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Momi AS, Abbott MC, Rubinfien J, Machta BB, Graf IR. Hair cells in the cochlea must tune resonant modes to the edge of instability without destabilizing collective modes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.19.604330. [PMID: 39091759 PMCID: PMC11291082 DOI: 10.1101/2024.07.19.604330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
Sound produces surface waves along the cochlea's basilar membrane. To achieve the ear's astonishing frequency resolution and sensitivity to faint sounds, dissipation in the cochlea must be canceled via active processes in hair cells, effectively bringing the cochlea to the edge of instability. But how can the cochlea be globally tuned to the edge of instability with only local feedback? To address this question, we use a discretized version of a standard model of basilar membrane dynamics, but with an explicit contribution from active processes in hair cells. Surprisingly, we find the basilar membrane supports two qualitatively distinct sets of modes: a continuum of localized modes and a small number of collective extended modes. Localized modes sharply peak at their resonant position and are largely uncoupled. As a result, they can be amplified almost independently from each other by local hair cells via feedback reminiscent of self-organized criticality. However, this amplification can destabilize the collective extended modes; avoiding such instabilities places limits on possible molecular mechanisms for active feedback in hair cells. Our work illuminates how and under what conditions individual hair cells can collectively create a critical cochlea.
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Affiliation(s)
- Asheesh S. Momi
- Department of Physics, Yale University, New Haven, CT 06520 and Quantitative Biology Institute, Yale University, New Haven, CT 06520
| | - Michael C. Abbott
- Department of Physics, Yale University, New Haven, CT 06520 and Quantitative Biology Institute, Yale University, New Haven, CT 06520
| | - Julian Rubinfien
- Department of Physics, Yale University, New Haven, CT 06520 and Quantitative Biology Institute, Yale University, New Haven, CT 06520
| | - Benjamin B. Machta
- Department of Physics, Yale University, New Haven, CT 06520 and Quantitative Biology Institute, Yale University, New Haven, CT 06520
| | - Isabella R. Graf
- Department of Physics, Yale University, New Haven, CT 06520 and Quantitative Biology Institute, Yale University, New Haven, CT 06520
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Choi K, Rosenbluth W, Graf IR, Kadakia N, Emonet T. Bifurcation enhances temporal information encoding in the olfactory periphery. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.27.596086. [PMID: 38853849 PMCID: PMC11160621 DOI: 10.1101/2024.05.27.596086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Living systems continually respond to signals from the surrounding environment. Survival requires that their responses adapt quickly and robustly to the changes in the environment. One particularly challenging example is olfactory navigation in turbulent plumes, where animals experience highly intermittent odor signals while odor concentration varies over many length- and timescales. Here, we show theoretically that Drosophila olfactory receptor neurons (ORNs) can exploit proximity to a bifurcation point of their firing dynamics to reliably extract information about the timing and intensity of fluctuations in the odor signal, which have been shown to be critical for odor-guided navigation. Close to the bifurcation, the system is intrinsically invariant to signal variance, and information about the timing, duration, and intensity of odor fluctuations is transferred efficiently. Importantly, we find that proximity to the bifurcation is maintained by mean adaptation alone and therefore does not require any additional feedback mechanism or fine-tuning. Using a biophysical model with calcium-based feedback, we demonstrate that this mechanism can explain the measured adaptation characteristics of Drosophila ORNs.
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Choi K, Rosenbluth W, Graf IR, Kadakia N, Emonet T. Bifurcation enhances temporal information encoding in the olfactory periphery. ARXIV 2024:arXiv:2405.20135v2. [PMID: 38855541 PMCID: PMC11160886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Living systems continually respond to signals from the surrounding environment. Survival requires that their responses adapt quickly and robustly to the changes in the environment. One particularly challenging example is olfactory navigation in turbulent plumes, where animals experience highly intermittent odor signals while odor concentration varies over many length- and timescales. Here, we show theoretically that Drosophila olfactory receptor neurons (ORNs) can exploit proximity to a bifurcation point of their firing dynamics to reliably extract information about the timing and intensity of fluctuations in the odor signal, which have been shown to be critical for odor-guided navigation. Close to the bifurcation, the system is intrinsically invariant to signal variance, and information about the timing, duration, and intensity of odor fluctuations is transferred efficiently. Importantly, we find that proximity to the bifurcation is maintained by mean adaptation alone and therefore does not require any additional feedback mechanism or fine-tuning. Using a biophysical model with calcium-based feedback, we demonstrate that this mechanism can explain the measured adaptation characteristics of Drosophila ORNs.
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Affiliation(s)
- Kiri Choi
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511, USA
- Quantitative Biology Institute, Yale University, New Haven, Connecticut 06511, USA
- Swartz Foundation for Theoretical Neuroscience, Yale University, New Haven, Connecticut 06511, USA
| | - Will Rosenbluth
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511, USA
| | - Isabella R. Graf
- Quantitative Biology Institute, Yale University, New Haven, Connecticut 06511, USA
- Department of Physics, Yale University, New Haven, Connecticut 06511, USA
| | - Nirag Kadakia
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511, USA
- Quantitative Biology Institute, Yale University, New Haven, Connecticut 06511, USA
- Swartz Foundation for Theoretical Neuroscience, Yale University, New Haven, Connecticut 06511, USA
| | - Thierry Emonet
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511, USA
- Quantitative Biology Institute, Yale University, New Haven, Connecticut 06511, USA
- Department of Physics, Yale University, New Haven, Connecticut 06511, USA
- Interdepartmental Neuroscience Program, Yale University, New Haven, Connecticut 06511, USA
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Sherry DM, Graf IR, Bryant SJ, Emonet T, Machta BB. Lattice ultrasensitivity produces large gain in E. coli chemosensing. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.28.596300. [PMID: 38854030 PMCID: PMC11160650 DOI: 10.1101/2024.05.28.596300] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
E. coli use a regular lattice of receptors and attached kinases to detect and amplify faint chemical signals. Kinase output is characterized by precise adaptation to a wide range of background ligand levels and large gain in response to small relative changes in ligand concentration. These characteristics are well described by models which achieve their gain through equilibrium cooperativity. But these models are challenged by two experimental results. First, neither adaptation nor large gain are present in receptor binding assays. Second, in cells lacking adaptation machinery, fluctuations can sometimes be enormous, with essentially all kinases transitioning together. Here we introduce a far-from equilibrium model in which receptors gate the spread of activity between neighboring kinases. This model achieves large gain through a mechanism we term lattice ultrasensitivity (LU). In our LU model, kinase and receptor states are separate degrees of freedom, and kinase kinetics are dominated by chemical rates far-from-equilibrium rather than by equilibrium allostery. The model recapitulates the successes of past models, but also matches the challenging experimental findings. Importantly, unlike past lattice critical models, our LU model does not require parameters to be fine tuned for function.
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Turner JG, Manker JR. Noise as an Extrinsic Variable in the Animal Research Facility. JOURNAL OF THE AMERICAN ASSOCIATION FOR LABORATORY ANIMAL SCIENCE : JAALAS 2024; 63:209-220. [PMID: 38749659 PMCID: PMC11193427 DOI: 10.30802/aalas-jaalas-24-000008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 02/24/2024] [Accepted: 04/30/2024] [Indexed: 06/25/2024]
Abstract
Animal research facilities are noisy environments. The high air change rates required in animal housing spaces tend to create higher noise levels from the heating and cooling systems. Housing rooms are typically constructed of hard wall material that is easily cleaned but simultaneously highly reverberant, meaning that the sound cannot be controlled/attenuated so the sounds that are generated bounce around the room uncontrolled. (Soft, sound-absorbing surfaces generally cannot be used in animal facilities because they collect microbes; various wall surface features and sound control panel options are available, although rarely used.) In addition, many of our husbandry tasks such as cage changing, animal health checks, cleaning, and transporting animals produce high levels of noise. Finally, much of the equipment we have increasingly employed in animal housing spaces, such as ventilated caging motors, biosafety, or procedure cabinets, can generate high levels of background noise, including ultrasound. These and many additional factors conspire to create an acoustic environment that is neither naturalistic nor conducive to a stress-free environment. The acoustic variability both within and between institutions can serve as an enormous confounder for research studies and a threat to our ability to reproduce studies over time and between research laboratories. By gaining a better appreciation for the acoustic variables, paired with transparency in reporting the levels, we might be able to gain a better understanding of their impacts and thereby gain some level of control over such acoustic variables in the animal housing space. The result of this could improve both animal welfare and study reproducibility, helping to address our 3Rs goals of Replacement, Reduction, and Refinement in the animal biomedical research enterprise.
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Affiliation(s)
| | - John R Manker
- Turner Scientific Monitoring, Jacksonville, Illinois
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Graf IR, Machta BB. A bifurcation integrates information from many noisy ion channels and allows for milli-Kelvin thermal sensitivity in the snake pit organ. Proc Natl Acad Sci U S A 2024; 121:e2308215121. [PMID: 38294944 PMCID: PMC10861916 DOI: 10.1073/pnas.2308215121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 12/10/2023] [Indexed: 02/02/2024] Open
Abstract
In various biological systems, information from many noisy molecular receptors must be integrated into a collective response. A striking example is the thermal imaging organ of pit vipers. Single nerve fibers in the organ reliably respond to milli-Kelvin (mK) temperature increases, a thousand times more sensitive than their molecular sensors, thermo-transient receptor potential (TRP) ion channels. Here, we propose a mechanism for the integration of this molecular information. In our model, amplification arises due to proximity to a dynamical bifurcation, separating a regime with frequent and regular action potentials (APs), from a regime where APs are irregular and infrequent. Near the transition, AP frequency can have an extremely sharp dependence on temperature, naturally accounting for the thousand-fold amplification. Furthermore, close to the bifurcation, most of the information about temperature available in the TRP channels' kinetics can be read out from the times between consecutive APs even in the presence of readout noise. A key model prediction is that the coefficient of variation in the distribution of interspike times decreases with AP frequency, and quantitative comparison with experiments indeed suggests that nerve fibers of snakes are located very close to the bifurcation. While proximity to such bifurcation points typically requires fine-tuning of parameters, we propose that having feedback act from the order parameter (AP frequency) onto the control parameter robustly maintains the system in the vicinity of the bifurcation. This robustness suggests that similar feedback mechanisms might be found in other sensory systems which also need to detect tiny signals in a varying environment.
