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Gupta RK, Vashisht M, Naresh RK, Dhingra N, Sidhu MS, Singh PK, Rani N, Al-Ansari N, Alataway A, Dewidar AZ, Mattar MA. Biochar influences nitrogen and phosphorus dynamics in two texturally different soils. Sci Rep 2024; 14:6533. [PMID: 38503773 PMCID: PMC10951405 DOI: 10.1038/s41598-024-55527-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 02/24/2024] [Indexed: 03/21/2024] Open
Abstract
Nitrogen (N) and phosphorus (P) are vital for crop growth. However, most agricultural systems have limited inherent ability to supply N and P to crops. Biochars (BCs) are strongly advocated in agrosystems and are known to improve the availability of N and P in crops through different chemical transformations. Herein, a soil-biochar incubation experiment was carried out to investigate the transformations of N and P in two different textured soils, namely clay loam and loamy sand, on mixing with rice straw biochar (RSB) and acacia wood biochar (ACB) at each level (0, 0.5, and 1.0% w/w). Ammonium N (NH4-N) decreased continuously with the increasing incubation period. The ammonium N content disappeared rapidly in both the soils incubated with biochars compared to the unamended soil. RSB increased the nitrate N (NO3-N) content significantly compared to ACB for the entire study period in both texturally divergent soils. The nitrate N content increased with the enhanced biochar addition rate in clay loam soil until 15 days after incubation; however, it was reduced for the biochar addition rate of 1% compared to 0.5% at 30 and 60 days after incubation in loamy sand soil. With ACB, the net increase in nitrate N content with the biochar addition rate of 1% remained higher than the 0.5% rate for 60 days in clay loam and 30 days in loamy sand soil. The phosphorus content remained consistently higher in both the soils amended with two types of biochars till the completion of the experiment.
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Affiliation(s)
- Rajeev Kumar Gupta
- School of Agriculture, Lovely Professional University, Jalandhar, 144001, Punjab, India.
| | - Monika Vashisht
- School of Agriculture, Lovely Professional University, Jalandhar, 144001, Punjab, India
| | - R K Naresh
- Department of Agronomy, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, 250110, U.P., India
| | - Nitish Dhingra
- Electron Microscopy & Nanoscience Laboratory, Department of Soil Science, Punjab Agricultural University, Ludhiana, 141004, Punjab, India
| | - Mehra S Sidhu
- Electron Microscopy & Nanoscience Laboratory, Department of Soil Science, Punjab Agricultural University, Ludhiana, 141004, Punjab, India
| | - P K Singh
- Director Extension, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, 250110, U.P., India
| | - Neeraj Rani
- School of Organic Farming, Punjab Agricultural University, Ludhiana, 141004, India
| | - Nadhir Al-Ansari
- Department of Civil, Environmental and Natural Resources Engineering, Lulea University of Technology, 97187, Lulea, Sweden.
| | - Abed Alataway
- Prince Sultan Bin Abdulaziz International Prize for Water Chair, Water and Desert Research, Prince Sultan Institute for Environmental, King Saud University, P.O. Box 2454, 11451, Riyadh, Saudi Arabia
| | - Ahmed Z Dewidar
- Prince Sultan Bin Abdulaziz International Prize for Water Chair, Water and Desert Research, Prince Sultan Institute for Environmental, King Saud University, P.O. Box 2454, 11451, Riyadh, Saudi Arabia
- Department of Agricultural Engineering, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, 11451, Riyadh, Saudi Arabia
| | - Mohamed A Mattar
- Prince Sultan Bin Abdulaziz International Prize for Water Chair, Water and Desert Research, Prince Sultan Institute for Environmental, King Saud University, P.O. Box 2454, 11451, Riyadh, Saudi Arabia.
- Department of Agricultural Engineering, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, 11451, Riyadh, Saudi Arabia.
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Naresh RK, Singh PK, Bhatt R, Chandra MS, Kumar Y, Mahajan NC, Gupta SK, Al-Ansari N, Mattar MA. Publisher Correction: Long‑term application of agronomic management strategies effects on soil organic carbon, energy budgeting, and carbon footprint under rice-wheat cropping system. Sci Rep 2024; 14:6282. [PMID: 38491029 PMCID: PMC10942967 DOI: 10.1038/s41598-024-56776-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2024] Open
Affiliation(s)
- R K Naresh
- Department of Agronomy, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, UP, India
| | - P K Singh
- Director Extension Education, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, UP, India
| | - Rajan Bhatt
- Krishi Vigyan Kendra, Amritsar, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Mandapelli Sharath Chandra
- AICRP On Integrated Farming System, Professor Jayashankar Telangana State Agricultural University, Rajendranagar, Telangana, India
| | - Yogesh Kumar
- Department of Soil Science & Agricultural Chemistry, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, UP, India
| | - N C Mahajan
- Institute of Agricultural Science, Department of Agronomy, Banaras Hindu University, Varanasi, U. P, India
| | - S K Gupta
- Department of Agronomy, Bihar Agricultural University Sabour, Bhagalpur, Bihar, India
| | - Nadhir Al-Ansari
- Department of Civil, Environmental and Natural Resources Engineering, Lulea University of Technology, 97187, Lulea, Sweden.
| | - Mohamed A Mattar
- Prince Sultan Bin Abdulaziz International Prize for Water Chair, Prince Sultan Institute for Environmental, Water and Desert Research, King Saud University, 11451, Riyadh, Saudi Arabia.
- Department of Agricultural Engineering, College of Food and Agriculture Sciences, King Saud University, 11451, Riyadh, Saudi Arabia.
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Sivalingam J, Niranjan SK, Yadav DK, Singh SP, Sukhija N, Kanaka KK, Singh PK, Singh AP. Phenotypic and genetic characterization of unexplored, potential cattle population of Madhya Pradesh. Trop Anim Health Prod 2024; 56:102. [PMID: 38478192 DOI: 10.1007/s11250-024-03946-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2023] [Accepted: 03/01/2024] [Indexed: 03/24/2024]
Abstract
Bawri or Garri, a non-descript cattle population managed under an extensive system in Madhya Pradesh state of India, was identified and characterized both genetically and phenotypically to check whether or not it can be recognised as a breed. The cattle have white and gray colour and are medium sized with 122.5 ± 7.5 cm and 109.45 ± 0.39 cm height at withers in male and female, respectively. Double-digest restriction site associated DNA (ddRAD) sequencing was employed to identify ascertainment bias free SNPs representing the entire genome cost effectively; resulting in calling 1,156,650 high quality SNPs. Observed homozygosity was 0.76, indicating Bawri as a quite unique population. However, the inbreeding coefficient was 0.025, indicating lack of selection. SNPs found here can be used in GWAS and genetic evaluation programs. Considering the uniqueness of Bawri cattle, it can be registered as a breed for its better genetic management.
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Affiliation(s)
- Jayakumar Sivalingam
- Presently at ICAR-Directorate of Poultry Research, Hyderabad, India.
- ICAR-National Bureau of Animal Genetic Resources, Karnal, 132001, Haryana, India.
| | - S K Niranjan
- Presently at ICAR-Directorate of Poultry Research, Hyderabad, India
| | | | - S P Singh
- ICAR-National Bureau of Animal Genetic Resources, Karnal, 132001, Haryana, India
| | - Nidhi Sukhija
- Krishi Vigyan Kendra, Rajmata Vijayaraje Scindia Krishi Vishwavidyalaya, Morena, MP, India
| | - K K Kanaka
- Central Tasar Research and Training Institute, Ranchi, India
| | - P K Singh
- Presently at ICAR-Directorate of Poultry Research, Hyderabad, India
| | - Ajit Pratap Singh
- ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, India
- Nanaji Deshmukh Veterinary Science University, Jabalpur, MP, India
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Wallace Z, Heunis T, Paterson RL, Suckling RJ, Grant T, Dembek M, Donoso J, Brener J, Long J, Bunjobpol W, Gibbs-Howe D, Kay DP, Leneghan DB, Godinho LF, Walker A, Singh PK, Knox A, Leonard S, Dorrell L. Instability of the HLA-E peptidome of HIV presents a major barrier to therapeutic targeting. Mol Ther 2024; 32:678-688. [PMID: 38219014 PMCID: PMC10928138 DOI: 10.1016/j.ymthe.2024.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 11/14/2023] [Accepted: 01/08/2024] [Indexed: 01/15/2024] Open
Abstract
Naturally occurring T cells that recognize microbial peptides via HLA-E, a nonpolymorphic HLA class Ib molecule, could provide the foundation for new universal immunotherapeutics. However, confidence in the biological relevance of putative ligands is crucial, given that the mechanisms by which pathogen-derived peptides can access the HLA-E presentation pathway are poorly understood. We systematically interrogated the HIV proteome using immunopeptidomic and bioinformatic approaches, coupled with biochemical and cellular assays. No HIV HLA-E peptides were identified by tandem mass spectrometry analysis of HIV-infected cells. In addition, all bioinformatically predicted HIV peptide ligands (>80) were characterized by poor complex stability. Furthermore, infected cell elimination assays using an affinity-enhanced T cell receptor bispecific targeted to a previously reported HIV Gag HLA-E epitope demonstrated inconsistent presentation of the peptide, despite normal HLA-E expression on HIV-infected cells. This work highlights the instability of the HIV HLA-E peptidome as a major challenge for drug development.
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Affiliation(s)
- Zoë Wallace
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
| | - Tiaan Heunis
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK
| | | | | | | | | | - Jose Donoso
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK
| | | | - Joshua Long
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK
| | | | | | - Daniel P Kay
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK
| | | | | | | | | | - Andrew Knox
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK
| | | | - Lucy Dorrell
- Immunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK
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Dutta RK, Abu YF, Tao J, Chupikova I, Oleas J, Singh PK, Vitari NA, Qureshi R, Ramakrishnan S, Roy S. Altered gut microbiome drives heightened pain sensitivity in a murine model of metastatic triple-negative breast cancer. Am J Cancer Res 2024; 14:274-299. [PMID: 38323292 PMCID: PMC10839306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Accepted: 12/25/2023] [Indexed: 02/08/2024] Open
Abstract
The microbiota residing in the gut environment is essential for host homeostasis. Increasing evidence suggests that microbial perturbation (dysbiosis) regulates cancer initiation and progression at local and distant sites. Here, we have identified microbial dysbiosis with the depletion of commensal bacteria as a host-intrinsic factor associated with metastatic dissemination to the bone. Using a mouse model of triple-negative mammary cancer, we demonstrate that a pre-established disruption of microbial homeostasis using an antibiotic cocktail increases tumor growth, enhanced circulating tumor cells, and subsequent dissemination to the bone. We found that the presence of pathogenic bacteria and loss of commensal bacteria in an antibiotic-induced gut environment is associated with sustained inflammation. Increased secretion of G-CSF and MMP-9 in intestinal tissues, followed by increased neutrophil infiltration and severe systemic inflammation in tumor-bearing mice, indicates the direct consequence of a dysbiotic microbiome. Increased neutrophil infiltration to the bone metastatic niche facilitates extravasation and transendothelial migration of tumor cells. It provides a novel, pre-established, and favorable environment to form an immunosuppressive pre-metastatic niche. The presence of tumor cells in immunosuppressive metastatic tumor niche disrupts the balance between osteoblasts and osteoclasts, promotes osteoclast differentiation, and remodels the bone structure. Excessive bone resorption by osteoclasts causes bone degradation and ultimately causes extreme pain in a bone metastatic mouse model. In clinical settings, bone metastasis is associated with intractable severe pain that severely compromises the quality of life in these patients.
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Affiliation(s)
- Rajib K Dutta
- Department of Surgery, University of MiamiMiami, FL 33136, USA
| | - Yaa F Abu
- Department of Surgery, University of MiamiMiami, FL 33136, USA
- Department of Microbiology and Immunology, University of MiamiMiami, FL 33136, USA
| | - Junyi Tao
- Department of Surgery, University of MiamiMiami, FL 33136, USA
| | - Irina Chupikova
- Department of Surgery, University of MiamiMiami, FL 33136, USA
| | - Janneth Oleas
- Department of Surgery, University of MiamiMiami, FL 33136, USA
| | - Praveen K Singh
- Department of Surgery, University of MiamiMiami, FL 33136, USA
| | - Nicolas A Vitari
- Department of Surgery, University of MiamiMiami, FL 33136, USA
- Department of Microbiology and Immunology, University of MiamiMiami, FL 33136, USA
| | - Rehana Qureshi
- Department of Pathology, University of MiamiMiami, FL 33136, USA
| | | | - Sabita Roy
- Department of Surgery, University of MiamiMiami, FL 33136, USA
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Naresh RK, Singh PK, Bhatt R, Chandra MS, Kumar Y, Mahajan NC, Gupta SK, Al-Ansari N, Mattar MA. Long-term application of agronomic management strategies effects on soil organic carbon, energy budgeting, and carbon footprint under rice-wheat cropping system. Sci Rep 2024; 14:337. [PMID: 38172121 PMCID: PMC10764914 DOI: 10.1038/s41598-023-48785-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 11/30/2023] [Indexed: 01/05/2024] Open
Abstract
In the plains of western North India, traditional rice and wheat cropping systems (RWCS) consume a significant amount of energy and carbon. In order to assess the long-term energy budgets, ecological footprint, and greenhouse gas (GHG) pollutants from RWCS with residual management techniques, field research was conducted which consisted of fourteen treatments that combined various tillage techniques, fertilization methods, and whether or not straw return was present in randomized block design. By altering the formation of aggregates and the distribution of carbon within them, tillage techniques can affect the dynamics of organic carbon in soil and soil microbial activity. The stability of large macro-aggregates (> 2 mm), small macro-aggregates (2.0-2.25 mm), and micro-aggregates in the topsoil were improved by 35.18%, 33.52%, and 25.10%, respectively, over conventional tillage (0-20 cm) using tillage strategies for conservation methods (no-till in conjunction with straw return and organic fertilizers). The subsoil (20-40 cm) displayed the same pattern. In contrast to conventional tilling with no straw returns, macro-aggregates of all sizes and micro-aggregates increased by 24.52%, 28.48%, and 18.12%, respectively, when conservation tillage with organic and chemical fertilizers was used. The straw return (aggregate-associated C) also resulted in a significant increase in aggregate-associated carbon. When zero tillage was paired with straw return, chemical, and organic fertilizers, the topsoil's overall aggregate-associated C across all aggregate proportions increased. Conversely, conventional tillage, in contrast to conservation tillage, included straw return as well as chemical and organic fertilizers and had high aggregate-associated C in the subsurface. This study finds that tillage techniques could change the dynamics of microbial biomass in soils and organic soil carbon by altering the aggregate and distribution of C therein.
