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Kouas S, Djedidi S, Ben Slimene Debez I, Sbissi I, Alyami NM, Hirsch AM. Halotolerant phosphate solubilizing bacteria isolated from arid area in Tunisia improve P status and photosynthetic activity of cultivated barley under P shortage. Heliyon 2024; 10:e38653. [PMID: 39397981 PMCID: PMC11470655 DOI: 10.1016/j.heliyon.2024.e38653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 09/20/2024] [Accepted: 09/26/2024] [Indexed: 10/15/2024] Open
Abstract
Forty-seven (47) bacterial strains were isolated from soil of Gabes (an arid region in southern Tunisia) and were screened for their ability to produce Indole-3-Acetic Acid (IAA) and to solubilize phosphate (P). The characterization and molecular identification of the most successful P-solubilizing bacteria (PSB) were then carried out. When grown on suitable artificial media, the most salt-tolerant strains also showed the highest P solubilization capacity (up to 126.8 μg ml-1 of released phosphorus after 7 day incubation) and the strongest ability to produce IAA (up to 101.86 μg ml-1 after 3 day incubation). Overall, bacterial isolates displayed a different tolerance to varying pH, temperatures, and salinity. The molecular identification revealed that 11 strains belonged to three genera: Bacillus, Pseudomonas and Mesorhizobium. Inoculation of barley with P-solubilizing bacteria under tricalcium phosphate-induced P shortage significantly improved plant growth (biomass, shoot height, and root length) together with increasing total chlorophyll contents and photosynthetic activity. This was concomitant with (i) higher P uptake and translocation and (ii) increased phosphorus absorption and utilization efficiencies (PAE and PUE), which is indicative of a better plant P nutrition under P scarcity. Taken together, we provide strong arguments showing that bacteria native to extreme environments display PSB potential making them promising candidates to mitigate low Pi availability for crop plants.
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Affiliation(s)
- Saber Kouas
- Laboratory of Plant Physiology and Functional Genomics, Institute of Biotechnology, University of Sfax, BP “1175”, 3038, Sfax, Tunisia
- Faculty of Sciences of Gabes, University of Gabes, Zrig, 6072, Gabes, Tunisia
| | - Salem Djedidi
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Saiwai-cho, Fuchushi, Tokyo, 183–8509, Japan
| | - Imen Ben Slimene Debez
- Laboratory of Bioactive Substances, Center of Biotechnology of Borj Cedria (CBBC), BP 901, Hammam-Lif, 2050, Tunisia
| | - Imed Sbissi
- Pastoral Ecosystems and Valorization of Spontaneous Plants and Associated Microorganisms Laboratory, Arid Regions Institute, University of Gabes, 4100, Medenine, Tunisia
| | - Nouf M. Alyami
- Department of Zoology, College of Science, King Saud University, PO Box-2455, Riyadh, 11451, Saudi Arabia
| | - Ann M. Hirsch
- Department of Molecular, Cell, and Developmental Biology and Molecular Biology Institute, University of California, Los Angeles, CA, USA, 90095, USA
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Yu C, Guan Y, Wang Q, Li Y, Wang L, Yu W, Wu J. Effects of calcium phosphate and phosphorus-dissolving bacteria on microbial structure and function during Torreya Grandis branch waste composting. BMC Microbiol 2024; 24:385. [PMID: 39358715 PMCID: PMC11445941 DOI: 10.1186/s12866-024-03535-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 09/20/2024] [Indexed: 10/04/2024] Open
Abstract
BACKGROUND BURKHOLDERIA: is a phosphorus solubilizing microorganism discovered in recent years, which can dissolve insoluble phosphorus compounds into soluble phosphorus. To investigate the effects of Burkholderia and calcium phosphate on the composting of Torreya grandis branches and leaves, as well as to explain the nutritional and metabolic markers related to the composting process. METHODS In this study, we employed amplicon sequencing and untargeted metabolomics analysis to examine the interplay among phosphorus (P) components, microbial communities, and metabolites during T. grandis branch and leaf waste composting that underwent treatment with calcium phosphate and phosphate-solubilizing bacteria (Burkholderia). There were four composting treatments, 10% calcium phosphate (CaP) or 5 ml/kg (1 × 108/ml Burkholderia) microbial inoculum (WJP) or both (CaP + WJP), and the control group (CK). RESULTS The results indicated that Burkholderia inoculation and calcium phosphate treatment affected the phosphorus composition, pH, EC, and nitrogen content. Furthermore, these treatments significantly affected the diversity and structure of bacterial and fungal communities, altering microbial and metabolite interactions. The differential metabolites associated with lipids and organic acids and derivatives treated with calcium phosphate treatment are twice as high as those treated with Burkholderia in both 21d and 42d. The results suggest that calcium phosphate treatment alters the formation of some biological macromolecules. CONCLUSION Both Burkholderia inoculation and calcium phosphate treatment affected the phosphorus composition, nitrogen content and metabolites of T. grandis branch and leaf waste compost.These results extend our comprehension of the coupling of matter transformation and community succession in composting with the addition of calcium phosphate and phosphate-solubilizing bacteria.
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Affiliation(s)
- Chenliang Yu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Yuanyuan Guan
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Qi Wang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Yi Li
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Lei Wang
- Department of Landscape Architecture, Jiyang College, Zhejiang A&F University, Hangzhou, People's Republic of China
| | - Weiwu Yu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China.
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China.
- NFGA Engineering Research Center for Torreya grandis 'Merrillii', Zhejiang A&F University, Hangzhou, China.
| | - Jiasheng Wu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China.
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China.
- NFGA Engineering Research Center for Torreya grandis 'Merrillii', Zhejiang A&F University, Hangzhou, China.
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DeBruyn JM, Keenan SW, Taylor LS. From carrion to soil: microbial recycling of animal carcasses. Trends Microbiol 2024:S0966-842X(24)00229-4. [PMID: 39358066 DOI: 10.1016/j.tim.2024.09.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 08/30/2024] [Accepted: 09/06/2024] [Indexed: 10/04/2024]
Abstract
Decomposer microbial communities are gatekeepers in the redistribution of carbon and nutrients from dead animals (carrion) to terrestrial ecosystems. The flush of decomposition products from a carcass creates a hot spot of microbial activity in the soil below, and the animal's microbiome is released into the environment, mixing with soil communities. Changes in soil physicochemistry, especially reduced oxygen, temporarily constrain microbial nutrient cycling, and influence the timing of these processes and the fate of carrion resources. Carcass-related factors, such as mass, tissue composition, or even microbiome composition may also influence the functional assembly and succession of decomposer communities. Understanding these local scale microbially mediated processes is important for predicting consequences of carrion decomposition beyond the hot spot and hot moment.
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Affiliation(s)
- Jennifer M DeBruyn
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, TN, USA.
| | - Sarah W Keenan
- Department of Geology and Geological Engineering, South Dakota School of Mines and Technology, Rapid City, SD, USA
| | - Lois S Taylor
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, TN, USA
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Sharma P, Pandey R, Chauhan NS. Unveiling wheat growth promotion potential of phosphate solubilizing Pantoea agglomerans PS1 and PS2 through genomic, physiological, and metagenomic characterizations. Front Microbiol 2024; 15:1467082. [PMID: 39318437 PMCID: PMC11420927 DOI: 10.3389/fmicb.2024.1467082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 08/19/2024] [Indexed: 09/26/2024] Open
Abstract
Introduction Phosphorus is an abundant element in the earth's crust and is generally found as complex insoluble conjugates. Plants cannot assimilate insoluble phosphorus and require external supplementation as chemical fertilizers to achieve a good yield. Continuous use of fertilizers has impacted soil ecology, and a sustainable solution is needed to meet plant elemental requirements. Phosphate solubilizing microbes could enhance phosphorus bioavailability for better crop production and can be employed to attain sustainable agriculture practices. Methods The current study unveils the biofertilizer potential of wheat rhizospheric bacteria through physiological, taxonomic, genomic, and microbiomics experimentations. Results and Discussion Culture-dependent exploration identified phosphate-solubilizing PS1 and PS2 strains from the wheat rhizosphere. These isolates were rod-shaped, gram-negative, facultative anaerobic bacteria, having optimum growth at 37°C and pH 7. Phylogenetic and phylogenomic characterization revealed their taxonomic affiliation as Pantoea agglomerans subspecies PS1 & PS2. Both isolates exhibited good tolerance against saline (>10% NaCl (w/v), >11.0% KCl (w/v), and >6.0% LiCl (w/v)), oxidizing (>5.9% H2O2 (v/v)) conditions. PS1 and PS2 genomes harbor gene clusters for biofertilization features, root colonization, and stress tolerance. PS1 and PS2 showed nitrate reduction, phosphate solubilization, auxin production, and carbohydrate utilization properties. Treatment of seeds with PS1 and PS2 significantly enhanced seed germination percentage (p = 0.028 and p = 0.008, respectively), number of tillers (p = 0.0018), number of leaves (p = 0.0001), number of spikes (p = 0.0001) and grain production (p = 0.0001). Wheat rhizosphere microbiota characterizations indicated stable colonization of PS1 and PS2 strains in treated seeds at different feek stages. Pretreatment of seeds with both strains engineered the wheat rhizosphere microbiota by recruiting plant growth-promoting microbial groups. In vitro, In vivo, and microbiota characterization studies indicated the biofertilizer potential of Pantoea sp. PS1 & PS2 to enhance wheat crop production. The employment of these strains could fulfill plant nutrient requirements and be a substitute for chemical fertilizers for sustainable agriculture.
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Affiliation(s)
- Pinki Sharma
- Department of Biochemistry, Maharshi Dayanand University, Rohtak, India
| | - Rajesh Pandey
- INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Nar Singh Chauhan
- Department of Biochemistry, Maharshi Dayanand University, Rohtak, India
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Huang H, Lyu X, Xiao F, Fu J, Xu H, Wu J, Sun Y. Three-year field study on the temporal response of soil microbial communities and functions to PFOA exposure. JOURNAL OF HAZARDOUS MATERIALS 2024; 476:135008. [PMID: 38943893 DOI: 10.1016/j.jhazmat.2024.135008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 06/13/2024] [Accepted: 06/21/2024] [Indexed: 07/01/2024]
Abstract
Contamination of per- and polyfluoroalkyl substances (PFAS) poses a significant threat to soil ecosystem health, yet there remains a lack of understanding regarding the responses of soil microbial communities to prolonged PFAS exposure in field conditions. This study involved a three-year field investigation to track changes in microbial communities and functions in soil subjected to the contamination of a primary PFAS, perfluorooctanoic acid (PFOA). Results showed that PFOA exposure altered soil bacterial and fungal communities in terms of diversity, composition, and structure. Notably, certain bacterial communities with a delayed reaction to PFOA contamination showed the most significant response after one year of exposure. Fungal communities were sensitive to PFOA in soil, exhibiting significant responses within just four months of exposure. After two years, the impact of PFOA on both bacterial and fungal communities was lessened, likely due to the long-term adaptation of microbial communities to PFOA. Moreover, PFOA exposure notably inhibited alkaline phosphatase activity and reduced certain phosphorus cycling-related functional genes after three years of exposure, suggesting potential disruptions in soil fertility. These new insights advance our understanding of the long-term effects of PFOA on soil microbial communities and functions at a field scale.
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Affiliation(s)
- Hai Huang
- School of Earth Sciences and Engineering, Hydrosciences Department, Nanjing University, Nanjing 210023, China
| | - Xueyan Lyu
- School of Hydrology and Water Resources, Nanjing University of Information Science and Technology, Nanjing 210044, China.
| | - Feng Xiao
- Department of Civil and Environmental Engineering, University of Missouri, Columbia, MO 65211, USA
| | - Jiaju Fu
- School of Earth Sciences and Engineering, Hydrosciences Department, Nanjing University, Nanjing 210023, China
| | - Hongxia Xu
- School of Earth Sciences and Engineering, Hydrosciences Department, Nanjing University, Nanjing 210023, China
| | - Jichun Wu
- School of Earth Sciences and Engineering, Hydrosciences Department, Nanjing University, Nanjing 210023, China; Technology Innovation Center for Ecological Monitoring & Restoration Project on Land (Arable), Nanjing 210018, China
| | - Yuanyuan Sun
- School of Earth Sciences and Engineering, Hydrosciences Department, Nanjing University, Nanjing 210023, China; Technology Innovation Center for Ecological Monitoring & Restoration Project on Land (Arable), Nanjing 210018, China.
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Fotoohiyan Z, Samiei F, Sardoei AS, Kashi F, Ghorbanpour M, Kariman K. Improved salinity tolerance in cucumber seedlings inoculated with halotolerant bacterial isolates with plant growth-promoting properties. BMC PLANT BIOLOGY 2024; 24:821. [PMID: 39218905 PMCID: PMC11367809 DOI: 10.1186/s12870-024-05538-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Accepted: 08/22/2024] [Indexed: 09/04/2024]
Abstract
To address salinity stress in plants in an eco-friendly manner, this study investigated the potential effects of salinity-resistant bacteria isolated from saline agricultural soils on the growth of cucumber (Cucumis sativus, cv. Royal) seedlings. A greenhouse factorial experiment was conducted based on a completely randomized design (CRD) with two factors, salinity at four levels and five bacterial treatments, with three replications (n = 3). Initially, fifty bacterial isolates were screened for their salinity and drought tolerance, phosphate solubilization activity, along with production of auxin, siderophore and hydrogen cyanide. Isolates K4, K14, K15, and C8 exhibited the highest resistance to salinity and drought stresses in vitro. Isolates C8 and K15 demonstrated the highest auxin production capacity, generating 2.95 and 2.87 µg mL- 1, respectively, and also exhibited significant siderophore production capacities (by 14% and 11%). Additionally, isolates C8 and K14 displayed greater phosphate solubilization activities, by 184.64 and 122.11 µg mL- 1, respectively. The statistical analysis revealed that the selected four potent isolates significantly enhanced all growth parameters of cucumber plants grown under salinity stress conditions for six weeks. Plant height increased by 41%, fresh and dry weights by 35% and 7%, respectively, and the leaf area index by 85%. The most effective isolate, C8, was identified as Bacillus subtilis based on the 16 S rDNA amplicon sequencing. This study demonstrated that inoculating cucumber seedlings with halotolerant bacterial isolates, such as C8 (Bacillus subtilis), possessing substantial plant growth-promoting properties significantly alleviated salinity stress by enhancing plant growth parameters. These findings suggest a promising eco-friendly strategy for improving crop productivity in saline agricultural environments.
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Affiliation(s)
- Zeinab Fotoohiyan
- Department of Plant Pathology, Jiroft Branch, Islamic Azad University, Kerman, Iran
| | - Fatemeh Samiei
- Department of Plant Pathology, Roudehen Branch, Islamic Azad University, Tehran, Iran
| | - Ali Salehi Sardoei
- Department of Horticultural and Crops Research, Southern Kerman Agricultural and Natural Resources Research and Education Center, AREEO, Jiroft, Iran.
| | - Fatemeh Kashi
- Graduated with a master's degree in statistics from Allameh Tabataba'i University, Tehran, Iran
| | - Mansour Ghorbanpour
- Department of Medicinal Plants, Faculty of Agriculture and Natural Resources, Arak University, Arak, 38156-8-8349, Iran.
| | - Khalil Kariman
- UWA School of Agriculture and Environment, The University of Western Australia, 6009, Perth, WA, Australia
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Liu J, Xu W, Zhang Q, Liao W, Li L, Chen S, Yang J, Wang Z, Xu F. OsPHR2-mediated recruitment of Pseudomonadaceae enhances rice phosphorus uptake. PLANT COMMUNICATIONS 2024; 5:100930. [PMID: 38685708 PMCID: PMC11369732 DOI: 10.1016/j.xplc.2024.100930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 04/02/2024] [Accepted: 04/25/2024] [Indexed: 05/02/2024]
Abstract
Plants can shape their root microbiome to promote growth and nutrient uptake. PHOSPHATE STARVATION RESPONSE 2 (OsPHR2) is a central regulator of phosphate signaling in rice, but whether OsPHR2 can shape the root microbiome to promote phosphorus uptake is unclear. Here, we investigate the role of OsPHR2 in recruiting microbiota for phosphorus uptake using high-throughput sequencing and metabolite analysis. OsPHR2-overexpressing (OsPHR2 OE) rice showed 69.8% greater shoot P uptake in natural soil compared with sterilized soil under high-phosphorus (HP) conditions, but there was only a 54.8% increase in the wild-type (WT). The abundance of the family Pseudomonadaceae was significantly enriched in OsPHR2 OE roots relative to those of WT rice. Compared with the WT, OsPHR2 OE rice had a relatively higher abundance of succinic acid and methylmalonic acid, which could stimulate the growth of Pseudomonas sp. (P6). After inoculation with P6, phosphorus uptake in WT and OsPHR2 OE rice was higher than that in uninoculated rice under low-phosphorus (LP) conditions. Taken together, our results suggest that OsPHR2 can increase phosphorus use in rice through root exudate-mediated recruitment of Pseudomonas. This finding reveals a cooperative contribution of the OsPHR2-modulated root microbiome, which is important for improving phosphorus use in agriculture.