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Affiliation(s)
| | - Benjamin B. Machta
- Department of Physics, Yale University, New Haven, CT06511
- Quantitative Biology Institute, Yale University, New Haven, CT06511
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Rabbitt RD, Bidone TC. A parametric blueprint for optimum cochlear outer hair cell design. J R Soc Interface 2023; 20:20220762. [PMID: 36789510 PMCID: PMC9929500 DOI: 10.1098/rsif.2022.0762] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 01/20/2023] [Indexed: 02/16/2023] Open
Abstract
The present work examines the hypothesis that cochlear outer hair cell (OHC) properties vary in precise proportions along the tonotopic map to optimize electromechanical power conversion. We tested this hypothesis using a very simple model of a single isolated OHC driving a mechanical load. Results identify three non-dimensional ratios that are predicted to optimize power conversion: the ratio of the resistive-capacitive (RC) corner to the characteristic frequency (CF), the ratio of nonlinear to linear capacitance and the ratio of OHC stiffness to cochlear load stiffness. Optimum efficiency requires all three ratios to be universal constants, independent of CF and species. The same ratios are cardinal control parameters that maximize power output by positioning the OHC operating point on the edge of a dynamic instability. Results support the hypothesis that OHC properties evolved to optimize electro-mechanical power conversion. Identification of the RC corner frequency as a control parameter reveals a powerful mechanism used by medial olivocochlear efferent system to control OHC power output. Results indicate the upper-frequency limit of OHC power output is not constrained by the speed of the motor itself but instead is probably limited by the size of the nucleus and membrane surface area available for ion-channel expression.
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Affiliation(s)
- Richard D. Rabbitt
- Biomedical Engineering, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
- Otolaryngology, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
- Neuroscience Program, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
| | - Tamara C. Bidone
- Biomedical Engineering, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
- Molecular Pharmaceutics, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
- Department of Biochemistry, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
- Scientific Computing & Imaging Institute, University of Utah, 36 S Wasatch Drive, Salt Lake City, UT 84112, USA
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A minimal physics-based model for musical perception. Proc Natl Acad Sci U S A 2023; 120:e2216146120. [PMID: 36693091 PMCID: PMC9945942 DOI: 10.1073/pnas.2216146120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Some people, entirely untrained in music, can listen to a song and replicate it on a piano with unnerving accuracy. What enables some to "hear" music so much better than others? Long-standing research confirms that part of the answer is undoubtedly neurological and can be improved with training. However, are there structural, physical, or engineering attributes of the human hearing mechanism apparatus (i.e., the hair cells of the internal ear) that render one human innately superior to another in terms of propensity to listen to music? In this work, we investigate a physics-based model of the electromechanics of the hair cells in the inner ear to understand why a person might be physiologically better poised to distinguish musical sounds. A key feature of the model is that we avoid a "black-box" systems-type approach. All parameters are well-defined physical quantities, including membrane thickness, bending modulus, electromechanical properties, and geometrical features, among others. Using the two-tone interference problem as a proxy for musical perception, our model allows us to establish the basis for exploring the effect of external factors such as medicine or environment. As an example of the insights we obtain, we conclude that the reduction in bending modulus of the cell membranes (which for instance may be caused by the usage of a certain class of analgesic drugs) or an increase in the flexoelectricity of the hair cell membrane can interfere with the perception of two-tone excitation.
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9
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Signatures of cochlear processing in neuronal coding of auditory information. Mol Cell Neurosci 2022; 120:103732. [PMID: 35489636 DOI: 10.1016/j.mcn.2022.103732] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 04/19/2022] [Accepted: 04/21/2022] [Indexed: 11/22/2022] Open
Abstract
The vertebrate ear is endowed with remarkable perceptual capabilities. The faintest sounds produce vibrations of magnitudes comparable to those generated by thermal noise and can nonetheless be detected through efficient amplification of small acoustic stimuli. Two mechanisms have been proposed to underlie such sound amplification in the mammalian cochlea: somatic electromotility and active hair-bundle motility. These biomechanical mechanisms may work in concert to tune auditory sensitivity. In addition to amplitude sensitivity, the hearing system shows exceptional frequency discrimination allowing mammals to distinguish complex sounds with great accuracy. For instance, although the wide hearing range of humans encompasses frequencies from 20 Hz to 20 kHz, our frequency resolution extends to one-thirtieth of the interval between successive keys on a piano. In this article, we review the different cochlear mechanisms underlying sound encoding in the auditory system, with a particular focus on the frequency decomposition of sounds. The relation between peak frequency of activation and location along the cochlea - known as tonotopy - arises from multiple gradients in biophysical properties of the sensory epithelium. Tonotopic mapping represents a major organizational principle both in the peripheral hearing system and in higher processing levels and permits the spectral decomposition of complex tones. The ribbon synapses connecting sensory hair cells to auditory afferents and the downstream spiral ganglion neurons are also tuned to process periodic stimuli according to their preferred frequency. Though sensory hair cells and neurons necessarily filter signals beyond a few kHz, many animals can hear well beyond this range. We finally describe how the cochlear structure shapes the neural code for further processing in order to send meaningful information to the brain. Both the phase-locked response of auditory nerve fibers and tonotopy are key to decode sound frequency information and place specific constraints on the downstream neuronal network.
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10
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Gianoli F, Hogan B, Dilly É, Risler T, Kozlov AS. Fast adaptation of cooperative channels engenders Hopf bifurcations in auditory hair cells. Biophys J 2022; 121:897-909. [PMID: 35176272 PMCID: PMC8943817 DOI: 10.1016/j.bpj.2022.02.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 12/22/2021] [Accepted: 02/09/2022] [Indexed: 12/01/2022] Open
Abstract
Since the pioneering work of Thomas Gold, published in 1948, it has been known that we owe our sensitive sense of hearing to a process in the inner ear that can amplify incident sounds on a cycle-by-cycle basis. Called the active process, it uses energy to counteract the viscous dissipation associated with sound-evoked vibrations of the ear's mechanotransduction apparatus. Despite its importance, the mechanism of the active process and the proximate source of energy that powers it have remained elusive, especially at the high frequencies characteristic of amniote hearing. This is partly due to our insufficient understanding of the mechanotransduction process in hair cells, the sensory receptors and amplifiers of the inner ear. It has been proposed previously that cyclical binding of Ca2+ ions to individual mechanotransduction channels could power the active process. That model, however, relied on tailored reaction rates that structurally forced the direction of the cycle. Here we ground our study on our previous model of hair-cell mechanotransduction, which relied on cooperative gating of pairs of channels, and incorporate into it the cyclical binding of Ca2+ ions. With a single binding site per channel and reaction rates drawn from thermodynamic principles, the current model shows that hair cells behave as nonlinear oscillators that exhibit Hopf bifurcations, dynamical instabilities long understood to be signatures of the active process. Using realistic parameter values, we find bifurcations at frequencies in the kilohertz range with physiological Ca2+ concentrations. The current model relies on the electrochemical gradient of Ca2+ as the only energy source for the active process and on the relative motion of cooperative channels within the stereociliary membrane as the sole mechanical driver. Equipped with these two mechanisms, a hair bundle proves capable of operating at frequencies in the kilohertz range, characteristic of amniote hearing.
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Affiliation(s)
| | - Brenna Hogan
- Department of Bioengineering, Imperial College London, London, UK
| | - Émilien Dilly
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, Paris, France
| | - Thomas Risler
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, Paris, France.
| | - Andrei S Kozlov
- Department of Bioengineering, Imperial College London, London, UK.
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Complex dynamics of hair bundle of auditory nervous system (I): spontaneous oscillations and two cases of steady states. Cogn Neurodyn 2021; 16:917-940. [PMID: 35847540 PMCID: PMC9279547 DOI: 10.1007/s11571-021-09744-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 10/21/2021] [Accepted: 10/29/2021] [Indexed: 12/17/2022] Open
Abstract
The hair bundles of inner hair cells in the auditory nervous exhibit spontaneous oscillations, which is the prerequisite for an important auditory function to enhance the sensitivity of inner ear to weak sounds, otoacoustic emission. In the present paper, the dynamics of spontaneous oscillations and relationships to steady state are acquired in a two-dimensional model with fast variable X (displacement of hair bundles) and slow variable X a . The spontaneous oscillations are derived from negative stiffness modulated by two biological factors (S and D) and are identified to appear in multiple two-dimensional parameter planes. In (S, D) plane, comprehensive bifurcations including 4 types of codimension-2 bifurcation and 5 types of codimension-1 bifurcation related to the spontaneous oscillations are acquired. The spontaneous oscillations are surrounded by supercritical and subcritical Hopf bifurcation curves, and outside of the curves are two cases of steady state. Case-1 and Case-2 steady states exhibit Z-shaped (coexistence of X) and N-shaped (coexistence of X a ) X-nullclines, respectively. In (S, D) plane, left and right to the spontaneous oscillations are two subcases of Case-1, which exhibit the stable equilibrium point locating on the upper and lower branches of X-nullcline, respectively, resembling that of the neuron. Lower to the spontaneous oscillations are 3 subcases of Case-2 from left to right, which manifest stable equilibrium point locating on left, middle, and right branches of X-nullcline, respectively, differing from that of the neuron. The phase plane for steady state is divided into four parts by nullclines, which manifest different vector fields. The phase trajectory of transient behavior beginning from a phase point in the four regions to the stable equilibrium point exhibits different dynamics determined by the vector fields, which is the basis to identify dynamical mechanism of complex forced oscillations induced by external signal. The results present comprehensive viewpoint and deep understanding for dynamics of the spontaneous oscillations and steady states of hair bundles, which can be used to well explain the experimental observations and to modulate functions of spontaneous oscillations.
