolysaccharides could be used as chelating substances for wastewater treatment.
Collapse
Affiliation(s)
- Krishnamurthy Mathivanan
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Environmental Nanotechnology Division, Sri Paramakalyani Centre of Excellence in Environmental Sciences, Manonmaniam Sundaranar University, Alwarkurichi, Tamil Nadu 627 412, India.
| | - Jayaraman Uthaya Chandirika
- Environmental Nanotechnology Division, Sri Paramakalyani Centre of Excellence in Environmental Sciences, Manonmaniam Sundaranar University, Alwarkurichi, Tamil Nadu 627 412, India
| | - Thangavel Mathimani
- Department of Energy and Environment, National Institute of Technology, Tiruchirappalli, Tamil Nadu 620015, India
| | - Rajendran Rajaram
- Department of Marine Science, Bharathidasan University, Tiruchirappalli, Tamil Nadu 620 024, India
| | - Gurusamy Annadurai
- Environmental Nanotechnology Division, Sri Paramakalyani Centre of Excellence in Environmental Sciences, Manonmaniam Sundaranar University, Alwarkurichi, Tamil Nadu 627 412, India
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China.
| |
Collapse
|
43
|
Gupta J, Rathour R, Dupont CL, Kaul D, Thakur IS. Genomic insights into waste valorized extracellular polymeric substances (EPS) produced by Bacillus sp. ISTL8. ENVIRONMENTAL RESEARCH 2021; 192:110277. [PMID: 33069701 DOI: 10.1016/j.envres.2020.110277] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 09/07/2020] [Accepted: 09/12/2020] [Indexed: 06/11/2023]
Abstract
The present study discusses the genomic analysis of Bacillus sp. ISTL8 along with the production of EPS (Extracellular polymeric substances) using carbofuran, a toxic carbamate pesticide. Bacillus strain was isolated from landfill soil and evaluated for high growth rates and EPS production. One strain, renamed ISTL8 grew on a broad range of carbon sources, including toxic carbofuran, while producing copious EPS. Growth assays verified the strain to be thermophilic, low salt tolerant, and with a preference for neutral pH. SEM (Scanning Electron Microscopy) was used for morphological characterization of the EPS while the monomeric composition, bonding patterns and functional groups were deduced by GC-MS (Gas Chromatography-Mass Spectrometry), 1H and 13C NMR (Nuclear Magnetic Resonance) and FTIR (Fourier Transform Infrared Spectroscopy). The production of EPS using carbofuran (carbamate pesticide) as a carbon source was found to be 6.20 ± 0.29 g L-1 containing 61.17% w/w carbohydrates, 29.72% w/w proteins and 6.11% w/w lipids (of dry EPS). The potential cytotoxicity of EPS was evaluated with 3- (4,5-dimethyl thiazol-2-Yl) -2,5-diphenyl tetrazolium bromide (MTT) assay and found non-toxic (2.25%). WGS (Whole genome sequencing) was performed for the strain Bacillus sp. ISTL8 producing EPS; an array of genes putatively involved in the EPS production were identified in several different genomic locations, guiding potential genetic manipulation studies in the future. The results highlight the potency of a bacterial isolate Bacillus sp. ISTL8 to produce non-cytotoxic EPS using carbofuran that can be further harnessed for environmental and commercial applications. Additionally, WGS revealed an array of EPS specific genes which can be effectively engineered for much enhanced production.