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Affiliation(s)
- Jianping Liu
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Weifeng Xu
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Qian Zhang
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Wencheng Liao
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Liang Li
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shu Chen
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Jinyong Yang
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Zhengrui Wang
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Feiyun Xu
- Center for Plant Water-use and Nutrition Regulation and College of JunCao Science and Ecology, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
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Alzate Zuluaga MY, Fattorini R, Cesco S, Pii Y. Plant-microbe interactions in the rhizosphere for smarter and more sustainable crop fertilization: the case of PGPR-based biofertilizers. Front Microbiol 2024; 15:1440978. [PMID: 39176279 PMCID: PMC11338843 DOI: 10.3389/fmicb.2024.1440978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 07/29/2024] [Indexed: 08/24/2024] Open
Abstract
Biofertilizers based on plant growth promoting rhizobacteria (PGPR) are nowadays gaining increasingly attention as a modern tool for a more sustainable agriculture due to their ability in ameliorating root nutrient acquisition. For many years, most research was focused on the screening and characterization of PGPR functioning as nitrogen (N) or phosphorus (P) biofertilizers. However, with the increasing demand for food using far fewer chemical inputs, new investigations have been carried out to explore the potential use of such bacteria also as potassium (K), sulfur (S), zinc (Zn), or iron (Fe) biofertilizers. In this review, we update the use of PGPR as biofertilizers for a smarter and more sustainable crop production and deliberate the prospects of using microbiome engineering-based methods as potential tools to shed new light on the improvement of plant mineral nutrition. The current era of omics revolution has enabled the design of synthetic microbial communities (named SynComs), which are emerging as a promising tool that can allow the formulation of biofertilizers based on PGPR strains displaying multifarious and synergistic traits, thus leading to an increasingly efficient root acquisition of more than a single essential nutrient at the same time. Additionally, host-mediated microbiome engineering (HMME) leverages advanced omics techniques to reintroduce alleles coding for beneficial compounds, reinforcing positive plant-microbiome interactions and creating plants capable of producing their own biofertilizers. We also discusses the current use of PGPR-based biofertilizers and point out possible avenues of research for the future development of more efficient biofertilizers for a smarter and more precise crop fertilization. Furthermore, concerns have been raised about the effectiveness of PGPR-based biofertilizers in real field conditions, as their success in controlled experiments often contrasts with inconsistent field results. This discrepancy highlights the need for standardized protocols to ensure consistent application and reliable outcomes.
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Kaur H, Mir RA, Hussain SJ, Prasad B, Kumar P, Aloo BN, Sharma CM, Dubey RC. Prospects of phosphate solubilizing microorganisms in sustainable agriculture. World J Microbiol Biotechnol 2024; 40:291. [PMID: 39105959 DOI: 10.1007/s11274-024-04086-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Accepted: 07/16/2024] [Indexed: 08/07/2024]
Abstract
Phosphorus (P), an essential macronutrient for various plant processes, is generally a limiting soil component for crop growth and yields. Organic and inorganic types of P are copious in soils, but their phyto-availability is limited as it is present largely in insoluble forms. Although phosphate fertilizers are applied in P-deficit soils, their undue use negatively impacts soil quality and the environment. Moreover, many P fertilizers are lost because of adsorption and fixation mechanisms, further reducing fertilizer efficiencies. The application of phosphate-solubilizing microorganisms (PSMs) is an environmentally friendly, low-budget, and biologically efficient method for sustainable agriculture without causing environmental hazards. These beneficial microorganisms are widely distributed in the rhizosphere and can hydrolyze inorganic and organic insoluble P substances to soluble P forms which are directly assimilated by plants. The present review summarizes and discusses our existing understanding related to various forms and sources of P in soils, the importance and P utilization by plants and microbes,, the diversification of PSMs along with mixed consortia of diverse PSMs including endophytic PSMs, the mechanism of P solubilization, and lastly constraints being faced in terms of production and adoption of PSMs on large scale have also been discussed.
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Affiliation(s)
- Harmanjit Kaur
- Department of Botany, University of Allahabad, Prayagraj, Uttar Pradesh, 211002, India
| | - Rakeeb Ahmad Mir
- Department of Biotechnology, School of Life Sciences, Central University of Kashmir, Ganderbal, Jammu, Kashmir, 191201, India
| | - Sofi Javed Hussain
- Department of Botany, Central University of Kashmir, Ganderbal, Jammu, Kashmir, 191201, India
| | - Bhairav Prasad
- Department of Biotechnology, Chandigarh Group of Colleges, SAS Nagar, Landran, Punjab, 140307, India
| | - Pankaj Kumar
- Department of Botany and Microbiology, School of Life Sciences, H.N.B. Garhwal University (A Central University), Srinagar Garhwal, Uttarakhand, 246174, India.
| | - Becky N Aloo
- Department of Biological Sciences, University of Eldoret, P. O. Box 1125-30100, Eldoret, Kenya
| | - Chandra Mohan Sharma
- Department of Botany and Microbiology, School of Life Sciences, H.N.B. Garhwal University (A Central University), Srinagar Garhwal, Uttarakhand, 246174, India
| | - Ramesh Chandra Dubey
- Department of Botany and Microbiology, Gurukul Kangri Vishwavidyalaya, Haridwar, Uttarakhand, 249404, India
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Ramos Cabrera EV, Delgado Espinosa ZY, Solis Pino AF. Use of Phosphorus-Solubilizing Microorganisms as a Biotechnological Alternative: A Review. Microorganisms 2024; 12:1591. [PMID: 39203433 PMCID: PMC11356295 DOI: 10.3390/microorganisms12081591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2024] [Revised: 07/24/2024] [Accepted: 08/01/2024] [Indexed: 09/03/2024] Open
Abstract
Microorganisms with the ability to dissolve phosphorus have the potential to release this essential nutrient into the soil through natural solubilization processes, which allows for boosting plant growth and development. While literature reviews acknowledge their potential, unexplored territories concerning accessibility, application, and effective integration into sustainable agriculture necessitate further research. This manuscript employed distinct methodologies to execute a bibliometric analysis and a literature review. The combined application of both methodologies enables a holistic understanding of the domain landscape and its innovative facets. For the bibliometric analysis, the propositions of Donthu and Jia were utilized, supplemented by tools, such as Bibliometrix. The literature review adhered to a systematic methodology predicated on Petersen's guidelines to represent the domain accurately, pinpointing trends and gaps that could steer future, more detailed research. This investigation uncovers an escalating interest in studying these microorganisms since the 2000s, emphasizing their significance in sustainable agriculture and the context of phosphorus scarcity. It was also discerned that India and China, nations with notable agricultural sectors and a high demand for phosphorus fertilizers, spearheaded research output on this subject. This signifies their substantial contribution to the progression of this scientific field. Furthermore, according to the research consulted, phosphorus-solubilizing microorganisms play a pivotal role in the symbiotic interaction of soil with plant roots and represent an efficacious strategy to counteract the low availability of phosphorus in the soil and sustainably enhance agricultural systems. Finally, this review contributes to the relevant domain by examining existing empirical evidence with special emphasis on sustainable agriculture, improved understanding of phosphorus solubilization mechanisms, and recognition of various microbial entities.
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Affiliation(s)
- Efrén Venancio Ramos Cabrera
- Escuela de Ciencias Agrícolas, Pecuarias y del Medio Ambiente—ECAPMA, Universidad Nacional Abierta y a Distancia—UNAD, Calle 5 # 46N-67, Popayán 190001, Cauca, Colombia;
| | - Zuly Yuliana Delgado Espinosa
- Facultad de Ingeniería, Corporación Universitaria Comfacauca—Unicomfacauca, Cl. 4 N. 8-30, Popayán 190001, Cauca, Colombia;
| | - Andrés Felipe Solis Pino
- Facultad de Ingeniería, Corporación Universitaria Comfacauca—Unicomfacauca, Cl. 4 N. 8-30, Popayán 190001, Cauca, Colombia;
- Facultad de Ingeniería Electrónica y Telecomunicaciones, Universidad del Cauca, Popayán 190003, Cauca, Colombia
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Anzuay MS, Chiatti MH, Intelangelo AB, Ludueña LM, Viso NP, Angelini JG, Taurian T. Employment of pqqE gene as molecular marker for the traceability of Gram negative phosphate solubilizing bacteria associated to plants. Curr Genet 2024; 70:12. [PMID: 39093429 DOI: 10.1007/s00294-024-01296-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 07/02/2024] [Accepted: 07/22/2024] [Indexed: 08/04/2024]
Abstract
Insoluble phosphorous compounds solubilization by soil bacteria is of great relevance since it puts available the phosphorus to be used by plants. The production of organic acids is the main microbiological mechanism by which insoluble inorganic phosphorus compounds are solubilized. In Gram negative bacteria, gluconic acid is synthesized by the activity of the holoenzyme glucose dehydrogenase-pyrroloquinoline quinine named GDH-PQQ. The use of marker genes is a very useful tool to evaluate the persistence of the introduced bacteria and allow to follow-up the effect of biotic and abiotic factors on these beneficial microorganisms in the soil. In previous studies we detected the presence of the pqqE gene in a great percentage of both non-culturable and culturable native soil bacteria. The objective of this study was to analyze the phylogeny of the sequence of pqqE gene and its potential for the study of phosphate solubilizing bacteria from pure and mixed bacterial cultures and rhizospheric soil samples. For this, the presence of the pqqE gene in the genome of phosphate solubilizing bacteria that belong to several bacteria was determined by PCR. Also, this gene was analyzed from mixed bacterial cultures and rhizospheric soil associated to peanut plants inoculated or not with phosphate solubilizing bacteria. For this, degenerate primers designed from several bacterial genera and specific primers for the genus Pseudomonas spp., designed in this study, were used. DNA template used from simple or mixed bacterial cultures and from rhizospheric soil samples was obtained using two different DNA extraction techniques. Results indicated that pqqE gene amplification product was found in the genome of all Gram negative phosphate solubilizing bacteria analyzed. It was possible to detect this gene in the DNA obtained from mixed cultures where these bacteria grew in interaction with other microorganisms and in that obtained from rhizospheric soil samples inoculated or not with these bacteria. The phylogenetic analysis indicated that pqqE gene is a conserved gene within related genera. In conclusion, pqqE gene could be a potential marker for the study of phosphate solubilizing bacterial populations.
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Affiliation(s)
- María Soledad Anzuay
- Instituto de Investigaciones Agrobiotecnológicas (CONICET-UNRC), Río Cuarto, Argentina
| | - Mario Hernán Chiatti
- Instituto de Investigaciones Agrobiotecnológicas (CONICET-UNRC), Río Cuarto, Argentina
| | | | | | - Natalia Pin Viso
- Instituto de Microbiología y Zoología Agrícola, IMyZA, IABiMo, INTA, Hurlingham, Buenos Aires, Argentina
| | | | - Tania Taurian
- Instituto de Investigaciones Agrobiotecnológicas (CONICET-UNRC), Río Cuarto, Argentina.
- Departamento de Ciencias Naturales, Facultad de Ciencias Exactas, Físico-Químicas y Naturales, Universidad Nacional de Río Cuarto, Agencia Postal 3, Río Cuarto, Córdoba, 5800, Argentina.
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12
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Li HZ, Peng J, Yang K, Zhang Y, Chen QL, Zhu YG, Cui L. Single-cell exploration of active phosphate-solubilizing bacteria across diverse soil matrices for sustainable phosphorus management. NATURE FOOD 2024; 5:673-683. [PMID: 39103543 DOI: 10.1038/s43016-024-01024-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 07/10/2024] [Indexed: 08/07/2024]
Abstract
Phosphate-solubilizing bacteria (PSB) are crucial for enhancing phosphorus bioavailability and regulating phosphorus transformation processes. However, the in situ phosphorus-solubilizing activity and the link between phenotypes and genotypes for PSB remain unidentified. Here we employed single-cell Raman spectroscopy combined with heavy water to discern and quantify soil active PSB. Our results reveal that PSB abundance and in situ activity differed significantly between soil types and fertilization treatments. Inorganic fertilizer input was the key driver for active PSB distribution. Targeted single-cell sorting and metagenomic sequencing of active PSB uncovered several low-abundance genera that are easily overlooked within bulk soil microbiota. We elucidate the underlying functional genes and metabolic pathway, and the interplay between phosphorus and carbon cycling involved in high phosphorus solubilization activity. Our study provides a single-cell approach to exploring PSB from native environments, enabling the development of a microbial solution for the efficient agronomic use of phosphorus and mitigating the phosphorus crisis.
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Affiliation(s)
- Hong-Zhe Li
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | | | - Kai Yang
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Yiyue Zhang
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Qing-Lin Chen
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
| | - Yong-Guan Zhu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.
| | - Li Cui
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.
- Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.
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13
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Unnikrishnan BV, Binitha NK. Positive effect of inoculation with an Aspergillus strain on phosphorus and iron nutrition plus volatile organic compounds in rice. Folia Microbiol (Praha) 2024; 69:865-874. [PMID: 38200388 DOI: 10.1007/s12223-024-01129-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 12/28/2023] [Indexed: 01/12/2024]
Abstract
We explored the potential of a fungal strain Aspergillus costaricensis KS1 for modulating growth and nutrient mobilization in rice. At laboratory conditions, there was a decline in pH of the medium on inoculation with the strain and the production of citric acid was observed under broth conditions. Similarly, there was higher solubilization of tricalcium phosphate and siderophore production in liquid medium on inoculation with the strain. The effect of inoculation of KS1 was studied in rice and higher growth and yield were observed on inoculation compared to control. The content of phosphorus and iron in stem and roots of KS1 inoculated plants was higher in comparison with uninoculated control. There was also increased availability of phosphorus and iron content in soil grown with KS1 inoculated plants. In addition, inoculation with strain resulted in a higher content of volatile organic compounds such as linoleic acid, linolenic acid, and ethyl isoallocholate in stem of rice. A. costaricensis KS1 can be used for improving phosphorus and iron nutrition and impart tolerance against stresses in rice.
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Affiliation(s)
| | - Nadayi Karayi Binitha
- Department of Soil Science and Agricultural Chemistry, College of Agriculture, Kerala Agricultural University, Kasaragod, Kerala, India
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14
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Fu SF, Balasubramanian VK, Chen CL, Tran TT, Muthuramalingam JB, Chou JY. The phosphate-solubilising fungi in sustainable agriculture: unleashing the potential of fungal biofertilisers for plant growth. Folia Microbiol (Praha) 2024; 69:697-712. [PMID: 38937405 DOI: 10.1007/s12223-024-01181-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 06/06/2024] [Indexed: 06/29/2024]
Abstract
Phosphate-solubilising fungi (PSF) are beneficial microorganisms that play a pivotal role in plant growth by increasing the availability of phosphorus (P) in soil. Although phosphorus is an essential nutrient for plants, it often becomes inaccessible as it binds into insoluble forms. PSF effectively facilitate the release of this bound phosphorus through diverse mechanisms. Numerous fungal species demonstrate the ability to solubilise various types of phosphate compounds. Among the commonly researched PSF are Penicillium, Aspergillus, Rhizopus, Fusarium, Trichoderma, and Sclerotium. Moreover, yeasts such as Saccharomyces cerevisiae can potentially be leveraged as PSF. PSF secrete organic acids that chelate phosphate ions, thereby increasing their solubility in the soil. Moreover, PSF contribute to the decomposition of organic phosphorus compounds in soil by employing enzymes such as phosphatases, phytases, and phosphonatases. Furthermore, PSF can interact with other soil microorganisms, including nitrogen-fixing bacteria and arbuscular mycorrhizal fungi (AM-fungi), fostering synergistic effects that further enhance plant growth and nutrient absorption. The utilisation of PSF as biofertilisers offers numerous advantages over chemical fertilisers, including environmental friendliness, cost-effectiveness, and enhanced fertiliser utilisation efficiency. Furthermore, PSF can prove beneficial in challenging environments characterised by high phosphate sorption. Hence, this review serves as an updated study aimed at broadening the understanding of PSF and its potential applications in P solubilisation. This review also focuses on the diversity of PSF, the mechanisms underlying solubilisation, ecological roles of PSF in soil microbiome, and the benefits of sustainable agriculture. By delving into the ecological roles of PSF and their potential as biofertilisers, this study contributes to a deeper understanding of sustainable agriculture practices and addresses challenges in phosphate-scarce environments.
