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For: Mehinto AC, Martyniuk CJ, Spade DJ, Denslow ND. Applications for next-generation sequencing in fish ecotoxicogenomics. Front Genet 2012;3:62. [PMID: 22539934 PMCID: PMC3336092 DOI: 10.3389/fgene.2012.00062] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2012] [Accepted: 03/02/2012] [Indexed: 01/23/2023]  Open
Number Cited by Other Article(s)
1
Li Y, Lu J, Song X, Wang Y, Li Q, Pang Y, Gou M. Conjoint transcriptomics and metabolomics analyses provide insights into the toxicity of acetamiprid to Lethenteron reissneri larvae. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024;283:116828. [PMID: 39094458 DOI: 10.1016/j.ecoenv.2024.116828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2024] [Revised: 07/23/2024] [Accepted: 07/31/2024] [Indexed: 08/04/2024]
2
Fu Y, Zhang J, Cheng W, Cheng X, Lu L, Gui L, Jiang Y, Zhang Y, Xu D. miR-124 mediates the expression of ccBax to regulate Cyprinid herpesvirus 2 (CyHV-2)-induced apoptosis and viral replication. JOURNAL OF FISH DISEASES 2023. [PMID: 37186311 DOI: 10.1111/jfd.13783] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 03/08/2023] [Accepted: 03/09/2023] [Indexed: 05/17/2023]
3
Priscilla L, Malathi E, Moses Inbaraj R. Sex steroid profile during oocyte development and maturation in the intertidal worm Marphysa madrasi (Polychaeta: Eunicidae) from the east coast of India. Gen Comp Endocrinol 2023;331:114118. [PMID: 36037874 DOI: 10.1016/j.ygcen.2022.114118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/09/2022] [Revised: 08/04/2022] [Accepted: 08/18/2022] [Indexed: 02/07/2023]
4
Ruden DM. 10 Years of Toxicogenomics section in Frontiers in Genetics: Past discoveries and Future Perspectives. Front Genet 2022;13:979761. [PMID: 36171875 PMCID: PMC9510767 DOI: 10.3389/fgene.2022.979761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 08/11/2022] [Indexed: 11/13/2022]  Open
5
Gomes AS, Passos LS, Rocha Aride PH, Chisté B, Gomes LC, Boldrini-França J. Gene expression changes in Epinephelus marginatus (Teleostei, Serranidae) liver reveals candidate molecular biomarker of iron ore contamination. CHEMOSPHERE 2022;303:134899. [PMID: 35561782 DOI: 10.1016/j.chemosphere.2022.134899] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Revised: 05/05/2022] [Accepted: 05/06/2022] [Indexed: 06/15/2023]
6
Armstrong EK, Mondon J, Miller AD, Revill AT, Stephenson SA, Tan MH, Greenfield P, Tromp JJ, Corbett P, Hook SE. Transcriptomic and Histological Analysis of the Greentail Prawn (Metapenaeus bennettae) Following Light Crude Oil Exposure. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2022;41:2162-2180. [PMID: 35815472 PMCID: PMC9545365 DOI: 10.1002/etc.5413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/02/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
7
Sumithra TG, Sharma SRK, Gayathri S, Ebeneezar S, Reshma KJ, Anikuttan KK, Narasimapallavan GI, Rameshkumar P, Sakthivel M, Prabu DL, Tamilmani G, Vijayagopal P, Gopalakrishnan A. Comparative evaluation of fish larval preservation methods on microbiome profiles to aid in metagenomics research. Appl Microbiol Biotechnol 2022;106:4719-4735. [PMID: 35739345 DOI: 10.1007/s00253-022-12026-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 06/03/2022] [Accepted: 06/10/2022] [Indexed: 11/26/2022]
8
Li PH, Wang LQ, He JY, Zhu XL, Huang W, Wang SW, Qin QW, Sun HY. MicroRNA-124 Promotes Singapore Grouper Iridovirus Replication and Negatively Regulates Innate Immune Response. Front Immunol 2021;12:767813. [PMID: 34858424 PMCID: PMC8631330 DOI: 10.3389/fimmu.2021.767813] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 10/19/2021] [Indexed: 02/02/2023]  Open
9