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Affiliation(s)
- R K Naresh
- Department of Agronomy, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, UP, India
| | - P K Singh
- Director Extension Education, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, UP, India
| | - Rajan Bhatt
- Krishi Vigyan Kendra, Amritsar, Punjab Agricultural University, Ludhiana, Punjab, India
| | - Mandapelli Sharath Chandra
- AICRP On Integrated Farming System, Professor Jayashankar Telangana State Agricultural University, Rajendranagar, Telangana, India
| | - Yogesh Kumar
- Department of Soil Science & Agricultural Chemistry, Sardar Vallabhbhai Patel University of Agriculture & Technology, Meerut, UP, India
| | - N C Mahajan
- Institute of Agricultural Science, Department of Agronomy, Banaras Hindu University, Varanasi, U. P, India
| | - S K Gupta
- Department of Agronomy, Bihar Agricultural University Sabour, Bhagalpur, Bihar, India
| | - Nadhir Al-Ansari
- Department of Civil, Environmental and Natural Resources Engineering, Lulea University of Technology, 97187, Lulea, Sweden.
| | - Mohamed A Mattar
- Prince Sultan Bin Abdulaziz International Prize for Water Chair, Prince Sultan Institute for Environmental, Water and Desert Research, King Saud University, 11451, Riyadh, Saudi Arabia.
- Department of Agricultural Engineering, College of Food and Agriculture Sciences, King Saud University, 11451, Riyadh, Saudi Arabia.
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Suarez Arbelaez MC, Monshine J, Porto JG, Shah K, Singh PK, Roy S, Amin K, Marcovich R, Herrmann TRW, Shah HN. The emerging role of the urinary microbiome in benign noninfectious urological conditions: an up-to-date systematic review. World J Urol 2023; 41:2933-2948. [PMID: 37737900 DOI: 10.1007/s00345-023-04588-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 08/21/2023] [Indexed: 09/23/2023] Open
Abstract
PURPOSE The goal of this systematic review was to examine the current literature on the urinary microbiome and its associations with noninfectious, nonmalignant, urologic diseases. Secondarily, we aimed to describe the most common bioinformatics used to analyze the urinary microbiome. METHODS A comprehensive literature search of Ovid MEDLINE using the keywords "microbiota" AND "prostatic hyperplasia," "microbiota" AND "urinary bladder, overactive," "microbiota" AND "pelvic pain," and "microbiota" AND "urolithiasis" OR "nephrolithiasis" OR "urinary calculi" AND "calcium oxalate" was performed to identify relevant clinical microbiome studies associated with noninfectious benign urological conditions published from 2010 to 2022. We included human studies that evaluated the urinary, stone, or semen microbiota, or any combination of the above-mentioned locations. RESULTS A total of 25 human studies met the inclusion criteria: 4 on benign prostatic hyperplasia (BPH), 9 on overactive bladder (OAB), 8 on calcium oxalate stones, and 4 on chronic pelvic pain syndrome (CPPS). Specific taxonomic profiles in the urine microbiome were associated with each pathology, and evaluation of alpha- and beta-diversity and relative abundance was accounted for most of the studies. Symptom prevalence and severity were also analyzed and showed associations with specific microbes. CONCLUSION The study of the urogenital microbiome is rapidly expanding in urology. Noninfectious benign urogenital diseases, such as BPH, calcium oxalate stones, CPPS, and OAB were found to be associated with specific microbial taxonomies. Further research with larger study populations is necessary to solidify the knowledge of the urine microbiome in these conditions and to facilitate the creation of microbiome-based diagnostic and therapeutic approaches.
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Affiliation(s)
| | - Joshua Monshine
- Desai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Joao G Porto
- Desai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Khushi Shah
- Desai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Praveen K Singh
- Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Sabita Roy
- Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Katherine Amin
- Desai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | - Robert Marcovich
- Desai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, FL, USA
| | | | - Hemendra N Shah
- Desai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, FL, USA.
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Sasmal PK, Sahoo A, Mishra TS, Das Poddar KK, Ali SM, Singh PK, Kumar P. Feasibility and outcomes of Desarda vs Lichtenstein hernioplasty by local anesthesia for inguinal hernia: a noninferiority randomized clinical trial. Hernia 2023; 27:1155-1163. [PMID: 37452974 DOI: 10.1007/s10029-023-02837-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 07/04/2023] [Indexed: 07/18/2023]
Abstract
INTRODUCTION The Desarda autologous tissue repair is comparable to the Lichtenstein hernioplasty for inguinal hernia regarding recurrence, chronic groin pain, and return to work activities. This study was designed to establish the outcomes of Desarda's repair versus Lichtenstein's hernioplasty concerning post-operative recovery to normal gait and its feasibility under local anesthesia (LA). MATERIALS AND METHODS This study was a single-center, prospective, double-blinded, non-inferiority, randomized trial. Patients undergoing open hernia repair for primary inguinal hernia were included. Patients were randomly assigned and followed up for 2 years. The primary endpoint was the time to return to normal gait post-surgery with comfort (non-inferiority margin fixed as 0.5 days). The secondary outcomes studied were post-operative pain score, the time required to return to work (all previously performed activities), and surgical-site occurrences (SSO). RESULTS One hundred ten eligible patients were randomly assigned [56 patients (50.9%) in the Desarda group and 54 patients (49.1%) in the Lichtenstein group]. All the procedures were safely performed under LA. The median (interquartile range) time for resuming gait post-surgery with comfort was 5 days in the Desarda vs 4 days in Lichtenstein's arm (P = 0.16), thereby failing to demonstrate non-inferiority of Desarda against Lichtenstein hernioplasty. However, there were no significant differences in days to return to work, SSO, chronic groin pain, and recurrence within two years of surgery. CONCLUSIONS AND RELEVANCE This study could not demonstrate the non-inferiority of the Desarda repair versus Lichtenstein hernioplasty regarding the time taken to return to normal gait. Comparing the days to return to work, pain score, SSO, and chronic groin pain, including recurrence rate, Desarda repair faired equally with Lichtenstein hernioplasty, thereby highlighting its feasibility and efficacy under LA. TRIAL REGISTRATION ClinicalTrials.gov Identifier: NCT03512366.
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Affiliation(s)
- P K Sasmal
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India.
| | - A Sahoo
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India
| | - T S Mishra
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India
| | - K K Das Poddar
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India
| | - S M Ali
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India
| | - P K Singh
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India
| | - P Kumar
- Department of General Surgery, All India Institute of Medical Sciences, Sijua, Bhubaneswar, 751019, India
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Das S, Nirmal K, Gupta C, Jain C, Gupta N, Arora V, Sharma S, Mohapatra S, Singh PK, Dar SA, Rai G, Goyal N, Meena M, Ahmad N, Singh NP. COVID associated fungal sinusitis: An experience from a tertiary care hospital. Clin Otolaryngol 2023; 48:715-720. [PMID: 37308457 DOI: 10.1111/coa.14061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 02/23/2023] [Accepted: 03/24/2023] [Indexed: 06/14/2023]
Affiliation(s)
- Shukla Das
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Kirti Nirmal
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Chhavi Gupta
- Department of Infectious Disease, All India Institute of Medical Sciences, New Delhi, 110029, India
- Department of Infectious Disease, Northern Railway Central Hospital, New Delhi, 110001, India
| | - Charu Jain
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Neelima Gupta
- Department of ENT, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Vipin Arora
- Department of ENT, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Sonal Sharma
- Department of Pathology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Subhashree Mohapatra
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Praveen K Singh
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Sajad A Dar
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
- Research and Scientific Studies Unit, College of Nursing, Jazan University, Jazan, 45142, Saudi Arabia
| | - Gargi Rai
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Nisha Goyal
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Manoj Meena
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Nadeem Ahmad
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
| | - Narendra P Singh
- Department of Microbiology, University College of Medical Sciences (University of Delhi) & GTB Hospital, Delhi, 110095, India
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Gupta C, Das S, Gaurav V, Singh PK, Rai G, Datt S, Tigga RA, Pandhi D, Bhattacharya SN, Ansari MA, Dar SA. Review on host-pathogen interaction in dermatophyte infections. J Mycol Med 2023; 33:101331. [PMID: 36272379 DOI: 10.1016/j.mycmed.2022.101331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 08/30/2022] [Accepted: 09/13/2022] [Indexed: 11/24/2022]
Abstract
Dermatophytosis is a common superficial fungal infection of the skin and its appendages caused by dermatophytes. Recent times have witnessed a dynamic evolution of dermatophytes driven by their ecology, reproduction, pathogenicity and host immune response, influenced by population migration and socioeconomic status. Dermatophytes establish infection following successful adherence of arthroconidia to the surface of keratinized tissues. The proteolytic enzymes released during adherence and invasion not only ascertain their survival but also allow the persistence of infection in the host. While the cutaneous immune surveillance mechanism, after antigen exposure and presentation, leads to activation of T lymphocytes and subsequent clonal expansion generating effector T cells that differentially polarize to a predominant Th17 response, the response fails to eliminate the pathogen despite the presence of high levels of IFN-γ. In chronic dermatophytosis, antigens are a constant source of stimulus promoting a dysregulated Th17 response causing inflammation. The host-derived iTreg response fails to counterbalance the inflammation and instead polarizes to Th17 lineage, aggravating the chronicity of the infection. Increasing antifungal resistance and recalcitrant dermatophytosis has impeded the overall clinical remission. Human genetic research has the potential to generate knowledge to explore new therapeutic targets. The review focuses on understanding specific virulence factors involved in pathogenesis and defining the role of dysregulated host immune response against chronic dermatophytic infections for future management strategies.
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Affiliation(s)
- Chhavi Gupta
- All India Institute of Medical Science, New Delhi, 110029, India; Present Address: Consultant Infectious Diseases, Fortis Hospital, Sector 62, Gautam Buddh Nagar, Noida, Uttar Pradesh, 201301, India
| | - Shukla Das
- Department of Microbiology, University College of Medical Sciences (University of Delhi), and GTB Hospital, Delhi, 110095, India.
| | - Vishal Gaurav
- Department of Dermatology & STD, University College of Medical Sciences (University of Delhi) and GTB Hospital, Delhi, 110095, India
| | - Praveen K Singh
- Department of Microbiology, University College of Medical Sciences (University of Delhi), and GTB Hospital, Delhi, 110095, India
| | - Gargi Rai
- Department of Microbiology, University College of Medical Sciences (University of Delhi), and GTB Hospital, Delhi, 110095, India
| | - Shyama Datt
- Department of Microbiology, University College of Medical Sciences (University of Delhi), and GTB Hospital, Delhi, 110095, India
| | - Richa A Tigga
- Department of Microbiology, University College of Medical Sciences (University of Delhi), and GTB Hospital, Delhi, 110095, India
| | - Deepika Pandhi
- Department of Dermatology & STD, University College of Medical Sciences (University of Delhi) and GTB Hospital, Delhi, 110095, India
| | - Sambit N Bhattacharya
- Department of Dermatology & STD, University College of Medical Sciences (University of Delhi) and GTB Hospital, Delhi, 110095, India
| | - Mohammad A Ansari
- Department of Microbiology, University College of Medical Sciences (University of Delhi), and GTB Hospital, Delhi, 110095, India
| | - Sajad A Dar
- Research and Scientific Studies Unit, College of Nursing & Allied Health Sciences, Jazan University, Jazan, 45142, Saudi Arabia.
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Pareta AS, Singh PK, Sarkar A, Panda SK. Quasi-static indentation damage mechanics of PU foam core reinforced with fly ash particulate. J CELL PLAST 2023. [DOI: 10.1177/0021955x231154620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The fly ash (FA) particulates are used in this study to reinforce the polyurethane foam (PUF) core. The FA particles inclusion improves the mechanical performance of the PUF core under compression by increasing its modulus of elasticity. Low-velocity impacts have damage dynamics that are pretty similar to quasi-static indentation. Consequently, the indentation resistance capability of the PUF core is investigated for three types of indenter nose tips with varied FA wt. Percentages (flat-circular, hemispherical, and conical). The results reveal that the reinforced foam core’s resistance varies with reinforcement percentage under indentation. However, FA reinforcement to PUF does not necessarily improve indentation resistance. The damage mechanism of the PUF core under indentation has been evaluated for each type of indenter. The interaction of crushing, shear, and tear of the damaged surface with the change in indenter nose tip has been explained with 0–20% variation of FA particles. Scanning electron microscope (SEM) images are taken for the analysis of the damaged PUF core cross-section at the indented location. Earlier mechanical findings of the scatter in deformation behavior with the indenter nose tip geometry are substantiated by the SEM studies.
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Affiliation(s)
- Ashish Singh Pareta
- Department of Mechanical Engineering, Indian Institute of Technology (BHU), Varanasi, India
| | - PK Singh
- Department of Mechanical Engineering, Indian Institute of Technology (BHU), Varanasi, India
| | - Arnab Sarkar
- Department of Mechanical Engineering, Indian Institute of Technology (BHU), Varanasi, India
| | - SK Panda
- Department of Mechanical Engineering, Indian Institute of Technology (BHU), Varanasi, India
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12
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Verma H, Doshi J, Narendra G, Raju B, Singh PK, Silakari O. Energy decomposition and waterswapping analysis to investigate the SNP associated DPD mediated 5-FU resistance. SAR QSAR Environ Res 2023; 34:39-64. [PMID: 36779961 DOI: 10.1080/1062936x.2023.2165146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 12/31/2022] [Indexed: 06/18/2023]
Abstract
5-fluorouracil is an essential component of systemic chemotherapy for colon, breast, head, and neck cancer patients. However, tumoral overexpression of the dihydropyrimidine dehydrogenase has rendered 5-FU clinically ineffective by inactivating it to 5'-6'-dihydro fluorouracil. The responses to 5-FU in terms of efficacy and toxicity greatly differ depending upon the population group, because of variability in the DPD activity levels. In the current study, key active site amino acids involved in the 5-FU inactivation were investigated by modelling the 3D structure of human DPD in a complex with 5-FU. The identified amino acids were analyzed for their possible missense mutations available in dbSNP database. Out of 12 missense SNPs, four were validated either by sequencing in the 1000 Genomes project or frequency/genotype data. The recorded validated missense SNPs were further considered to analyze the effect of their respective alterations on 5-FU binding. Overall findings suggested that population bearing the Glu611Val DPD mutation (rs762523739) is highly vulnerable to 5-FU resistance. From the docking, electrostatic complementarity, dynamics, and energy decomposition analyses it was found that the above mutation showed superior scores than the wild DPD -5FU complex. Therefore, prescribing prodrug NUC-3373 or DPD inhibitors (Gimeracil/3-Cyano-2,6-Dihydroxypyridines) as adjuvant therapy may overcome the 5-FU resistance.