Collapse
Affiliation(s)
- Juhi Gupta
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India; Environment and Sustainability Group, J. Craig Venter Institute, La Jolla, CA, USA
| | - Rashmi Rathour
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Christopher L Dupont
- Environment and Sustainability Group, J. Craig Venter Institute, La Jolla, CA, USA
| | - Drishti Kaul
- Environment and Sustainability Group, J. Craig Venter Institute, La Jolla, CA, USA
| | - Indu Shekhar Thakur
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India.
| |
Collapse
|
44
|
Stress Tolerance Effect of Three Different Sub-aerial Cyanobacteria sp. Isolated from Exteriors of Buildings under Adverse Environmental Conditions. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2020. [DOI: 10.22207/jpam.14.4.50] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The current interest of scientific study aims at survival mechanisms of the cyanobacteria on the extreme habitats (i.e. building facades and monuments) growing under adverse conditions. The present investigation points towards finding out indigenous which are tolerant of conflicting environmental conditions, such as pH, temperature and calcium carbonate. Three isolates of cyanobacteria Scytonema coactile, Scytonema geitleri and Lyngbya aerugineo–coerulea from a cave, building façade, and temple, Orissa respectively were examined. Tolerance to stress at different pH and temperature were evaluated by quantifying cyanobacteria growth at different time intervals. Tolerance to CaCO3 was studied by subjecting the isolates to the desired concentration 0.0001 – 1% w/v. Each organism was grown for 15 days at 25°C ± 1°C under continuous light intensity (7.5 W/m2) and then harvested, succeeded by SDS gel-electrophoresis protein analysis. Results revealed that three isolated cyanobacteria species from different sub-aerial habitats responded in a specific manner to different stress conditions and to various concentration of CaCO3 concerning protein synthesis. A 30 and 38 kDa protein was overproduced by all isolates under pH and temperature stress, whereas for CaCO3 stress, the protein of 16 and 22 kDa was overproduced by Lyngbya aerugineo–coerulea respectively which concluded that the survival of the isolates under stress conditions depends on specific protein synthesis. Generally, isolates tolerant to different stress may be due to specific protein synthesis for their survival to extreme habitats.
Collapse
|
45
|
Xiao K, Abbt-Braun G, Horn H. Changes in the characteristics of dissolved organic matter during sludge treatment: A critical review. WATER RESEARCH 2020; 187:116441. [PMID: 33022515 DOI: 10.1016/j.watres.2020.116441] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 09/16/2020] [Accepted: 09/19/2020] [Indexed: 06/11/2023]
Abstract
Dissolved organic matter (DOM) of sludge is a heterogeneous mixture of high to low molecular weight organic substances which is including proteinaceous compounds, carbohydrates, humic substances, lipids, lignins, organic acids, organic micropollutants and other biological derived substances generated during wastewater treatment. This paper reviews definition, composition, quantification, and transformation of DOM during different sludge treatments, and the complex interplay of DOM with microbial communities. In anaerobic digestion, anaerobic digestion-refractory organic matter, particularly compounds showing polycyclic steroid-like, alkane and aromatic structures can be generated after pretreatment. During dewatering, the DOM fraction of low molecular weight proteins (< 20,000 Dalton) is the key parameter deteriorating sludge dewaterability. During composting, decomposition and polymerization of DOM occur, followed by the formation of humic substances. During landfill treatment, the composition of DOM, particularly humic substances, are related with leachate quality. Finally, suggestions are proposed for a better understanding of the transformation and degradation of DOM during sludge treatment. Future work in sludge studies needs the establishment and implementation of definitions for sample handling and the standardization of DOM methods for analysis, including sample preparation and fractionation, and data integration. A more detailed knowledge of DOM in sludge facilitates the operation and optimization of sludge treatment technologies.
Collapse
Affiliation(s)
- Keke Xiao
- School of Environmental Science & Engineering, Huazhong University of Science and Technology, Luoyu Road 1037, Wuhan, Hubei 430074, China; Engler-Bunte-Institut, Water Chemistry and Water Technology, Karlsruhe Institute of Technology, Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany; DVGW Research Laboratories, Water Chemistry and Water Technology, Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany
| | - Gudrun Abbt-Braun
- Engler-Bunte-Institut, Water Chemistry and Water Technology, Karlsruhe Institute of Technology, Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany
| | - Harald Horn
- Engler-Bunte-Institut, Water Chemistry and Water Technology, Karlsruhe Institute of Technology, Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany; DVGW Research Laboratories, Water Chemistry and Water Technology, Engler-Bunte-Ring 9, 76131 Karlsruhe, Germany.