Yang C, Lim W, Song G. Immunotoxicological effects of insecticides in exposed fishes. Comp Biochem Physiol C Toxicol Pharmacol 2021;247:109064. [PMID: 33905824 DOI: 10.1016/j.cbpc.2021.109064] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 04/11/2021] [Accepted: 04/18/2021] [Indexed: 02/07/2023]
10
Zamora-Briseño JA, Améndola-Pimenta M, Ortega-Rosas DA, Pereira-Santana A, Hernández-Velázquez IM, González-Penagos CE, Pérez-Vega JA, Del Río-García M, Árcega-Cabrera F, Rodríguez-Canul R. Gill and liver transcriptomic responses of Achirus lineatus (Neopterygii: Achiridae) exposed to water-accommodated fraction (WAF) of light crude oil reveal an onset of hypoxia-like condition. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021;28:34309-34327. [PMID: 33646544 DOI: 10.1007/s11356-021-12909-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 02/08/2021] [Indexed: 06/12/2023]
11
Loeffler CR, Tartaglione L, Friedemann M, Spielmeyer A, Kappenstein O, Bodi D. Ciguatera Mini Review: 21st Century Environmental Challenges and the Interdisciplinary Research Efforts Rising to Meet Them. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021;18:3027. [PMID: 33804281 PMCID: PMC7999458 DOI: 10.3390/ijerph18063027] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 03/12/2021] [Accepted: 03/12/2021] [Indexed: 12/19/2022]
12
Mehinto AC, Thornton Hampton LM, Vidal-Dorsch DE, Garcia-Reyero N, Arick MA, Maruya KA, Lao W, Vulpe CD, Brown-Augustine M, Loguinov A, Bay SM. Transcriptomic response patterns of hornyhead turbot (Pleuronichthys verticalis) dosed with polychlorinated biphenyls and polybrominated diphenyl ethers. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2021;38:100822. [PMID: 33684654 DOI: 10.1016/j.cbd.2021.100822] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 09/04/2020] [Accepted: 01/19/2021] [Indexed: 12/15/2022]
13
Endocrine disruptors in teleosts: Evaluating environmental risks and biomarkers. AQUACULTURE AND FISHERIES 2021. [DOI: 10.1016/j.aaf.2020.07.013] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
14
Transcriptional responses in newly-hatched Japanese medaka (Oryzias latipes) associated with developmental malformations following diluted bitumen exposure. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2020;35:100685. [DOI: 10.1016/j.cbd.2020.100685] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 04/08/2020] [Accepted: 04/10/2020] [Indexed: 11/21/2022]
15
Zhou Z, Han K, Wu Y, Bai H, Ke Q, Pu F, Wang Y, Xu P. Genome-Wide Association Study of Growth and Body-Shape-Related Traits in Large Yellow Croaker (Larimichthys crocea) Using ddRAD Sequencing. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2019;21:655-670. [PMID: 31332575 DOI: 10.1007/s10126-019-09910-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 06/26/2019] [Indexed: 06/10/2023]
16
Jones J, Wellband K, Zielinski B, Heath DD. Transcriptional Basis of Copper-Induced Olfactory Impairment in the Sea Lamprey, a Primitive Invasive Fish. G3 (BETHESDA, MD.) 2019;9:933-941. [PMID: 30670609 PMCID: PMC6404594 DOI: 10.1534/g3.118.200920] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Accepted: 01/19/2019] [Indexed: 11/18/2022]
17
Zylberberg M. Next-Generation Ecological Immunology. Physiol Biochem Zool 2019;92:177-188. [DOI: 10.1086/702440] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
18
Wang M, Jiang S, Wu W, Yu F, Chang W, Li P, Wang K. Non-coding RNAs Function as Immune Regulators in Teleost Fish. Front Immunol 2018;9:2801. [PMID: 30546368 PMCID: PMC6279911 DOI: 10.3389/fimmu.2018.02801] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 11/13/2018] [Indexed: 12/13/2022]  Open
19