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Affiliation(s)
- H Verma
- Molecular Modelling Laboratory (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
| | - J Doshi
- BioInsight Solutions, Mumbai, India
| | - G Narendra
- Molecular Modelling Laboratory (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
| | - B Raju
- Molecular Modelling Laboratory (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
| | - P K Singh
- Integrative Physiology and Pharmacology, Institute of Biomedicine, Faculty of Medicine, University of Turku, Turku, Finland
| | - O Silakari
- Molecular Modelling Laboratory (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
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Singh PK, Shah DK. Massive Subcutaneous Emphysema and Pneumothorax in a Case of Attacked by a Domesticated Bull - An Autopsy Based Diagnosis. Kathmandu Univ Med J (KUMJ) 2023; 21:100-102. [PMID: 37800436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/07/2023]
Abstract
Subcutaneous emphysema is a condition when air or gas gets trapped within the subcutaneous layer. It is characterised by crackling feeling on palpation of the skin known as subcutaneous crepitation which is described as touching rice krispies. A 70 years male from hilly region of Nepal with agricultural background suffered multiple injuries sustained due to an attack by domesticated bull in his house. Upon the incident the injured male was taken to hospital, where he was declared "Brought Dead" by the Emergency Department of Dhulikhel Hospital, Kathmandu University Hospital. His body was brought for autopsy in Department of Forensic Medicine and Toxicology of Kathmandu University School of Medical Sciences. On complete autopsy, massive subcutaneous emphysema and pneumothorax was demonstrated. The details of finding are discussed in detail as follows.
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Affiliation(s)
- P K Singh
- Department of Forensic Medicine, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu University School of Medical Sciences, Dhulikhel, Kavre, Nepal
| | - D K Shah
- Department of Forensic Medicine, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu University School of Medical Sciences, Dhulikhel, Kavre, Nepal
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Jain N, Shiv A, Sinha N, Singh PK, Prasad P, Balyan HS, Gupta PK. Leaf rust responsive miRNA and their target genes in wheat. Funct Integr Genomics 2022; 23:14. [PMID: 36550370 DOI: 10.1007/s10142-022-00928-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/12/2022] [Accepted: 11/15/2022] [Indexed: 12/24/2022]
Abstract
Small RNA sequencing (sRNA-seq) and degradome analysis were used for the identification of miRNAs and their target host genes in a pair of near-isogenic lines (NILs), which differed for the presence of leaf rust resistance gene Lr28. The study led to identification of (i) 506 known and 346 novel miRNAs; and (ii) 5054 target genes including 4557 in silico predicted and 497 degradome-based genes using 105 differentially expressed (DE) miRNAs. A subset of 128 targets (67 in silico + 61 degradome-based) was differentially expressed in RNA-seq data that was generated by us earlier using the same pair of NILs; among these 128 targets, 58 target genes exhibited an inverse relationship with the DE miRNAs (expression of miRNAs and activation/suppression of target genes). Eight miRNAs which belonged to the conserved miRNA families and were known to be induced in response to fungal diseases in plants included the following: miR156, miR158, miR159, miR168, miR169, miR172, miR319, miR396. The target genes belonged to the following classes of genes known to be involved in downstream disease resistance pathways; peroxidases, sugar transporters, auxin response signaling, oxidation-reduction, etc. It was also noticed that although a majority of miRNAs and target genes followed the above classical inverse relationship, there were also examples, where no such relationship was observed. Among the target genes, there were also 51 genes that were not only regulated by miRNAs, but were also differentially methylated at sequences including the following segments: promotors, introns, TSS, exons. The results of the present study suggest a complex interplay among miRNA genes, target genes, and various epigenetic controls, which regulate the expression of genes involved in downstream pathways for disease resistance.
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Affiliation(s)
- Neelu Jain
- Division of Genetics, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Aalok Shiv
- Division of Genetics, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Nivedita Sinha
- Division of Genetics, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - P K Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Pramod Prasad
- Regional Station, ICAR-Indian Institute of Wheat and Barley Research, Flowerdale, Shimla, 171002, India
| | - H S Balyan
- Department of Genetics and Plant Breeding, Ch. Charan Singh University, Meerut, 250004, India
| | - P K Gupta
- Department of Genetics and Plant Breeding, Ch. Charan Singh University, Meerut, 250004, India.
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Behl R, Niranjan SK, Behl J, Arora R, Singh PK, Vijh RK. Genetic characterization of donkeys of Braj region of India. Anim Biotechnol 2022; 33:1588-1590. [PMID: 33969810 DOI: 10.1080/10495398.2021.1919131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The grey type donkeys of Braj region of Uttar Pradesh in India were genetically characterized using ten heterologous microsatellite loci. At these loci the PCR product size ranged from 75-95 bp at locus HTG6 to 251-277 bp at locus COR18. The observed number of alleles varied from 4 (HTG15) to 10 (HTG7 and AHT4) with a mean of 7.50 ± 1.96. The observed heterozygosity ranged from 0.46 (HTG6 and NVHEQ54) to 0.79 (COR18) with a mean of 0.66 ± 0.12. The mean genetic diversity estimate (FIS) was 0.157. When these donkeys were compared on the basis of allelic frequency data at these loci to the brown type donkeys of Ladakh, Spiti and Rayalseema regions in the union territories/states of Ladakh, Himachal Pradesh and Andhra Pradesh, respectively, they clustered independently from these three donkey populations in a dendrogram based on Goldstein's average square distances indicating their genetic distinctness.
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Affiliation(s)
- Rahul Behl
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - S K Niranjan
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - Jyotsna Behl
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - Reena Arora
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - P K Singh
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
| | - R K Vijh
- ICAR-National Bureau of Animal Genetic Resources, Karnal, India
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16
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Singh PK, Das S, Rai G, Ansari MA, Dar SA, Singh T, Pandhi D. A Snapshot of T Cell Subset Cytokines in Pemphigus Vulgaris: A Cross-Sectional Study. Cureus 2022; 14:e29890. [PMID: 36348826 PMCID: PMC9630798 DOI: 10.7759/cureus.29890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/02/2022] [Indexed: 11/07/2022] Open
Abstract
Objective: The purpose of this study was to assess the serum levels of cytokines produced by the Th1 (IFN‐γ, IL-12), Th2 (IL‐4), Th17 (IL-6, IL‐17A, IL‐23), and Treg (IL‐10 and TGF-β) pathways in individuals with active pemphigus vulgaris (PV) and to determine whether these levels were correlated with the severity of the disease condition. Patients and methods: This study was conducted with 90 individuals, of which 50 were PV patients and 40 healthy individuals (age and gender-matched) as controls. Serum samples were collected and tested for cytokine levels by ELISA (enzyme-linked immunosorbent assay). The cytokine levels in the serum of PV patients and healthy controls were compared statistically using the Mann-Whitney test for nonparametric samples. The strength of the association between the variables was evaluated using the Spearman correlation test. Results: The mean serum levels of IFN- γ (p < 0.001), IL-6 (p < 0.001), IL-10 (p < 0.001), IL-12 (p < 0.05), and IL-17 (p < 0.001) were significantly higher and TGF-β were significantly low in the PV patients than those observed in the control group. The mean concentration of serum IL-4 in patients with PV did not differ from those in the control group. Conclusions: In active PV, the Th1 and Th17 pathways are involved in the development and progression of the disease, whereas the Th2 pathway is blocked. Both of these pathways play a significant role in the disease. It is possible that the Treg pathway acts as an antagonist to the Th1 and Th17 pathways, which would cause the disease to become more localised. This study lays the foundation for a better understanding of the aetiology of PV and implies that cytokines could be used as potential therapeutic targets and disease activity biomarkers.
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Singh S, Sangraula H, Singh PK, Sarraf DP. Evaluation of Antinociceptive Activity of Ficus Religiosa Root Extract in Swiss Albino Mice. Kathmandu Univ Med J (KUMJ) 2022; 20:412-416. [PMID: 37795714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
Background Ficus religiosa, commonly known as peepal, is widely distributed in Indian subcontinent. It has been used as an antiepileptic, aphrodisiac, analgesic, antiinflammatory and laxative in traditional medicine. Objective To explore the analgesic effect of aqueous root extract of Ficus religiosa using thermal and chemical models of pain in swiss albino mice. Method The aqueous aerial root extract of Ficus religiosa was prepared using soxhlet apparatus. The anti-nociceptive effect of the extract at doses of 50 and 100 mg/kg was evaluated using peripheral (acetic acid-induced abdominal writhing), spinal (tail flick) and supra-spinal (hot plate) behavioral models of pain. All data were presented as Mean ± SEM. Statistical differences between Ficus religiosa (50 and 100 mg/kg) and standard control groups were evaluated using Mann-Whitney U test. Result There was significant dose dependent increase in the mean reaction time compared to the vehicle control in hot plate and tail- flick test. In acetic acid induced writhing test, mice treated with Ficus religiosa (50 and 100 mg/kg) exhibited significant dose-dependent decrease in the mean number of writhes (57.45% and 79.20% respectively) compared to the vehicle control. The activity of Ficus religiosa extract at doses of 50 and 100 mg/kg was equipotent to Standard control (Morphine and Indomethacin) used in different test models. Conclusion The extract of Ficus religiosa possesses both central and peripheral analgesic activity thus validating the traditional use of this plant in the management of pain.
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Affiliation(s)
- S Singh
- Department of Pharmacology, National Medical College Teaching Hospital, Birgunj, Nepal
| | - H Sangraula
- Department of Pharmacology, Saba University School of Medicine, Saba, Dutch Caribbean
| | - P K Singh
- Department of Pediatrics, Narayani Sub-regional Hospital, Birgunj, Nepal
| | - D P Sarraf
- Department of Clinical Pharmacology, B.P. Koirala Institute of Health Sciences, Dharan, Nepal
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Israeli JM, Suarez Arbelaez MC, Tipton CD, Leong JY, Ibrahim E, Khodamoradi K, Roy S, Singh PK, Ramasamy R. SEMEN MICROBIOME PROFILING IN MEN WITH NON-OBSTRUCTIVE AZOOSPERMIA: A NEXT-GENERATION SEQUENCING ANALYSIS. Fertil Steril 2022. [DOI: 10.1016/j.fertnstert.2022.08.813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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19
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Wallace Z, Singh PK, Dorrell L. Combination strategies to durably suppress HIV-1: Soluble T cell receptors. J Virus Erad 2022; 8:100082. [PMID: 36065296 PMCID: PMC9440443 DOI: 10.1016/j.jve.2022.100082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 07/06/2022] [Accepted: 08/18/2022] [Indexed: 12/12/2022] Open
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Azameti MK, Ranjan A, Singh PK, Gaikwad K, Singh AK, Dalal M, Arora A, Rai V, Padaria JC. Transcriptome profiling reveals the genes and pathways involved in thermo-tolerance in wheat (Triticum aestivum L.) genotype Raj 3765. Sci Rep 2022; 12:14831. [PMID: 36050336 PMCID: PMC9437100 DOI: 10.1038/s41598-022-18625-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 08/16/2022] [Indexed: 11/17/2022] Open
Abstract
Wheat, one of the most widely consumed staple food crops globally, is relatively vulnerable to high temperature-induced heat stress. It is therefore essential to gain more insight into the comprehensive mechanism of thermotolerance of wheat in order to safeguard its production. In view of this, we analysed heat stress responsive transcriptome data of wheat to determine its gene expression level under heat stress. A total of 7990 DEGs, including 4483 up-regulated and 3507 down regulated genes were identified. Gene Ontology (GO) analysis categorized 3910 DEGs into different ontology families. 146 pathways involving 814 DEGs were enriched during KEGG analysis. Metabolic pathways and biosynthesis of secondary metabolites were the major pathways enriched. MYB (myeloblastosis) transcription factors (TFs) and many other TFs as bHLH, WRKY, NAC, ERF, were determined to be quite abundant in the DEGs. Since various reports indicate that these TFs play important role in plants abiotic stress, it is an indication that our DEGs are functional in heat stress tolerance. Verification of few selected DEGs using RT-qPCR produced expression levels similar to the transcriptome data. This indicates that the transcriptome data is reliable. These results could be helpful in enhancing our understanding of the mechanism underlying thermotolerance in wheat.
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Affiliation(s)
- Mawuli K Azameti
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.,ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.,CSIR-Food Research Institute, Accra, Ghana
| | - Alok Ranjan
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - P K Singh
- Division of Genetics, Indian Agricultural Research Institute, Pusa, New Delhi, 110012, India
| | - Kishor Gaikwad
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Anil Kumar Singh
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Monika Dalal
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Ajay Arora
- Division of Plant Physiology, Indian Agricultural Research Institute, Pusa, New Delhi, 110012, India
| | - Vandna Rai
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Jasdeep C Padaria
- PG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India. .,ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
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Singh PK, Naithani M, Pathania M, Mirza AA, Saha S. An Insight Into the Association of Sclerostin With Insulin Sensitivity and Glycemic Parameters in Male Indian Prediabetic and Diabetic Population. Cureus 2022; 14:e27123. [PMID: 36004027 PMCID: PMC9392653 DOI: 10.7759/cureus.27123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/12/2022] [Indexed: 11/07/2022] Open
Abstract
Background Type 2 diabetes (T2D) is increasing day by day and creating a huge financial and social burden on the Indian population. Insulin resistance results in hyperglycemia, a condition that eventually causes prediabetes and Type 2 diabetes. The etiopathogenesis of T2D is still not clearly defined. Wnt signaling pathway is involved in pancreas development, islet function, insulin production, and secretion. Recent studies show that sclerostin, a Wnt signaling inhibitor, is associated with diabetes. The sclerostin level is altered as a function of race and ethnicity. However, no study has been conducted to observe the sclerostin level in prediabetic and diabetic individuals in the Indian population. Objectives The main objectives of the study are: to determine whether sclerostin is associated with glycemic parameters, serum insulin levels, insulin resistance/ sensitivity, beta-cell function, and adipose tissue insulin resistance (Adipo-IR). Methods This observational study was carried out at a tertiary care hospital, in Rishikesh, Uttarakhand, India. Individuals with T2D and prediabetes and healthy references were included in this study. Sclerostin and free fatty acids (FFA) were measured with the enzyme-linked immunosorbent assay (ELISA), and blood sugar, insulin, and glycated haemoglobin (HbA1c) were measured by the hexokinase, chemiluminescent, and chromatography methods, respectively. Messenger RNA (mRNA) was quantified by real-time polymerase chain reaction (PCR) using the SYBR Green protocol. Adipo-IR, homeostasis model assessment-estimated insulin resistance (HOMA-IR), homeostasis model assessment of β-cell function (HOMA-B), quantitative insulin sensitivity check index (QUICKI), and single point insulin sensitivity estimator (SPISE) indices were calculated. Results A total of 171 study participants were enrolled in type 2 diabetes, prediabetes, and controls groups, having 57 each in the group. There was a gradual increase in sclerostin levels from healthy [242.12(158.44)] to prediabetes [256.06(299.65)] and diabetes [465.76 (735.71)] with a significant (<0.001) difference from healthy reference. Sclerostin showed a significant positive correlation with fasting blood sugar (r=0.200; p=0.009), HbA1c (r=0.394; p<0.001) and free fatty acids (r=0.205; p=0.007) in total study participants. The SPISE index showed a significant positive correlation (r=0.269, p=0.043) in the prediabetic group. SOST, GLUT4, and insulin receptor (IR) mRNA expression all corroborate with the glycemic status. Conclusion Significantly higher expression of sclerostin (both protein and gene) in newly diagnosed T2D and prediabetes male patients, as well as significant association with SPISE index, suggest that sclerostin might be an indicator of pathophysiology related to insulin resistance, which is a characteristic feature of diabetes mellitus. However, the identification of causal relationships would warrant a large-scale prospective cohort study.