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Altoè A, Charaziak KK, Dewey JB, Moleti A, Sisto R, Oghalai JS, Shera CA. The Elusive Cochlear Filter: Wave Origin of Cochlear Cross-Frequency Masking. J Assoc Res Otolaryngol 2021; 22:623-640. [PMID: 34677710 DOI: 10.1007/s10162-021-00814-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 08/23/2021] [Indexed: 11/28/2022] Open
Abstract
The mammalian cochlea achieves its remarkable sensitivity, frequency selectivity, and dynamic range by spatially segregating the different frequency components of sound via nonlinear processes that remain only partially understood. As a consequence of the wave-based nature of cochlear processing, the different frequency components of complex sounds interact spatially and nonlinearly, mutually suppressing one another as they propagate. Because understanding nonlinear wave interactions and their effects on hearing appears to require mathematically complex or computationally intensive models, theories of hearing that do not deal specifically with cochlear mechanics have often neglected the spatial nature of suppression phenomena. Here we describe a simple framework consisting of a nonlinear traveling-wave model whose spatial response properties can be estimated from basilar-membrane (BM) transfer functions. Without invoking jazzy details of organ-of-Corti mechanics, the model accounts well for the peculiar frequency-dependence of suppression found in two-tone suppression experiments. In particular, our analysis shows that near the peak of the traveling wave, the amplitude of the BM response depends primarily on the nonlinear properties of the traveling wave in more basal (high-frequency) regions. The proposed framework provides perhaps the simplest representation of cochlear signal processing that accounts for the spatially distributed effects of nonlinear wave propagation. Shifting the perspective from local filters to non-local, spatially distributed processes not only elucidates the character of cochlear signal processing, but also has important consequences for interpreting psychophysical experiments.
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Affiliation(s)
- Alessandro Altoè
- Caruso Department of Otolaryngology Head & Neck Surgery, University of Southern California, CA, Los Angeles, USA.
| | - Karolina K Charaziak
- Caruso Department of Otolaryngology Head & Neck Surgery, University of Southern California, CA, Los Angeles, USA
| | - James B Dewey
- Caruso Department of Otolaryngology Head & Neck Surgery, University of Southern California, CA, Los Angeles, USA
| | - Arturo Moleti
- Department of Physics, University of Roma Tor Vergata, Rome, Italy
| | - Renata Sisto
- DIMEILA, INAIL, Monte Porzio Catone, Rome, Italy
| | - John S Oghalai
- Caruso Department of Otolaryngology Head & Neck Surgery, University of Southern California, CA, Los Angeles, USA
| | - Christopher A Shera
- Caruso Department of Otolaryngology Head & Neck Surgery, University of Southern California, CA, Los Angeles, USA.,Department of Physics and Astronomy, University of Southern California, Los Angeles, CA, USA
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13
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Xu Y, Asadi-Zeydabadi M, Tagg R, Shindell O. Universality in kinetic models of circadian rhythms in [Formula: see text]. J Math Biol 2021; 83:51. [PMID: 34657966 DOI: 10.1007/s00285-021-01677-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 07/20/2021] [Accepted: 10/06/2021] [Indexed: 11/26/2022]
Abstract
Biological evolution has endowed the plant Arabidopsis thaliana with genetically regulated circadian rhythms. A number of authors have published kinetic models for these oscillating chemical reactions based on a network of interacting genes. To investigate the hypothesis that the Arabidopsis circadian dynamical system is poised near a Hopf bifurcation like some other biological oscillators, we varied the kinetic parameters in the models and searched for bifurcations. Finding that each model does exhibit a supercritical Hopf bifurcation, we performed a weakly nonlinear analysis near the bifurcation points to derive the Stuart-Landau amplitude equation. To illustrate a common dynamical structure, we scaled the numerical solutions to the models with the asymptotic solutions to the Stuart-Landau equation to collapse the circadian oscillations onto two universal curves-one for amplitude, and one for frequency. However, some models are close to bifurcation while others are far, some models are post-bifurcation while others are pre-bifurcation, and kinetic parameters that lead to a bifurcation in some models do not lead to a bifurcation in others. Future kinetic modeling can make use of our analysis to ensure models are consistent with each other and with the dynamics of the Arabidopsis circadian rhythm.
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Affiliation(s)
- Yian Xu
- Physics and Astronomy, Trinity University, San Antonio, TX, 78212, USA
| | | | - Randall Tagg
- Physics, University of Colorado Denver, Denver, CO, 80203, USA
| | - Orrin Shindell
- Physics and Astronomy, Trinity University, San Antonio, TX, 78212, USA.
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14
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Berger J, Rubinstein J. A flexible anatomical set of mechanical models for the organ of Corti. ROYAL SOCIETY OPEN SCIENCE 2021; 8:210016. [PMID: 34540242 PMCID: PMC8441134 DOI: 10.1098/rsos.210016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
We build a flexible platform to study the mechanical operation of the organ of Corti (OoC) in the transduction of basilar membrane (BM) vibrations to oscillations of an inner hair cell bundle (IHB). The anatomical components that we consider are the outer hair cells (OHCs), the outer hair cell bundles, Deiters cells, Hensen cells, the IHB and various sections of the reticular lamina. In each of the components we apply Newton's equations of motion. The components are coupled to each other and are further coupled to the endolymph fluid motion in the subtectorial gap. This allows us to obtain the forces acting on the IHB, and thus study its motion as a function of the parameters of the different components. Some of the components include a nonlinear mechanical response. We find that slight bending of the apical ends of the OHCs can have a significant impact on the passage of motion from the BM to the IHB, including critical oscillator behaviour. In particular, our model implies that the components of the OoC could cooperate to enhance frequency selectivity, amplitude compression and signal to noise ratio in the passage from the BM to the IHB. Since the model is modular, it is easy to modify the assumptions and parameters for each component.
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Affiliation(s)
- Jorge Berger
- Department of Physics and Optical Engineering, Ort Braude College, Karmiel, Israel
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15
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Vennettilli M, Erez A, Mugler A. Multicellular sensing at a feedback-induced critical point. Phys Rev E 2020; 102:052411. [PMID: 33327087 DOI: 10.1103/physreve.102.052411] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 10/06/2020] [Indexed: 11/07/2022]
Abstract
Feedback in sensory biochemical networks can give rise to bifurcations in cells' behavioral response. These bifurcations share many properties with thermodynamic critical points. Evidence suggests that biological systems may operate near these critical points, but the functional benefit of doing so remains poorly understood. Here we investigate a simple biochemical model with nonlinear feedback and multicellular communication to determine if criticality provides a functional benefit in terms of the ability to gain information about a stochastic chemical signal. We find that when signal fluctuations are slow, the mutual information between the signal and the intracellular readout is maximized at criticality, because the benefit of high signal susceptibility outweighs the detriment of high readout noise. When cells communicate, criticality gives rise to long-range correlations in readout molecule number among cells. Consequently, we find that communication increases the mutual information between a given cell's readout and the spatial average of the signal across the population. Finally, we find that both with and without communication, the sensory benefits of criticality compete with critical slowing down, such that the information rate, as opposed to the information itself, is minimized at the critical point. Our results reveal the costs and benefits of feedback-induced criticality for multicellular sensing.
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Affiliation(s)
- Michael Vennettilli
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Amir Erez
- Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA
- The Racah Institute of Physics, Hebrew University, Jerusalem 91904, Israel
| | - Andrew Mugler
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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16
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Edri Y, Meron E, Yochelis A. Spatial heterogeneity may form an inverse camel shaped Arnol'd tongue in parametrically forced oscillations. CHAOS (WOODBURY, N.Y.) 2020; 30:023120. [PMID: 32113250 DOI: 10.1063/1.5130618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 01/23/2020] [Indexed: 06/10/2023]
Abstract
Frequency locking in forced oscillatory systems typically organizes in "V"-shaped domains in the plane spanned by the forcing frequency and amplitude, the so-called Arnol'd tongues. Here, we show that if the medium is spatially extended and monotonically heterogeneous, e.g., through spatially dependent natural frequency, the resonance tongues can also display "U" and "W" shapes; we refer to the latter as an "inverse camel" shape. We study the generic forced complex Ginzburg-Landau equation for damped oscillations under parametric forcing and, using linear stability analysis and numerical simulations, uncover the mechanisms that lead to these distinct resonance shapes. Additionally, we study the effects of discretization by exploring frequency locking of oscillator chains. Since we study a normal-form equation, the results are model-independent near the onset of oscillations and, therefore, applicable to inherently heterogeneous systems in general, such as the cochlea. The results are also applicable to controlling technological performances in various contexts, such as arrays of mechanical resonators, catalytic surface reactions, and nonlinear optics.
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Affiliation(s)
- Yuval Edri
- Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Ehud Meron
- Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Arik Yochelis
- Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
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17
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Altoè A, Shera CA. Nonlinear cochlear mechanics without direct vibration-amplification feedback. PHYSICAL REVIEW RESEARCH 2020; 2:013218. [PMID: 33403361 PMCID: PMC7781069 DOI: 10.1103/physrevresearch.2.013218] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Recent in vivo recordings from the mammalian cochlea indicate that although the motion of the basilar membrane appears actively amplified and nonlinear only at frequencies relatively close to the peak of the response, the internal motions of the organ of Corti display these same features over a much wider range of frequencies. These experimental findings are not easily explained by the textbook view of cochlear mechanics, in which cochlear amplification is controlled by the motion of the basilar membrane (BM) in a tight, closed-loop feedback configuration. This study shows that a simple phenomenological model of the cochlea inspired by the work of Zweig [J. Acoust. Soc. Am. 138, 1102 (2015)] can account for recent data in mouse and gerbil. In this model, the active forces are regulated indirectly, through the effect of BM motion on the pressure field across the cochlear partition, rather than via direct coupling between active-force generation and BM vibration. The absence of strong vibration-amplification feedback in the cochlea also provides a compelling explanation for the observed intensity invariance of fine time structure in the BM response to acoustic clicks.
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Affiliation(s)
| | - Christopher A. Shera
- Auditory Research Center, Caruso Department of Otolaryngology, University of Southern California, Los Angeles, California 90033, USA
- Department of Physics & Astronomy, University of Southern California, California 90089, USA
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18
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Ammari H, Davies B. Mimicking the active cochlea with a fluid-coupled array of subwavelength Hopf resonators. Proc Math Phys Eng Sci 2020. [DOI: 10.1098/rspa.2019.0870] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
We present a design for an acoustic metamaterial that mimics the behaviour of the active cochlea. This material is composed of a size-graded array of cylindrical subwavelength resonators, has similar dimensions to the cochlea and is able to per- form frequency separation of audible frequencies. Nonlinear amplification is introduced to the model in order to replicate the behaviour of the cochlear amplifier. This formulation takes the form of a fluid-coupled array of Hopf resonators. We seek solutions in the form of a modal decomposition, so as to retain the physically derived coupling between resonators.