| |
Collapse
|
46
|
Ertekin E, Meslier V, Browning A, Treadgold J, DiRuggiero J. Rock structure drives the taxonomic and functional diversity of endolithic microbial communities in extreme environments. Environ Microbiol 2020; 23:3937-3956. [PMID: 33078515 DOI: 10.1111/1462-2920.15287] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 10/07/2020] [Accepted: 10/18/2020] [Indexed: 11/29/2022]
Abstract
Endolithic (rock-dwelling) microbial communities are ubiquitous in hyper-arid deserts around the world and the last resort for life under extreme aridity. These communities are excellent models to explore biotic and abiotic drivers of diversity because they are of low complexity. Using high-throughput amplicon and metagenome sequencing, combined with X-ray computed tomography, we investigated how water availability and substrate architecture modulated the taxonomic and functional composition of gypsum endolithic communities in the Atacama Desert, Chile. We found that communities inhabiting gypsum rocks with a more fragmented substrate architecture had higher taxonomic and functional diversity, despite having less water available. This effect was tightly linked with community connectedness and likely the result of niche differentiation. Gypsum communities were functionally similar, yet adapted to their unique micro-habitats by modulating their carbon and energy acquisition strategies and their growth modalities. Reconstructed population genomes showed that these endolithic microbial populations encoded potential pathways for anoxygenic phototrophy and atmospheric hydrogen oxidation as supplemental energy sources.
Collapse
Affiliation(s)
- Emine Ertekin
- Department of Biology, Johns Hopkins University, Baltimore, MD, USA
| | - Victoria Meslier
- Department of Biology, Johns Hopkins University, Baltimore, MD, USA.,MetaGenoPolis, Jouy-en-Josas, France
| | | | | | - Jocelyne DiRuggiero
- Department of Biology, Johns Hopkins University, Baltimore, MD, USA.,Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, USA
| |
Collapse
|
47
|
A comprehensive and comparative study on the action of pentacyclic triterpenoids on Vibrio cholerae biofilms. Microb Pathog 2020; 149:104493. [DOI: 10.1016/j.micpath.2020.104493] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Revised: 06/17/2020] [Accepted: 09/04/2020] [Indexed: 02/06/2023]
|
48
|
Elichiry-Ortiz P, Maes P, Weidmann S, Champion D, Coelho C. Analytical combinations to evaluate the macromolecular composition of extracellular substances (ECS) from Lactobacillus plantarum cell culture media. Anal Bioanal Chem 2020; 413:519-531. [PMID: 33155130 DOI: 10.1007/s00216-020-03022-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 10/06/2020] [Accepted: 10/21/2020] [Indexed: 11/28/2022]
Abstract
Sugar-enriched media are used to produce extracellular substances (ECS) by Lactobacillus plantarum WCSF1, with a focus on growing stages and carbon source substrates. Combination of size exclusion chromatography and ATR-FTIR spectroscopy provides physicochemical patterns of bulk ECS produced along culture growing time. Secreted biopolymers present polydisperse and high molecular weight distributions, with significant amounts of carbohydrates and proteins. Results, supported by a multivariate statistical analysis, enable to differentiate the macromolecular content of bacterial ECS along the growing stages regardless of the growing media, highlighting a higher production of proteinaceous materials compared to polysaccharides. At the end of the exponential phase, common exoproteins were present in all the tested sugar-enriched media such as transglycosylases between 20 and 35 kDa, a muropeptidase at 36.9 kDa and a cell wall hydrolase. Additionally, L. plantarum WCFS1 secretes ECS with a greater diversity of proteins, when growing in the sucrose-enriched media. Graphical abstract.