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Dubey CS, Usham AL, Mishra BK, Shukla DP, Singh PK, Singh AK. Anthropogenic arsenic menace in contaminated water near thermal power plants and coal mining areas of India. Environ Geochem Health 2022; 44:1099-1127. [PMID: 34173907 DOI: 10.1007/s10653-021-01010-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 06/09/2021] [Indexed: 06/13/2023]
Abstract
Coal mining and coal combustion in thermal power plants (TPPs) are the major anthropogenic sources of arsenic (As) contamination in many different industrial regions. In this study of industrial regions of West Bengal and Singrauli, it is observed that there is an anthropogenic contribution to the contamination from As-bearing coal. Up to 14.53 mg/kg of As is obtained in coal of West Bengal which also has very high average Fe concentration (16,095 mg/kg) along with high concentration of Cu, Mn and Hg. Similar observations are also found in Singrauli Industrial Region where 3.14 mg/kg of As with very high concentration of Fe 43,867 mg/kg along with high Cu, Mn and Hg concentration is found in coal samples. This low-grade bituminous coal contains arsenopyrite as observed by SEM-EDX. Arsenopyrite is converted to arsenolite upon combustion in these TPPs as observed in XRD. The fly ash has average As concentration of 1.53 mg/kg for West Bengal and 2.38 mg/kg for Singrauli Industrial Region and high concentration of toxic elements. The soil near these TPPs and mining areas is enriched in As, Fe, Hg, Cu and Mn. Not only As but high concentrations of Fe, Hg, Mn are also observed from analysis of water which relates to the anthropogenic inputs. The dissolution of arsenolite in reducing environments caused by periodic flooding releases As into water. Hence, the As contamination in the study area also has anthropogenic origin from coal consumption in TPPs.
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Affiliation(s)
- C S Dubey
- Faculty of Science, Sri Sri University, Cuttack, Odisha, 754006, India
| | - A L Usham
- CSIR-Central Institute of Mining and Fuel Research, Dhanbad, Jharkhand, 826015, India.
| | - B K Mishra
- Department of Mining, AKS University, Satna, Madhya Pradesh, 485001, India
| | - D P Shukla
- School of Engineering, Indian Institute of Technology Mandi, Mandi, HP, 175001, India
| | - P K Singh
- CSIR-Central Institute of Mining and Fuel Research, Dhanbad, Jharkhand, 826015, India
| | - A K Singh
- CSIR-Central Institute of Mining and Fuel Research, Dhanbad, Jharkhand, 826015, India
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Das S, Gupta C, Jain C, Rai G, Alqumber MAA, Singh PK, Sharma R, Tyagi A, Salhotra R, Narang S, Singh NP, Dar SA. Utility of serum Galactomannan in diagnosing COVID-19 patients with suspected IPA: an observational study in resource limited settings. Eur Rev Med Pharmacol Sci 2022; 26:710-714. [PMID: 35113446 DOI: 10.26355/eurrev_202201_27897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
OBJECTIVE To study the utility of Galactomannan (GM) antigen as a screening marker for diagnosing invasive pulmonary aspergillosis (IPA) in coronavirus disease 2019 (COVID-19) patients. PATIENTS AND METHODS The serum samples from patients with severe COVID-19 diseases admitted to the Critical Care Unit were collected on the 5th day of admission for GM screening. The samples were analysed by enzyme linked immune sorbent assay (ELISA) and GM index of more than 1 was considered as positive. All GM positive patients were serially followed until discharge or death. RESULTS The GM was raised in serum of 12 out of 38 patients, indicating an incidence of possible COVID-19 associated IPA (CAPA) in 31.57% of patients. The median age of these CAPA patients was 56.5 years, males were significantly more affected than females. The inflammatory marker serum ferritin was raised in all 12 patients (median value of 713.74 ng/ml), while IL-6 was raised in 9 patients (median value of 54.13 ng/ml). None of these patients received antifungals. Their median length of hospital stay was 20 days (IQR: 12, 34 days). All these patients succumbed to the illness. CONCLUSIONS The serum GM appears to be sensitive diagnostic tool to identify early IPA in COVID-19 patients and pre-emptive antifungal therapy could play a role in salvaging these patients.
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Affiliation(s)
- S Das
- Department of Microbiology, University College of Medical Sciences and Guru Teg Bahadur Hospital, Delhi, India.
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Tyagi A, Yadav P, Salhotra R, Das S, Singh PK, Garg D. Acute Kidney Injury in Severe Preeclamptic Patients Admitted to Intensive Care Unit: Epidemiology and Role of Serum Neutrophil Gelatinase-associated Lipocalcin. Indian J Crit Care Med 2021; 25:1013-1019. [PMID: 34963719 PMCID: PMC8664012 DOI: 10.5005/jp-journals-10071-23966] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Background Patients with preeclampsia admitted to the intensive care unit (ICU) may have risk factors for acute kidney injury (AKI). Although the use of neutrophil gelatinase-associated lipocalcin (NGAL) to predict AKI is previously validated, we could locate only scanty data regarding the epidemiology of AKI and role of NGAL in preeclamptic patients admitted to ICU. Methods Patients with preeclampsia admitted to our ICU were included. The incidence and severity of AKI during the entire ICU stay were assessed using kidney disease improving global outcomes criteria, while the a priori risk factors and serum NGAL were also evaluated. Results A total of 52 preeclamptic patients admitted to ICU were included, among whom the majority had eclampsia (75%). AKI developed in 25 (48.1%) patients with stages 1, 2, and 3 in 56, 36, and 8%, respectively. The incidence of sepsis (16 vs 0%), shock (40 vs 7.4%), and anemia (84 vs 59.3%) was significantly greater in patients with AKI (p < 0.05). ICU mortality (28 vs 3.7%), duration of ICU, and hospital stay were significantly higher in patients who developed AKI (p < 0.05). There was no association of serum NGAL [274 (240–335) ng/mL] with AKI or the mortality (p = 0.725, 0.861); there was, however, a significant discriminatory value for eclampsia [p = 0.019; area under curve = 0.736 (95% confidence interval: 0.569–0.904)]. Conclusions Although AKI is common among patients with preeclampsia admitted to ICU, serum NGAL does not predict its occurrence. How to cite this article Tyagi A, Yadav P, Salhotra R, Das S, Singh PK, Garg D. Acute Kidney Injury in Severe Preeclamptic Patients Admitted to Intensive Care Unit: Epidemiology and Role of Serum Neutrophil Gelatinase-associated Lipocalcin. Indian J Crit Care Med 2021;25(9):1013–1019.
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Affiliation(s)
- Asha Tyagi
- Department of Anaesthesiology and Critical Care, University College of Medical Sciences and GTB Hospital, Delhi, India
| | - Pooja Yadav
- Department of Anaesthesiology and Critical Care, University College of Medical Sciences and GTB Hospital, Delhi, India
| | - Rashmi Salhotra
- Department of Anaesthesiology and Critical Care, University College of Medical Sciences and GTB Hospital, Delhi, India
| | - Shukla Das
- Department of Microbiology, University College of Medical Sciences and GTB Hospital, Delhi, India
| | - Praveen K Singh
- Department of Microbiology, University College of Medical Sciences and GTB Hospital, Delhi, India
| | - Devansh Garg
- Department of Anaesthesiology and Critical Care, University College of Medical Sciences and GTB Hospital, Delhi, India
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Govindagoudar MB, Singh PK, Chaudhry D, Chaudhary R, Sachdeva A, Dhankhar S, Tyagi D. Burden of Silicosis among stone crushing workers in India. Occup Med (Lond) 2021; 72:366-371. [PMID: 34729596 DOI: 10.1093/occmed/kqab146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND In North India, the mining industry is disorganized and profit-driven. It predisposes its workers towards the development of silicosis. Haryana, a major North Indian state, has developed a compensation-rehabilitation policy for mining workers. AIMS This study is the review of the policy's functioning and limitation from the first 4 years of implementation. METHOD The labour department does surveillance of workers in the mining industry. All suspected cases of silicosis are evaluated by a multidisciplinary team. Based on the final diagnosis, the compensation is decided. RESULT Nearly 5000 workers were screened, and 729 appeared before the medical board. Of these 729, 465 were having silicosis, and their data are presented here (data of 7 patients were missing). All workers were males. The mean age was 44.54 ± 9.6 years, and the mean exposure (work experience) was 17.25 ± 6.7 years. Most of the workers were between the age of 40 and 50 years and had exposure for 10-20 years. Chest radiography examination showed that progressive massive fibrosis (large size type C opacities) was the most common type of presentation (23%). Smaller opacities (p, q, r and s, t, u) were combined for further analysis, given their similar prognostic significance. It was found that age and experience both had a linear and significant correlation with the severity of lung involvement. CONCLUSIONS Nearly a quarter of subjects were suffering from the worst type of lung involvement at screening itself. The policy has laid a foundation for the welfare of workers, but there is still a long way to go.
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Affiliation(s)
- M B Govindagoudar
- Department of Pulmonary & Critical Care Medicine, Pandit Bhagwat Dayal Sharma Post Graduate Institute of Medical Sciences, Rohtak, Haryana, India
| | - P K Singh
- Department of Pulmonary & Critical Care Medicine, Pandit Bhagwat Dayal Sharma Post Graduate Institute of Medical Sciences, Rohtak, Haryana, India
| | - D Chaudhry
- Department of Pulmonary & Critical Care Medicine, Pandit Bhagwat Dayal Sharma Post Graduate Institute of Medical Sciences, Rohtak, Haryana, India
| | - R Chaudhary
- Department of Labour, Industrial Health, Rohtak, Haryana, India
| | - A Sachdeva
- ESI Health Care Hospital, Faridabad, Haryana, India
| | - S Dhankhar
- Civil Hospital Gurugram, Gurugram, Haryana, India
| | - D Tyagi
- Department of Pulmonary & Critical Care Medicine, Pandit Bhagwat Dayal Sharma Post Graduate Institute of Medical Sciences, Rohtak, Haryana, India
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Pathania S, Singh PK, Narang RK, Rawal RK. Structure based designing of thiazolidinone-pyrimidine derivatives as ERK2 inhibitors: Synthesis and in vitro evaluation. SAR QSAR Environ Res 2021; 32:793-816. [PMID: 34583590 DOI: 10.1080/1062936x.2021.1973094] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
Breast cancer has been associated with an overexpression of various molecular targets; accordingly, various target-specific chemotherapeutic agents have been developed. Inhibition of ERK2, a member of MAPK pathway, is an important target involved in the treatment of both oestrogen receptor-positive and triple-negative breast cancer. Thus, in continuation of our previous work on the ERK2 target, we here report novel inhibitors of this kinase. Out of three lead molecules reported in our previous study, we selected the thiazolidinone-pyrimidine scaffold for further development of small molecule inhibitors of ERK2. Analogues of the lead molecule were docked in the target kinase, followed by molecular dynamic simulations and MM-GBSA calculations. Analogues maintaining key interactions with amino acid residues in the ATP-binding domain of ERK2 were selected and duly synthesized. In vitro biochemical evaluation of these molecules against ERK2 kinase disclosed that two molecules possess significant kinase inhibitory potential with IC50 values ≤ 0.5 µM.
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Affiliation(s)
- S Pathania
- Department of Pharmaceutical Chemistry, ISF College of Pharmacy, Moga, India
- Department of Pharmaceutical Sciences & Technology, Maharaja Ranjit Singh Punjab Technical University, Bathinda, India
| | - P K Singh
- Integrative Physiology and Pharmacology, Institute of Biomedicine, Faculty of Medicine, University of Turku, Turku, Finland
| | - R K Narang
- Department of Pharmaceutical Chemistry, ISF College of Pharmacy, Moga, India
| | - R K Rawal
- Department of Chemistry, Maharishi Markandeshwar (Deemed to Be University), Ambala, India
- CSIR-North East Institute of Science and Technology, Jorhat, India
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Ajithkumar K, Savitha AS, Mahadevakumar S, Sreenivasa MY, Naik MK, Rajanna B, Sathyanarayana R, Singh PK. A new host record for Candidatus Phytoplasma cynodontis (16Sr XIV-A) associated with phyllody and fasciation of linseed (Linum usitatissimum) from India. Lett Appl Microbiol 2021; 73:672-681. [PMID: 34545601 DOI: 10.1111/lam.13561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 09/03/2021] [Accepted: 09/08/2021] [Indexed: 11/27/2022]
Abstract
Linseed commonly called as flaxseed (Linum usitatissimum Linn.) is an important oilseed crop cultivated widely in Northern parts of Karnataka. During, 2019 (January-February), a characteristic disease was noticed with symptoms that resembled phytoplasma or like disease symptoms. The incidence was ranged from 6·5 to 16·5% in the experimental station of Raichur Agricultural University. The typical symptoms observed were virescence of floral parts, fasciation of the inflorescence axis, phyllody, stunted and flattened stem with reduced leaves. Symptomatic and healthy samples were collected and processed for molecular detection of phytoplasma. Total DNA was isolated from four infected plants and two healthy plants. The 16S rDNA region was amplified using P1/P7 followed by R16F2n/R16R2 primer pair which showed the amplification of expected amplicon size from all four infected samples. Furthermore, the SecA gene was amplified using SecA1/SecA3 primers. The PCR amplified products were subjected for direct sequencing from both directions and the consensus sequences were obtained and nBLAST search analysis revealed that the 16Sr RNA and SecA sequences were sharing maximum similarity (100%) with the reference sequence of Ca. P. cynodontis. The sequences were analysed phylogenetically by constructing a Phylogram independently by NJ method along with reference sequence of 16S rRNA region and SecA region retrieved from GenBank database showed that the phytoplasma sequence from linseed phyllody of the present study placed in a distinct clade along with reference sequence of "Ca. P. cynodontis" thus confirming the identity phylogenetically. Furthermore, iPhyClassifier and virtual RFLP proved that the phytoplasma belonged to 16SrXIV (subgroup A) phytoplasma. Previously linseed is known to be associated with 16SrII-D phytoplasma but the association of the 16SrXIV-A group of phytoplasma is not reported so far. Therefore, this is the new host record for Ca. P. cynodontis (16SrXIV-A) phytoplasma associated with linseed stem fasciation, phyllody from India.