Hook SE, Mondon J, Revill AT, Greenfield PA, Stephenson SA, Strzelecki J, Corbett P, Armstrong E, Song J, Doan H, Barrett S. Monitoring sublethal changes in fish physiology following exposure to a light, unweathered crude oil. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2018;204:27-45. [PMID: 30173120 DOI: 10.1016/j.aquatox.2018.08.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 08/14/2018] [Accepted: 08/16/2018] [Indexed: 06/08/2023]
20
Hook SE, Mondon J, Revill AT, Greenfield PA, Smith RA, Turner RDR, Corbett PA, Warne MSJ. Transcriptomic, lipid, and histological profiles suggest changes in health in fish from a pesticide hot spot. MARINE ENVIRONMENTAL RESEARCH 2018;140:299-321. [PMID: 29983192 DOI: 10.1016/j.marenvres.2018.06.020] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 06/14/2018] [Accepted: 06/28/2018] [Indexed: 06/08/2023]
21
Rodrigues PA, Ferrari RG, Conte-Junior CA. Application of molecular tools to elucidate the microbiota of seafood. J Appl Microbiol 2018;124:1347-1365. [PMID: 29345036 DOI: 10.1111/jam.13701] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2017] [Revised: 01/09/2018] [Accepted: 01/11/2018] [Indexed: 12/19/2022]
22
Kim HS, Lee BY, Han J, Jeong CB, Hwang DS, Lee MC, Kang HM, Kim DH, Lee D, Kim J, Choi IY, Lee JS. The genome of the marine medaka Oryzias melastigma. Mol Ecol Resour 2018;18:656-665. [PMID: 29451363 DOI: 10.1111/1755-0998.12769] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 01/29/2018] [Accepted: 02/06/2018] [Indexed: 11/30/2022]
23
García CF, Pedrini N, Sánchez-Paz A, Reyna-Blanco CS, Lavarias S, Muhlia-Almazán A, Fernández-Giménez A, Laino A, de-la-Re-Vega E, Lukaszewicz G, López-Zavala AA, Brieba LG, Criscitello MF, Carrasco-Miranda JS, García-Orozco KD, Ochoa-Leyva A, Rudiño-Piñera E, Sanchez-Flores A, Sotelo-Mundo RR. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response. Mar Genomics 2018;37:74-81. [DOI: 10.1016/j.margen.2017.08.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Revised: 08/25/2017] [Accepted: 08/26/2017] [Indexed: 12/14/2022]
24
Sudhagar A, Kumar G, El-Matbouli M. Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review. Int J Mol Sci 2018;19:ijms19010245. [PMID: 29342931 PMCID: PMC5796193 DOI: 10.3390/ijms19010245] [Citation(s) in RCA: 91] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Revised: 01/08/2018] [Accepted: 01/10/2018] [Indexed: 12/12/2022]  Open
25
Han J, Won EJ, Kang HM, Lee MC, Jeong CB, Kim HS, Hwang DS, Lee JS. Marine copepod cytochrome P450 genes and their applications for molecular ecotoxicological studies in response to oil pollution. MARINE POLLUTION BULLETIN 2017;124:953-961. [PMID: 27686823 DOI: 10.1016/j.marpolbul.2016.09.048] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Revised: 09/20/2016] [Accepted: 09/22/2016] [Indexed: 06/06/2023]
26
Hook SE, Kroon FJ, Greenfield PA, Warne MSJ, Smith RA, Turner RD. Hepatic transcriptomic profiles from barramundi, Lates calcarifer, as a means of assessing organism health and identifying stressors in rivers in northern Queensland. MARINE ENVIRONMENTAL RESEARCH 2017;129:166-179. [PMID: 28601346 DOI: 10.1016/j.marenvres.2017.05.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Revised: 05/12/2017] [Accepted: 05/29/2017] [Indexed: 06/07/2023]
27
Saaristo M, Wong BBM, Mincarelli L, Craig A, Johnstone CP, Allinson M, Lindström K, Craft JA. Characterisation of the transcriptome of male and female wild-type guppy brains with RNA-Seq and consequences of exposure to the pharmaceutical pollutant, 17α-ethinyl estradiol. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2017;186:28-39. [PMID: 28246045 DOI: 10.1016/j.aquatox.2017.02.016] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2016] [Revised: 02/09/2017] [Accepted: 02/14/2017] [Indexed: 06/06/2023]