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Affiliation(s)
- Habib Ammari
- Department of Mathematics, ETH Zürich, Rämistrasse 101, 8092 Zürich, Switzerland
| | - Bryn Davies
- Department of Mathematics, ETH Zürich, Rämistrasse 101, 8092 Zürich, Switzerland
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19
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Jackson Z, Wiesenfeld K. Dynamics of tinnitus and coordinated reset therapy. Phys Rev E 2019; 99:052403. [PMID: 31212443 DOI: 10.1103/physreve.99.052403] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Indexed: 11/07/2022]
Abstract
A clinical study of tinnitus patients found promising results using a noninvasive therapy. We introduce a dynamical model to explore both the onset of tinnitus and the effects of coordinated reset therapy. Our model extends an existing theory of individual outer hair cell dynamics to include their mutual interaction, and considers how sustained activity can inhibit the natural recovery exhibited by normal (healthy) individuals. The model is investigated through numerical simulations and shows behavior broadly similar to that reported in the clinical study.
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Affiliation(s)
- Zachary Jackson
- School of Physics, Georgia Institute of Technology, Atlanta 30332, Georgia, USA
| | - Kurt Wiesenfeld
- School of Physics, Georgia Institute of Technology, Atlanta 30332, Georgia, USA
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20
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Lerud KD, Kim JC, Almonte FV, Carney LH, Large EW. A canonical oscillator model of cochlear dynamics. Hear Res 2019; 380:100-107. [PMID: 31234108 DOI: 10.1016/j.heares.2019.06.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 05/06/2019] [Accepted: 06/12/2019] [Indexed: 11/27/2022]
Abstract
Nonlinear responses to acoustic signals arise through active processes in the cochlea, which has an exquisite sensitivity and wide dynamic range that can be explained by critical nonlinear oscillations of outer hair cells. Here we ask how the interaction of critical nonlinearities with the basilar membrane and other organ of Corti components could determine tuning properties of the mammalian cochlea. We propose a canonical oscillator model that captures the dynamics of the interaction between the basilar membrane and organ of Corti, using a pair of coupled oscillators for each place along the cochlea. We analyze two models in which a linear oscillator, representing basilar membrane dynamics, is coupled to a nonlinear oscillator poised at a Hopf instability. The coupling in the first model is unidirectional, and that of the second is bidirectional. Parameters are determined by fitting 496 auditory-nerve (AN) tuning curves of macaque monkeys. We find that the unidirectionally and bidirectionally coupled models account equally well for threshold tuning. In addition, however, the bidirectionally coupled model exhibits low-amplitude, spontaneous oscillation in the absence of stimulation, predicting that phase locking will occur before a significant increase in firing frequency, in accordance with well known empirical observations. This leads us to a canonical oscillator cochlear model based on the fundamental principles of critical nonlinear oscillation and coupling dynamics. The model is more biologically realistic than widely used linear or nonlinear filter-based models, yet parsimoniously displays key features of nonlinear mechanistic models. It is efficient enough for computational studies of auditory perception and auditory physiology.
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Affiliation(s)
- Karl D Lerud
- Department of Psychological Sciences, University of Connecticut, Storrs, CT, USA
| | - Ji Chul Kim
- Department of Psychological Sciences, University of Connecticut, Storrs, CT, USA
| | - Felix V Almonte
- Center for Complex Systems and Brain Sciences, Florida Atlantic University, Boca Raton, FL, USA
| | - Laurel H Carney
- Biomedical Engineering and Neurobiology & Anatomy, University of Rochester, Rochester, NY, USA
| | - Edward W Large
- Department of Psychological Sciences, University of Connecticut, Storrs, CT, USA.
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21
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Bowling T, Lemons C, Meaud J. Reducing tectorial membrane viscoelasticity enhances spontaneous otoacoustic emissions and compromises the detection of low level sound. Sci Rep 2019; 9:7494. [PMID: 31097743 PMCID: PMC6522542 DOI: 10.1038/s41598-019-43970-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Accepted: 05/02/2019] [Indexed: 01/08/2023] Open
Abstract
The mammalian cochlea is able to detect faint sounds due to the presence of an active nonlinear feedback mechanism that boosts cochlear vibrations of low amplitude. Because of this feedback, self-sustained oscillations called spontaneous otoacoustic emissions (SOAEs) can often be measured in the ear canal. Recent experiments in genetically modified mice have demonstrated that mutations of the genes expressed in the tectorial membrane (TM), an extracellular matrix located in the cochlea, can significantly enhance the generation of SOAEs. Multiple untested mechanisms have been proposed to explain these unexpected results. In this work, a physiologically motivated computational model of a mammalian species commonly studied in auditory research, the gerbil, is used to demonstrate that altering the viscoelastic properties of the TM tends to affect the linear stability of the cochlea, SOAE generation and the cochlear response to low amplitude stimuli. These results suggest that changes in TM properties might be the underlying cause for SOAE enhancement in some mutant mice. Furthermore, these theoretical findings imply that the TM contributes to keeping the mammalian cochlea near an oscillatory instability, which promotes high sensitivity and the detection of low level stimuli.
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Affiliation(s)
- Thomas Bowling
- G.W.W. School of Mechanical Engineering, Georgia Institute of Technology, 771 Ferst Drive NW, Atlanta, Georgia, 30332, USA
| | - Charlsie Lemons
- G.W.W. School of Mechanical Engineering, Georgia Institute of Technology, 771 Ferst Drive NW, Atlanta, Georgia, 30332, USA
| | - Julien Meaud
- G.W.W. School of Mechanical Engineering, Georgia Institute of Technology, 771 Ferst Drive NW, Atlanta, Georgia, 30332, USA. .,Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
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22
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Tobin M, Chaiyasitdhi A, Michel V, Michalski N, Martin P. Stiffness and tension gradients of the hair cell's tip-link complex in the mammalian cochlea. eLife 2019; 8:e43473. [PMID: 30932811 PMCID: PMC6464607 DOI: 10.7554/elife.43473] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Accepted: 03/27/2019] [Indexed: 11/23/2022] Open
Abstract
Sound analysis by the cochlea relies on frequency tuning of mechanosensory hair cells along a tonotopic axis. To clarify the underlying biophysical mechanism, we have investigated the micromechanical properties of the hair cell's mechanoreceptive hair bundle within the apical half of the rat cochlea. We studied both inner and outer hair cells, which send nervous signals to the brain and amplify cochlear vibrations, respectively. We find that tonotopy is associated with gradients of stiffness and resting mechanical tension, with steeper gradients for outer hair cells, emphasizing the division of labor between the two hair-cell types. We demonstrate that tension in the tip links that convey force to the mechano-electrical transduction channels increases at reduced Ca2+. Finally, we reveal gradients in stiffness and tension at the level of a single tip link. We conclude that mechanical gradients of the tip-link complex may help specify the characteristic frequency of the hair cell.
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Affiliation(s)
- Mélanie Tobin
- Laboratoire Physico-Chimie CurieInstitut Curie, PSL Research University, CNRS UMR168ParisFrance
- Sorbonne UniversitéParisFrance
| | - Atitheb Chaiyasitdhi
- Laboratoire Physico-Chimie CurieInstitut Curie, PSL Research University, CNRS UMR168ParisFrance
- Sorbonne UniversitéParisFrance
| | - Vincent Michel
- Sorbonne UniversitéParisFrance
- Laboratoire de Génétique et Physiologie de l’AuditionInstitut PasteurParisFrance
- UMRS 1120, Institut National de la Santé et de la Recherche Médicale (INSERM)ParisFrance
| | - Nicolas Michalski
- Sorbonne UniversitéParisFrance
- Laboratoire de Génétique et Physiologie de l’AuditionInstitut PasteurParisFrance
- UMRS 1120, Institut National de la Santé et de la Recherche Médicale (INSERM)ParisFrance
| | - Pascal Martin
- Laboratoire Physico-Chimie CurieInstitut Curie, PSL Research University, CNRS UMR168ParisFrance
- Sorbonne UniversitéParisFrance
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23
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Barral J, Jülicher F, Martin P. Friction from Transduction Channels' Gating Affects Spontaneous Hair-Bundle Oscillations. Biophys J 2019; 114:425-436. [PMID: 29401440 DOI: 10.1016/j.bpj.2017.11.019] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Revised: 10/31/2017] [Accepted: 11/14/2017] [Indexed: 11/16/2022] Open
Abstract
Hair cells of the inner ear can power spontaneous oscillations of their mechanosensory hair bundle, resulting in amplification of weak inputs near the characteristic frequency of oscillation. Recently, dynamic force measurements have revealed that delayed gating of the mechanosensitive ion channels responsible for mechanoelectrical transduction produces a friction force on the hair bundle. The significance of this intrinsic source of dissipation for the dynamical process underlying active hair-bundle motility has remained elusive. The aim of this work is to determine the role of friction in spontaneous hair-bundle oscillations. To this end, we characterized key oscillation properties over a large ensemble of individual hair cells and measured how viscosity of the endolymph that bathes the hair bundles affects these properties. We found that hair-bundle movements were too slow to be impeded by viscous drag only. Moreover, the oscillation frequency was only marginally affected by increasing endolymph viscosity by up to 30-fold. Stochastic simulations could capture the observed behaviors by adding a contribution to friction that was 3-8-fold larger than viscous drag. The extra friction could be attributed to delayed changes in tip-link tension as the result of the finite activation kinetics of the transduction channels. We exploited our analysis of hair-bundle dynamics to infer the channel activation time, which was ∼1 ms. This timescale was two orders-of-magnitude shorter than the oscillation period. However, because the channel activation time was significantly longer than the timescale of mechanical relaxation of the hair bundle, channel kinetics affected hair-bundle dynamics. Our results suggest that friction from channel gating affects the waveform of oscillation and that the channel activation time can tune the characteristic frequency of the hair cell. We conclude that the kinetics of transduction channels' gating plays a fundamental role in the dynamic process that shapes spontaneous hair-bundle oscillations.
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Affiliation(s)
- Jérémie Barral
- Laboratoire Physico-Chimie Curie, Institut Curie, PSL Research University, CNRS, UMR168, Paris, France; UPMC Université Paris 06, Sorbonne Universités, Paris, France
| | - Frank Jülicher
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany; Kavli Institute for Theoretical Physics, University of California-Santa Barbara, Santa Barbara, California
| | - Pascal Martin
- Laboratoire Physico-Chimie Curie, Institut Curie, PSL Research University, CNRS, UMR168, Paris, France; UPMC Université Paris 06, Sorbonne Universités, Paris, France; Kavli Institute for Theoretical Physics, University of California-Santa Barbara, Santa Barbara, California.