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Affiliation(s)
- K Ajithkumar
- AICRP on Linseed, Main Agricultural Research Station, University of Agricultural Sciences, Raichur, India
| | - A S Savitha
- Department of Plant Pathology, College of Agriculture, University of Agricultural Sciences, Raichur, India
| | - S Mahadevakumar
- Applied Phytopathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru, India
| | - M Y Sreenivasa
- Phytopathology Laboratory, Department of Studies in Microbiology, University of Mysore, Manasagangotri, Mysuru, India
| | - M K Naik
- University of Agricultural and Horticultural Sciences, Shivamogga, India
| | - B Rajanna
- AICRP on Linseed, Main Agricultural Research Station, University of Agricultural Sciences, Raichur, India
| | | | - P K Singh
- CSA University of Agriculture & Technology, Kanpur, Uttar Pradesh, India
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Bond MC, Vidakovic L, Singh PK, Drescher K, Nadell CD. Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells. eLife 2021; 10:65355. [PMID: 34240700 PMCID: PMC8346279 DOI: 10.7554/elife.65355] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 07/08/2021] [Indexed: 12/19/2022] Open
Abstract
Bacteriophages can be trapped in the matrix of bacterial biofilms, such that the cells inside them are protected. It is not known whether these phages are still infectious and whether they pose a threat to newly arriving bacteria. Here, we address these questions using Escherichia coli and its lytic phage T7. Prior work has demonstrated that T7 phages are bound in the outermost curli polymer layers of the E. coli biofilm matrix. We show that these phages do remain viable and can kill colonizing cells that are T7-susceptible. If cells colonize a resident biofilm before phages do, we find that they can still be killed by phage exposure if it occurs soon thereafter. However, if colonizing cells are present on the biofilm long enough before phage exposure, they gain phage protection via envelopment within curli-producing clusters of the resident biofilm cells.
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Affiliation(s)
- Matthew C Bond
- Department of Biological Sciences, Dartmouth College, Hanover, United States
| | - Lucia Vidakovic
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Praveen K Singh
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Department of Physics, Philipps University Marburg, Marburg, Germany.,Biozentrum, University of Basel, Basel, Switzerland
| | - Carey D Nadell
- Department of Biological Sciences, Dartmouth College, Hanover, United States
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29
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Yordanov S, Neuhaus K, Hartmann R, Díaz-Pascual F, Vidakovic L, Singh PK, Drescher K. Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries. Biomed Opt Express 2021; 12:3372-3391. [PMID: 34221666 PMCID: PMC8221969 DOI: 10.1364/boe.420788] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 03/22/2021] [Accepted: 04/19/2021] [Indexed: 06/13/2023]
Abstract
Three-dimensional fluorescence-based imaging of living cells and organisms requires the sample to be exposed to substantial excitation illumination energy, typically causing phototoxicity and photobleaching. Light sheet fluorescence microscopy dramatically reduces phototoxicity, yet most implementations are limited to objective lenses with low numerical aperture and particular sample geometries that are built for specific biological systems. To overcome these limitations, we developed a single-objective light sheet fluorescence system for biological imaging based on axial plane optical microscopy and digital confocal slit detection, using either Bessel or Gaussian beam shapes. Compared to spinning disk confocal microscopy, this system displays similar optical resolution, but a significantly reduced photobleaching at the same signal level. This single-objective light sheet technique is built as an add-on module for standard research microscopes and the technique is compatible with high-numerical aperture oil immersion objectives and standard samples mounted on coverslips. We demonstrate the performance of this technique by imaging three-dimensional dynamic processes, including bacterial biofilm dispersal, the response of biofilms to osmotic shocks, and macrophage phagocytosis of bacterial cells.
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Affiliation(s)
- Stoyan Yordanov
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
- Equal contribution
| | - Konstantin Neuhaus
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Renthof 5, 35037 Marburg, Germany
- Equal contribution
| | - Raimo Hartmann
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
| | - Francisco Díaz-Pascual
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
| | - Lucia Vidakovic
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
| | - Praveen K. Singh
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, 35043 Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Renthof 5, 35037 Marburg, Germany
- Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland
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30
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Ranjan A, Pandey S, Singh CM, Kumar P, Ayub A, Tiwari L, Kumar S, Singh PK. Epidemiological and Clinical factors associated with mortality of confirmed Covid-19 cases admitted and treated in a tertiary care hospital of Patna, Bihar. Indian J Community Health 2021. [DOI: 10.47203/ijch.2021.v33i01.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Background: A significant proportion of the individuals having the illness of moderate to severe nature due to COVID-19 infection require immediate critical care. High incidence of mortality among elderly population or those with comorbid conditions were reported. Objectives: The study was carried out with objectives to assess the epidemiological and clinical factors associated with mortality among the COVID-19 cases admitted and treated in AIIMS, Patna. Methods: This was a hospital‑based cross‑sectional analytical study of epidemiological and clinical features of COVID‑19‑positive patients admitted and treated during the outbreak from March 20, to August 31, 2020. Results: The median age of COVID-19 cases was 51.5 years (IQR : 37-62 years) which was significantly higher (p-value = 0.001) as compared to females. Male-female ratio of cases was 2.88:1. Out of 1696 cases, the case-fatality rate was 309 (18.22%). The mean age of cases who died due to COVID-19 was significantly higher (p-value=0.001) as compared to those who survived. The odds of mortality was significantly higher in males as compared to females (Adjusted OR = 1.534, 95% CI = 1.10 – 2.13, p=0.011). The odds of mortality showed a significant increasing trend with increasing age (Mantel-Hanszel p-value for trend = 0.015). The covariates like gender, age groups 45-59, 60-74 and 75>=, breathlessness and CKD were found to be significantly associated with mortality after controlling for the confounders. Conclusions: Factors like gender, higher age, lower oxygen saturation causing breathlessness and chronic kidney diseases could be attributed to high risk of mortality in COVID-19 patients.
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Hartmann R, Jeckel H, Jelli E, Singh PK, Vaidya S, Bayer M, Rode DKH, Vidakovic L, Díaz-Pascual F, Fong JCN, Dragoš A, Lamprecht O, Thöming JG, Netter N, Häussler S, Nadell CD, Sourjik V, Kovács ÁT, Yildiz FH, Drescher K. Publisher Correction: Quantitative image analysis of microbial communities with BiofilmQ. Nat Microbiol 2021; 6:270. [PMID: 33420476 PMCID: PMC7840498 DOI: 10.1038/s41564-021-00863-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Raimo Hartmann
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Hannah Jeckel
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Eric Jelli
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Praveen K Singh
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Sanika Vaidya
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Miriam Bayer
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Daniel K H Rode
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Lucia Vidakovic
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | | | - Jiunn C N Fong
- Department of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA, USA
| | - Anna Dragoš
- Bacterial Interactions and Evolution Group, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Olga Lamprecht
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dubendorf, Switzerland
| | - Janne G Thöming
- Institute for Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany.,Department of Clinical Microbiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark
| | - Niklas Netter
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Susanne Häussler
- Institute for Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany.,Department of Clinical Microbiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark
| | - Carey D Nadell
- Department of Biological Sciences, Dartmouth College, Hanover, NH, USA
| | - Victor Sourjik
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Zentrum für Synthetische Mikrobiologie, SYNMIKRO, Marburg, Germany
| | - Ákos T Kovács
- Bacterial Interactions and Evolution Group, Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Fitnat H Yildiz
- Department of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA, USA
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. .,Department of Physics, Philipps-Universität Marburg, Marburg, Germany. .,Zentrum für Synthetische Mikrobiologie, SYNMIKRO, Marburg, Germany.
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Pope CE, Vo AT, Hayden HS, Weiss EJ, Durfey S, McNamara S, Ratjen A, Grogan B, Carter S, Nay L, Parsek MR, Singh PK, McKone EF, Aitken ML, Rosenfeld MR, Hoffman LR. Changes in fecal microbiota with CFTR modulator therapy: A pilot study. J Cyst Fibros 2021; 20:742-746. [PMID: 33390317 DOI: 10.1016/j.jcf.2020.12.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 11/18/2020] [Accepted: 12/03/2020] [Indexed: 11/28/2022]
Abstract
Studies have demonstrated that people with CF with pancreatic insufficiency (PI) have fecal dysbioses. Evidence suggests the causes of these dysbioses are multifactorial, and that important drivers include antibiotic exposure, dietary intake, and CF gastrointestinal tract dysfunction, including nutrient malabsorption. In this pilot study, we tested whether initiation of the CFTR modulator treatments ivacaftor (in a cohort of pancreatic sufficient (PS) people with CF and an R117H CFTR variant) or lumacaftor/ivacaftor (in a cohort of PI people with CF and an F508del variant) changed fecal measures of malabsorption or fecal microbiomes. While we identified no statistically significant fecal changes with either treatment, we detected trends in the PI cohort when initiating lumacaftor/ivacaftor towards decreased fecal fat content and towards fecal microbiomes that more closely resembled the fecal microbiota of people without PI. While these findings support a model in which nutrient malabsorption resulting from CF-induced PI drives fecal dysbiosis, they must be validated in future, larger studies of fecal microbiome and malabsorption outcomes with highly effective CFTR modulator therapies.
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Affiliation(s)
- C E Pope
- University of Washington, Seattle, USA
| | - A T Vo
- University of Washington, Seattle, USA
| | | | - E J Weiss
- University of Washington, Seattle, USA
| | - S Durfey
- University of Washington, Seattle, USA
| | | | - A Ratjen
- University of Washington, Seattle, USA
| | - B Grogan
- St. Vincent's University Hospital, Dublin, Ireland
| | - S Carter
- St. Vincent's University Hospital, Dublin, Ireland
| | - L Nay
- University of Washington, Seattle, USA
| | | | - P K Singh
- University of Washington, Seattle, USA
| | - E F McKone
- St. Vincent's University Hospital, Dublin, Ireland
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Singh PK, Paudel RC, Menezes RG. Predictability of Sex from Frontal Sinus in Nepalese Population. Kathmandu Univ Med J (KUMJ) 2021; 19:96-101. [PMID: 34812166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Background Various methods had been used for personal identification. Scientific basis of identification was initiated and progressed after 19th century which may be attributed to various scientists. With the invention of X-ray the field of identification further progressed. Modern radiological diagnostic equipments have greatly assisted in the field of forensic. Frontal sinuses are paired lobulated air cavities located posterior to superciliary arches in the frontal bone. Computed Tomography is best used to study frontal sinuses. Objective To evaluate bilateral Frontal sinus for sexual dimorphism using Computed Tomography. Method Anterior posterior length, transverse width and height of the bilateral Frontal sinus were directly measured on CT DICOM image, using Electronic Caliper in DICOM viewer software. A total 100 CT scans, 50 of each sex were collected was analysed using SPSS-20 in present study. Result The mean age distribution for male is 34.74±8.66, and for females 35.34±8.88. The mean of all the measurements take was larger in males in comparison to females with p < 0.00. The paired t test showed left side is larger than right. The discriminant function showed high significance for each measurement and also when all the measurements were combined. Conclusion Though the study being unique for Nepalese population, caution should be taken when frontal sinus is used as the only parameter. However in combination with other morphometric data is advised.
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Affiliation(s)
- P K Singh
- Department of Forensic Medicine, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu University School of Medical Sciences, Dhulikhel, Kavre, Nepal
| | - R C Paudel
- Department of Radiodiagnosis and Imaging, Dhulikhel Hospital, Kathmandu University Hospital, Kathmandu University School of Medical Sciences, Dhulikhel, Kavre, Nepal
| | - R G Menezes
- Forensic Medicine Division, College of Medicine, University of Dammam, Dammam, Saudi Arabia
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Maestre-Reyna M, Huang WC, Wu WJ, Singh PK, Hartmann R, Wang PH, Lee CC, Hikima T, Yamamoto M, Bessho Y, Drescher K, Tsai MD, Wang AHJ. Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate-dependent autoproteolysis activity. IUBMB Life 2020; 73:418-431. [PMID: 33372380 PMCID: PMC7898620 DOI: 10.1002/iub.2439] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 12/07/2020] [Accepted: 12/15/2020] [Indexed: 12/19/2022]
Abstract
Vibrio cholerae is the causative agent of the diarrheal disease cholera, for which biofilm communities are considered to be environmental reservoirs. In endemic regions, and after algal blooms, which may result from phosphate enrichment following agricultural runoff, the bacterium is released from biofilms resulting in seasonal disease outbreaks. However, the molecular mechanism by which V. cholerae senses its environment and switches lifestyles from the biofilm‐bound state to the planktonic state is largely unknown. Here, we report that the major biofilm scaffolding protein RbmA undergoes autocatalytic proteolysis via a phosphate‐dependent induced proximity activation mechanism. Furthermore, we show that RbmA mutants that are defective in autoproteolysis cause V. cholerae biofilms to grow larger and mechanically stronger, correlating well with the observation that RbmA stability directly affects microbial community homeostasis and rheological properties. In conclusion, our biophysical study characterizes a novel phosphate‐dependent breakdown pathway of RbmA, while microbiological data suggest a new, sensory role of this biofilm scaffolding element.