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Affiliation(s)
- Shih-Feng Fu
- Department of Biology, National Changhua University of Education, Changhua City, 500, Taiwan
| | | | - Chih-Ling Chen
- Department of Biology, National Changhua University of Education, Changhua City, 500, Taiwan
| | - Thuy Trang Tran
- Department of Biology, National Changhua University of Education, Changhua City, 500, Taiwan
- Department of Food Science, Penn State University, University Park, PA, 16802, USA
| | | | - Jui-Yu Chou
- Department of Biology, National Changhua University of Education, Changhua City, 500, Taiwan.
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15
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Benmrid B, Ghoulam C, Ammar I, Nkir D, Saidi R, Staropoli A, Iacomino G, ELhajjami E, Cheto S, Geistlinger J, Idbella M, Bargaz A. Drought-tolerant rhizobacteria with predicted functional traits enhanced wheat growth and P uptake under moderate drought and low P-availability. Microbiol Res 2024; 285:127795. [PMID: 38824819 DOI: 10.1016/j.micres.2024.127795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 05/06/2024] [Accepted: 05/30/2024] [Indexed: 06/04/2024]
Abstract
This study aims to investigate the effect of isolated drought-tolerant rhizobacteria, spanning various groups, such as nitrogen-fixing bacteria (NFB), phosphate solubilizing bacteria (PSB), and other plant growth promoting rhizobacteria (PGPR), on the growth of wheat (Triticum durum) plants, focusing on various morphological and physiological responses under moderate drought and low-P availability. Among 343 rhizobacterial morphotypes, 16 exhibited tolerance to NaCl and PEG-6000. These included 8 PSB, 4 NFB, and 4 osmotolerant-PGPR groups, distributed across 14 different genera. Biochemical characterization showcased diverse PGP capabilities, particularly in P solubilization. The dynamic responses of drought-tolerant PSB to salt and PEG-6000-induced drought stress involved variations in organic acid (OA) secretion, with specific acids, including palmitic, lactic, and stearic, playing crucial roles in enhancing available P fractions. Inoculation with rhizobacteria significantly increased both shoot (SDW) and root (RDW) dry weights of wheat plants, as well as rhizosphere available P. PSB11 (Arthrobacter oryzae) emerged as the most effective strain, plausibly due to its positive impact on root morphological traits (length, surface, and volume). Other isolates, PSB10 (Priestia flexa), PSB13 (Bacillus haynesii), and particularly PGPR2 (Arthrobacter pascens) significantly increased shoot P content (up to 68.91 %), with a 2-fold increase in chlorophyll content. The correlation analysis highlighted positive associations between SDW, shoot P content, chlorophyll content index (CCI), and leaf area. Additionally, a negative correlation emerged between microbial biomass P and root morphophysiological parameters. This pattern could be explained by reduced competition between plants and rhizobacteria for accessible P, as indicated by low microbial biomass P and strong plant growth. Our investigation reveals the potential of drought-tolerant rhizobacteria in enhancing wheat resilience to moderate drought and low-P conditions. This is demonstrated through exceptional performance in influencing root architecture, P utilization efficiency, and overall plant physiological parameters. Beyond these outcomes, the innovative isolation procedure employed, targeting rhizobacteria from diverse groups, opens new avenues for targeted isolation techniques. This unique approach contributes to the novelty of our study, offering promising prospects for targeted bioinoculants in mitigating the challenges of drought and P deficiency in wheat cultivation.
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Affiliation(s)
- Bouchra Benmrid
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco.
| | - Cherki Ghoulam
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco; Agrobiotechnology & Bioengineering Center, Research Unit CNRST labeled, Cadi Ayyad University, Faculty of Sciences and Techniques, Marrakech 40000, Morocco
| | - Ibnyasser Ammar
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco
| | - Dounia Nkir
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco
| | - Rym Saidi
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco
| | - Alessia Staropoli
- Department of Agricultural Sciences, University of Naples Federico II, Portici 80055, Italy; Institute for Sustainable Plant Protection, National Research Council, Naples 80055, Italy
| | - Giuseppina Iacomino
- Department of Agricultural Sciences, University of Naples Federico II, Portici 80055, Italy
| | - Ezzoubair ELhajjami
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco
| | - Said Cheto
- Agrobiotechnology & Bioengineering Center, Research Unit CNRST labeled, Cadi Ayyad University, Faculty of Sciences and Techniques, Marrakech 40000, Morocco
| | | | - Mohamed Idbella
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco; Department of Agricultural Sciences, University of Naples Federico II, Portici 80055, Italy
| | - Adnane Bargaz
- Plant-Microbe Interactions Laboratory, AgroBiosciences Program, College of Agriculture and Environmental Sciences, Mohammed VI Polytechnic University, Ben Guerir 43150, Morocco.
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16
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Asrade DA, Kulhánek M, Balík J, Černý J, Sedlář O, Suran P. Phosphorus Availability and Balance with Long-Term Sewage Sludge and Nitrogen Fertilization in Chernozem Soil under Maize Monoculture. PLANTS (BASEL, SWITZERLAND) 2024; 13:2037. [PMID: 39124155 PMCID: PMC11314305 DOI: 10.3390/plants13152037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2024] [Revised: 07/17/2024] [Accepted: 07/22/2024] [Indexed: 08/12/2024]
Abstract
A continuous long-term field experiment with maize monoculture was conducted to evaluate the P availability and balance, DM yield, P uptake, and P sorption parameters in chernozem soil after 27 years. A total of 2 doses of nitrogen (120 and 240 kg ha-1) were applied as mineral nitrogen (N120 and N240) and sewage sludge (SS120 and SS240) and compared with unfertilized control (Con). The aboveground biomass (DM) yields significantly increased in the order of Con < SS120 < SS240 < N120 < N240 treatments and the maximum P uptake was recorded for both N240 and SS240 (25.1 kg P ha-1) according to the nutrient application gradient. The N120 and N240 treatments positively influenced the DM yield but negatively influenced the P balance (-648 and -678 kg P ha-1 27 years-1), gradually bringing a risk of P deficiency in the soil. On the other hand, applications of SS120 and SS240 positively influenced the P availability and pseudototal (PAR) content in the soil, which resulted in a buildup of legacy P or an increase in P saturation greater than the environmental threshold value. Aluminum was found to be a major controlling sorption factor for P in our chernozem soil.
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Affiliation(s)
| | - Martin Kulhánek
- Department of Agroenvironmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, 165 00 Prague, Czech Republic; (D.A.A.); (J.B.); (J.Č.); (O.S.); (P.S.)
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17
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Zhao S, Liu G, Xiong J, Chang D, Li Y, Wang W, Chang H, Wang D. Evaluation of hydrochar-derived modifier and water-soluble fertilizer on saline soil improvement and pasture growth. Sci Rep 2024; 14:16759. [PMID: 39033168 PMCID: PMC11271460 DOI: 10.1038/s41598-024-66615-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 07/02/2024] [Indexed: 07/23/2024] Open
Abstract
Soil salinization poses a serious threat to crop growth. The selection of appropriate soil modifiers and water-soluble fertilizers for saline soils represents a crucial method for enhancing crop yields. The modifiers and medium-element water-soluble fertilizers were prepared using hydrochar derived from rice straw. Two distinct experiments were designed to study the effect of modifiers and water-soluble fertilizers on saline soils. The first experiment, designated as the "Soil Cultivation Experiment" , sought to investigate the impact of various modifiers on soil quality. The second experiment, designated as the "Method of Field Micro-Area Experiment", aimed to assess the influence of water-soluble fertilizers on saline soils. The results showed that the application of modifiers and water-soluble fertilizers significantly enhanced comprehensive soil physical and chemical properties, crop growth, soil enzyme activity, and other key indicators in saline and alkaline soils. The optimal dosage of the modifier was 20 g/kg, which reduced the pH value from 8.62 to 8.21 and the decreased alkalinity by 8.26%. Furthermore, their application effectively boosted nutrient levels, including organic matter, and increased soil enzyme activity. The biomass of alfalfa showed enhancements of 63.01% and 20.87% and the biomass of leymus chinensis increased by 29.39% and 9.02% for the two batches, respectively. Notably, the application of water-soluble fertilizer yielded achieved superior results. This study also provided a theoretical basis for their future application in soda saline-alkali soil.
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Affiliation(s)
- Shengchen Zhao
- College of Resource and Environmental Science, Jilin Agricultural University, Changchun, 130118, Jilin, China
| | - Gang Liu
- School of Computer Science, Baicheng Normal University, Baicheng, 137000, Jilin, China
| | - Jiawei Xiong
- College of Traditional Chinese Medicine, Jilin Agricultural University, Changchun, 130118, Jilin, China
| | - Danfeng Chang
- College of Resource and Environmental Science, Jilin Agricultural University, Changchun, 130118, Jilin, China
| | - Yunhui Li
- College of Engineering, Jilin Normal University, Siping, 136000, Jilin, China
| | - Wei Wang
- College of Engineering, Jilin Normal University, Siping, 136000, Jilin, China
| | - Haibo Chang
- College of Resource and Environmental Science, Jilin Agricultural University, Changchun, 130118, Jilin, China.
- Scientific and Technological Innovation Center of Health Products and Medical Materials With Characteristic Resources of Jilin Province, Changchun, 130118, China.
| | - Dapeng Wang
- College of Resource and Environmental Science, Jilin Agricultural University, Changchun, 130118, Jilin, China.
- Scientific and Technological Innovation Center of Health Products and Medical Materials With Characteristic Resources of Jilin Province, Changchun, 130118, China.
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18
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Kim I, Woo H, Chhetri G, Park S, Seo T. A novel exopolysaccharide-producing bacterium, Pseudescherichia liriopis sp. nov. isolated from Liriope platyphylla, enhances the growth of Daucus carota subsp. sativus under drought and salinity stress. FRONTIERS IN PLANT SCIENCE 2024; 15:1417639. [PMID: 39081520 PMCID: PMC11286387 DOI: 10.3389/fpls.2024.1417639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 06/21/2024] [Indexed: 08/02/2024]
Abstract
Biological and abiotic stresses in plant growth are associated with reduced crop yields. Therefore, improving plant stress resistance can be a crucial strategy to improve crop production. To overcome these problems, plant growth-promoting bacteria are emphasized as one of the alternative tools for sustainable agriculture. This study found a novel strain (L3T) of a plant growth-promoting bacterium in fermented Liriope platyphylla fruit. Strain L3T showed the ability to promote plant growth. The L3T strain promoted plant growth of D. carota subsp. sativus, increasing the length (increase rate compared to the control group, 36.98%), diameter (47.06%), and weight of carrots (81.5%), ultimately increasing the edible area. In addition, we confirmed that plant growth was improved even in situations that inhibited plant growth, such as salinity and drought stress. Strain L3T performed indole production, siderophore production, phosphate solubilization, and nitrogen fixation, all characteristics of a strain that promotes plant growth. Genome analysis revealed genes involved in the growth promotion effects of strain L3T. Additionally, the properties of exopolysaccharides were identified and characterized using FTIR, TGA, and UHPLC. Our results demonstrated that L3 isolated from fermented L. platyphylla fruit can be used to simultaneously alleviate drought and NaCl stress.
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Affiliation(s)
| | | | | | | | - Taegun Seo
- Department of Life Science, Dongguk University-Seoul, Goyang, Republic of Korea
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19
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Bourak K, Oulkhir FE, Maghnia FZ, Massart S, Biskri L, Jijakli MH, Allaoui A. A Comprehensive Approach Combining Short-Chain Polyphosphate and Bacterial Biostimulants for Effective Nutrient Solubilization and Enhanced Wheat Growth. Microorganisms 2024; 12:1423. [PMID: 39065191 PMCID: PMC11279140 DOI: 10.3390/microorganisms12071423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 07/04/2024] [Accepted: 07/11/2024] [Indexed: 07/28/2024] Open
Abstract
Phosphorus constitutes a crucial macronutrient for crop growth, yet its availability often limits food production. Efficient phosphorus management is crucial for enhancing crop yields and ensuring food security. This study aimed to enhance the efficiency of a short-chain polyphosphate (PolyP) fertilizer by integrating it with plant growth-promoting bacteria (PGPB) to improve nutrient solubilization and wheat growth. Specifically, the study investigated the effects of various bacterial strains on wheat germination and growth when used in conjunction with PolyP. To achieve this, a greenhouse experiment was conducted in which the wheat rhizosphere was amended with a short-chain PolyP fertilizer. Based on the morphological aspect, eight bacteria, designated P1 to P8, were isolated and further characterized. Plant growth-promoting traits were observed in all bacterial strains, as they presented the ability to produce Indole Acetic Acid (IAA) in significant amounts ranging from 7.5 ± 0.3 µg/mL to 44.1 ± 2 µg/mL, expressed by B. tropicus P4 and P. soyae P1, respectively. They also produced ammonia, hydrogen cyanide (HCN), and siderophores. Their effect against the plant pathogen Fusarium culmorum was also assessed, with P. reinekei P2 demonstrating the highest biocontrol activity as it presented a total inhibitory effect. Additionally, some strains exhibited the ability to solubilize/hydrolyze phosphorus, potassium, and zinc. In vivo, the initial growth potential of wheat seeds indicated that those inoculated with the isolated strains exhibited elevated germination rates and enhanced root growth. Based on their plant growth-promoting traits and performance in the germination assay, three strains were selected for producing the best results, specifically phosphorus hydrolyzation/solubilization, zinc solubilization, IAA production, HCN, and siderophores production. Wheat seeds were inoculated by drenching in a bacterial suspension containing 1010 CFU/mL of log phase culture, and an in planta bioassay was conducted in a growth chamber using three selected strains (Pseudomonas soyae P1, Pseudomonas reinekei P2, and Bacillus tropicus P4), applied either individually or with PolyP on a P-deficient soil (28 mg/kg of P Olsen). Our findings demonstrated that the combination of Pseudomonas soyae P1 and PolyP achieved the highest shoot biomass, averaging 41.99 ± 0.87 g. Notably, applying P. soyae P1 or Bacillus tropicus P4 alone yielded similar results to the use of PolyP alone. At the heading growth stage, the combination of Bacillus tropicus P4 and PolyP significantly increased the Chlorophyll Content Index (CCI) to 37.02 µmol/m2, outperforming both PolyP alone (24.07 µmol/m2) and the control (23.06 µmol/m2). This study presents an innovative approach combining short-chain PolyP with bacterial biostimulants to enhance nutrient availability and plant growth. By identifying and characterizing effective bacterial strains, it offers a sustainable alternative to conventional fertilizers.
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Affiliation(s)
- Kaoutar Bourak
- Microbiology Laboratory, Mohammed VI Polytechnic University, Lot 660, Hay Moulay Rachid, Benguerir 43150, Morocco; (K.B.)
- Integrated and Urban Plant Pathology Laboratory, Terra Research Center, Gembloux Agro-Bio-Tech, Liege University, 5030 Gembloux, Belgium; (F.Z.M.); (S.M.)
| | - Fatima Ezzahra Oulkhir
- Microbiology Laboratory, Mohammed VI Polytechnic University, Lot 660, Hay Moulay Rachid, Benguerir 43150, Morocco; (K.B.)
| | - Fatima Zahra Maghnia
- Integrated and Urban Plant Pathology Laboratory, Terra Research Center, Gembloux Agro-Bio-Tech, Liege University, 5030 Gembloux, Belgium; (F.Z.M.); (S.M.)
| | - Sebastien Massart
- Integrated and Urban Plant Pathology Laboratory, Terra Research Center, Gembloux Agro-Bio-Tech, Liege University, 5030 Gembloux, Belgium; (F.Z.M.); (S.M.)
| | - Latefa Biskri
- Microbiology Laboratory, Mohammed VI Polytechnic University, Lot 660, Hay Moulay Rachid, Benguerir 43150, Morocco; (K.B.)
| | - M. Haissam Jijakli
- Integrated and Urban Plant Pathology Laboratory, Terra Research Center, Gembloux Agro-Bio-Tech, Liege University, 5030 Gembloux, Belgium; (F.Z.M.); (S.M.)
| | - Abdelmounaaim Allaoui
- Microbiology Laboratory, Mohammed VI Polytechnic University, Lot 660, Hay Moulay Rachid, Benguerir 43150, Morocco; (K.B.)