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24
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Edri Y, Bozovic D, Meron E, Yochelis A. Molding the asymmetry of localized frequency-locking waves by a generalized forcing and implications to the inner ear. Phys Rev E 2018; 98:020202. [PMID: 30253571 DOI: 10.1103/physreve.98.020202] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Indexed: 11/07/2022]
Abstract
Frequency locking to an external forcing frequency is a well-known phenomenon. In the auditory system, it results in a localized traveling wave, the shape of which is essential for efficient discrimination between incoming frequencies. An amplitude equation approach is used to show that the shape of the localized traveling wave depends crucially on the relative strength of additive versus parametric forcing components; the stronger the parametric forcing, the more asymmetric is the response profile and the sharper is the traveling-wave front. The analysis qualitatively captures the empirically observed regions of linear and nonlinear responses and highlights the potential significance of parametric forcing mechanisms in shaping the resonant response in the inner ear.
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Affiliation(s)
- Yuval Edri
- Department of Solar Energy and Environmental Physics, Swiss Institute for Dryland Environmental and Energy Research, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000 Midreshet Ben-Gurion, Israel
| | - Dolores Bozovic
- Department of Physics and Astronomy and California NanoSystems Institute, University of California Los Angeles, Los Angeles, California 90095, USA
| | - Ehud Meron
- Department of Solar Energy and Environmental Physics, Swiss Institute for Dryland Environmental and Energy Research, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000 Midreshet Ben-Gurion, Israel.,Department of Physics, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
| | - Arik Yochelis
- Department of Solar Energy and Environmental Physics, Swiss Institute for Dryland Environmental and Energy Research, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000 Midreshet Ben-Gurion, Israel.,Department of Physics, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
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25
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Manley GA. Travelling waves and tonotopicity in the inner ear: a historical and comparative perspective. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2018; 204:773-781. [PMID: 30116889 DOI: 10.1007/s00359-018-1279-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Revised: 07/10/2018] [Accepted: 07/11/2018] [Indexed: 12/22/2022]
Abstract
In the 1940s, Georg von Békésy discovered that in the inner ear of cadavers of various vertebrates, structures responded to sound with a displacement wave that travels in a basal-to-apical direction. This historical review examines this concept and sketches its rôle and significance in the development of the research field of cochlear mechanics. It also illustrates that this concept and that of tonotopicity necessarily correlate, in that travelling waves are consequences of the existence of an ordered, longitudinal array of receptor cells tuned to systematically changing frequencies along the auditory organ.
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Affiliation(s)
- Geoffrey A Manley
- Cochlear and Auditory Brainstem Physiology, Department of Neuroscience, School of Medicine and Health Sciences, Cluster of Excellence "Hearing4all", Research Centre Neurosensory Science, Carl von Ossietzky University Oldenburg, 26129, Oldenburg, Germany.
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26
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Albert JT, Kozlov AS. Comparative Aspects of Hearing in Vertebrates and Insects with Antennal Ears. Curr Biol 2017; 26:R1050-R1061. [PMID: 27780047 DOI: 10.1016/j.cub.2016.09.017] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The evolution of hearing in terrestrial animals has resulted in remarkable adaptations enabling exquisitely sensitive sound detection by the ear and sophisticated sound analysis by the brain. In this review, we examine several such characteristics, using examples from insects and vertebrates. We focus on two strong and interdependent forces that have been shaping the auditory systems across taxa: the physical environment of auditory transducers on the small, subcellular scale, and the sensory-ecological environment within which hearing happens, on a larger, evolutionary scale. We briefly discuss acoustical feature selectivity and invariance in the central auditory system, highlighting a major difference between insects and vertebrates as well as a major similarity. Through such comparisons within a sensory ecological framework, we aim to emphasize general principles underlying acute sensitivity to airborne sounds.
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Affiliation(s)
- Joerg T Albert
- UCL Ear Institute, 332 Gray's Inn Road, London WC1X 8EE, UK.
| | - Andrei S Kozlov
- Department of Bioengineering, Imperial College London, London SW7 2AZ, UK.
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27
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Chambers AR, Pilati N, Balaram P, Large CH, Kaczmarek LK, Polley DB. Pharmacological modulation of Kv3.1 mitigates auditory midbrain temporal processing deficits following auditory nerve damage. Sci Rep 2017; 7:17496. [PMID: 29235497 PMCID: PMC5727503 DOI: 10.1038/s41598-017-17406-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Accepted: 11/20/2017] [Indexed: 12/12/2022] Open
Abstract
Higher stages of central auditory processing compensate for a loss of cochlear nerve synapses by increasing the gain on remaining afferent inputs, thereby restoring firing rate codes for rudimentary sound features. The benefits of this compensatory plasticity are limited, as the recovery of precise temporal coding is comparatively modest. We reasoned that persistent temporal coding deficits could be ameliorated through modulation of voltage-gated potassium (Kv) channels that regulate temporal firing patterns. Here, we characterize AUT00063, a pharmacological compound that modulates Kv3.1, a high-threshold channel expressed in fast-spiking neurons throughout the central auditory pathway. Patch clamp recordings from auditory brainstem neurons and in silico modeling revealed that application of AUT00063 reduced action potential timing variability and improved temporal coding precision. Systemic injections of AUT00063 in vivo improved auditory synchronization and supported more accurate decoding of temporal sound features in the inferior colliculus and auditory cortex in adult mice with a near-complete loss of auditory nerve afferent synapses in the contralateral ear. These findings suggest modulating Kv3.1 in central neurons could be a promising therapeutic approach to mitigate temporal processing deficits that commonly accompany aging, tinnitus, ototoxic drug exposure or noise damage.
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Affiliation(s)
- Anna R Chambers
- Eaton-Peabody Laboratories, Massachusetts Eye and Ear Infirmary, Boston, MA, USA.,Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway
| | - Nadia Pilati
- Autifony SRL, Verona, Italy; and Autifony Therapeutics Limited, Imperial College Incubator, London, UK
| | - Pooja Balaram
- Eaton-Peabody Laboratories, Massachusetts Eye and Ear Infirmary, Boston, MA, USA.,Department of Otolaryngology, Harvard Medical School, Boston, MA, USA
| | - Charles H Large
- Autifony SRL, Verona, Italy; and Autifony Therapeutics Limited, Imperial College Incubator, London, UK
| | - Leonard K Kaczmarek
- Departments of Pharmacology and Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA
| | - Daniel B Polley
- Eaton-Peabody Laboratories, Massachusetts Eye and Ear Infirmary, Boston, MA, USA. .,Department of Otolaryngology, Harvard Medical School, Boston, MA, USA.
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28
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Guevara Erra R, Perez Velazquez JL, Rosenblum M. Neural Synchronization from the Perspective of Non-linear Dynamics. Front Comput Neurosci 2017; 11:98. [PMID: 29123478 PMCID: PMC5662639 DOI: 10.3389/fncom.2017.00098] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 10/09/2017] [Indexed: 11/21/2022] Open
Affiliation(s)
- Ramon Guevara Erra
- Laboratoire Psychologie de la Perception, Centre National de la Recherche Scientifique and Université Paris Descartes, Sorbonne Paris Cité, Paris, France
| | - Jose L Perez Velazquez
- Neuroscience and Mental Health Programme and Division of Neurology, Department of Paediatrics, The Ronin Institute, Institute of Medical Science, Hospital for Sick Children, University of Toronto, Toronto, ON, Canada
| | - Michael Rosenblum
- Department of Physics and Astronomy, University of Potsdam, Potsdam, Germany
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29
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Abstract
Our sense of hearing boasts exquisite sensitivity, precise frequency discrimination, and a broad dynamic range. Experiments and modeling imply, however, that the auditory system achieves this performance for only a narrow range of parameter values. Small changes in these values could compromise hair cells' ability to detect stimuli. We propose that, rather than exerting tight control over parameters, the auditory system uses a homeostatic mechanism that increases the robustness of its operation to variation in parameter values. To slowly adjust the response to sinusoidal stimulation, the homeostatic mechanism feeds back a rectified version of the hair bundle's displacement to its adaptation process. When homeostasis is enforced, the range of parameter values for which the sensitivity, tuning sharpness, and dynamic range exceed specified thresholds can increase by more than an order of magnitude. Signatures in the hair cell's behavior provide a means to determine through experiment whether such a mechanism operates in the auditory system. Robustness of function through homeostasis may be ensured in any system through mechanisms similar to those that we describe here.
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30
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Salvi JD, Ó Maoiléidigh D, Hudspeth AJ. Identification of Bifurcations from Observations of Noisy Biological Oscillators. Biophys J 2017; 111:798-812. [PMID: 27558723 PMCID: PMC5002087 DOI: 10.1016/j.bpj.2016.07.027] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2016] [Revised: 07/20/2016] [Accepted: 07/22/2016] [Indexed: 01/06/2023] Open
Abstract
Hair bundles are biological oscillators that actively transduce mechanical stimuli into electrical signals in the auditory, vestibular, and lateral-line systems of vertebrates. A bundle’s function can be explained in part by its operation near a particular type of bifurcation, a qualitative change in behavior. By operating near different varieties of bifurcation, the bundle responds best to disparate classes of stimuli. We show how to determine the identity of and proximity to distinct bifurcations despite the presence of substantial environmental noise. Using an improved mechanical-load clamp to coerce a hair bundle to traverse different bifurcations, we find that a bundle operates within at least two functional regimes. When coupled to a high-stiffness load, a bundle functions near a supercritical Hopf bifurcation, in which case it responds best to sinusoidal stimuli such as those detected by an auditory organ. When the load stiffness is low, a bundle instead resides close to a subcritical Hopf bifurcation and achieves a graded frequency response—a continuous change in the rate, but not the amplitude, of spiking in response to changes in the offset force—a behavior that is useful in a vestibular organ. The mechanical load in vivo might therefore control a hair bundle’s responsiveness for effective operation in a particular receptor organ. Our results provide direct experimental evidence for the existence of distinct bifurcations associated with a noisy biological oscillator, and demonstrate a general strategy for bifurcation analysis based on observations of any noisy system.