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Affiliation(s)
| | - Wei-Cheng Huang
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.,RIKEN SPring-8 Center, Sayo, Japan
| | - Wen-Jin Wu
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan
| | - Praveen K Singh
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Raimo Hartmann
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Po-Hsun Wang
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan
| | - Cheng-Chung Lee
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan
| | | | | | - Yoshitaka Bessho
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.,RIKEN SPring-8 Center, Sayo, Japan
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.,Department of Physics, Philipps University Marburg, Marburg, Germany
| | - Ming-Daw Tsai
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan
| | - Andrew H-J Wang
- Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan
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Peschek N, Herzog R, Singh PK, Sprenger M, Meyer F, Fröhlich KS, Schröger L, Bramkamp M, Drescher K, Papenfort K. RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae. Nat Commun 2020; 11:6067. [PMID: 33247102 PMCID: PMC7695739 DOI: 10.1038/s41467-020-19890-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Accepted: 11/06/2020] [Indexed: 02/06/2023] Open
Abstract
Vibrio cholerae, the cause of cholera disease, exhibits a characteristic curved rod morphology, which promotes infectivity and motility in dense hydrogels. Periplasmic protein CrvA determines cell curvature in V. cholerae, yet the regulatory factors controlling CrvA are unknown. Here, we discover the VadR small RNA (sRNA) as a post-transcriptional inhibitor of the crvA mRNA. Mutation of vadR increases cell curvature, whereas overexpression has the inverse effect. We show that vadR transcription is activated by the VxrAB two-component system and triggered by cell-wall-targeting antibiotics. V. cholerae cells failing to repress crvA by VadR display decreased survival upon challenge with penicillin G indicating that cell shape maintenance by the sRNA is critical for antibiotic resistance. VadR also blocks the expression of various key biofilm genes and thereby inhibits biofilm formation in V. cholerae. Thus, VadR is an important regulator for synchronizing peptidoglycan integrity, cell shape, and biofilm formation in V. cholerae.
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Affiliation(s)
- Nikolai Peschek
- Institute of Microbiology, Friedrich Schiller University, 07745, Jena, Germany
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany
| | - Roman Herzog
- Institute of Microbiology, Friedrich Schiller University, 07745, Jena, Germany
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany
| | - Praveen K Singh
- Max Planck Institute for Terrestrial Microbiology, 35043, Marburg, Germany
| | - Marcel Sprenger
- Institute of Microbiology, Friedrich Schiller University, 07745, Jena, Germany
| | - Fabian Meyer
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany
- Institute for General Microbiology, Christian-Albrechts-University, Kiel, Germany
| | - Kathrin S Fröhlich
- Institute of Microbiology, Friedrich Schiller University, 07745, Jena, Germany
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany
- Microverse Cluster, Friedrich Schiller University Jena, 07743, Jena, Germany
| | - Luise Schröger
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany
| | - Marc Bramkamp
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany
- Institute for General Microbiology, Christian-Albrechts-University, Kiel, Germany
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, 35043, Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, 35032, Marburg, Germany
| | - Kai Papenfort
- Institute of Microbiology, Friedrich Schiller University, 07745, Jena, Germany.
- Faculty of Biology, Ludwig-Maximilians-University of Munich, 82152, Martinsried, Germany.
- Microverse Cluster, Friedrich Schiller University Jena, 07743, Jena, Germany.
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Rode DK, Singh PK, Drescher K. Multicellular and unicellular responses of microbial biofilms to stress. Biol Chem 2020; 401:1365-1374. [DOI: 10.1515/hsz-2020-0213] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 09/11/2020] [Indexed: 12/28/2022]
Abstract
AbstractBiofilms are a ubiquitous mode of microbial life and display an increased tolerance to different stresses. Inside biofilms, cells may experience both externally applied stresses and internal stresses that emerge as a result of growth in spatially structured communities. In this review, we discuss the spatial scales of different stresses in the context of biofilms, and if cells in biofilms respond to these stresses as a collection of individual cells, or if there are multicellular properties associated with the response. Understanding the organizational level of stress responses in microbial communities can help to clarify multicellular functions of biofilms.
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Affiliation(s)
- Daniel K.H. Rode
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 16, D-35043 Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Karl-von-Frisch-Str. 16, D-35043 Marburg, Germany
| | - Praveen K. Singh
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 16, D-35043 Marburg, Germany
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 16, D-35043 Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Karl-von-Frisch-Str. 16, D-35043 Marburg, Germany
- SYNMIKRO Center for Synthetic Microbiology, Karl-von-Frisch-Str. 16, D-35043 Marburg, Germany
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Singh PK, Serrano E, Ramachandran G, Miguel-Arribas A, Gago-Cordoba C, Val-Calvo J, López-Pérez A, Alfonso C, Wu LJ, Luque-Ortega JR, Meijer WJJ. Reversible regulation of conjugation of Bacillus subtilis plasmid pLS20 by the quorum sensing peptide responsive anti-repressor RappLS20. Nucleic Acids Res 2020; 48:10785-10801. [PMID: 33045732 PMCID: PMC7641744 DOI: 10.1093/nar/gkaa797] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 09/02/2020] [Accepted: 09/14/2020] [Indexed: 12/15/2022] Open
Abstract
Quorum sensing plays crucial roles in bacterial communication including in the process of conjugation, which has large economical and health-related impacts by spreading antibiotic resistance. The conjugative Bacillus subtilis plasmid pLS20 uses quorum sensing to determine when to activate the conjugation genes. The main conjugation promoter, Pc, is by default repressed by a regulator RcopLS20 involving DNA looping. A plasmid-encoded signalling peptide, Phr*pLS20, inactivates the anti-repressor of RcopLS20, named RappLS20, which belongs to the large group of RRNPP family of regulatory proteins. Here we show that DNA looping occurs through interactions between two RcopLS20 tetramers, each bound to an operator site. We determined the relative promoter strengths for all the promoters involved in synthesizing the regulatory proteins of the conjugation genes, and constructed an in vivo system uncoupling these regulatory genes to show that RappLS20 is sufficient for activating conjugation in vivo. We also show that RappLS20 actively detaches RcopLS20 from DNA by preferentially acting on the RcopLS20 molecules involved in DNA looping, resulting in sequestration but not inactivation of RcopLS20. Finally, results presented here in combination with our previous results show that activation of conjugation inhibits competence and competence development inhibits conjugation, indicating that both processes are mutually exclusive.
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Affiliation(s)
- Praveen K Singh
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Ester Serrano
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Gayetri Ramachandran
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Andrés Miguel-Arribas
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - César Gago-Cordoba
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Jorge Val-Calvo
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Arancha López-Pérez
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Carlos Alfonso
- Centro de Investigaciones Biológicas Margarita Salas (CSIC), C. Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - Ling Juan Wu
- Centre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK
| | - Juan R Luque-Ortega
- Molecular Interactions Facility, Centro de Investigaciones Biológicas Margarita Salas (CSIC), C. Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - Wilfried J J Meijer
- Centro de Biología Molecular "Severo Ochoa'' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
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Gaurav V, Bhattacharya SN, Sharma N, Datt S, Kumar P, Rai G, Singh PK, Taneja B, Das S. Terbinafine resistance in dermatophytes: Time to revisit alternate antifungal therapy. J Mycol Med 2020; 31:101087. [PMID: 33360137 DOI: 10.1016/j.mycmed.2020.101087] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 08/21/2020] [Accepted: 11/17/2020] [Indexed: 01/13/2023]
Abstract
Resistant superficial dermatophytic infections of the skin and its appendages have emerged as a major health problem in India. Mutations in Squalene epoxidase gene have led to increasing incidence of resistance to terbinafine in dermatophytic isolates. We examined six patients with recalcitrant dermatophytosis attending Dermatology OPD at a tertiary care hospital and demonstrated terbinafine resistance by molecular method. Immediate hyperitivity (IH) reaction to Trichophytin antigen was highlighted in these patients. The patients were treated with alternate antifungals after demonstration of resistance to terbinafine based on the antifungal susceptibility testing (AFST). On follow up the patients responded well to the substitute but the duration of therapy had to be prolonged beyond six weeks.
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Affiliation(s)
- V Gaurav
- Department of Dermatology & STD, University College of Medical Sciences (University of Delhi) and GTB Hospital, Delhi, India
| | - S N Bhattacharya
- Department of Dermatology & STD, University College of Medical Sciences (University of Delhi) and GTB Hospital, Delhi, India
| | - N Sharma
- Department of Microbiology, University College of Medical Sciences, Delhi 110095, India
| | - S Datt
- Department of Microbiology, University College of Medical Sciences, Delhi 110095, India
| | - P Kumar
- Genome Informatics and Structural Biology Unit, CSIR-IGIB, Sukhdev Vihar, Mathura Road, New Delhi 110020, India
| | - G Rai
- Department of Microbiology, University College of Medical Sciences, Delhi 110095, India
| | - P K Singh
- Department of Microbiology, University College of Medical Sciences, Delhi 110095, India
| | - B Taneja
- Genome Informatics and Structural Biology Unit, CSIR-IGIB, Sukhdev Vihar, Mathura Road, New Delhi 110020, India
| | - S Das
- Department of Microbiology, University College of Medical Sciences, Delhi 110095, India.
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Vignesh U, Mehrotra D, Bhave SM, Singh PK. Quality of life after distraction osteogenesis in TMJ ankylosis patients. Oral Surg Oral Med Oral Pathol Oral Radiol 2020; 131:295-303. [PMID: 33187947 DOI: 10.1016/j.oooo.2020.09.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Revised: 06/29/2020] [Accepted: 09/07/2020] [Indexed: 11/30/2022]
Abstract
OBJECTIVE The aim of our study was to evaluate the success of distraction osteogenesis in temporomandibular joint (TMJ) ankylosis patients with facial deformities at our maxillofacial unit; assess the psychosocial and well-being outcomes of distraction osteogenesis and its impact on oral health; and discriminate the differences in quality of life (QoL) with application of external or internal devices, unilateral or bilateral, linear or multivector, and maxillomandibular or mandibular distraction. STUDY DESIGN QoL and the Oral Health Impact Profile (OHIP) were prospectively studied in 42 consecutive patients with facial deformities, planned for maxillofacial distraction osteogenesis, using 2 validated questionnaires, the Orthognathic Quality of Life Questionnaire and OHIP-14. Patients who had undergone any previous surgeries were excluded. RESULTS Among these patients, 16 were female, 26 male; mean age was 14.98 ± 4.88 years, and all had prearthroplastic distraction. The shortening in the mandible was in the proportion 29:01:12 in the body, ramus, and ramus-body, respectively. Mean QoL scores before and after distraction were 68.52 ± 9.50 and 26.62 ± 3.51; and mean OHIP scores before and after distraction were 33.88 ± 6.26 and 15.36 ± 2.54, a highly significant difference (P < .001) suggesting improvement. Significant improvement was identified on all QoL and OHIP questions after distraction (P < .01). The postdistraction overall mean QoL score among patients with extraoral or intraoral distractor did not have a significant difference (P = .32), but facial appearance in the bilateral distraction group; jaw function and overall well-being in the multivector distraction group; and facial appearance, jaw function, and overall well-being in maxillomandibular distraction group had significant improvements (P < .05). CONCLUSIONS Distraction osteogenesis considerably improves oral health and health-related QoL in patients with TMJ ankylosis with facial deformities. The use of an external or internal distractor did not make any difference in the QoL; however, bilateral distraction, multivector distraction, and maxillomandibular distraction resulted in better QoL outcomes.
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Affiliation(s)
- Uthirapathy Vignesh
- Senior Resident, Department of Oral and Maxillofacial Surgery, King George's Medical University, Lucknow, India
| | - Divya Mehrotra
- Professor, Department of Oral & Maxillofacial Surgery, King George Medical University, Lucknow, India.
| | - Sujay Milind Bhave
- Junior Resident, Department of Oral & Maxillofacial Surgery, King George Medical University, Lucknow, India
| | - Praveen K Singh
- Junior Resident, Department of Oral & Maxillofacial Surgery, King George Medical University, Lucknow, India
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Crespo I, Bernardo N, Miguel-Arribas A, Singh PK, Luque-Ortega JR, Alfonso C, Malfois M, Meijer WJJ, Boer DR. Inactivation of the dimeric RappLS20 anti-repressor of the conjugation operon is mediated by peptide-induced tetramerization. Nucleic Acids Res 2020; 48:8113-8127. [PMID: 32658272 PMCID: PMC7430634 DOI: 10.1093/nar/gkaa540] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 06/08/2020] [Accepted: 06/15/2020] [Indexed: 12/21/2022] Open
Abstract
Quorum sensing allows bacterial cells to communicate through the release of soluble signaling molecules into the surrounding medium. It plays a pivotal role in controlling bacterial conjugation in Gram-positive cells, a process that has tremendous impact on health. Intracellular regulatory proteins of the RRNPP family are common targets of these signaling molecules. The RRNPP family of gene regulators bind signaling molecules at their C-terminal domain (CTD), but have highly divergent functionalities at their N-terminal effector domains (NTD). This divergence is also reflected in the functional states of the proteins, and is highly interesting from an evolutionary perspective. RappLS20 is an RRNPP encoded on the Bacillus subtilis plasmid pLS20. It relieves the gene repression effectuated by RcopLS20 in the absence of the mature pLS20 signaling peptide Phr*pLS20. We report here an in-depth structural study of apo and Phr*pLS20-bound states of RappLS20 at various levels of atomic detail. We show that apo-RappLS20 is dimeric and that Phr*pLS20-bound Rap forms NTD-mediated tetramers. In addition, we show that RappLS20 binds RcopLS20 directly in the absence of Phr*pLS20 and that addition of Phr*pLS20 releases RcopLS20 from RappLS20. This allows RcopLS20 to bind the promotor region of crucial conjugation genes blocking their expression.