Collapse
Affiliation(s)
- Peio Elichiry-Ortiz
- University of Bourgogne Franche-Comté, AgroSup Dijon, PAM UMR A 02.102, F-21000, Dijon, France
| | - Pauline Maes
- Clinical Innovation Proteomic Platform - CLIPP, 15, Bd Maréchal de Lattre de Tassigny, Bat. Medecine B3, BP37013, 21070, Dijon, France
| | - Stéphanie Weidmann
- University of Bourgogne Franche-Comté, AgroSup Dijon, PAM UMR A 02.102, F-21000, Dijon, France
| | - Dominique Champion
- University of Bourgogne Franche-Comté, AgroSup Dijon, PAM UMR A 02.102, F-21000, Dijon, France
| | - Christian Coelho
- University of Bourgogne Franche-Comté, AgroSup Dijon, PAM UMR A 02.102, F-21000, Dijon, France.
| |
Collapse
|
49
|
Xing Y, Luo X, Liu S, Wan W, Huang Q, Chen W. Synergistic effect of biofilm growth and cadmium adsorption via compositional changes of extracellular matrix in montmorillonite system. BIORESOURCE TECHNOLOGY 2020; 315:123742. [PMID: 32659425 DOI: 10.1016/j.biortech.2020.123742] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Revised: 06/21/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
The interaction of bacterial biofilm and clay minerals provides great potential for heavy metal remediation in contaminated soil, yet, little is known about how heavy metal, clay minerals and their combinations affect the bacterial biofilm performance and heavy metal adsorption. In this study, the response of biofilm development as well as Cd2+ adsorption in the presence of Cd2+ and montmorillonite has been deciphered. Low concentrations of Cd2+ and montmorillonite or their combinations enhanced biofilm formation by increasing polysaccharides proportion in the biofilm matrix, and the maximum adsorption capacity of Cd2+ by biofilm was increased by 1.5 times. Furthermore, the immobilization of Cd2+ by soil was significantly improved when S14-biofilm was introduced. Such results could gain deeper insight into bacterial survival tactics in the complex systems which makes major contribution to microbial remediation of heavy metal polluted environments.
Collapse
Affiliation(s)
- Yonghui Xing
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Xuesong Luo
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Key Laboratory of Soil Environment and Pollution Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Song Liu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Wenjie Wan
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Qiaoyun Huang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Key Laboratory of Soil Environment and Pollution Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Wenli Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China.
| |
Collapse
|
50
|
Vijayakumar K, Thirunanasambandham R. 5-Hydroxymethylfurfural inhibits Acinetobacter baumannii biofilms: an in vitro study. Arch Microbiol 2020; 203:673-682. [PMID: 33037454 DOI: 10.1007/s00203-020-02061-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 09/12/2020] [Accepted: 09/30/2020] [Indexed: 01/23/2023]
Abstract
The present study was aimed to investigate the antibiofilm activity of 5-hydroxymethylfurfural against Acinetobacter baumanni and Vellar estuary isolates v3 (Acinetobacter nosocomialis). The biofilm inhibitory concentration (BIC) of 5HMF against A. baumannii and v3 (A. nosocomialis) was found to be 100 µg/ml) exhibited non-bactericidal concentration-dependent antibiofilm activities against Acinetobacter species. The present study found that 5HMF treatment is very effective in the initial stage of A. baumannii biofilms and it significantly disrupted the mature biofilms. Moreover, 5HMF treatment inhibited the extracellular polymeric substances (EPS), including polysaccharides and proteins production. Results from gene expression and in vitro assays further demonstrated the 5HMF treatment downregulated the expression of bfmR, bap, csuA/B, ompA and katE virulence genes, which consistently affects biofilm formation and its mediated virulence property. The present study suggests that 5HMF unveil its antibiofilm activity by interfering initial biofilm formation and suppressing the virulence regulator genes in A. baumannii. Further studies are required to explore the 5HMF mode of action responsible for the antibiofilm activity.
Collapse
Affiliation(s)
- Karuppiah Vijayakumar
- Centre of Advanced Study in Marine Biology, Annamalai University, Tamil Nadu, Parangipettai, 608 502, India.
| | | |
Collapse
|