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20
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Kong T, Sun X, Gu Z, Yang N, Huang Y, Lan L, Gao P, Liu H, Wang Y, Jiang F, Li B, Sun W. Differential Mechanisms of Microbial As(III) and Sb(III) Oxidation and Their Contribution to Tailings Reclamation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:11447-11458. [PMID: 38899977 DOI: 10.1021/acs.est.4c00863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]
Abstract
Mine tailings are extremely oligotrophic environments frequently contaminated with elevated As and Sb, making As(III) and Sb(III) oxidation potentially important energy sources for the tailing microbiome. Although they have been proposed to share similar metabolic pathways, a systemic comparison of the As(III) and Sb(III) oxidation mechanisms and energy utilization efficiencies requires further elucidation. In this study, we employed a combination of physicochemical, molecular, and bioinformatic analyses to compare the kinetic and genetic mechanisms of As(III) and Sb(III) oxidation as well as their respective energy efficiencies for fueling the key nutrient acquisition metabolisms. Thiobacillus and Rhizobium spp. were identified as functional populations for both As(III) and Sb(III) oxidation in mine tailings by DNA-stable isotope probing. However, these microorganisms mediated As(III) and Sb(III) oxidation via different metabolic pathways, resulting in preferential oxidation of Sb(III) over As(III). Notably, both As(III) and Sb(III) oxidation can facilitate nitrogen fixation and phosphate solubilization in mine tailings, with Sb(III) oxidation being more efficient in powering these processes. Thus, this study provided novel insights into the microbial As(III) and Sb(III) oxidation mechanisms and their respective nutrient acquisition efficiencies, which may be critical for the reclamation of mine tailings.
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Affiliation(s)
- Tianle Kong
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Xiaoxu Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Zhibin Gu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300350, China
| | - Nie Yang
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Yuqing Huang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Ling Lan
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Pin Gao
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Huaqing Liu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Yize Wang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Feng Jiang
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou 510640, China
| | - Baoqin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
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21
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Kumar D, Ali M, Sharma N, Sharma R, Manhas RK, Ohri P. Unboxing PGPR-mediated management of abiotic stress and environmental cleanup: what lies inside? ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:47423-47460. [PMID: 38992305 DOI: 10.1007/s11356-024-34157-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 06/24/2024] [Indexed: 07/13/2024]
Abstract
Abiotic stresses including heavy metal toxicity, drought, salt and temperature extremes disrupt the plant growth and development and lowers crop output. Presence of environmental pollutants further causes plants suffering and restrict their ability to thrive. Overuse of chemical fertilizers to reduce the negative impact of these stresses is deteriorating the environment and induces various secondary stresses to plants. Therefore, an environmentally friendly strategy like utilizing plant growth-promoting rhizobacteria (PGPR) is a promising way to lessen the negative effects of stressors and to boost plant growth in stressful conditions. These are naturally occurring inhabitants of various environments, an essential component of the natural ecosystem and have remarkable abilities to promote plant growth. Furthermore, multifarious role of PGPR has recently been widely exploited to restore natural soil against a range of contaminants and to mitigate abiotic stress. For instance, PGPR may mitigate metal phytotoxicity by boosting metal translocation inside the plant and changing the metal bioavailability in the soil. PGPR have been also reported to mitigate other abiotic stress and to degrade environmental contaminants remarkably. Nevertheless, despite the substantial quantity of information that has been produced in the meantime, there has not been much advancement in either the knowledge of the processes behind the alleged positive benefits or in effective yield improvements by PGPR inoculation. This review focuses on addressing the progress accomplished in understanding various mechanisms behind the protective benefits of PGPR against a variety of abiotic stressors and in environmental cleanups and identifying the cause of the restricted applicability in real-world.
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Affiliation(s)
- Deepak Kumar
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Mohd Ali
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Nandni Sharma
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Roohi Sharma
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Rajesh Kumari Manhas
- Department of Microbiology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
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22
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Terán F, Vives-Peris V, Gómez-Cadenas A, Pérez-Clemente RM. Facing climate change: plant stress mitigation strategies in agriculture. PHYSIOLOGIA PLANTARUM 2024; 176:e14484. [PMID: 39157905 DOI: 10.1111/ppl.14484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 07/01/2024] [Accepted: 07/18/2024] [Indexed: 08/20/2024]
Abstract
Climate change poses significant challenges to global agriculture, with rising temperatures, altered precipitation patterns, and increased frequency of extreme weather events threatening crop yields. These changes exceed the adaptability thresholds of many crops, decreasing their yield and threatening food security. At plant physiological levels, climate change-induced stressors disrupt photosynthesis, growth, and reproductive processes, contributing to a reduced productivity. Furthermore, the negative impacts of climate change on agriculture are exacerbated by anthropogenic factors, with agriculture itself contributing significantly to greenhouse gas emissions. To mitigate these challenges, various approaches have been explored. This work reviews the most important physical, chemical, and biological strategies most commonly used in a broad range of agricultural crops. Among physical strategies, increasing water use efficiency without yield reduction through different irrigation strategies, and the use of foliar treatments with reflective properties to mitigate the negative effects of different stresses have been proven to be effective. Concerning chemical approaches, the exogenous treatment of plants with chemicals induces existing molecular and physiological plant defense mechanisms, enhancing abiotic stress tolerance. Regarding biological treatments, plant inoculation with mycorrhiza and plant growth-promoting rhizobacteria (PGPR) can improve enzymatic antioxidant capacity and mineral solubilization, favoring root and plant growth and enhance plant performance under stressful conditions. While these strategies provide valuable short- to medium-term solutions, there is a pressing need for new biotechnological approaches aimed at developing genotypes resistant to stressful conditions. Collaborative efforts among researchers, policymakers, and agricultural stakeholders are essential to ensure global food security in the face of ongoing climate challenges.
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Affiliation(s)
- Fátima Terán
- Ecophysiology and Biotechnology, Department of Biology, Biochemistry and Natural Sciences, Universitat Jaume I, Castellón de la Plana, Spain
| | - Vicente Vives-Peris
- Ecophysiology and Biotechnology, Department of Biology, Biochemistry and Natural Sciences, Universitat Jaume I, Castellón de la Plana, Spain
| | - Aurelio Gómez-Cadenas
- Ecophysiology and Biotechnology, Department of Biology, Biochemistry and Natural Sciences, Universitat Jaume I, Castellón de la Plana, Spain
| | - Rosa M Pérez-Clemente
- Ecophysiology and Biotechnology, Department of Biology, Biochemistry and Natural Sciences, Universitat Jaume I, Castellón de la Plana, Spain
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23
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Guo J, Zhang S, Li J. Impact of three exogenous phosphorus-solubilizing bacteria on zinc and selenium contents and rhizosphere soil nutrients of Longjing and Huangjinya tea plants. Front Microbiol 2024; 15:1413538. [PMID: 38989025 PMCID: PMC11233738 DOI: 10.3389/fmicb.2024.1413538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Accepted: 06/14/2024] [Indexed: 07/12/2024] Open
Abstract
Phosphate-solubilizing bacteria (PSB) enhance plant phosphorus utilization through their ability to dissolve phosphorus. To address the low utilization of nitrogen, phosphorus, potassium, zinc, and selenium by tea plants in acidic, selenium-rich soils, the study aimed to investigate the impact of exogenous PSB on soil nutrients and the absorption of zinc and selenium by tea plants. Following the inoculation of potted Longjing and Huangjinya varieties with exogenous phosphorus-solubilizing bacteria, we determined the concentrations of AN, AP, AK, Zn, and Se in their rhizosphere soil, in addition to the Zn and Se contents in their aboveground and belowground parts. The results show that after respective treatment with the three PSB, the concentration of available P in the tea plant rhizosphere soil significantly increased, with PMS08 having the most pronounced effect.After the same treatment, In the rhizosphere soil of Longjing tea plants, the AN content increased by 26.47%, 18.41%, and 7.51%, respectively, relative to the control, while the AK content decreased in the rhizosphere soil of Huangjinya tea plants. Inoculation with the three PSB resulted in a greater content of available Se in both the aboveground and belowground parts of the two tea plants. After inoculation with PMS20, the available Zn content of the belowground parts of Longjing and Huangjinya tea plants respectively decreased by 13.42% and 15.69% in comparison with the control. Additionally, after inoculating Longjing tea plants with PSt09 and Huangjinya tea plants with PMS08, the content of available Zn in their belowground parts significantly decreased by 9.22% and 35.74%, respectively. Evidently, the inoculation with the three phosphorus-solubilizing bacteria is beneficial for the uptake of available P by tea plants, promoting the utilization and accumulation of available Se. However, the content of AN or AK in rhizosphere soil varies between different tea plant varieties inoculated with the same kind of phosphorus-solubilizing bacteria. Moreover, the content of available Zn in tea plants also differs, highlighting the need to further investigate the differential effects of phosphorus-solubilizing bacteria on different plant varieties.
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Affiliation(s)
- JinMei Guo
- School of Geography and Resources, Guizhou Education University, Guiyang, China
- Institute of Soil and Environment Bioremediation in Karst Habitats, Guizhou Education University, Guiyang, China
- Key Laboratory of Biological Resources Exploitation and Utilization in Colleges and Universities of Guizhou Province, Guiyang, China
| | - ShuQing Zhang
- School of Geography and Resources, Guizhou Education University, Guiyang, China
- Institute of Soil and Environment Bioremediation in Karst Habitats, Guizhou Education University, Guiyang, China
- Key Laboratory of Biological Resources Exploitation and Utilization in Colleges and Universities of Guizhou Province, Guiyang, China
| | - JianFeng Li
- Institute of Soil and Environment Bioremediation in Karst Habitats, Guizhou Education University, Guiyang, China
- Key Laboratory of Biological Resources Exploitation and Utilization in Colleges and Universities of Guizhou Province, Guiyang, China
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24
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de Oliveira-Paiva CA, Bini D, de Sousa SM, Ribeiro VP, Dos Santos FC, de Paula Lana UG, de Souza FF, Gomes EA, Marriel IE. Inoculation with Bacillus megaterium CNPMS B119 and Bacillus subtilis CNPMS B2084 improve P-acquisition and maize yield in Brazil. Front Microbiol 2024; 15:1426166. [PMID: 38989019 PMCID: PMC11233657 DOI: 10.3389/fmicb.2024.1426166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 06/10/2024] [Indexed: 07/12/2024] Open
Abstract
Phosphorus (P) is a critical nutrient for plant growth, yet its uptake is often hindered by soil factors like clay minerals and metal oxides such as aluminum (Al), iron (Fe), and calcium (Ca), which bind P and limit its availability. Phosphate-solubilizing bacteria (PSB) have the unique ability to convert insoluble P into a soluble form, thereby fostering plant growth. This study aimed to assess the efficacy of inoculation of Bacillus megaterium B119 (rhizospheric) and B. subtilis B2084 (endophytic) via seed treatment in enhancing maize yield, grain P content, and enzyme activities across two distinct soil types in field conditions. Additionally, we investigated various mechanisms contributing to plant growth promotion, compatibility with commercial inoculants, and the maize root adhesion profile of these strains. During five crop seasons in two experimental areas in Brazil, Sete Lagoas-MG and Santo Antônio de Goiás-GO, single inoculations with either B119 or B2084 were implemented in three seasons, while a co-inoculation with both strains was applied in two seasons. All treatments received P fertilizer according to plot recommendations, except for control. Both the Bacillus strains exhibited plant growth-promoting properties relevant to P dynamics, including phosphate solubilization and mineralization, production of indole-3-acetic acid (IAA)-like molecules, siderophores, exopolysaccharides (EPS), biofilms, and phosphatases, with no antagonism observed with Azospirillum and Bradyrizhobium. Strain B2084 displayed superior maize root adhesion compared to B119. In field trials, single inoculations with either B119 or B2084 resulted in increased maize grain yield, with relative average productivities of 22 and 16% in Sete Lagoas and 6 and 3% in Santo Antônio de Goiás, respectively. Co-inoculation proved more effective, with an average yield increase of 24% in Sete Lagoas and 11% in Santo Antônio de Goiás compared to the non-inoculated control. Across all seasons, accumulated grain P content correlated with yield, and soil P availability in the rhizosphere increased after co-inoculation in Santo Antônio de Goiás. These findings complement previous research efforts and have led to the validation and registration of the first Brazilian inoculant formulated with Bacillus strains for maize, effectively enhancing and P grain content.
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Affiliation(s)
| | - Daniel Bini
- Microbiology Laboratory, Embrapa Milho e Sorgo, Sete Lagoas, Brazil
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Cueva-Yesquén LG, Sartoratto A, da Silva Santos A, de Melo IS, Fantinatti-Garboggini F. Pseudomonas flavocrustae sp. nov., an endophyte with plant growth promoting traits isolated from Passiflora incarnata. Sci Rep 2024; 14:14285. [PMID: 38902258 PMCID: PMC11190252 DOI: 10.1038/s41598-024-64349-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 06/07/2024] [Indexed: 06/22/2024] Open
Abstract
A polyphasic approach was applied to characterize taxonomically a novel endophytic bacterial strain, designated as EP178T, which was previously isolated from Passiflora incarnata leaves and characterized as plant-growth promoter. The strain EP178T forms Gram stain-negative and rod-shaped cells, and circular and yellow-pigmented colonies. Its growth occurs at 10-37 °C, at pH 6.0-8.0, and tolerates up to 7% (w/v) NaCl. The major cellular fatty acids found were summed feature 8 (C18:1 ω7c), summed feature 3 (C16:1 ω6c /C16:1 ω7c), and C16:0, and the predominant ubiquinone was Q-9. The phylogenetic and nucleotide-similarity analysis with 16S rRNA gene sequences showed that strain EP178T belongs to Pseudomonas genus. The genomic-based G + C content was 65.5%. The average nucleotide identity and digital DNA-DNA hybridization values between strains EP178T and the closest type strain, P. oryzihabitans DSM 6835T, were 92.6% and 52.2%, respectively. Various genes associated with plant-growth promoting mechanisms were annotated from genome sequences. Based on the phenotypic, genomic, phylogeny and chemotaxonomic data, strain EP178T represents a new species of the genus Pseudomonas, for which the name Pseudomonas flavocrustae sp. nov. was proposed. The type strain is EP178T (= CBMAI 2609T = ICMP 24844T = MUM 23.01T).
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Affiliation(s)
- Luis Gabriel Cueva-Yesquén
- Graduate Program in Genetics and Molecular Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil.
- Division of Microbial Resources, Research Center for Agriculture, Biological and Chemical, University of Campinas, Paulínia, SP, Brazil.
| | - Adilson Sartoratto
- Division of Organic and Pharmaceutical Chemical, Research Center for Agriculture, Biological and Chemical, University of Campinas, Paulínia, SP, Brazil
| | - Adriana da Silva Santos
- Division of Organic and Pharmaceutical Chemical, Research Center for Agriculture, Biological and Chemical, University of Campinas, Paulínia, SP, Brazil
| | - Itamar Soares de Melo
- Embrapa Meio Ambiente, Rodovia SP 340 Km 127.5, CP 69, Jaguariúna, SP, CEP 13820-000, Brazil
| | - Fabiana Fantinatti-Garboggini
- Graduate Program in Genetics and Molecular Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil.
- Division of Microbial Resources, Research Center for Agriculture, Biological and Chemical, University of Campinas, Paulínia, SP, Brazil.