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Affiliation(s)
- Isidro Crespo
- ALBA Synchrotron Light Source, C. de la Llum 2-26, Cerdanyola del Vallès, 08290 Barcelona, Spain
| | - Nerea Bernardo
- ALBA Synchrotron Light Source, C. de la Llum 2-26, Cerdanyola del Vallès, 08290 Barcelona, Spain
| | - Andrés Miguel-Arribas
- Centro de Biología Molecular 'Severo Ochoa' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Praveen K Singh
- Centro de Biología Molecular 'Severo Ochoa' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Juan R Luque-Ortega
- Molecular Interactions Facility, Centro de Investigaciones Biológicas Margarita Salas (CSIC), C. Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - Carlos Alfonso
- Systems Biochemistry of Bacterial Division Lab, Centro de Investigaciones Biológicas Margarita Salas (CSIC), C. Ramiro de Maeztu 9, 28040 Madrid, Spain
| | - Marc Malfois
- ALBA Synchrotron Light Source, C. de la Llum 2-26, Cerdanyola del Vallès, 08290 Barcelona, Spain
| | - Wilfried J J Meijer
- Centro de Biología Molecular 'Severo Ochoa' (CSIC-UAM), C. Nicolás Cabrera 1, Universidad Autónoma, Canto Blanco, 28049 Madrid, Spain
| | - Dirk Roeland Boer
- ALBA Synchrotron Light Source, C. de la Llum 2-26, Cerdanyola del Vallès, 08290 Barcelona, Spain
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Fergusson JR, Wallace Z, Connolly MM, Woon AP, Suckling RJ, Hine DW, Barber C, Bunjobpol W, Choi B, Crespillo S, Dembek M, Dieckmann N, Donoso J, Godinho LF, Grant T, Howe D, McCully ML, Perot C, Sarkar A, Seifert FU, Singh PK, Stegmann KA, Turner B, Verma A, Walker A, Leonard S, Maini MK, Wiederhold K, Dorrell L, Simmons R, Knox A. Immune-Mobilizing Monoclonal T Cell Receptors Mediate Specific and Rapid Elimination of Hepatitis B-Infected Cells. Hepatology 2020; 72:1528-1540. [PMID: 32770836 PMCID: PMC7702151 DOI: 10.1002/hep.31503] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 06/17/2020] [Accepted: 07/01/2020] [Indexed: 12/20/2022]
Abstract
BACKGROUND AND AIMS Therapies for chronic hepatitis B virus (HBV) infection are urgently needed because of viral integration, persistence of viral antigen expression, inadequate HBV-specific immune responses, and treatment regimens that require lifelong adherence to suppress the virus. Immune mobilizing monoclonal T Cell receptors against virus (ImmTAV) molecules represent a therapeutic strategy combining an affinity-enhanced T Cell receptor with an anti-CD3 T Cell-activating moiety. This bispecific fusion protein redirects T cells to specifically lyse infected cells expressing the target virus-derived peptides presented by human leukocyte antigen (HLA). APPROACH AND RESULTS ImmTAV molecules specific for HLA-A*02:01-restricted epitopes from HBV envelope, polymerase, and core antigens were engineered. The ability of ImmTAV-Env to activate and redirect polyclonal T cells toward cells containing integrated HBV and cells infected with HBV was assessed using cytokine secretion assays and imaging-based killing assays. Elimination of infected cells was further quantified using a modified fluorescent hybridization of viral RNA assay. Here, we demonstrate that picomolar concentrations of ImmTAV-Env can redirect T cells from healthy and HBV-infected donors toward hepatocellular carcinoma (HCC) cells containing integrated HBV DNA resulting in cytokine release, which could be suppressed by the addition of a corticosteroid in vitro. Importantly, ImmTAV-Env redirection of T cells induced cytolysis of antigen-positive HCC cells and cells infected with HBV in vitro, causing a reduction of hepatitis B e antigen and specific loss of cells expressing viral RNA. CONCLUSIONS The ImmTAV platform has the potential to enable the elimination of infected cells by redirecting endogenous non-HBV-specific T cells, bypassing exhausted HBV-specific T cells. This represents a promising therapeutic option in the treatment of chronic hepatitis B, with our lead candidate now entering trials.
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MESH Headings
- Antibodies, Monoclonal/genetics
- Antibodies, Monoclonal/immunology
- Antibodies, Monoclonal/pharmacology
- Antibodies, Monoclonal/therapeutic use
- CD3 Complex/antagonists & inhibitors
- Cell Line, Tumor
- Epitopes/immunology
- HLA-A2 Antigen/immunology
- Hepatitis B Surface Antigens/immunology
- Hepatitis B virus/immunology
- Hepatitis B virus/isolation & purification
- Hepatitis B, Chronic/drug therapy
- Hepatitis B, Chronic/immunology
- Hepatitis B, Chronic/virology
- Hepatocytes
- Humans
- Immunoconjugates/genetics
- Immunoconjugates/immunology
- Immunoconjugates/pharmacology
- Immunoconjugates/therapeutic use
- Lymphocyte Activation/drug effects
- Primary Cell Culture
- Receptors, Antigen, T-Cell/genetics
- Receptors, Antigen, T-Cell/immunology
- Receptors, Antigen, T-Cell/therapeutic use
- Recombinant Fusion Proteins/genetics
- Recombinant Fusion Proteins/immunology
- Recombinant Fusion Proteins/pharmacology
- Recombinant Fusion Proteins/therapeutic use
- T-Lymphocytes/drug effects
- T-Lymphocytes/immunology
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Dawn Howe
- Immunocore LtdAbingdonUnited Kingdom
| | | | | | | | | | | | - Kerstin A. Stegmann
- Division of Infection and ImmunityInstitute of Immunity and TransplantationUniversity College LondonLondonUnited Kingdom
| | | | | | | | | | - Mala K. Maini
- Division of Infection and ImmunityInstitute of Immunity and TransplantationUniversity College LondonLondonUnited Kingdom
| | | | - Lucy Dorrell
- Immunocore LtdAbingdonUnited Kingdom
- Nuffield Department of MedicineUniversity of OxfordOxfordUnited Kingdom
- Oxford NIHR Biomedical Research CentreUniversity of OxfordOxfordUnited Kingdom
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Ter-Avetisyan S, Singh PK, Lécz Z, Govras E, Bychenkov VY. Bunching of light ions driven by heavy-ion front in multispecies ion beam accelerated by laser. Phys Rev E 2020; 102:023212. [PMID: 32942449 DOI: 10.1103/physreve.102.023212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2020] [Accepted: 08/06/2020] [Indexed: 11/07/2022]
Abstract
Deeply modulated ion spectra from contaminants present on the target surface were measured at the interaction of ultraintense (2-5)×10^{20}W/cm^{2} and high-contrast laser pulses (≲10^{-10}) with thin (∼μm) and ultrathin (∼nm) targets. This phenomenon, observed over a wide range of laser and target parameters, suggests that it is a generic feature of multispecies ion acceleration at high laser pulse contrast. The modulation is ascribed to the acceleration of various ion species at the rear of the target with steplike density profiles which provide well-separated ion species in the accelerated beam. The observed coincidence of the velocity of the modulated region in the ion spectra with the maximum velocity of another ion with a lower mass-to-charge ratio is consistent with this model. The impact of heavy ions on light ions leads to a spectral "bunching" of light ions. Two-dimensional modeling has shown that high laser contrast prevents backside plasma expansion, which provides a well separated ion species with a steplike density profile that allows for the additional acceleration of "light" ions by the slower moving "heavy"-ion front. Spectral modulations can be controlled by tuning the ratio of heavy to light ions in future experiments with ultrathin rear coatings.
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Affiliation(s)
- S Ter-Avetisyan
- Institute for Applications of High Intensity Lasers in Nuclear Physics, University of Szeged, Szeged 6720, Hungary
| | - P K Singh
- Center for Relativistic Laser Science, Institute of Basic Science, Gwangju 61005, South Korea
| | - Zs Lécz
- ELI-ALPS, Szeged 6728, Hungary
| | - E Govras
- Russian Federal Nuclear Center-All-Russian Research Institute of Technical Physics (RFNC-VNIITF), Snezhinsk, 456770, Russia
| | - V Yu Bychenkov
- P. N. Lebedev Physics Institute, Russian Academy of Sciences, Moscow 119991, Russia.,Center for Fundamental & Applied Research, VNIIA, ROSATOM, Moscow 127055, Russia
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Schwechheimer C, Hebert K, Tripathi S, Singh PK, Floyd KA, Brown ER, Porcella ME, Osorio J, Kiblen JTM, Pagliai FA, Drescher K, Rubin SM, Yildiz FH. A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae. PLoS Pathog 2020; 16:e1008745. [PMID: 32841296 PMCID: PMC7485978 DOI: 10.1371/journal.ppat.1008745] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 09/11/2020] [Accepted: 06/25/2020] [Indexed: 11/19/2022] Open
Abstract
Production of an extracellular matrix is essential for biofilm formation, as this matrix both secures and protects the cells it encases. Mechanisms underlying production and assembly of matrices are poorly understood. Vibrio cholerae, relies heavily on biofilm formation for survival, infectivity, and transmission. Biofilm formation requires Vibrio polysaccharide (VPS), which is produced by vps gene-products, yet the function of these products remains unknown. Here, we demonstrate that the vps gene-products vpsO and vpsU encode respectively for a tyrosine kinase and a cognate tyrosine phosphatase. Collectively, VpsO and VpsU act as a tyrosine phosphoregulatory system to modulate VPS production. We present structures of VpsU and the kinase domain of VpsO, and we report observed autocatalytic tyrosine phosphorylation of the VpsO C-terminal tail. The position and amount of tyrosine phosphorylation in the VpsO C-terminal tail represses VPS production and biofilm formation through a mechanism involving the modulation of VpsO oligomerization. We found that tyrosine phosphorylation enhances stability of VpsO. Regulation of VpsO phosphorylation by the phosphatase VpsU is vital for maintaining native VPS levels. This study provides new insights into the mechanism and regulation of VPS production and establishes general principles of biofilm matrix production and its inhibition. The biofilm life style protects microbes from a plethora of harm, to increase their survival and pathogenicity. Exopolysaccharides are the essential glue of the microbial biofilm matrix, and loss of this glue negates biofilm formation and renders cells more sensitive to antimicrobial agents. Here, we show that a tyrosine phosphoregulatory system controls the biosynthesis and abundance of Vibrio exopolysaccharide (VPS), an essential biofilm component of the pathogen Vibrio cholerae. The phosphorylation state of the tyrosine autokinase VpsO, mediated by the tyrosine phosphatase VpsU, directly modulates VPS production and also affects the kinase’s own degradation, to regulate VPS production. This study provides new insights into the mechanisms of V. cholerae biofilm formation and consequently ways to combat pathogens more broadly, due to conservation of tyrosine phosphoregulatory systems among exopolysaccharide producing bacteria.
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Affiliation(s)
- Carmen Schwechheimer
- Department of Microbiology and Environmental Toxicology, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Kassidy Hebert
- Department of Microbiology and Environmental Toxicology, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Sarvind Tripathi
- Department of Chemistry and Biochemistry, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Praveen K. Singh
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Kyle A. Floyd
- Department of Microbiology and Environmental Toxicology, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Elise R. Brown
- Department of Chemistry and Biochemistry, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Monique E. Porcella
- Department of Chemistry and Biochemistry, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Jacqueline Osorio
- Department of Chemistry and Biochemistry, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Joseph T. M. Kiblen
- Department of Microbiology and Environmental Toxicology, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Fernando A. Pagliai
- Department of Microbiology and Environmental Toxicology, University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Seth M. Rubin
- Department of Chemistry and Biochemistry, University of California—Santa Cruz, Santa Cruz, California, United States of America
- * E-mail: (SMR), (FHY)
| | - Fitnat H. Yildiz
- Department of Microbiology and Environmental Toxicology, University of California—Santa Cruz, Santa Cruz, California, United States of America
- * E-mail: (SMR), (FHY)
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44
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Sharma R, Ahlawat S, Sharma H, Bhagat RL, Singh PK, Tantia MS. Identification of a new potential native Indian cattle breed by population differentiation based on microsatellite markers. Mol Biol Rep 2020; 47:6429-6434. [PMID: 32666440 DOI: 10.1007/s11033-020-05639-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 07/01/2020] [Indexed: 11/25/2022]
Abstract
India has a rich heritage of rearing cattle where farmers selected native cattle suitable to their local agro-ecological conditions for centuries. It is reflected in 50 indigenous breeds of cattle, besides many lesser known populations not explored so far. It is the need of the hour to characterize such populations to have prudent improvement and conservation options. Thus, present study was carried out to assess the genetic diversity and relationship between an unexplored local cattle population (Kathani) and four established cattle breeds of adjoining area (Gaolao, Kosali, Ongole and Motu) by using 20 FAO recommended microsatellite markers. High variability was recorded in the Kathani population with a total of 198 alleles that varied between 5 (ILSTS11, TGLA22, INRA05) and 17 (ILSTS34) with a mean of 9.9 ± 0.73. The average observed heterozygosity (Ho) was 0.658 ± 0.054. Heterozygote deficiency was not significant (FIS = 0.029 ± 0.063) indicating random mating prevalent across this population. Mean estimates of observed number of alleles and heterozygosity over all the loci and five populations were 9.73 ± 0.421 and 0.617 ± 0.022, respectively. In the overall populations, the homozygote excess (FIT) of 0.293 ± 0.032, was partly due to the homozygote excess within breeds (FIS = 0.121 ± 0.025) and to a larger extent due to high (0.05 < FST < 0.15) genetic differentiation among them (FST = 0.195 ± 0.029). Substantial pairwise Nei's genetic distance and high population differentiation indicated towards separate genetic identity of Kathani cattle. The analysis of genetic structure based on Bayesian approach indicated that the most probable number of clusters is five confirming definitive genetic differentiation among all the popultions. Entire analysis showed that a significant amount of genetic variation is maintained in Kathani, a lesser known cattle population that is distinct from the recognized breeds in the proximity. As this autochthonous cattle plays role in the economic sustainability of a marginal and disadvantaged area, it is important to preserve and develop its breeding.
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Affiliation(s)
- Rekha Sharma
- ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana, 132 001, India.
| | - Sonika Ahlawat
- ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana, 132 001, India
| | - Himani Sharma
- ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana, 132 001, India
| | - R L Bhagat
- BAIF, Uruli Kanchan, Maharashtra, 412 202, India
| | - P K Singh
- ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana, 132 001, India
| | - M S Tantia
- ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana, 132 001, India
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45
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Singh A, Singh Y, Mahato AK, Jayaswal PK, Singh S, Singh R, Yadav N, Singh AK, Singh PK, Singh R, Kumar R, Septiningsih EM, Balyan HS, Singh NK, Rai V. Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance. Sci Rep 2020; 10:8621. [PMID: 32451398 PMCID: PMC7248102 DOI: 10.1038/s41598-020-65588-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Accepted: 04/28/2020] [Indexed: 11/24/2022] Open
Abstract
Erratic rainfall leading to flash flooding causes huge yield losses in lowland rice. The traditional varieties and landraces of rice possess variable levels of tolerance to submergence stress, but gene discovery and utilization of these resources has been limited to the Sub1A-1 allele from variety FR13A. Therefore, we analysed the allelic sequence variation in three Sub1 genes in a panel of 179 rice genotypes and its association with submergence tolerance. Population structure and diversity analysis based on a 36-plex genome wide genic-SNP assay grouped these genotypes into two major categories representing Indica and Japonica cultivar groups with further sub-groupings into Indica, Aus, Deepwater and Aromatic-Japonica cultivars. Targetted re-sequencing of the Sub1A, Sub1B and Sub1C genes identfied 7, 7 and 38 SNPs making 8, 9 and 67 SNP haplotypes, respectively. Haplotype networks and phylogenic analysis revealed evolution of Sub1B and Sub1A genes by tandem duplication and divergence of the ancestral Sub1C gene in that order. The alleles of Sub1 genes in tolerant reference variety FR13A seem to have evolved most recently. However, no consistent association could be found between the Sub1 allelic variation and submergence tolerance probably due to low minor allele frequencies and presence of exceptions to the known Sub1A-1 association in the genotype panel. We identified 18 cultivars with non-Sub1A-1 source of submergence tolerance which after further mapping and validation in bi-parental populations will be useful for development of superior flood tolerant rice cultivars.