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Affiliation(s)
- Joshua D Salvi
- Laboratory of Sensory Neuroscience, The Rockefeller University, New York, New York
| | | | - A J Hudspeth
- Laboratory of Sensory Neuroscience, The Rockefeller University, New York, New York; Howard Hughes Medical Institute, The Rockefeller University, New York, New York.
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31
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Kim JC. A Dynamical Model of Pitch Memory Provides an Improved Basis for Implied Harmony Estimation. Front Psychol 2017; 8:666. [PMID: 28522983 PMCID: PMC5415596 DOI: 10.3389/fpsyg.2017.00666] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2017] [Accepted: 04/12/2017] [Indexed: 11/16/2022] Open
Abstract
Tonal melody can imply vertical harmony through a sequence of tones. Current methods for automatic chord estimation commonly use chroma-based features extracted from audio signals. However, the implied harmony of unaccompanied melodies can be difficult to estimate on the basis of chroma content in the presence of frequent nonchord tones. Here we present a novel approach to automatic chord estimation based on the human perception of pitch sequences. We use cohesion and inhibition between pitches in auditory short-term memory to differentiate chord tones and nonchord tones in tonal melodies. We model short-term pitch memory as a gradient frequency neural network, which is a biologically realistic model of auditory neural processing. The model is a dynamical system consisting of a network of tonotopically tuned nonlinear oscillators driven by audio signals. The oscillators interact with each other through nonlinear resonance and lateral inhibition, and the pattern of oscillatory traces emerging from the interactions is taken as a measure of pitch salience. We test the model with a collection of unaccompanied tonal melodies to evaluate it as a feature extractor for chord estimation. We show that chord tones are selectively enhanced in the response of the model, thereby increasing the accuracy of implied harmony estimation. We also find that, like other existing features for chord estimation, the performance of the model can be improved by using segmented input signals. We discuss possible ways to expand the present model into a full chord estimation system within the dynamical systems framework.
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Affiliation(s)
- Ji Chul Kim
- Department of Psychological Sciences, University of ConnecticutStorrs, CT, USA.,Oscilloscape LLCEast Hartford, CT, USA
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Edri Y, Bozovic D, Yochelis A. Frequency locking in auditory hair cells: Distinguishing between additive and parametric forcing. EUROPHYSICS LETTERS 2016; 116:28002. [PMID: 33859450 PMCID: PMC8046175 DOI: 10.1209/0295-5075/116/28002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
- The auditory system displays remarkable sensitivity and frequency discrimination, attributes shown to rely on an amplification process that involves a mechanical as well as a biochemical response. Models that display proximity to an oscillatory onset (also known as Hopf bifurcation) exhibit a resonant response to distinct frequencies of incoming sound, and can explain many features of the amplification phenomenology. To understand the dynamics of this resonance, frequency locking is examined in a system near the Hopf bifurcation and subject to two types of driving forces: additive and parametric. Derivation of a universal amplitude equation that contains both forcing terms enables a study of their relative impact on the hair cell response. In the parametric case, although the resonant solutions are 1 : 1 frequency locked, they show the coexistence of solutions obeying a phase shift of π, a feature typical of the 2 : 1 resonance. Different characteristics are predicted for the transition from unlocked to locked solutions, leading to smooth or abrupt dynamics in response to different types of forcing. The theoretical framework provides a more realistic model of the auditory system, which incorporates a direct modulation of the internal control parameter by an applied drive. The results presented here can be generalized to many other media, including Faraday waves, chemical reactions, and elastically driven cardiomyocytes, which are known to exhibit resonant behavior.
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Affiliation(s)
- Yuval Edri
- Department of Physics, Ben-Gurion University of the Negev - Beer-Sheva, Israel
- Physics Department, Nuclear Research Center Negev - P.O. Box 9001, Beer-Sheva 84190, Israel
| | - Dolores Bozovic
- Department of Physics and Astronomy and California NanoSystems Institute, University of California Los Angeles Los Angeles, CA, 90025, USA
| | - Arik Yochelis
- Department of Solar Energy and Environmental Physics, Swiss Institute for Dryland Environmental and Energy Research, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 8499000 Midreshet Ben-Gurion, Israel
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Minati L, de Candia A, Scarpetta S. Critical phenomena at a first-order phase transition in a lattice of glow lamps: Experimental findings and analogy to neural activity. CHAOS (WOODBURY, N.Y.) 2016; 26:073103. [PMID: 27475063 DOI: 10.1063/1.4954879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Networks of non-linear electronic oscillators have shown potential as physical models of neural dynamics. However, two properties of brain activity, namely, criticality and metastability, remain under-investigated with this approach. Here, we present a simple circuit that exhibits both phenomena. The apparatus consists of a two-dimensional square lattice of capacitively coupled glow (neon) lamps. The dynamics of lamp breakdown (flash) events are controlled by a DC voltage globally connected to all nodes via fixed resistors. Depending on this parameter, two phases having distinct event rate and degree of spatiotemporal order are observed. The transition between them is hysteretic, thus a first-order one, and it is possible to enter a metastability region, wherein, approaching a spinodal point, critical phenomena emerge. Avalanches of events occur according to power-law distributions having exponents ≈3/2 for size and ≈2 for duration, and fractal structure is evident as power-law scaling of the Fano factor. These critical exponents overlap observations in biological neural networks; hence, this circuit may have value as building block to realize corresponding physical models.
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Affiliation(s)
- Ludovico Minati
- Center for Mind/Brain Sciences, University of Trento, 38123 Mattarello, Italy
| | - Antonio de Candia
- Department of Physics "E. Pancini," University of Naples "Federico II," Napoli, Italy
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Kim JC, Large EW. Signal Processing in Periodically Forced Gradient Frequency Neural Networks. Front Comput Neurosci 2015; 9:152. [PMID: 26733858 PMCID: PMC4689852 DOI: 10.3389/fncom.2015.00152] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Accepted: 12/10/2015] [Indexed: 11/25/2022] Open
Abstract
Oscillatory instability at the Hopf bifurcation is a dynamical phenomenon that has been suggested to characterize active non-linear processes observed in the auditory system. Networks of oscillators poised near Hopf bifurcation points and tuned to tonotopically distributed frequencies have been used as models of auditory processing at various levels, but systematic investigation of the dynamical properties of such oscillatory networks is still lacking. Here we provide a dynamical systems analysis of a canonical model for gradient frequency neural networks driven by a periodic signal. We use linear stability analysis to identify various driven behaviors of canonical oscillators for all possible ranges of model and forcing parameters. The analysis shows that canonical oscillators exhibit qualitatively different sets of driven states and transitions for different regimes of model parameters. We classify the parameter regimes into four main categories based on their distinct signal processing capabilities. This analysis will lead to deeper understanding of the diverse behaviors of neural systems under periodic forcing and can inform the design of oscillatory network models of auditory signal processing.
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Affiliation(s)
- Ji Chul Kim
- Department of Psychological Sciences, University of Connecticut Storrs, CT, USA
| | - Edward W Large
- Department of Psychological Sciences, University of Connecticut Storrs, CT, USA
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Power dissipation in the subtectorial space of the mammalian cochlea is modulated by inner hair cell stereocilia. Biophys J 2015; 108:479-88. [PMID: 25650916 DOI: 10.1016/j.bpj.2014.12.027] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2014] [Revised: 11/26/2014] [Accepted: 12/15/2014] [Indexed: 10/24/2022] Open
Abstract
The stereocilia bundle is the mechano-transduction apparatus of the inner ear. In the mammalian cochlea, the stereocilia bundles are situated in the subtectorial space (STS)--a micrometer-thick space between two flat surfaces vibrating relative to each other. Because microstructures vibrating in fluid are subject to high-viscous friction, previous studies considered the STS as the primary place of energy dissipation in the cochlea. Although there have been extensive studies on how metabolic energy is used to compensate the dissipation, much less attention has been paid to the mechanism of energy dissipation. Using a computational model, we investigated the power dissipation in the STS. The model simulates fluid flow around the inner hair cell (IHC) stereocilia bundle. The power dissipation in the STS because of the presence IHC stereocilia increased as the stimulating frequency decreased. Along the axis of the stimulating frequency, there were two asymptotic values of power dissipation. At high frequencies, the power dissipation was determined by the shear friction between the two flat surfaces of the STS. At low frequencies, the power dissipation was dominated by the viscous friction around the IHC stereocilia bundle--the IHC stereocilia increased the STS power dissipation by 50- to 100-fold. There exists a characteristic frequency for STS power dissipation, CFSTS, defined as the frequency where power dissipation drops to one-half of the low frequency value. The IHC stereocilia stiffness and the gap size between the IHC stereocilia and the tectorial membrane determine the characteristic frequency. In addition to the generally assumed shear flow, nonshear STS flow patterns were simulated. Different flow patterns have little effect on the CFSTS. When the mechano-transduction of the IHC was tuned near the vibrating frequency, the active motility of the IHC stereocilia bundle reduced the power dissipation in the STS.
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Abstract
It is pointed out that the mystery of how biological systems measure their lengths vanishes away if one premises that they have discovered a way to generate linear waves analogous to compressional sound. These can be used to detect length at either large or small scales using echo timing and fringe counting. It is shown that suitable linear chemical potential waves can, in fact, be manufactured by tuning to criticality conventional reaction-diffusion with a small number substance. Min oscillations in Escherichia coli are cited as precedent resonant length measurement using chemical potential waves analogous to laser detection. Mitotic structures in eukaryotes are identified as candidates for such an effect at higher frequency. The engineering principle is shown to be very general and functionally the same as that used by hearing organs.