28
Martyniuk CJ, Doperalski NJ, Prucha MS, Zhang JL, Kroll KJ, Conrow R, Barber DS, Denslow ND. High contaminant loads in Lake Apopka's riparian wetland disrupt gene networks involved in reproduction and immune function in largemouth bass. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2016;19:140-150. [DOI: 10.1016/j.cbd.2016.06.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Revised: 04/05/2016] [Accepted: 06/09/2016] [Indexed: 12/28/2022]
29
Makrinos DL, Bowden TJ. Natural environmental impacts on teleost immune function. FISH & SHELLFISH IMMUNOLOGY 2016;53:50-57. [PMID: 26973022 DOI: 10.1016/j.fsi.2016.03.008] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2016] [Accepted: 03/07/2016] [Indexed: 06/05/2023]
30
Kim BM, Kim J, Choi IY, Raisuddin S, Au DWT, Leung KMY, Wu RSS, Rhee JS, Lee JS. Omics of the marine medaka (Oryzias melastigma) and its relevance to marine environmental research. MARINE ENVIRONMENTAL RESEARCH 2016;113:141-152. [PMID: 26716363 DOI: 10.1016/j.marenvres.2015.12.004] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Revised: 12/11/2015] [Accepted: 12/12/2015] [Indexed: 06/05/2023]
31
Bahamonde PA, Feswick A, Isaacs MA, Munkittrick KR, Martyniuk CJ. Defining the role of omics in assessing ecosystem health: Perspectives from the Canadian environmental monitoring program. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2016;35:20-35. [PMID: 26771350 DOI: 10.1002/etc.3218] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2015] [Revised: 05/16/2015] [Accepted: 08/20/2015] [Indexed: 05/22/2023]
32
Laporte M, Pavey SA, Rougeux C, Pierron F, Lauzent M, Budzinski H, Labadie P, Geneste E, Couture P, Baudrimont M, Bernatchez L. RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels. Mol Ecol 2015;25:219-37. [DOI: 10.1111/mec.13466] [Citation(s) in RCA: 115] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Revised: 11/06/2015] [Accepted: 11/06/2015] [Indexed: 12/14/2022]
33
AlMomin S, Kumar V, Al-Amad S, Al-Hussaini M, Dashti T, Al-Enezi K, Akbar A. Draft genome sequence of the silver pomfret fish, Pampus argenteus. Genome 2015;59:51-8. [PMID: 26692342 DOI: 10.1139/gen-2015-0056] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
34
Guo C, Cui H, Ni S, Yan Y, Qin Q. Comprehensive identification and profiling of host miRNAs in response to Singapore grouper iridovirus (SGIV) infection in grouper (Epinephelus coioides). DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2015;52:226-235. [PMID: 26027797 DOI: 10.1016/j.dci.2015.05.014] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 05/25/2015] [Accepted: 05/26/2015] [Indexed: 06/04/2023]
35
Simmons DBD, Benskin JP, Cosgrove JR, Duncker BP, Ekman DR, Martyniuk CJ, Sherry JP. Omics for aquatic ecotoxicology: control of extraneous variability to enhance the analysis of environmental effects. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2015;34:1693-1704. [PMID: 25827364 DOI: 10.1002/etc.3002] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2014] [Revised: 01/09/2015] [Accepted: 03/30/2015] [Indexed: 06/04/2023]
36
Hook SE, Twine NA, Simpson SL, Spadaro DA, Moncuquet P, Wilkins MR. 454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: transcriptome assembly and toxicant induced changes. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2014;153:73-88. [PMID: 24434169 DOI: 10.1016/j.aquatox.2013.11.022] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2013] [Revised: 11/26/2013] [Accepted: 11/28/2013] [Indexed: 05/20/2023]
37
Hook SE, Osborn HL, Gissi F, Moncuquet P, Twine NA, Wilkins MR, Adams MS. RNA-Seq analysis of the toxicant-induced transcriptome of the marine diatom, Ceratoneis closterium. Mar Genomics 2014;16:45-53. [DOI: 10.1016/j.margen.2013.12.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2013] [Revised: 11/29/2013] [Accepted: 12/18/2013] [Indexed: 01/17/2023]