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26
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Barajas González JA, de la Rosa YEK, Carrillo-González R, González-Chávez MDCÁ, Hidalgo Lara ME, Soto Hernández RM, Herrera Cabrera BE. NaCl Modifies Biochemical Traits in Bacterial Endophytes Isolated from Halophytes: Towards Salinity Stress Mitigation Using Consortia. PLANTS (BASEL, SWITZERLAND) 2024; 13:1626. [PMID: 38931058 PMCID: PMC11207235 DOI: 10.3390/plants13121626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 05/25/2024] [Accepted: 06/07/2024] [Indexed: 06/28/2024]
Abstract
Bacterial endophytes (120) were isolated from six halophytes (Distichlis spicata, Cynodon dactylon, Eragrostis obtusiflora, Suaeda torreyana, Kochia scoparia, and Baccharis salicifolia). These halophiles were molecularly identified and characterized with or without NaCl conditions. Characterization was based on tests such as indole acetic acid (IAA), exopolysaccharides (EPS), and siderophores (SID) production; solubilization of phosphate (P), potassium (K), zinc (Zn), and manganese (Mn); mineralization of phytate; enzymatic activity (acid and alkaline phosphatase, phytases, xylanases, and chitinases) and the mineralization/solubilization mechanisms involved (organic acids and sugars). Moreover, compatibility among bacteria was assessed. Eleven halophiles were characterized as highly tolerant to NaCl (2.5 M). The bacteria isolated were all different from each other. Two belonged to Bacillus velezensis and one to B. pumilus while the rest of bacteria were identified up to the genus level as belonging to Bacillus, Halobacillus, Halomonas, Pseudomonas, Nesterenkonia, and three strains of Oceanobacillus. The biochemical responses of nutrient solubilization and enzymatic activity were different between bacteria and were influenced by the presence of NaCl. Organic acids were involved in P mineralization and nutrient solubilization. Tartaric acid was common in the solubilization of P, Zn, and K. Maleic and vanillic acid were only detected in Zn and K solubilization, respectively. Furthermore, sugars appeared to be involved in the solubilization of nutrients; fructose was detected in the solubilization tests. Therefore, these biochemical bacterial characteristics should be corroborated in vivo and tested as a consortium to mitigate saline stress in glycophytes under a global climate change scheme that threatens to exacerbate soil salinity.
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Affiliation(s)
- Jesús Adrián Barajas González
- Programa en Edafología, Colegio de Postgraduados, Campus Montecillo, Carr. México-Texcoco km 36.5, Montecillo 56230, Mexico; (J.A.B.G.); (R.C.-G.)
| | - Yersaín Ely Keller de la Rosa
- Departamento de Biotecnología y Bioingeniería, CINVESTAV, Av. IPN 2508, Ciudad de México 07360, Mexico; (Y.E.K.d.l.R.); (M.E.H.L.)
| | - Rogelio Carrillo-González
- Programa en Edafología, Colegio de Postgraduados, Campus Montecillo, Carr. México-Texcoco km 36.5, Montecillo 56230, Mexico; (J.A.B.G.); (R.C.-G.)
| | | | - María Eugenia Hidalgo Lara
- Departamento de Biotecnología y Bioingeniería, CINVESTAV, Av. IPN 2508, Ciudad de México 07360, Mexico; (Y.E.K.d.l.R.); (M.E.H.L.)
| | - Ramón Marcos Soto Hernández
- Programa en Botánica, Colegio de Postgraduados, Campus Montecillo, Carr. México-Texcoco km 36.5, Montecillo 56230, Mexico;
| | - Braulio Edgar Herrera Cabrera
- Programa en Estrategias de Desarrollo Agrícola Regional, Colegio de Postgraduados, Campus Puebla, Carr. Fed. Mex-Pue, Puebla 72130, Mexico;
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27
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El-Nagar D, Salem SH, El-Zamik FI, El-Basit HMIA, Galal YGM, Soliman SM, Aziz HAA, Rizk MA, El-Sayed ESR. Bioprospecting endophytic fungi for bioactive metabolites with seed germination promoting potentials. BMC Microbiol 2024; 24:200. [PMID: 38851702 PMCID: PMC11162052 DOI: 10.1186/s12866-024-03337-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 05/16/2024] [Indexed: 06/10/2024] Open
Abstract
There is an urgent need for new bioactive molecules with unique mechanisms of action and chemistry to address the issue of incorrect use of chemical fertilizers and pesticides, which hurts both the environment and the health of humans. In light of this, research was done for this work to isolate, identify, and evaluate the germination-promoting potential of various plant species' fungal endophytes. Zea mays L. (maize) seed germination was examined using spore suspension of 75 different endophytic strains that were identified. Three promising strains were identified through screening to possess the ability mentioned above. These strains Alternaria alternate, Aspergilus flavus, and Aspergillus terreus were isolated from the stem of Tecoma stans, Delonix regia, and Ricinus communis, respectively. The ability of the three endophytic fungal strains to produce siderophore and indole acetic acid (IAA) was also examined. Compared to both Aspergillus flavus as well as Aspergillus terreus, Alternaria alternata recorded the greatest rates of IAA, according to the data that was gathered. On CAS agar versus blue media, all three strains failed to produce siderophores. Moreover, the antioxidant and antifungal potentials of extracts from these fungi were tested against different plant pathogens. The obtained results indicated the antioxidant and antifungal activities of the three fungal strains. GC-Mass studies were carried out to determine the principal components in extracts of all three strains of fungi. The three strains' fungus extracts included both well-known and previously unidentified bioactive compounds. These results may aid in the development of novel plant growth promoters by suggesting three different fungal strains as sources of compounds that may improve seed germination. According to the study that has been given, as unexplored sources of bioactive compounds, fungal endophytes have great potential.
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Affiliation(s)
- Dina El-Nagar
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - S H Salem
- Department of Microbiology, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | - Fatma I El-Zamik
- Department of Microbiology, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | | | - Y G M Galal
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - S M Soliman
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - H A Abdel Aziz
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - M A Rizk
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt
| | - El-Sayed R El-Sayed
- Plant Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Cairo, Egypt.
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28
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Bhat MA, Mishra AK, Shah SN, Bhat MA, Jan S, Rahman S, Baek KH, Jan AT. Soil and Mineral Nutrients in Plant Health: A Prospective Study of Iron and Phosphorus in the Growth and Development of Plants. Curr Issues Mol Biol 2024; 46:5194-5222. [PMID: 38920984 PMCID: PMC11201952 DOI: 10.3390/cimb46060312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 05/17/2024] [Accepted: 05/19/2024] [Indexed: 06/27/2024] Open
Abstract
Plants being sessile are exposed to different environmental challenges and consequent stresses associated with them. With the prerequisite of minerals for growth and development, they coordinate their mobilization from the soil through their roots. Phosphorus (P) and iron (Fe) are macro- and micronutrient; P serves as an important component of biological macromolecules, besides driving major cellular processes, including photosynthesis and respiration, and Fe performs the function as a cofactor for enzymes of vital metabolic pathways. These minerals help in maintaining plant vigor via alterations in the pH, nutrient content, release of exudates at the root surface, changing dynamics of root microbial population, and modulation of the activity of redox enzymes. Despite this, their low solubility and relative immobilization in soil make them inaccessible for utilization by plants. Moreover, plants have evolved distinct mechanisms to cope with these stresses and coregulate the levels of minerals (Fe, P, etc.) toward the maintenance of homeostasis. The present study aims at examining the uptake mechanisms of Fe and P, and their translocation, storage, and role in executing different cellular processes in plants. It also summarizes the toxicological aspects of these minerals in terms of their effects on germination, nutrient uptake, plant-water relationship, and overall yield. Considered as an important and indispensable component of sustainable agriculture, a separate section covers the current knowledge on the cross-talk between Fe and P and integrates complete and balanced information of their effect on plant hormone levels.
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Affiliation(s)
- Mujtaba Aamir Bhat
- School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri 185234, J&K, India; (M.A.B.); (S.N.S.); (M.A.B.); (S.J.)
| | - Awdhesh Kumar Mishra
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541, Republic of Korea;
| | - Sheezma Nazir Shah
- School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri 185234, J&K, India; (M.A.B.); (S.N.S.); (M.A.B.); (S.J.)
| | - Mudasir Ahmad Bhat
- School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri 185234, J&K, India; (M.A.B.); (S.N.S.); (M.A.B.); (S.J.)
| | - Saima Jan
- School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri 185234, J&K, India; (M.A.B.); (S.N.S.); (M.A.B.); (S.J.)
| | - Safikur Rahman
- Department of Botany, Munshi Singh College, BR Ambedkar Bihar University, Muzaffarpur 845401, Bihar, India;
| | - Kwang-Hyun Baek
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541, Republic of Korea;
| | - Arif Tasleem Jan
- School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri 185234, J&K, India; (M.A.B.); (S.N.S.); (M.A.B.); (S.J.)
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Elbakary M, Hammad SF, Youseif SH, Soliman HSM. Revealing the diversity of Jojoba-associated fungi using amplicon metagenome approach and assessing the in vitro biocontrol activity of its cultivable community. World J Microbiol Biotechnol 2024; 40:205. [PMID: 38755302 DOI: 10.1007/s11274-024-03986-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 04/13/2024] [Indexed: 05/18/2024]
Abstract
Jojoba shrubs are wild plants cultivated in arid and semiarid lands and characterized by tolerance to drought, salinity, and high temperatures. Fungi associated with such plants may be attributed to the tolerance of host plants against biotic stress in addition to the promotion of plant growth. Previous studies showed the importance of jojoba as jojoba oil in the agricultural field; however, no prior study discussed the role of jojoba-associated fungi (JAF) in reflecting plant health and the possibility of using JAF in biocontrol. Here, the culture-independent and culture-dependent approaches were performed to study the diversity of the jojoba-associated fungi. Then, the cultivable fungi were evaluated for in-vitro antagonistic activity and in vitro plant growth promotion assays. The metagenome analysis revealed the existence of four fungal phyla: Ascomycota, Aphelidiomycota, Basidiomycota, and Mortierellomycota. The phylum Ascomycota was the most common and had the highest relative abundance in soil, root, branch, and fruit samples (59.7%, 50.7%, 49.8%, and 52.4%, respectively). Alternaria was the most abundant genus in aboveground tissues: branch (43.7%) and fruit (32.1%), while the genus Discosia had the highest abundance in the underground samples: soil (24%) and root (30.7%). For the culture-dependent method, a total of 14 fungi were isolated, identified, and screened for their chitinolytic and antagonist activity against three phytopathogenic fungi (Fusarium oxysporum, Alternaria alternata and Rhizoctonia solani) as well as their in vitro plant growth promotion (PGP) activity. Based on ITS sequence analysis, the selected potent isolates were identified as Aspergillus stellatusEJ-JFF3, Aspergillus flavus EJ-JFF4, Stilbocrea sp. EJ-JLF1, Fusarium solani EJ-JRF3, and Amesia atrobrunneaEJ-JSF4. The endophyte strain A. flavus EJ-JFF4 exhibited the highest chitinolytic activity (9 Enzyme Index) and antagonistic potential against Fusarium oxysporum, Alternaria alternata, and Rhizoctonia solani phytopathogens with inhibitory percentages of 72, 70, and 80 respectively. Also, A. flavus EJ-JFF4 had significant multiple PGP properties, including siderophore production (69.3%), phosphate solubilization (95.4 µg ml-1). The greatest production of Indol-3-Acetic Acid was belonged to A. atrobrunnea EJ-JSF4 (114.5 µg ml-1). The analysis of FUNGuild revealed the abundance of symbiotrophs over other trophic modes, and the guild of endophytes was commonly assigned in all samples. For the first time, this study uncovered fungal diversity associated with jojoba plants using a culture-independent approach and in-vitro assessed the roles of cultivable fungal strains in promoting plant growth and biocontrol. The present study indicated the significance of jojoba shrubs as a potential source of diverse fungi with high biocontrol and PGP activities.
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Affiliation(s)
- Mustafa Elbakary
- Biotechnology Program, Basic and Applied Science Institute, Egypt-Japan University of Science and Technology, Alexandria, 21934, Egypt.
- Department of Nucleic Acids and Protein Structure, Agricultural Research Center, Agricultural Genetic Engineering Research Institute, Giza, 12619, Egypt.
| | - Sherif F Hammad
- Pharm D Program, Egypt-Japan University of Science and Technology, New Borg El-Arab City, Alexandria, 21934, Egypt
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Helwan University, Ain-Helwan, Cairo, 11795, Egypt
| | - Sameh H Youseif
- School of Biotechnology, Nile University, Giza, 12677, Egypt.
- Department of Microbial Genetic Resources, Agricultural Research Center (ARC), National Gene Bank, Giza, 12619, Egypt.
| | - Hesham S M Soliman
- Pharm D Program, Egypt-Japan University of Science and Technology, New Borg El-Arab City, Alexandria, 21934, Egypt
- Pharmacognosy Department, Helwan University, Ain-Helwan, Cairo, 11795, Egypt
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Breedt G, Korsten L, Gokul JK. Influence of Soil Phosphate on Rhizobacterial Performance in Affecting Wheat Yield. Curr Microbiol 2024; 81:170. [PMID: 38734822 PMCID: PMC11088555 DOI: 10.1007/s00284-024-03685-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 04/01/2024] [Indexed: 05/13/2024]
Abstract
As a primary nutrient in agricultural soils, phosphorus plays a crucial but growth-limiting role for plants due to its complex interactions with various soil elements. This often results in excessive phosphorus fertilizer application, posing concerns for the environment. Agri-research has therefore shifted focus to increase fertilizer-use efficiency and minimize environmental impact by leveraging plant growth-promoting rhizobacteria. This study aimed to evaluate the in-field incremental effect of inorganic phosphate concentration (up to 50 kg/ha/P) on the ability of two rhizobacterial isolates, Lysinibacillus sphaericus (T19), Paenibacillus alvei (T29), from the previous Breedt et al. (Ann Appl Biol 171:229-236, 2017) study on maize in enhancing the yield of commercially grown Duzi® cultivar wheat. Results obtained from three seasons of field trials revealed a significant relationship between soil phosphate concentration and the isolates' effectiveness in improving wheat yield. Rhizospheric samples collected at flowering during the third season, specifically to assess phosphatase enzyme activity at the different soil phosphate levels, demonstrated a significant decrease in soil phosphatase activity when the phosphorus rate reached 75% for both isolates. Furthermore, in vitro assessments of inorganic phosphate solubilization by both isolates at five increments of tricalcium phosphate-amended Pikovskaya media found that only isolate T19 was capable of solubilizing tricalcium at concentrations exceeding 3 mg/ml. The current study demonstrates the substantial influence of inorganic phosphate on the performance of individual rhizobacterial isolates, highlighting that this is an essential consideration when optimizing these isolates to increase wheat yield in commercial cultivation.
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Affiliation(s)
- Gerhardus Breedt
- Limpopo Department of Agriculture and Rural Development, Towoomba ADC, Private Bag X1615, Bela-Bela, South Africa
- Department of Plant and Soil Sciences, University of Pretoria, Private Bag X20, Pretoria, South Africa
| | - Lise Korsten
- Department of Plant and Soil Sciences, University of Pretoria, Private Bag X20, Pretoria, South Africa
- Department of Science and Innovation - National Research Foundation Centre of Excellence in Food Security, Pretoria, South Africa
| | - Jarishma Keriuscia Gokul
- Department of Plant and Soil Sciences, University of Pretoria, Private Bag X20, Pretoria, South Africa.
- Department of Biochemistry, Genetics and Microbiology, Centre for Microbial Ecology and Genomics, University of Pretoria, Private Bag X20, Pretoria, South Africa.
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Singh P, Sharma A, Mukherjee S, Bordoloi M, Nandi SP. Evaluation of commercial importance of endophytes isolated from Argemone mexicana and Papaver rhoeas. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024:10.1007/s11356-024-33527-z. [PMID: 38710850 DOI: 10.1007/s11356-024-33527-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 04/27/2024] [Indexed: 05/08/2024]
Abstract
The paper industry is a composite one constituting different types of mills, processes, and products. The paper industries consume large amounts of resources, like wood and water. These industries also create huge amounts of waste that have to be treated. In our study, 23 endophytic bacteria were isolated from Argemone mexicana, and 16 endophytic bacteria were isolated from Papaver rhoeas. Seventeen and 15 bacterial endophytes from A. mexicana and P. rhoeas, respectively, showed cellulose-degrading activity. The biochemical and molecular characterization were done for endophytic bacteria with cellulolytic activity. The consortium of cellulose-degrading endophytic bacteria from A. mexicana showed endoglucanase activity (0.462 IU/ml) and FPCase enzyme activity (0.269 IU/ml) and from P. rhoeas gave endoglucanase activity (0.439 IU/ml) and FPCase enzyme activity (0.253 IU/ml). Degraded carboxy methylcellulose and filter paper were further treated by Saccharomyces cerevisiae and bioethanol was produced. Cellulose-degrading endophytic bacteria were also tested for auxin, siderophore production, and phosphate solubilization activities. Individual cellulose-degrading endophytic bacteria with plant growth-promoting activities were used as biofertilizers, tested for plant growth-promoting activities using Basmati Pusa 1121 rice, and plant growth parameters were recorded. The degraded paper enhances the growth of rice plants. Selected bacterial endophytes and their consortia from A. mexicana and P. rhoeas were powerful cellulose degraders, which can be further employed for ethanol production and as significant biofertilizers in agriculture.