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Solovey G, Alonso LM, Yanagawa T, Fujii N, Magnasco MO, Cecchi GA, Proekt A. Loss of Consciousness Is Associated with Stabilization of Cortical Activity. J Neurosci 2015; 35:10866-77. [PMID: 26224868 PMCID: PMC4518057 DOI: 10.1523/jneurosci.4895-14.2015] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Revised: 06/04/2015] [Accepted: 06/11/2015] [Indexed: 11/21/2022] Open
Abstract
What aspects of neuronal activity distinguish the conscious from the unconscious brain? This has been a subject of intense interest and debate since the early days of neurophysiology. However, as any practicing anesthesiologist can attest, it is currently not possible to reliably distinguish a conscious state from an unconscious one on the basis of brain activity. Here we approach this problem from the perspective of dynamical systems theory. We argue that the brain, as a dynamical system, is self-regulated at the boundary between stable and unstable regimes, allowing it in particular to maintain high susceptibility to stimuli. To test this hypothesis, we performed stability analysis of high-density electrocorticography recordings covering an entire cerebral hemisphere in monkeys during reversible loss of consciousness. We show that, during loss of consciousness, the number of eigenmodes at the edge of instability decreases smoothly, independently of the type of anesthetic and specific features of brain activity. The eigenmodes drift back toward the unstable line during recovery of consciousness. Furthermore, we show that stability is an emergent phenomenon dependent on the correlations among activity in different cortical regions rather than signals taken in isolation. These findings support the conclusion that dynamics at the edge of instability are essential for maintaining consciousness and provide a novel and principled measure that distinguishes between the conscious and the unconscious brain. SIGNIFICANCE STATEMENT What distinguishes brain activity during consciousness from that observed during unconsciousness? Answering this question has proven difficult because neither consciousness nor lack thereof have universal signatures in terms of most specific features of brain activity. For instance, different anesthetics induce different patterns of brain activity. We demonstrate that loss of consciousness is universally and reliably associated with stabilization of cortical dynamics regardless of the specific activity characteristics. To give an analogy, our analysis suggests that loss of consciousness is akin to depressing the damper pedal on the piano, which makes the sounds dissipate quicker regardless of the specific melody being played. This approach may prove useful in detecting consciousness on the basis of brain activity under anesthesia and other settings.
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Affiliation(s)
- Guillermo Solovey
- Laboratories of Mathematical Physics and Integrative Neuroscience Laboratory, Buenos Aires, Argentina, Instituto de Cálculo, Faculty of Natural Sciences, University of Buenos Aires (C1428EGA), Buenos Aires, Argentina
| | | | - Toru Yanagawa
- Laboratory for Adaptive Intelligence, Brain Science Institute, RIKEN, Saitama, 351-0198 Japan
| | - Naotaka Fujii
- Laboratory for Adaptive Intelligence, Brain Science Institute, RIKEN, Saitama, 351-0198 Japan
| | | | - Guillermo A Cecchi
- Computational Biology Center, T. J. Watson IBM Research Laboratory, Yorktown Heights, New York 10598, and
| | - Alex Proekt
- Neurobiology and Behavior, Rockefeller University, New York, New York 10065, Department of Anesthesiology, Weill Medical Center, New York, New York 10065
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Fruth F, Jülicher F, Lindner B. An active oscillator model describes the statistics of spontaneous otoacoustic emissions. Biophys J 2015; 107:815-24. [PMID: 25140416 DOI: 10.1016/j.bpj.2014.06.047] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Revised: 06/10/2014] [Accepted: 06/18/2014] [Indexed: 11/26/2022] Open
Abstract
Even in the absence of external stimulation, the cochleas of most humans emit very faint sounds below the threshold of hearing, sounds that are known as spontaneous otoacoustic emissions. They are a signature of the active amplification mechanism in the cochlea. Emissions occur at frequencies that are unique for an individual and change little over time. The statistics of a population of ears exhibit characteristic features such as a preferred relative frequency distance between emissions (interemission intervals). We propose a simplified cochlea model comprising an array of active nonlinear oscillators coupled both hydrodynamically and viscoelastically. The oscillators are subject to a weak spatial disorder that lends individuality to the simulated cochlea. Our model captures basic statistical features of the emissions: distributions of 1), emission frequencies; 2), number of emissions per ear; and 3), interemission intervals. In addition, the model reproduces systematic changes of the interemission intervals with frequency. We show that the mechanism for the preferred interemission interval in our model is the occurrence of synchronized clusters of oscillators.
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Affiliation(s)
- Florian Fruth
- Bernstein Center for Computational Neuroscience, Berlin, Germany; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany.
| | - Frank Jülicher
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
| | - Benjamin Lindner
- Bernstein Center for Computational Neuroscience, Berlin, Germany; Department of Physics, Humboldt University Berlin, Berlin, Germany.
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39
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Control of a hair bundle's mechanosensory function by its mechanical load. Proc Natl Acad Sci U S A 2015; 112:E1000-9. [PMID: 25691749 DOI: 10.1073/pnas.1501453112] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Hair cells, the sensory receptors of the internal ear, subserve different functions in various receptor organs: they detect oscillatory stimuli in the auditory system, but transduce constant and step stimuli in the vestibular and lateral-line systems. We show that a hair cell's function can be controlled experimentally by adjusting its mechanical load. By making bundles from a single organ operate as any of four distinct types of signal detector, we demonstrate that altering only a few key parameters can fundamentally change a sensory cell's role. The motions of a single hair bundle can resemble those of a bundle from the amphibian vestibular system, the reptilian auditory system, or the mammalian auditory system, demonstrating an essential similarity of bundles across species and receptor organs.
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40
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Mhatre N. Active amplification in insect ears: mechanics, models and molecules. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014; 201:19-37. [PMID: 25502323 DOI: 10.1007/s00359-014-0969-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Revised: 11/15/2014] [Accepted: 11/17/2014] [Indexed: 12/29/2022]
Abstract
Active amplification in auditory systems is a unique and sophisticated mechanism that expends energy in amplifying the mechanical input to the auditory system, to increase its sensitivity and acuity. Although known for decades from vertebrates, active auditory amplification was only discovered in insects relatively recently. It was first discovered from two dipterans, mosquitoes and flies, who hear with their light and compliant antennae; only recently has it been observed in the stiffer and heavier tympanal ears of an orthopteran. The discovery of active amplification in two distinct insect lineages with independently evolved ears, suggests that the trait may be ancestral, and other insects may possess it as well. This opens up extensive research possibilities in the field of acoustic communication, not just in auditory biophysics, but also in behaviour and neurobiology. The scope of this review is to establish benchmarks for identifying the presence of active amplification in an auditory system and to review the evidence we currently have from different insect ears. I also review some of the models that have been posited to explain the mechanism, both from vertebrates and insects and then review the current mechanical, neurobiological and genetic evidence for each of these models.
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Affiliation(s)
- Natasha Mhatre
- School of Biological Sciences, University of Bristol, Woodland road, Bristol, BS8 1UG, UK,
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41
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Amro RM, Neiman AB. Effect of bidirectional mechanoelectrical coupling on spontaneous oscillations and sensitivity in a model of hair cells. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:052704. [PMID: 25493813 DOI: 10.1103/physreve.90.052704] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Indexed: 06/04/2023]
Abstract
Sensory hair cells of amphibians exhibit spontaneous activity in their hair bundles and membrane potentials, reflecting two distinct active amplification mechanisms employed in these peripheral mechanosensors. We use a two-compartment model of the bullfrog's saccular hair cell to study how the interaction between its mechanical and electrical compartments affects the emergence of distinct dynamical regimes, and the role of this interaction in shaping the response of the hair cell to weak mechanical stimuli. The model employs a Hodgkin-Huxley-type system for the basolateral electrical compartment and a nonlinear hair bundle oscillator for the mechanical compartment, which are coupled bidirectionally. In the model, forward coupling is provided by the mechanoelectrical transduction current, flowing from the hair bundle to the cell soma. Backward coupling is due to reverse electromechanical transduction, whereby variations of the membrane potential affect adaptation processes in the hair bundle. We isolate oscillation regions in the parameter space of the model and show that bidirectional coupling affects significantly the dynamics of the cell. In particular, self-sustained oscillations of the hair bundles and membrane potential can result from bidirectional coupling, and the coherence of spontaneous oscillations can be maximized by tuning the coupling strength. Consistent with previous experimental work, the model demonstrates that dynamical regimes of the hair bundle change in response to variations in the conductances of basolateral ion channels. We show that sensitivity of the hair cell to weak mechanical stimuli can be maximized by varying coupling strength, and that stochasticity of the hair bundle compartment is a limiting factor of the sensitivity.
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Affiliation(s)
- Rami M Amro
- Department of Physics and Astronomy, Ohio University, Athens, Ohio 45701, USA and Neuroscience Program, Ohio University, Athens, Ohio 45701, USA
| | - Alexander B Neiman
- Department of Physics and Astronomy, Ohio University, Athens, Ohio 45701, USA and Neuroscience Program, Ohio University, Athens, Ohio 45701, USA
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42
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Martin P. All that jazz coming out of my ears. Biophys J 2014; 107:800-2. [PMID: 25140414 DOI: 10.1016/j.bpj.2014.07.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Revised: 07/03/2014] [Accepted: 07/07/2014] [Indexed: 11/28/2022] Open
Affiliation(s)
- Pascal Martin
- Laboratoire Physico-Chimie Curie, Centre National de la Recherche Scientifique, UMR168, Paris, France; Institut Curie, Centre de Recherche, Paris, France; and Université Pierre et Marie Curie, Paris, France.
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43
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Abstract
Uniquely among human senses, hearing is not simply a passive response to stimulation. Our auditory system is instead enhanced by an active process in cochlear hair cells that amplifies acoustic signals several hundred-fold, sharpens frequency selectivity and broadens the ear's dynamic range. Active motility of the mechanoreceptive hair bundles underlies the active process in amphibians and some reptiles; in mammals, this mechanism operates in conjunction with prestin-based somatic motility. Both individual hair bundles and the cochlea as a whole operate near a dynamical instability, the Hopf bifurcation, which accounts for the cardinal features of the active process.