38
Williams TD, Mirbahai L, Chipman JK. The toxicological application of transcriptomics and epigenomics in zebrafish and other teleosts. Brief Funct Genomics 2014;13:157-71. [DOI: 10.1093/bfgp/elt053] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
39
Hook SE, Osborn HL, Spadaro DA, Simpson SL. Assessing mechanisms of toxicant response in the amphipod Melita plumulosa through transcriptomic profiling. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2014;146:247-57. [PMID: 24334007 DOI: 10.1016/j.aquatox.2013.11.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2013] [Revised: 11/01/2013] [Accepted: 11/04/2013] [Indexed: 05/06/2023]
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Martyniuk CJ, Houlahan J. Assessing gene network stability and individual variability in the fathead minnow (Pimephales promelas) transcriptome. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2013;8:283-91. [PMID: 24036207 DOI: 10.1016/j.cbd.2013.08.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2013] [Revised: 08/14/2013] [Accepted: 08/15/2013] [Indexed: 12/22/2022]
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Ou J, Li Y, Ding Z, Xiu Y, Wu T, Du J, Li W, Zhu H, Ren Q, Gu W, Wang W. Transcriptome-wide identification and characterization of the Procambarus clarkii microRNAs potentially related to immunity against Spiroplasma eriocheiris infection. FISH & SHELLFISH IMMUNOLOGY 2013;35:607-617. [PMID: 23747834 DOI: 10.1016/j.fsi.2013.05.013] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2013] [Revised: 03/13/2013] [Accepted: 05/19/2013] [Indexed: 06/02/2023]
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Houde M, Douville M, Despatie SP, De Silva AO, Spencer C. Induction of gene responses in St. Lawrence River northern pike (Esox lucius) environmentally exposed to perfluorinated compounds. CHEMOSPHERE 2013;92:1195-200. [PMID: 23453599 DOI: 10.1016/j.chemosphere.2013.01.099] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2012] [Accepted: 01/31/2013] [Indexed: 05/06/2023]
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Langlois VS, Martyniuk CJ. Genome wide analysis of Silurana (Xenopus) tropicalis development reveals dynamic expression using network enrichment analysis. Mech Dev 2013;130:304-22. [PMID: 23295496 DOI: 10.1016/j.mod.2012.12.002] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2012] [Revised: 11/30/2012] [Accepted: 12/17/2012] [Indexed: 11/28/2022]
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Forbes VE, Calow P. Promises and problems for the new paradigm for risk assessment and an alternative approach involving predictive systems models. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2012;31:2663-2671. [PMID: 23165997 DOI: 10.1002/etc.2009] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
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Stürzenbaum S, Aschner M, Freedman JH. Toxicogenomics in non-mammalian species-Editorial. Front Genet 2012;3:216. [PMID: 23087709 PMCID: PMC3472458 DOI: 10.3389/fgene.2012.00216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Accepted: 09/28/2012] [Indexed: 11/30/2022]  Open
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Jayapal M. Integration of next-generation sequencing based multi-omics approaches in toxicogenomics. Front Genet 2012;3:88. [PMID: 22661985 PMCID: PMC3356856 DOI: 10.3389/fgene.2012.00088] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2012] [Accepted: 05/02/2012] [Indexed: 12/12/2022]  Open
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