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Affiliation(s)
- Pooja Singh
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
| | - Angkita Sharma
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
| | - Sahana Mukherjee
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
| | | | - Shoma Paul Nandi
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India.
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Bakki M, Banane B, Marhane O, Esmaeel Q, Hatimi A, Barka EA, Azim K, Bouizgarne B. Phosphate solubilizing Pseudomonas and Bacillus combined with rock phosphates promoting tomato growth and reducing bacterial canker disease. Front Microbiol 2024; 15:1289466. [PMID: 38765677 PMCID: PMC11100333 DOI: 10.3389/fmicb.2024.1289466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 02/26/2024] [Indexed: 05/22/2024] Open
Abstract
Nowadays, sustainable agriculture approaches are based on the use of biofertilizers and biopesticides. Tomato (Solanum lycopersicum L.) rhizosphere could provide rhizobacteria with biofertilizing and biopesticide properties. In this study, bacteria from the rhizosphere of tomato were evaluated in vitro for plant growth promotion (PGP) properties. Five Pseudomonas isolates (PsT-04c, PsT-94s, PsT-116, PsT-124, and PsT-130) and one Bacillus isolate (BaT-68s), with the highest ability to solubilize tricalcium phosphate (TCP) were selected for further molecular identification and characterization. Isolates showed phosphate solubilization up to 195.42 μg mL-1. All isolates showed phosphate solubilization by organic acid production. The six isolates improved seed germination and showed effective root colonization when tomato seeds were coated with isolates at 106 cfu g-1 in axenic soil conditions. Furthermore, the selected isolates were tested for beneficial effects on tomato growth and nutrient status in greenhouse experiments with natural rock phosphate (RP). The results showed that inoculated tomato plants in the presence of RP have a higher shoot and root lengths and weights compared with the control. After 60 days, significant increases in plant Ca, Na, P, protein, and sugar contents were also observed in inoculated seedlings. In addition, inoculated tomato seedlings showed an increase in foliar chlorophyll a and b and total chlorophyll, while no significant changes were observed in chlorophyll fluorescence. In greenhouse, two Pseudomonas isolates, PsT-04c and PsT-130, showed ability to trigger induced systemic resistance in inoculated tomato seedlings when subsequently challenged by Clavibacter michiganensis subsp. michiganensis, the causal agent of tomato bacterial canker. High protection rate (75%) was concomitant to an increase in the resistance indicators: total soluble phenolic compounds, phenylalanine-ammonia lyase, and H2O2. The results strongly demonstrated the effectiveness of phosphate-solubilizing bacteria adapted to rhizosphere as biofertilizers for tomato crops and biopesticides by inducing systemic resistance to the causal agent of tomato bacterial canker disease.
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Affiliation(s)
- Mohamed Bakki
- Laboratory of Plant Biotechnology “Biotechnologies Végétales”, Faculty of Sciences, University Ibn Zohr (UIZ), Agadir, Morocco
| | - Badra Banane
- Laboratory of Plant Biotechnology “Biotechnologies Végétales”, Faculty of Sciences, University Ibn Zohr (UIZ), Agadir, Morocco
| | - Omaima Marhane
- Laboratory of Plant Biotechnology “Biotechnologies Végétales”, Faculty of Sciences, University Ibn Zohr (UIZ), Agadir, Morocco
| | - Qassim Esmaeel
- Unité de Recherche Résistance Induite et Bio Protection des Plantes, EA 4707 – USC INRAe1488, UFR Sciences Exactes et Naturelles, Moulin de la Housse, University of Reims Champagne-Ardenne, Reims, France
| | - Abdelhakim Hatimi
- Laboratory of Plant Biotechnology “Biotechnologies Végétales”, Faculty of Sciences, University Ibn Zohr (UIZ), Agadir, Morocco
| | - Essaid Ait Barka
- Unité de Recherche Résistance Induite et Bio Protection des Plantes, EA 4707 – USC INRAe1488, UFR Sciences Exactes et Naturelles, Moulin de la Housse, University of Reims Champagne-Ardenne, Reims, France
| | - Khalid Azim
- Integrated Crop Production Research Unit, Regional Center of Agricultural Research of Agadir, National Institute of Agricultural Research, Rabat, Morocco
| | - Brahim Bouizgarne
- Laboratory of Plant Biotechnology “Biotechnologies Végétales”, Faculty of Sciences, University Ibn Zohr (UIZ), Agadir, Morocco
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Jin T, Ren J, Bai B, Wu W, Cao Y, Meng J, Zhang L. Effects of Klebsiella michiganensis LDS17 on Codonopsis pilosula growth, rhizosphere soil enzyme activities, and microflora, and genome-wide analysis of plant growth-promoting genes. Microbiol Spectr 2024; 12:e0405623. [PMID: 38563743 PMCID: PMC11064500 DOI: 10.1128/spectrum.04056-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 03/04/2024] [Indexed: 04/04/2024] Open
Abstract
Codonopsis pilosula is a perennial herbaceous liana with medicinal value. It is critical to promote Codonopsis pilosula growth through effective and sustainable methods, and the use of plant growth-promoting bacteria (PGPB) is a promising candidate. In this study, we isolated a PGPB, Klebsiella michiganensis LDS17, that produced a highly active 1-aminocyclopropane-1-carboxylate deaminase from the Codonopsis pilosula rhizosphere. The strain exhibited multiple plant growth-promoting properties. The antagonistic activity of strain LDS17 against eight phytopathogenic fungi was investigated, and the results showed that strain LDS17 had obvious antagonistic effects on Rhizoctonia solani, Colletotrichum camelliae, Cytospora chrysosperma, and Phomopsis macrospore with growth inhibition rates of 54.22%, 49.41%, 48.89%, and 41.11%, respectively. Inoculation of strain LDS17 not only significantly increased the growth of Codonopsis pilosula seedlings but also increased the invertase and urease activities, the number of culturable bacteria, actinomycetes, and fungi, as well as the functional diversity of microbial communities in the rhizosphere soil of the seedlings. Heavy metal (HM) resistance tests showed that LDS17 is resistant to copper, zinc, and nickel. Whole-genome analysis of strain LDS17 revealed the genes involved in IAA production, siderophore synthesis, nitrogen fixation, P solubilization, and HM resistance. We further identified a gene (koyR) encoding a plant-responsive LuxR solo in the LDS17 genome. Klebsiella michiganensis LDS17 may therefore be useful in microbial fertilizers for Codonopsis pilosula. The identification of genes related to plant growth and HM resistance provides an important foundation for future analyses of the molecular mechanisms underlying the plant growth promotion and HM resistance of LDS17. IMPORTANCE We comprehensively evaluated the plant growth-promoting characteristics and heavy metal (HM) resistance ability of the LDS17 strain, as well as the effects of strain LDS17 inoculation on the Codonopsis pilosula seedling growth and the soil qualities in the Codonopsis pilosula rhizosphere. We conducted whole-genome analysis and identified lots of genes and gene clusters contributing to plant-beneficial functions and HM resistance, which is critical for further elucidating the plant growth-promoting mechanism of strain LDS17 and expanding its application in the development of plant growth-promoting agents used in the environment under HM stress.
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Affiliation(s)
- Tingting Jin
- Department of Life Sciences, Changzhi University, Changzhi, China
| | - Jiahong Ren
- Department of Life Sciences, Changzhi University, Changzhi, China
| | - Bianxia Bai
- Department of Life Sciences, Changzhi University, Changzhi, China
| | - Wei Wu
- Department of Life Sciences, Changzhi University, Changzhi, China
| | - Yongqing Cao
- Department of Life Sciences, Changzhi University, Changzhi, China
| | - Jing Meng
- Department of Life Sciences, Changzhi University, Changzhi, China
| | - Lihui Zhang
- Department of Life Sciences, Changzhi University, Changzhi, China
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Lin YZ, Chen QQ, Qiu YF, Xie RR, Zhang H, Zhang Y, Li JB, Han YH. Spartina alterniflora invasion altered phosphorus retention and microbial phosphate solubilization of the Minjiang estuary wetland in southeastern China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 358:120817. [PMID: 38593740 DOI: 10.1016/j.jenvman.2024.120817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 01/27/2024] [Accepted: 04/01/2024] [Indexed: 04/11/2024]
Abstract
Spartina alterniflora invasion is considered a critical event affecting sediment phosphorus (P) availability and stock. However, P retention and microbial phosphate solubilization in the sediments invaded with or without S. alterniflora have not been fully investigated. In this study, a sequential fractionation method and high-throughput sequencing were used to analyze P transformation and the underlying microbial mechanisms in the sediments of no plant (NP) zone, transition (T) zone, and plant (P) zone. Results showed that except for organic phosphate (OP), total phosphate (TP), inorganic phosphate (IP), and available phosphate (AP) all followed a significant decrease trend from the NP site to the T site, and to the P site. The vertical decrease of TP, IP, and AP was also observed with an increase in soil depth. Among the six IP fractions, Fe-P, Oc-P, and Ca10-P were the predominant forms, while the presence of S. alterniflora resulted in an obvious P depletion except for Ca8-P and Al-P. Although S. alterniflora invasion did not significantly alter the alpha diversity of phosphate-solubilizing bacteria (PSB) harboring phoD gene, several PSB belonging to p_Proteobacteria, p_Planctomycetes, and p_Cyanobacteriota showed close correlations with P speciation and IP fractions. Further correlation analysis revealed that the reduced soil pH, soil TN and soil EC, and the increased soil TOC mediated by the invasion of S. alterniflora also significantly correlated to these PSB. Overall, this study elucidates the linkage between PSB and P speciation and provides new insights into understanding P retention and microbial P transformation in the coastal sediment invaded by S. alterniflora.
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Affiliation(s)
- Yan-Zhen Lin
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Qi-Qi Chen
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Yi-Fan Qiu
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China; College of Carbon Neutral Modem Industry, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Rong-Rong Xie
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Hong Zhang
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Yong Zhang
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China
| | - Jia-Bing Li
- College of Carbon Neutral Modem Industry, Fujian Normal University, Fuzhou, 350117, Fujian, China; Fujian Key Laboratory of Pollution Control and Resource Reuse, Fuzhou, 350117, Fujian, China.
| | - Yong-He Han
- College of Environmental and Resource Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
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Zhao B, Jia X, Yu N, Murray JD, Yi K, Wang E. Microbe-dependent and independent nitrogen and phosphate acquisition and regulation in plants. THE NEW PHYTOLOGIST 2024; 242:1507-1522. [PMID: 37715479 DOI: 10.1111/nph.19263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 08/30/2023] [Indexed: 09/17/2023]
Abstract
Nitrogen (N) and phosphorus (P) are the most important macronutrients required for plant growth and development. To cope with the limited and uneven distribution of N and P in complicated soil environments, plants have evolved intricate molecular strategies to improve nutrient acquisition that involve adaptive root development, production of root exudates, and the assistance of microbes. Recently, great advances have been made in understanding the regulation of N and P uptake and utilization and how plants balance the direct uptake of nutrients from the soil with the nutrient acquisition from beneficial microbes such as arbuscular mycorrhiza. Here, we summarize the major advances in these areas and highlight plant responses to changes in nutrient availability in the external environment through local and systemic signals.
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Affiliation(s)
- Boyu Zhao
- Key Laboratory of Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610065, China
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, SIBS, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Xianqing Jia
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Nan Yu
- Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China
| | - Jeremy D Murray
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, SIBS, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Keke Yi
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Ertao Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, SIBS, Chinese Academy of Sciences, Shanghai, 200032, China
- School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China
- New Cornerstone Science Laboratory, Shenzhen, 518054, China
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Verma KK, Joshi A, Song XP, Singh S, Kumari A, Arora J, Singh SK, Solanki MK, Seth CS, Li YR. Synergistic interactions of nanoparticles and plant growth promoting rhizobacteria enhancing soil-plant systems: a multigenerational perspective. FRONTIERS IN PLANT SCIENCE 2024; 15:1376214. [PMID: 38742215 PMCID: PMC11089215 DOI: 10.3389/fpls.2024.1376214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 04/15/2024] [Indexed: 05/16/2024]
Abstract
Sustainable food security and safety are major concerns on a global scale, especially in developed nations. Adverse agroclimatic conditions affect the largest agricultural-producing areas, which reduces the production of crops. Achieving sustainable food safety is challenging because of several factors, such as soil flooding/waterlogging, ultraviolet (UV) rays, acidic/sodic soil, hazardous ions, low and high temperatures, and nutritional imbalances. Plant growth-promoting rhizobacteria (PGPR) are widely employed in in-vitro conditions because they are widely recognized as a more environmentally and sustainably friendly approach to increasing crop yield in contaminated and fertile soil. Conversely, the use of nanoparticles (NPs) as an amendment in the soil has recently been proposed as an economical way to enhance the texture of the soil and improving agricultural yields. Nowadays, various research experiments have combined or individually applied with the PGPR and NPs for balancing soil elements and crop yield in response to control and adverse situations, with the expectation that both additives might perform well together. According to several research findings, interactive applications significantly increase sustainable crop yields more than PGPR or NPs alone. The present review summarized the functional and mechanistic basis of the interactive role of PGPR and NPs. However, this article focused on the potential of the research direction to realize the possible interaction of PGPR and NPs at a large scale in the upcoming years.
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Affiliation(s)
- Krishan K. Verma
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, Guangxi, China
| | - Abhishek Joshi
- Department of Botany, Mohanlal Sukhadia University, Udaipur, Rajasthan, India
| | - Xiu-Peng Song
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, Guangxi, China
| | - Shraddha Singh
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, MH, India
- Homi Bhabha National Institute, Mumbai, MH, India
| | - Aradhna Kumari
- College of Agriculture, Jawaharlal Nehru Krishi Vishwa Vidyalaya, Ganj Basoda, Vidisha, Madhya Pradesh, India
| | - Jaya Arora
- Department of Botany, Mohanlal Sukhadia University, Udaipur, Rajasthan, India
| | - Santosh Kumar Singh
- Dr. Rajendra Prasad Central Agricultural University, Pusa, Samastipur, Bihar, India
| | - Manoj Kumar Solanki
- Department of Life Sciences and Biological Sciences, IES University, Bhopal, Madhya Pradesh, India
- Plant Cytogenetics and Molecular Biology Group, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland
| | | | - Yang-Rui Li
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, Guangxi, China
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Agbodjato NA, Babalola OO. Promoting sustainable agriculture by exploiting plant growth-promoting rhizobacteria (PGPR) to improve maize and cowpea crops. PeerJ 2024; 12:e16836. [PMID: 38638155 PMCID: PMC11025545 DOI: 10.7717/peerj.16836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 01/04/2024] [Indexed: 04/20/2024] Open
Abstract
Maize and cowpea are among the staple foods most consumed by most of the African population, and are of significant importance in food security, crop diversification, biodiversity preservation, and livelihoods. In order to satisfy the growing demand for agricultural products, fertilizers and pesticides have been extensively used to increase yields and protect plants against pathogens. However, the excessive use of these chemicals has harmful consequences on the environment and also on public health. These include soil acidification, loss of biodiversity, groundwater pollution, reduced soil fertility, contamination of crops by heavy metals, etc. Therefore, essential to find alternatives to promote sustainable agriculture and ensure the food and well-being of the people. Among these alternatives, agricultural techniques that offer sustainable, environmentally friendly solutions that reduce or eliminate the excessive use of agricultural inputs are increasingly attracting the attention of researchers. One such alternative is the use of beneficial soil microorganisms such as plant growth-promoting rhizobacteria (PGPR). PGPR provides a variety of ecological services and can play an essential role as crop yield enhancers and biological control agents. They can promote root development in plants, increasing their capacity to absorb water and nutrients from the soil, increase stress tolerance, reduce disease and promote root development. Previous research has highlighted the benefits of using PGPRs to increase agricultural productivity. A thorough understanding of the mechanisms of action of PGPRs and their exploitation as biofertilizers would present a promising prospect for increasing agricultural production, particularly in maize and cowpea, and for ensuring sustainable and prosperous agriculture, while contributing to food security and reducing the impact of chemical fertilizers and pesticides on the environment. Looking ahead, PGPR research should continue to deepen our understanding of these microorganisms and their impact on crops, with a view to constantly improving sustainable agricultural practices. On the other hand, farmers and agricultural industry players need to be made aware of the benefits of PGPRs and encouraged to adopt them to promote sustainable agricultural practices.