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Reichenbach T, Hudspeth AJ. The physics of hearing: fluid mechanics and the active process of the inner ear. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2014; 77:076601. [PMID: 25006839 DOI: 10.1088/0034-4885/77/7/076601] [Citation(s) in RCA: 72] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Most sounds of interest consist of complex, time-dependent admixtures of tones of diverse frequencies and variable amplitudes. To detect and process these signals, the ear employs a highly nonlinear, adaptive, real-time spectral analyzer: the cochlea. Sound excites vibration of the eardrum and the three miniscule bones of the middle ear, the last of which acts as a piston to initiate oscillatory pressure changes within the liquid-filled chambers of the cochlea. The basilar membrane, an elastic band spiraling along the cochlea between two of these chambers, responds to these pressures by conducting a largely independent traveling wave for each frequency component of the input. Because the basilar membrane is graded in mass and stiffness along its length, however, each traveling wave grows in magnitude and decreases in wavelength until it peaks at a specific, frequency-dependent position: low frequencies propagate to the cochlear apex, whereas high frequencies culminate at the base. The oscillations of the basilar membrane deflect hair bundles, the mechanically sensitive organelles of the ear's sensory receptors, the hair cells. As mechanically sensitive ion channels open and close, each hair cell responds with an electrical signal that is chemically transmitted to an afferent nerve fiber and thence into the brain. In addition to transducing mechanical inputs, hair cells amplify them by two means. Channel gating endows a hair bundle with negative stiffness, an instability that interacts with the motor protein myosin-1c to produce a mechanical amplifier and oscillator. Acting through the piezoelectric membrane protein prestin, electrical responses also cause outer hair cells to elongate and shorten, thus pumping energy into the basilar membrane's movements. The two forms of motility constitute an active process that amplifies mechanical inputs, sharpens frequency discrimination, and confers a compressive nonlinearity on responsiveness. These features arise because the active process operates near a Hopf bifurcation, the generic properties of which explain several key features of hearing. Moreover, when the gain of the active process rises sufficiently in ultraquiet circumstances, the system traverses the bifurcation and even a normal ear actually emits sound. The remarkable properties of hearing thus stem from the propagation of traveling waves on a nonlinear and excitable medium.
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Tchumatchenko T, Reichenbach T. A cochlear-bone wave can yield a hearing sensation as well as otoacoustic emission. Nat Commun 2014; 5:4160. [PMID: 24954736 PMCID: PMC4083418 DOI: 10.1038/ncomms5160] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2013] [Accepted: 05/19/2014] [Indexed: 11/16/2022] Open
Abstract
A hearing sensation arises when the elastic basilar membrane inside the cochlea vibrates. The basilar membrane is typically set into motion through airborne sound that displaces the middle ear and induces a pressure difference across the membrane. A second, alternative pathway exists, however: stimulation of the cochlear bone vibrates the basilar membrane as well. This pathway, referred to as bone conduction, is increasingly used in headphones that bypass the ear canal and the middle ear. Furthermore, otoacoustic emissions, sounds generated inside the cochlea and emitted therefrom, may not involve the usual wave on the basilar membrane, suggesting that additional cochlear structures are involved in their propagation. Here we describe a novel propagation mode within the cochlea that emerges through deformation of the cochlear bone. Through a mathematical and computational approach we demonstrate that this propagation mode can explain bone conduction as well as numerous properties of otoacoustic emissions. Novel headphone technology employs bone conduction to enable hearing, but the mechanism behind this remains unclear. Tchumatchenko and Reichenbach now show that bone conduction and subsequent hearing and otoacoustic emissions are in part due to deformation of the cochlear bone.
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Affiliation(s)
- Tatjana Tchumatchenko
- Theory of Neural Dynamics Group, Max Planck Institute for Brain Research, Max-von-Laue Strasse 4, 60438 Frankfurt am Main, Germany
| | - Tobias Reichenbach
- Department of Bioengineering, Imperial College London, South Kensington Campus, London SW7 2AZ, UK
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46
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Abstract
To understand the strategies used by the brain to analyze complex environments, we must first characterize how the features of sensory stimuli are encoded in the spiking of neuronal populations. Characterizing a population code requires identifying the temporal precision of spiking and the extent to which spiking is correlated, both between cells and over time. In this study, we characterize the population code for speech in the gerbil inferior colliculus (IC), the hub of the auditory system where inputs from parallel brainstem pathways are integrated for transmission to the cortex. We find that IC spike trains can carry information about speech with sub-millisecond precision, and, consequently, that the temporal correlations imposed by refractoriness can play a significant role in shaping spike patterns. We also find that, in contrast to most other brain areas, the noise correlations between IC cells are extremely weak, indicating that spiking in the population is conditionally independent. These results demonstrate that the problem of understanding the population coding of speech can be reduced to the problem of understanding the stimulus-driven spiking of individual cells, suggesting that a comprehensive model of the subcortical processing of speech may be attainable in the near future.
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Geurten B, Spalthoff C, Göpfert M. Insect Hearing: Active Amplification in Tympanal Ears. Curr Biol 2013; 23:R950-2. [DOI: 10.1016/j.cub.2013.09.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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48
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Abstract
To enhance weak sounds while compressing the dynamic intensity range, auditory sensory cells amplify sound-induced vibrations in a nonlinear, intensity-dependent manner. In the course of this process, instantaneous waveform distortion is produced, with two conspicuous kinds of interwoven consequences, the introduction of new sound frequencies absent from the original stimuli, which are audible and detectable in the ear canal as otoacoustic emissions, and the possibility for an interfering sound to suppress the response to a probe tone, thereby enhancing contrast among frequency components. We review how the diverse manifestations of auditory nonlinearity originate in the gating principle of their mechanoelectrical transduction channels; how they depend on the coordinated opening of these ion channels ensured by connecting elements; and their links to the dynamic behavior of auditory sensory cells. This paper also reviews how the complex properties of waves traveling through the cochlea shape the manifestations of auditory nonlinearity. Examination methods based on the detection of distortions open noninvasive windows on the modes of activity of mechanosensitive structures in auditory sensory cells and on the distribution of sites of nonlinearity along the cochlear tonotopic axis, helpful for deciphering cochlear molecular physiology in hearing-impaired animal models. Otoacoustic emissions enable fast tests of peripheral sound processing in patients. The study of auditory distortions also contributes to the understanding of the perception of complex sounds.
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Affiliation(s)
- Paul Avan
- Laboratory of Neurosensory Biophysics, University of Auvergne, School of Medicine, Clermont-Ferrand, France; Institut National de la Santé et de la Recherche Médicale (INSERM), UMR 1107, Clermont-Ferrand, France; Centre Jean Perrin, Clermont-Ferrand, France; Department of Otolaryngology, County Hospital, Krems an der Donau, Austria; Laboratory of Genetics and Physiology of Hearing, Department of Neuroscience, Institut Pasteur, Paris, France; Collège de France, Genetics and Cell Physiology, Paris, France
| | - Béla Büki
- Laboratory of Neurosensory Biophysics, University of Auvergne, School of Medicine, Clermont-Ferrand, France; Institut National de la Santé et de la Recherche Médicale (INSERM), UMR 1107, Clermont-Ferrand, France; Centre Jean Perrin, Clermont-Ferrand, France; Department of Otolaryngology, County Hospital, Krems an der Donau, Austria; Laboratory of Genetics and Physiology of Hearing, Department of Neuroscience, Institut Pasteur, Paris, France; Collège de France, Genetics and Cell Physiology, Paris, France
| | - Christine Petit
- Laboratory of Neurosensory Biophysics, University of Auvergne, School of Medicine, Clermont-Ferrand, France; Institut National de la Santé et de la Recherche Médicale (INSERM), UMR 1107, Clermont-Ferrand, France; Centre Jean Perrin, Clermont-Ferrand, France; Department of Otolaryngology, County Hospital, Krems an der Donau, Austria; Laboratory of Genetics and Physiology of Hearing, Department of Neuroscience, Institut Pasteur, Paris, France; Collège de France, Genetics and Cell Physiology, Paris, France
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Mhatre N, Robert D. A tympanal insect ear exploits a critical oscillator for active amplification and tuning. Curr Biol 2013; 23:1952-7. [PMID: 24076240 PMCID: PMC3793861 DOI: 10.1016/j.cub.2013.08.028] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Revised: 06/23/2013] [Accepted: 08/05/2013] [Indexed: 11/05/2022]
Abstract
A dominant theme of acoustic communication is the partitioning of acoustic space into exclusive, species-specific niches to enable efficient information transfer. In insects, acoustic niche partitioning is achieved through auditory frequency filtering, brought about by the mechanical properties of their ears [1]. The tuning of the antennal ears of mosquitoes [2] and flies [3], however, arises from active amplification, a process similar to that at work in the mammalian cochlea [4]. Yet, the presence of active amplification in the other type of insect ears—tympanal ears—has remained uncertain [5]. Here we demonstrate the presence of active amplification and adaptive tuning in the tympanal ear of a phylogenetically basal insect, a tree cricket. We also show that the tree cricket exploits critical oscillator-like mechanics, enabling high auditory sensitivity and tuning to conspecific songs. These findings imply that sophisticated auditory mechanisms may have appeared even earlier in the evolution of hearing and acoustic communication than currently appreciated. Our findings also raise the possibility that frequency discrimination and directional hearing in tympanal systems may rely on physiological nonlinearities, in addition to mechanical properties, effectively lifting some of the physical constraints placed on insects by their small size [6] and prompting an extensive reexamination of invertebrate audition. The tympanal ears of a tree cricket use active amplification Active amplification and not passive resonance determines tuning to song frequency Active amplification and tuning have an “on” and an “off” state Crickets are the phylogenetically oldest insects with active auditory amplification
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Affiliation(s)
- Natasha Mhatre
- School of Biological Sciences, University of Bristol, Bristol BS8 1UG, UK.
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Sisto R, Sanjust F, Moleti A. Input/output functions of different-latency components of transient-evoked and stimulus-frequency otoacoustic emissions. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2013; 133:2240-53. [PMID: 23556592 DOI: 10.1121/1.4794382] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The input/output functions of the different-latency components of human transient-evoked and stimulus-frequency otoacoustic emissions are analyzed, with the goal of relating them to the underlying nonlinear dynamical properties of the basilar membrane response. Several cochlear models predict a cubic nonlinearity that would yield a correspondent compressive response. The otoacoustic response comes from different generation mechanisms, each characterized by a particular relation between local basilar membrane displacement and otoacoustic level. For the same mechanism (e.g., reflection from cochlear roughness), different generation places would imply differently compressive regimes of the local basilar membrane dynamics. Therefore, this kind of study requires disentangling these contributions, using suitable data acquisition and time-frequency analysis techniques. Fortunately, different generation mechanisms/places also imply different phase-gradient delays, knowledge of which can be used to perform this task. In this study, the different-latency otoacoustic components systematically show differently compressive response, consistent with two simple hypotheses: (1) all emissions come from the reflection mechanism and (2) the basilar membrane response is strongly compressive in the resonance region and closer to linear in more basal regions. It is not clear if such a compressive behavior also extends to arbitrarily low stimulus levels.
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Affiliation(s)
- Renata Sisto
- Department of Occupational Hygiene, INAIL ex ISPESL, Via Fontana Candida, 1, 00040 Monte Porzio Catone (Roma), Italy
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