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Affiliation(s)
- Nadège Adoukè Agbodjato
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North West University, Mafikeng, North West, South Africa
- Laboratoire de Biologie et de Typage Moléculaire en Microbiologie (LBTMM), Département de Biochimie et de Biologie Cellulaire, Université d’Abomey-Calavi, Calavi, Benin
| | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North West University, Mafikeng, North West, South Africa
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Wang S, Yuan X, Li T, Yang J, Zhao L, Yuan D, Guo Z, Liu C, Duan C. Changes in soil microbe-mediated carbon, nitrogen and phosphorus cycling during spontaneous succession in abandoned PbZn mining areas. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 920:171018. [PMID: 38378054 DOI: 10.1016/j.scitotenv.2024.171018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 02/14/2024] [Accepted: 02/14/2024] [Indexed: 02/22/2024]
Abstract
The mechanism through which soil microorganisms mediate carbon and nutrient cycling during mine wasteland restoration remained unknown. Using soil metagenome sequencing, we investigated the dynamic changes in soil microbial potential metabolic functions during the transition from biological soil crusts (BSC) to mixed broad-conifer forest (MBF) in a typical PbZn mine. The results showed soil microorganisms favored carbon sequestration through anaerobic and microaerobic pathways, predominantly using efficient, low-energy pathways during succession. Genes governing carbon degradation and aerobic respiration increased by 19.56 % and 24.79 %, respectively, reflecting change toward more efficient and intensive soil carbon utilization in late succession. Nitrogen-cycling genes mediated by soil microorganisms met their maximum influence during early succession (sparse grassland, SGL), leading to a respective increase of 75.29 % and 76.81 % in the net potential nitrification rate and total nitrogen content. Mantel and correlation analyses indicated that TOC, TN, Zn and Cd contents were the main factors affecting the soil carbon and phosphorus cycles. Soil AP content emerged as the primary influencer of genes associated with the nitrogen cycle. These results shed light on the dynamic shifts in microbial metabolic activities during succession, providing a genetic insight into biogeochemical cycling mechanisms and underscoring crucial factors influencing soil biogeochemical processes in mining regions.
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Affiliation(s)
- Sichen Wang
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Xinqi Yuan
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Ting Li
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Jie Yang
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Luoqi Zhao
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Duanyang Yuan
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Zhaolai Guo
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Chang'e Liu
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China
| | - Changqun Duan
- Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, School of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; Yunnan International Joint Research Center of Plateau Lake Ecological Restoration and Watershed Management, Yunnan University, Kunming 650091, China.
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Konwar K, Boruah H, Gogoi R, Boruah A, Borgohain A, Baruah M, Gogoi SP, Karak T, Saikia J. Broad-spectrum pH functional chitosan-phosphatase beads for the generation of plant-available phosphorus: utilizing the insoluble P pool. Front Chem 2024; 12:1359191. [PMID: 38633986 PMCID: PMC11021595 DOI: 10.3389/fchem.2024.1359191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 03/06/2024] [Indexed: 04/19/2024] Open
Abstract
Utilization of organic phosphates and insoluble phosphates for the gradual generation of plant-available phosphorus (P) is the only sustainable solution for P fertilization. Enzymatic conversions are one of the best sustainable routes for releasing P to soil. Phosphatase enzyme aids in solubilizing organic and insoluble phosphates to plant-available P. We herein report the preparation of highly functional chitosan beads co-immobilized with acid phosphatase and alkaline phosphatase enzymes via a glutaraldehyde linkage. The dual enzyme co-immobilized chitosan beads were characterized using Fourier-transform infrared (FTIR), thermogravimetric (TGA), and scanning electron microscopy-energy dispersive x-ray (SEM-EDX) analyses to confirm the immobilization. The co-immobilized system was found to be active for a broader pH range of ∼4-10 than the individually bound enzymes and mixed soluble enzymes. The bound matrix exhibited pH optima at 6 and 9, respectively, for acid and alkaline phosphatase and a temperature optimum at 50°C. The phosphate-solubilizing abilities of the chitosan-enzyme derivatives were examined using insoluble tri-calcium phosphate (TCP) for wide pH conditions of 5.5, 7, and 8.5 up to 25 days. The liberation of phosphate was highest (27.20 mg/mL) at pH 5.5 after the defined period. The residual soil phosphatase activity was also monitored after 7 days of incubation with CBE for three different soils of pH ∼5.5, 7, and 8.5. The residual phosphatase activity increased for all the soils after applying the CBE. The germination index of the Oryza sativa (rice) plant was studied using different pH buffer media upon the application of the CBE in the presence of tri-calcium phosphate as a phosphate source. Overall, the dual-enzyme co-immobilized chitosan beads were highly effective over a wide pH range for generating plant-available phosphates from insoluble phosphates. The chitosan-enzyme derivative holds the potential to be used for sustainable phosphorus fertilization with different insoluble and organic phosphorus sources.
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Affiliation(s)
- Kasturika Konwar
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
| | - Himanku Boruah
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
| | - Rimjim Gogoi
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
| | - Anudhriti Boruah
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
| | - Arup Borgohain
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
| | - Madhusmita Baruah
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
| | | | - Tanmoy Karak
- Department of Soil Science, School of Agricultural Sciences, Nagaland University, Medziphema Campus, Medziphema, Nagaland, India
| | - Jiban Saikia
- Department of Chemistry, Dibrugarh University, Dibrugarh, Assam, India
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Liang JL, Feng SW, Lu JL, Wang XN, Li FL, Guo YQ, Liu SY, Zhuang YY, Zhong SJ, Zheng J, Wen P, Yi X, Jia P, Liao B, Shu WS, Li JT. Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages. Nat Commun 2024; 15:2827. [PMID: 38565528 PMCID: PMC10987575 DOI: 10.1038/s41467-024-47214-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 03/22/2024] [Indexed: 04/04/2024] Open
Abstract
Phosphorus (P) limitation of ecosystem processes is widespread in terrestrial habitats. While a few auxiliary metabolic genes (AMGs) in bacteriophages from aquatic habitats are reported to have the potential to enhance P-acquisition ability of their hosts, little is known about the diversity and potential ecological function of P-acquisition genes encoded by terrestrial bacteriophages. Here, we analyze 333 soil metagenomes from five terrestrial habitat types across China and identify 75 viral operational taxonomic units (vOTUs) that encode 105 P-acquisition AMGs. These AMGs span 17 distinct functional genes involved in four primary processes of microbial P-acquisition. Among them, over 60% (11/17) have not been reported previously. We experimentally verify in-vitro enzymatic activities of two pyrophosphatases and one alkaline phosphatase encoded by P-acquisition vOTUs. Thirty-six percent of the 75 P-acquisition vOTUs are detectable in a published global topsoil metagenome dataset. Further analyses reveal that, under certain circumstances, the identified P-acquisition AMGs have a greater influence on soil P availability and are more dominant in soil metatranscriptomes than their corresponding bacterial genes. Overall, our results reinforce the necessity of incorporating viral contributions into biogeochemical P cycling.
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Affiliation(s)
- Jie-Liang Liang
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Shi-Wei Feng
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Jing-Li Lu
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Xiao-Nan Wang
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Feng-Lin Li
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Yu-Qian Guo
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Shen-Yan Liu
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Yuan-Yue Zhuang
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Sheng-Ji Zhong
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Jin Zheng
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Ping Wen
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Xinzhu Yi
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Pu Jia
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Bin Liao
- School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, PR China
| | - Wen-Sheng Shu
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Jin-Tian Li
- Institute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China.
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Joseph J, Ray JG. A critical review of soil algae as a crucial soil biological component of high ecological and economic significance. JOURNAL OF PHYCOLOGY 2024; 60:229-253. [PMID: 38502571 DOI: 10.1111/jpy.13444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 11/14/2023] [Accepted: 01/08/2024] [Indexed: 03/21/2024]
Abstract
Aero-terrestrial algae are ecologically and economically valuable bioresources contributing to carbon sequestration, sustenance of soil health, and fertility. Compared to aquatic algae, the literature on subaerial algae is minimal, including studies of distinctive habitats such as forest soils, agricultural fields, deserts, polar regions, specific subaerial zones, artificial structures, and tropical soils. The primary goal here was to identify the gaps and scope of research on such algae. Accordingly, the literature was analyzed per sub-themes, such as the "nature of current research data on terrestrial algae," "methodological approaches," "diversity," "environmental relationships," "ecological roles," and "economic significance." The review showed there is a high diversity of algae in soils, especially members belonging to the Cyanophyta (Cyanobacteria) and Chlorophyta. Algal distributions in terrestrial environments depend on the microhabitat conditions, and many species of soil algae are sensitive to specific soil conditions. The ecological significance of soil algae includes primary production, the release of biochemical stimulants and plant growth promoters into soils, nitrogen fixation, solubilization of minerals, and the enhancement and maintenance of soil fertility. Since aero-terrestrial habitats are generally stressed environments, algae of such environments can be rich in rare metabolites and natural products. For example, epilithic soil algae use wet adhesive molecules to fix them firmly on the substratum. Exploring the ecological roles and economic utility of soil and other subaerial algae could be helpful for the development of algae-based industries and for achieving sustainable soil management.
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Affiliation(s)
- Jebin Joseph
- Department of Botany, St Berchmans College, Changanacherry, Kerala, India
- Laboratory of Ecology and Plant Science, School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, India
| | - Joseph George Ray
- School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, India
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Ortiz J, Dias N, Alvarado R, Soto J, Sanhueza T, Rabert C, Jorquera M, Arriagada C. N- acyl homoserine lactones (AHLs) type signal molecules produced by rhizobacteria associated with plants that growing in a metal(oids) contaminated soil: A catalyst for plant growth. Microbiol Res 2024; 281:127606. [PMID: 38277718 DOI: 10.1016/j.micres.2024.127606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 11/23/2023] [Accepted: 01/08/2024] [Indexed: 01/28/2024]
Abstract
The present study explores the potential of rhizobacteria isolated from Baccharis linearis and Solidago chilensis in metal(loid)-contaminated soil for producing N-acyl-homoserine lactones (AHLs)-type signal molecules and promoting plant growth. A total of 42 strains were isolated, four demonstrating the production of AHL-type signal molecules. Based on 16S rRNA gene sequencing analyses and MALDI-TOF analyses, these four isolates were identified as belonging to the Pseudomonas genus, specifically P. brassicacearum, P. frederickberguensis, P. koreensis, and P. orientalis. The four AHL-producing strains were evaluated for metal(loid)s tolerance, their plant growth promotion traits, AHL quantification, and their impact on in vitro Lactuca sativa plant growth. The study found that four strains exhibited high tolerance to metal(loid)s, particularly As, Cu, and Zn. Additionally, plant growth-promoting traits were detected in AHL-producing bacteria, such as siderophore production, ammonia production, ACC deaminase activity, and P solubilization. Notably, AHL production varied among strains isolated from B. linearis, where C7-HSL and C9-HSL signal molecules were detected, and S. chilensis, where only C7-HSL signal molecules were observed. In the presence of copper, the production of C7-HSL and C9-HSL significantly decreased in B. linearis isolates, while in S. chilensis isolates, C7-HSL production was inhibited. Further, when these strains were inoculated on lettuce seeds and in vitro plants, a significant increase in germination and plant growth was observed. Mainly, the inoculation of P. brassicacearum and P. frederickberguensis led to extensive root hair development, significantly increasing length and root dry weight. Our results demonstrate that rhizospheric strains produce AHL molecules and stimulate plant growth, primarily through root development. However, the presence of copper reduces the production of these molecules, potentially affecting the root development of non-metalloid tolerant plants such as S. chilensis, which would explain its low population in this hostile environment.
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Affiliation(s)
- Javier Ortiz
- Laboratorio de Biorremediación, Facultad de Ciencias Agropecuarias y Mediambiente, Universidad de La Frontera, Temuco, Chile
| | - Nathalia Dias
- Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile
| | - Roxana Alvarado
- Laboratorio de Biorremediación, Facultad de Ciencias Agropecuarias y Mediambiente, Universidad de La Frontera, Temuco, Chile
| | - Javiera Soto
- Laboratorio de Biorremediación, Facultad de Ciencias Agropecuarias y Mediambiente, Universidad de La Frontera, Temuco, Chile
| | - Tedy Sanhueza
- Laboratorio de Biorremediación, Facultad de Ciencias Agropecuarias y Mediambiente, Universidad de La Frontera, Temuco, Chile
| | - Claudia Rabert
- Instituto de Ciencias Biomédicas, Facultad de Ciencias de la Salud, Universidad Autónoma de Chile, Temuco, Chile
| | - Milko Jorquera
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile
| | - César Arriagada
- Laboratorio de Biorremediación, Facultad de Ciencias Agropecuarias y Mediambiente, Universidad de La Frontera, Temuco, Chile.
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Wang Q, Yu C, Kong C, Zeng H, Yu W, Wu J. Genomics analysis of three phosphorus-dissolving bacteria isolated from Torreya grandis soil. Int Microbiol 2024; 27:361-376. [PMID: 37453003 DOI: 10.1007/s10123-023-00393-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 06/21/2023] [Accepted: 06/28/2023] [Indexed: 07/18/2023]
Abstract
With the increasingly serious problem of phosphorus deficiency in the subtropical zone, chemical fertilizers are widely used. But it pollutes the environment. Phosphorus-solubilizing microorganisms (PSMs) are referred to as a new solution to this problem. We explored the phosphorus-dissolving characteristics of PSB strains isolated from the rhizosphere soil of Torreya grandis to provide a theoretical basis for selecting the strain for managing phosphorus deficiency in subtropical soils and also provides a more sufficient theoretical basis for the utilization of PSMs. From 84 strains, three strains exhibiting high phosphorus solubility and strong IAA producing capacity were selected through a series of experiments. The phosphate-solubilizing capacity of the three selected strains W1, W74, and W83 were 339.78 mg/L, 332.57 mg/L, and 358.61 mg/L, respectively. Furthermore, W1 showed the strongest IAA secreting capacity of 8.62 mg/L, followed by W74 (7.58 mg/L), and W83 (7.59 mg/L). Determination by metabolites, it was observed that these three strains dissolved phosphorus by secreting a large amount of lactic acid, aromatic acid, and succinic acid. The genome of these PSBs were sequenced and annotated in this study. Our results revealed that PSB primarily promotes their metabolic pathway, especially carbon metabolism, to secrete plenty organic acids for dissolving insoluble phosphorus.
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Affiliation(s)
- Qi Wang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Chenliang Yu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Congcong Kong
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Hao Zeng
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Weiwu Yu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China.
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China.
- NFGA Engineering Research Center for Torreya Grandis 'Merrillii', Zhejiang A&F University, Hangzhou, 311300, China.
| | - Jiasheng Wu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Hangzhou, China.
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China.
- NFGA Engineering Research Center for Torreya Grandis 'Merrillii', Zhejiang A&F University, Hangzhou, 311300, China.
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Pang F, Li Q, Solanki MK, Wang Z, Xing YX, Dong DF. Soil phosphorus transformation and plant uptake driven by phosphate-solubilizing microorganisms. Front Microbiol 2024; 15:1383813. [PMID: 38601943 PMCID: PMC11005474 DOI: 10.3389/fmicb.2024.1383813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 03/14/2024] [Indexed: 04/12/2024] Open
Abstract
Phosphorus (P) is an important nutrient for plants, and a lack of available P greatly limits plant growth and development. Phosphate-solubilizing microorganisms (PSMs) significantly enhance the ability of plants to absorb and utilize P, which is important for improving plant nutrient turnover and yield. This article summarizes and analyzes how PSMs promote the absorption and utilization of P nutrients by plants from four perspectives: the types and functions of PSMs, phosphate-solubilizing mechanisms, main functional genes, and the impact of complex inoculation of PSMs on plant P acquisition. This article reviews the physiological and molecular mechanisms of phosphorus solubilization and growth promotion by PSMs, with a focus on analyzing the impact of PSMs on soil microbial communities and its interaction with root exudates. In order to better understand the ability of PSMs and their role in soil P transformation and to provide prospects for research on PSMs promoting plant P absorption. PSMs mainly activate insoluble P through the secretion of organic acids, phosphatase production, and mycorrhizal symbiosis, mycorrhizal symbiosis indirectly activates P via carbon exchange. PSMs can secrete organic acids and produce phosphatase, which plays a crucial role in soil P cycling, and related genes are involved in regulating the P-solubilization ability. This article reviews the mechanisms by which microorganisms promote plant uptake of soil P, which is of great significance for a deeper understanding of PSM-mediated soil P cycling, plant P uptake and utilization, and for improving the efficiency of P utilization in agriculture.
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Affiliation(s)
- Fei Pang
- College of Agriculture, Guangxi University, Nanning, China
| | - Qing Li
- College of Agriculture, Guangxi University, Nanning, China
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Smart Agricultural College, Yulin Normal University, Yulin, China
| | - Manoj Kumar Solanki
- Department of Life Sciences and Biological Sciences, IES University, Bhopal, India
| | - Zhen Wang
- Guangxi Key Laboratory of Agricultural Resources Chemistry and Biotechnology, Smart Agricultural College, Yulin Normal University, Yulin, China
| | - Yong-Xiu Xing
- College of Agriculture, Guangxi University, Nanning, China
| | - Deng-Feng Dong
- College of Agriculture, Guangxi University, Nanning, China
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Hu X, Ma W, Pasang L, Li J, Chen H. Gel-Embedded Biochar and Hydroxyapatite Composite for the Improvement of Saline-Alkali Soil and Plant Growth Promotion. Gels 2024; 10:222. [PMID: 38667641 PMCID: PMC11048822 DOI: 10.3390/gels10040222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 03/15/2024] [Accepted: 03/17/2024] [Indexed: 04/28/2024] Open
Abstract
Soil amendments play a crucial role in modern agriculture, as they effectively enhance the planting environment. This study innovatively proposes the use of gel as a crosslinking agent to embed biochar and hydroxyapatite (HAP), thereby preparing a novel soil amendment. Furthermore, this study investigates the soil improvement effects of this amendment as well as its influence on plant growth. This study employed a hydrothermal method to combine corn stalk (CB) or sludge (SB) biochar with HAP at different ratios (0-20%). Subsequently, sodium alginate gel (SA) was utilized to encapsulate the biochar and minerals, successfully forming a ternary composite gel material (corn stalk biochar/sludge biochar-sodium alginate gel-hydroxyapatite: CB/SB-SA-HAP). Finally, the practical effectiveness of this amendment was verified through potted soil experiments. The results indicate that the CB/SB-SA-HAP composite materials exhibited a micrometre-scale spherical structure with well-developed micropores and possess the functional groups of CB/SB, SA, and HAP, along with unique mineral properties. Through pot experiments, it was verified that the composite material effectively enhances multiple soil properties. After 21 days of cultivation, the soil pH values stabilized within the neutral range (pH = 7 ± 0.3) across all treatment groups. Except for the CB0 (CB:HAP = 1:0) and CB2.0 (CB:HAP = 1:2) treatments, the remaining treatments significantly reduced the soil EC values by 3.27% to 47.92%. All treatments significantly increased the contents of alkali-hydrolysable nitrogen (AHN) (34.89~57.91%), available phosphorus (AP) (35.93~56.55%), and available potassium (AK) (36.41~56.80%) in the soil. In comparison, although the SB treatment was more effective in regulating the pH and electrical conductivity (EC) of saline-alkali soil than the CB treatment, it was less effective in promoting plant growth in the short term. Through correlation analysis and redundancy analysis, a significant positive correlation was found between soil pH and ryegrass germination rate and plant height, particularly with the most pronounced impact on soil pH observed in the CB1.0 and SB0 (SB:HAP = 1:0) treatments. This study underscores the potential of CB/SB-SA-HAP composite materials in soil improvement and plant growth promotion, providing valuable insights for soil remediation, enhancement, and plant cultivation advancements in the agricultural sector.
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Affiliation(s)
| | | | | | - Jiansheng Li
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, China; (X.H.); (W.M.); (L.P.)
| | - Haoming Chen
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, China; (X.H.); (W.M.); (L.P.)
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46
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Ding S, Li J, Wang Y, He S, Xie H, Fu H, Feng Y, Shaheen SM, Rinklebe J, Xue L. Manure derived hydrochar reduced phosphorus loss risk via an alteration of phosphorus fractions and diversified microbial community in rice paddy soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 918:170582. [PMID: 38309349 DOI: 10.1016/j.scitotenv.2024.170582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 01/16/2024] [Accepted: 01/29/2024] [Indexed: 02/05/2024]
Abstract
Phosphorus (P) loss caused by the irrational use of manure organic fertilizer has become a worldwide environmental problem, which has caused a potential threat to water safety and intensified agricultural non-point source pollution. Hydrothermal carbonization is method with a low-energy consumption and high efficiency to deal with environmental problems. Application of pig manure-derived hydrochar (PMH) to soil exhibited potential of sustainable development compared with the pristine pig manure (PM). However, the effects of PMH on the distribution of P among the fractions/forms and the interaction between microorganisms and P forms and its relevance to the potential loss of P in paddy fields has not been clarified. Therefore, in this study, a soil column experiment was conducted using the untreated soil (control), and the PM, PMH1 (PMH derived at 180 °C), and PMH2 (PMH derived at 260 °C) treated soils (at the dose of 0.05 %) and rice was cultivated to investigate the effects of PM and PMH on the P fractions, mobilization, ad potential loss via the induced changes on soil microbial community after a complete growing season of rice. The trend of P utilization was evaluated by P speciation via continuous extraction and 31P NMR. The addition of PMH reduced the proportion of residual P in soil by 23.8-26.3 %, and increased the proportion of HCl-P and orthophosphate by 116.2-158.6 % and 6.1-6.8 % compared to PM. The abundance of gcd gene developed after the application of PMH2, which enhanced the mobile forms of soil P utilization via secreting gluconic acid. The network diagram analysis concluded that the changes in various P forms were mainly related to Proteobacteria, Bacteroides, Firmicutes and Acidobacteria. The results illustrated that PMH mitigate the potential risk of P loss more than PM by altering P fractions and affecting soil microbial community.
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Affiliation(s)
- Shudong Ding
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, National Agricultural Experiment Station for Agricultural Environment, (Liu He), Ministry of Agriculture and Rural Affairs; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Jing Li
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, National Agricultural Experiment Station for Agricultural Environment, (Liu He), Ministry of Agriculture and Rural Affairs; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Yu Wang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Shiying He
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, National Agricultural Experiment Station for Agricultural Environment, (Liu He), Ministry of Agriculture and Rural Affairs; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Huifang Xie
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, China
| | - Haibin Fu
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, National Agricultural Experiment Station for Agricultural Environment, (Liu He), Ministry of Agriculture and Rural Affairs; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, China
| | - Yanfang Feng
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, National Agricultural Experiment Station for Agricultural Environment, (Liu He), Ministry of Agriculture and Rural Affairs; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China.
| | - Sabry M Shaheen
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water- and Waste-Management, Laboratory of Soil- and Groundwater-Management, Pauluskirchstraße 7, 42285 Wuppertal, Germany; King Abdulaziz University, Faculty of Meteorology, Environment, and Arid Land Agriculture, Department of Arid Land Agriculture, 21589 Jeddah, Saudi Arabia; University of Kafrelsheikh, Faculty of Agriculture, Department of Soil and Water Sciences, 33516 Kafr El-Sheikh, Egypt
| | - Jörg Rinklebe
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water- and Waste-Management, Laboratory of Soil- and Groundwater-Management, Pauluskirchstraße 7, 42285 Wuppertal, Germany
| | - Lihong Xue
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, National Agricultural Experiment Station for Agricultural Environment, (Liu He), Ministry of Agriculture and Rural Affairs; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
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Nimsi KA, Arya H, Manjusha K, Kathiresan K. Multifarious plant growth-promoting traits of mangrove yeasts: growth enhancement in mangrove seedlings (Rhizophora mucronata) for conservation. Arch Microbiol 2024; 206:192. [PMID: 38522061 DOI: 10.1007/s00203-024-03913-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 02/15/2024] [Accepted: 02/26/2024] [Indexed: 03/25/2024]
Abstract
Plant Growth-Promoting Yeasts (PGPY) have garnered significant attention in recent years; however, research on PGPY from mangroves remains a largely unexplored frontier. This study, therefore, focused on exploring the multifaceted plant growth-promoting (PGP) capabilities of yeasts isolated from mangroves of Puthuvype and Kumbalam. The present work found that manglicolous yeasts exhibited diverse hydrolytic properties, with the predominance of lipolytic activity, in addition to other traits such as phosphate solubilization, and production of indole acetic acid, siderophore, ammonia, catalase, nitrate, and hydrogen cyanide. After screening for 15 PGP traits, three strains P 9, PV 23, and KV 35 were selected as the most potent ones. These strains also exhibited antagonistic activity against fungal phytopathogens and demonstrated resilience to abiotic stresses, making them not only promising biocontrol agents but also suited for field application. The potent strains P 9, PV 23, and KV 35 were molecularly identified as Candida tropicalis, Debaryomyces hansenii, and Aureobasidium melanogenum, respectively. The potential of these strains in enhancing the growth performance of mangrove seedlings of Rhizophora mucronata, was demonstrated using the pot-experiment. The results suggested that the consortium of three potent strains (P 9, PV 23, and KV 35) was more effective in increasing the number of shoot branches (89.2%), plant weight (87.5%), root length (83.3%), shoot height (57.9%) and total leaf area (35.1%) than the control seedlings. The findings of this study underscore the significant potential of manglicolous yeasts in contributing to mangrove conservation and restoration efforts, offering a comprehensive understanding of their diverse plant growth-promoting mechanisms and highlighting their valuable role in sustainable ecosystem management.
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Affiliation(s)
- K A Nimsi
- Faculty of Ocean Science and Technology, Kerala University of Fisheries and Ocean Studies, Panangad, Kerala, 682506, India
| | - H Arya
- Faculty of Ocean Science and Technology, Kerala University of Fisheries and Ocean Studies, Panangad, Kerala, 682506, India
| | - K Manjusha
- Faculty of Ocean Science and Technology, Kerala University of Fisheries and Ocean Studies, Panangad, Kerala, 682506, India.
| | - K Kathiresan
- Faculty of Marine Sciences, Center for Advanced Study in Marine Biology, Annamalai University, Chidambaram, Tamil Nadu, 608502, India
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48
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Rathod K, Rana S, Dhandhukia P, Thakker JN. From Sea to Soil: Marine Bacillus subtilis enhancing chickpea production through in vitro and in vivo plant growth promoting traits. Braz J Microbiol 2024; 55:823-836. [PMID: 38191971 PMCID: PMC10920480 DOI: 10.1007/s42770-023-01238-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/26/2023] [Indexed: 01/10/2024] Open
Abstract
Various strategies are used to augment agricultural output in response to the escalating food requirements stemming from population expansion. Out of various strategies, the use of plant growth-promoting bacteria (PGPB) has shown promise as a viable technique in implementing new agricultural practices. The study of PGPB derived from rhizospheric soil is extensive, but there is a need for more exploration of marine microorganisms. The present research aims to investigate the potential of marine microorganisms as promoters of plant growth. The marine microbe Bacillus subtilis used in current study has been discovered as a possible plant growth-promoting bacterium (PGPB) as it showed ability to produce ammonia, solubilize potassium and phosphate, and was able to colonize chickpea roots. Bacillus subtilis exhibited a 40% augmentation in germination. A talc-based bio-formulation was prepared using Bacillus subtilis, and pot experiment was done under two conditions: control (T1) and Bacillus treated (T2). In the pot experiment, the plant weight with Bacillus treatment increased by 14.17%, while the plant height increased by 13.71% as compared to control. It also enhanced the chlorophyll content of chickpea and had a beneficial influence on stress indicators. Furthermore, it was noted that it enhanced the levels of nitrogen, potassium, and phosphate in the soil improving soil quality. The findings showed that B. subtilis functioned as a plant growth-promoting bacteria (PGPB) to enhance the overall development of chickpea.
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Affiliation(s)
- Khushbu Rathod
- Department of Biological Sciences, P D Patel Institute of Applied Sciences, Charotar University of Science and Technology, Gujarat, India
| | - Shruti Rana
- Department of Biological Sciences, P D Patel Institute of Applied Sciences, Charotar University of Science and Technology, Gujarat, India
| | - Pinakin Dhandhukia
- Department of Microbiology, School of Science and Technology, Vanita Vishram Women's University, Surat, Gujarat, India
| | - Janki N Thakker
- Department of Biological Sciences, P D Patel Institute of Applied Sciences, Charotar University of Science and Technology, Gujarat, India.
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49
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Daroodi Z, Taheri P. The genus Acrophialophora: History, phylogeny, morphology, beneficial effects and pathogenicity. Fungal Genet Biol 2024; 171:103875. [PMID: 38367800 DOI: 10.1016/j.fgb.2024.103875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Revised: 01/21/2024] [Accepted: 02/12/2024] [Indexed: 02/19/2024]
Abstract
The genus Acrophialophora is a thermotolerant fungus, which is widely distributed in temperate and tropical zones. This fungus is classified in Ascomycota and belongs to the Chaetomiaceae family and the genera of Parathielavia, Pseudothielavia and Hyalosphaerella are closely related to Acrophialophora. For this genus have been reported 28 species so far, which two species of Acrophialophora jodhpurensis and Acrophialophora teleoafricana produce only sexual phase and other species produce asexual form. Therefore, producing both sexual and asexual forms were not reported by any species. Many applications were reported by some species in agriculture, pharmacy and industry. Production of enzymes, antimicrobial metabolites and plant growth-promoting factors were reported by some species. The species of A. nainiana is used in the industries of textile, fruit juice, pulp and paper due to extracellular enzyme production. Also, other species produce extracellular enzymes that can be used in various industries. The species Acrophialophora are used in the composting industry due to the production of various enzymes and to be thermotolerant. In addition, some species were isolated from hostile environmental conditions. Therefore has been suggested that it can be used for mycoremediation. Also, antimicrobial metabolites of Acrophialophora have been reported to be effective against human and plant pathogens. In contrast to the beneficial effects described, the Acrophialophora pathogenicity has been rarely reported. Two species A. fusispora and A. levis are opportunistic fungi and have been reported as pathogens in humans, animals and plants. Currently, the development and applications of Acrophialophora species have increased more than past. To our knowledge, there is no report with comprehensive information on the species of Acrophialophora, which include their disadvantage and beneficial effects, particularly in agriculture. Therefore, it seems necessary to pay more in-depth attention to the application of this genus as a beneficial fungus in agriculture, pharmaceutical and industry. This review is focused on the history, phylogeny, morphology, valuable roles of Acrophialophora and pathogenicity.
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Affiliation(s)
- Zoha Daroodi
- Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Parissa Taheri
- Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran.
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50
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Bini D, Mattos BB, Figueiredo JEF, Dos Santos FC, Marriel IE, Dos Santos CA, de Oliveira-Paiva CA. Parameter evaluation for developing phosphate-solubilizing Bacillus inoculants. Braz J Microbiol 2024; 55:737-748. [PMID: 38008804 PMCID: PMC10920567 DOI: 10.1007/s42770-023-01182-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 11/11/2023] [Indexed: 11/28/2023] Open
Abstract
Bacterial inoculants have been used in agriculture to improve plant performance. However, laboratory and field requirements must be completed before a candidate can be employed as an inoculant. Therefore, this study aimed to evaluate the parameters for inoculant formulation and the potential of Bacillus subtilis (B70) and B. pumilus (B32) to improve phosphorus availability in maize (Zea mays L.) crops. In vitro experiments assessed the bacterial ability to solubilize and mineralize phosphate, their adherence to roots, and shelf life in cassava starch (CS), carboxymethyl cellulose (CMC), peat, and activated charcoal (AC) stored at 4 °C and room temperature for 6 months. A field experiment evaluated the effectiveness of strains to increase the P availability to plants growing with rock phosphate (RP) and a mixture of RP and triple superphosphate (TS) and their contribution to improving maize yield and P accumulation in grains. The B70 was outstanding in solubilizing RP and phytate mineralization and more stable in carriers and storage conditions than B32. However, root adherence was more noticeable in B32. Among carriers, AC was the most effective for preserving viable cell counts, closely similar to those of the initial inoculum of both strains. Maize productivity using the mixture RPTS was similar for B70 and B32. The best combination was B70 with RP, which improved the maize yield (6532 kg ha-1) and P accumulation in grains (15.95 kg ha-1). Our results indicated that the inoculant formulation with AC carrier and B70 is a feasible strategy for improving phosphorus mobilization in the soil and maize productivity.
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Affiliation(s)
- Daniel Bini
- Embrapa Milho E Sorgo, Sete Lagoas, MG, 35701-970, Brazil
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