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Affiliation(s)
- Anuradha Singh
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
- International Rice Research Institute, DAPO 7777, Metro Manila, Philippines
- Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, India
| | - Yashi Singh
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - Ajay K Mahato
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - Pawan K Jayaswal
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - Sangeeta Singh
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - Renu Singh
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - Neera Yadav
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - A K Singh
- Department of Crop Physiology, Narendra Deo University of Agriculture & Technology, Ayodhya, UP, India
| | - P K Singh
- Department of Genetics and Plant Breeding, Banaras Hindu University, Varanasi, India
| | - Rakesh Singh
- ICAR-National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi, India
| | - Rajesh Kumar
- Department of Genetics and Plant Breeding, Dr. Rajendra Prasad Central Agricultural University, Samastipur, Bihar, India
| | - Endang M Septiningsih
- International Rice Research Institute, DAPO 7777, Metro Manila, Philippines
- Department of Soil and Crop Sciences, Texas A & M University, TX, 77843, USA
| | - H S Balyan
- Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, India
| | - Nagendra K Singh
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India
| | - Vandna Rai
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India.
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Agrawal D, Chandra PS, Singh PK, Meena R, Doddamani R, Jagdevan A, Mishra S, Garg K. Cost-Effective Home Mechanical Ventilation in Neurosurgery Patients: Case Series of Three Patients. J Neurosci Rural Pract 2020; 11:329-332. [PMID: 32367989 PMCID: PMC7195951 DOI: 10.1055/s-0040-1709256] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Background
Neurological patients who are ventilator-dependent occupy scarce beds in the hospitals for prolonged periods of time. Most, if not all, can be discharged on home mechanical ventilation (HMV). However, due to lack of insurance and state support, it remains prohibitively expensive for the vast majority of those who require it most.
Materials and Methods
The authors discuss three patients admitted in the Department of Neurosurgery between January and August 2019, who were discharged on HMV after remaining on ventilator support for prolonged period in the hospital. Each patient was discharged with two units (one as standby) of AgVa home ventilator (AgVa Healthcare; New Delhi, India), one Ambu-bag, one pulse oximeter, and one backup power supply unit capable of supplying power to ventilator for a minimum of 24 hours. All the equipment were given free-of-cost through donations by hospital staffs and other donors. All patients were followed up telephonically from their homes and the incidence of complications, ventilator malfunction, and additional cost of HMV on the families were ascertained.
Observation and Results
Of the three patients, two were male and one female. Age ranged from 12 to 17 years. The duration of in-hospital ventilator support prior to discharge on HMV varied from 1 to 5 years. There was no insurance cover available for any of the patients with all expenses being “out of pocket.” The equipment cost Indian Rupees (INR) 115,700 (USD 1,615: two units of AgVa home ventilator costing INR 100,000 [USD 1,396], one Ambu-bag costing INR 1,100 [USD 15], one pulse oximeter costing INR 1,600 [USD 22], and one backup power supply unit costing INR 13,000 [USD 182]). Discharge on HMV was planned on specific request from patients’ families and informed consent was taken from all. All patients had tracheostomies. Mode of HMV was pressure support ventilation in all. Telephonic follow-up ranged from 1 to 7 months. The cost of disposables was INR 100 per month (USD 0.7) for all the patients. No complications occurred in any patient. There was no incidence of ventilator-associated pneumonia (VAP) or ventilator malfunction.
Conclusions
Availability of cost-effective indigenous ventilator like AgVa home has made HMV possible, even for poor patients with neurological diseases, and has the potential to improve quality of life, decrease VAP rates, and free up scarce ventilator beds in hospitals. Longer-term follow-up in larger number of patients will improve the data on safety and feasibility in developing countries like India.
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Affiliation(s)
- Deepak Agrawal
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - P S Chandra
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - P K Singh
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - R Meena
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - R Doddamani
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - A Jagdevan
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - S Mishra
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
| | - K Garg
- Department of Neurosurgery & Gamma-Knife, All India Institute of Medical Sciences, New Delhi, India
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47
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Kishor M, Gupta R, Ashok MV, Isaac M, Chaddha RK, Singh OP, Shah H, Nishchal A, Dave M, Vinay Kumar HR, Das A, Rohilla JK, Singh PK, Kumar P, Swami M, Solanki RK, Sahadevan S, Pal A, Ray R, Garg S, Tikka SK, Dyanin M, Avinash P, Dhiman V, Basu A, Rawat VS, Krishnan V, Menon V, Chandran S, Nebhinani N. Competency-based medical curriculum: Psychiatry, training of faculty, and Indian Psychiatric Society. Indian J Psychiatry 2020; 62:207-208. [PMID: 32382183 PMCID: PMC7197841 DOI: 10.4103/psychiatry.indianjpsychiatry_81_20] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 02/02/2020] [Accepted: 03/02/2020] [Indexed: 11/04/2022] Open
Affiliation(s)
- M Kishor
- Scientific Chairperson of IPS Competency Based UG Psychiatry Curriculum Meet at AIIMS Rishikesh. Department of Psychiatry, JSSMC, JSSAHER, Mysuru, Karnataka, India
| | - Ravi Gupta
- Organizing Chairperson of IPS Competency Based UG Psychiatry Curriculum Meet, Department of Psychiatry, AIIMS, Rishikesh, India
| | - M V Ashok
- Chairman IPS UG committee, Department of Psychiatry, St John's Medical College, Bengaluru, Karnataka, India
| | - Mohan Isaac
- Department of Psychiatry, University of Western Australia, WA, Australia
| | | | - Om Prakash Singh
- Editor, Indian Journal of Psychiatry, Department of Psychiatry, WBES, Kolkata, West Bengal, India
| | - Henal Shah
- Invited Member IPS UG committee, Department of Psychiatry, TNMC, Mumbai, Maharashtra, India
| | - Anil Nishchal
- IPS UG Committee Co-chairperson, Department of Psychiatry, King George's Medical University, Lucknow, Uttar Pradesh, India
| | - Malay Dave
- IPS UG Committee Convener, Pyshiatrist, Mumbai, Maharashtra, India
| | - H R Vinay Kumar
- Department of Psychiatry, AIMS, ACU, Mandya, Karnataka, India
| | - Anindya Das
- Department of Psychiatry, AIIMS, Rishikesh, Uttarakhand, India
| | | | - P K Singh
- Department of Psychiatry, Patna Medical College, Patna, Bihar, India
| | - Pankaj Kumar
- Department of Psychiatry, AIIMS, Patna, Bihar, India
| | - Mukesh Swami
- Department of Psychiatry, AIIMS, Jodhpur, Rajasthan, India
| | - R K Solanki
- Department of Psychiatry, SMS Medical College, Jaipur, Rajasthan, India
| | - Sreeja Sahadevan
- Department of Psychiatry, MOSC Medical College, Ernakulum, Kerala, India
| | - Aragya Pal
- Department of Psychiatry, HIMS, Dehradun, Uttarakhand, India
| | - Rajat Ray
- Psychiatrist, Dehradun, Uttarakhand, India
| | - Shobit Garg
- Department of Psychiatry, SGRRMHS, Dehradun, Uttarakhand, India
| | | | - Mohan Dyanin
- Department of Psychiatry, SGRRMHS, Dehradun, Uttarakhand, India
| | | | - Vishal Dhiman
- Department of Psychiatry, AIIMS, Rishikesh, Uttarakhand, India
| | - Aniruddha Basu
- Department of Psychiatry, AIIMS, Rishikesh, Uttarakhand, India
| | | | - Vijay Krishnan
- Department of Psychiatry, AIIMS, Rishikesh, Uttarakhand, India
| | - Vikas Menon
- Department of Psychiatry, JIPMER, Pondicherry, India.,Contribution in Absentia, India
| | - Suhas Chandran
- Chairman IPS UG committee, Department of Psychiatry, St John's Medical College, Bengaluru, Karnataka, India.,Contribution in Absentia, India
| | - Naresh Nebhinani
- Department of Psychiatry, AIIMS, Jodhpur, Rajasthan, India.,Contribution in Absentia, India
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48
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Pearce P, Song B, Skinner DJ, Mok R, Hartmann R, Singh PK, Jeckel H, Oishi JS, Drescher K, Dunkel J. Flow-Induced Symmetry Breaking in Growing Bacterial Biofilms. Phys Rev Lett 2019; 123:258101. [PMID: 31922766 DOI: 10.1103/physrevlett.123.258101] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Indexed: 06/10/2023]
Abstract
Bacterial biofilms represent a major form of microbial life on Earth and serve as a model active nematic system, in which activity results from growth of the rod-shaped bacterial cells. In their natural environments, ranging from human organs to industrial pipelines, biofilms have evolved to grow robustly under significant fluid shear. Despite intense practical and theoretical interest, it is unclear how strong fluid flow alters the local and global architectures of biofilms. Here, we combine highly time-resolved single-cell live imaging with 3D multiscale modeling to investigate the mechanisms by which flow affects the dynamics of all individual cells in growing biofilms. Our experiments and cell-based simulations reveal three quantitatively different growth phases in strong external flow and the transitions between them. In the initial stages of biofilm development, flow induces a downstream gradient in cell orientation, causing asymmetrical dropletlike biofilm shapes. In the later developmental stages, when the majority of cells are sheltered from the flow by the surrounding extracellular matrix, buckling-induced cell verticalization in the biofilm core restores radially symmetric biofilm growth, in agreement with predictions of a 3D continuum model.
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Affiliation(s)
- Philip Pearce
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge Massachusetts 02139-4307, USA
| | - Boya Song
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge Massachusetts 02139-4307, USA
| | - Dominic J Skinner
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge Massachusetts 02139-4307, USA
| | - Rachel Mok
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge Massachusetts 02139-4307, USA
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139-4307, USA
| | - Raimo Hartmann
- Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany
| | - Praveen K Singh
- Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany
| | - Hannah Jeckel
- Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, 35043 Marburg, Germany
| | - Jeffrey S Oishi
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge Massachusetts 02139-4307, USA
- Department of Physics, Bates College, Lewiston, Maine 04240, USA
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, 35043 Marburg, Germany
| | - Jörn Dunkel
- Department of Mathematics, Massachusetts Institute of Technology, Cambridge Massachusetts 02139-4307, USA
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49
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Kapil S, Singh PK, Kashyap A, Silakari O. Structure based designing of benzimidazole/benzoxazole derivatives as anti-leishmanial agents. SAR QSAR Environ Res 2019; 30:919-933. [PMID: 31702401 DOI: 10.1080/1062936x.2019.1684357] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 10/21/2019] [Indexed: 06/10/2023]
Abstract
Folates are essential biomolecules required to carry out many crucial processes in leishmania parasite. Dihydrofolate reductase-thymidylate synthase (DHFR-TS) and pteridine reductase 1 (PTR1) involved in folate biosynthesis in leishmania have been established as suitable targets for development of chemotherapy against leishmaniasis. In the present study, various computational tools such as homology modelling, pharmacophore modelling, docking, molecular dynamics and molecular mechanics have been employed to design dual DHFR-TS and PTR1 inhibitors. Two designed molecules, i.e. 2-(4-((4-nitrobenzyl)oxy)phenyl)-1H-benzo[d]imidazole and 2-(4-((2,4-dichlorobenzyl)oxy)phenyl)-1H-benzo[d]oxazolemolecules were synthesized. MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) assay was performed to evaluate in vitro activity of molecules against promastigote form of Leishmania donovani using Miltefosine as standard. 2-(4-((4-nitrobenzyl)oxy)phenyl)-1H-benzo[d]imidazole and 2-(4-((2,4-dichlorobenzyl)oxy)phenyl)-1H-benzo[d]oxazolemolecules were found to be moderately active with showed IC50 = 68 ± 2.8 µM and 57 ± 4.2 µM, respectively.
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Affiliation(s)
- S Kapil
- Molecular Modeling Lab (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
| | - P K Singh
- Molecular Modeling Lab (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
| | - A Kashyap
- Molecular Modeling Lab (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
| | - O Silakari
- Molecular Modeling Lab (MML), Department of Pharmaceutical Sciences and Drug Research, Punjabi University, Patiala, India
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50
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Gupta C, Das S, Rai G, Singh PK, Dar S, Ansari MA. 1731. Immune Dysregulation in Mucormycosis. Open Forum Infect Dis 2019. [PMCID: PMC6808671 DOI: 10.1093/ofid/ofz360.1594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background
Mucormycosis is a fatal fungal infection with unique predisposition to infect diabetics. Dysregulated adaptive immunity contributes to the pathogenesis in all fungal diseases, but activated Th17 cells have laid a new dimension to chronic inflammatory response which was previously attributed to uncontrolled Th1 response. We attempted to study the Th17 and T regulatory (Treg) immune response in diabetic patients with mucormycosis and compared the data with a healthy control and a T2DM case without fungal infection. In addition we could follow-up one patient post 6-month treatment and performed immunological studies.
Methods
2 mL of blood samples were collected in EDTA vial from two patients who were suffering from diabetes with mucormycosis for immunological investigations. Samples were also taken from age-matched T2DM patient without fungal infection and a healthy volunteer as controls for T-cell parameters. Repeat blood sample was taken to study immune parameters in one patient who was followed up after 6 months. The expression of various T-cell markers was analyzed by immunostaining with the antibodies against CD3, CD4, CD25, CD161, IL-23R [Becton Dickinson (BD) PharMingen]. Fluorescence profiles were analyzed using Flow Jo software (BD Biosciences). The results are expressed as a percentage of positive cells.
Results
The percentages of CD4+ cells were low in both patients when compared with and healthy control but it is much higher in diabetes case when compared with others. CD161+ cell population was higher in both patients when compared with healthy control and diabetic patient without fungal infection. The percentage of IL23R+ cells was significantly high in patient before treatment when compared with, healthy control and diabetics. and decline after treatment. The percentage positivity of CD25+ cells was highest in healthy control when compared with others. The profile of CD25+ cells was comparatively similar in patient before treatment and diabetics but we found a higher percentage, in patients after treatment.
Conclusion
The findings in this study imminently indicate the mechanism of immune dysregulation involving Th17 and Treg pathways in mucormycosis and provide evidence that restoration of Th17/Treg may be considered as a therapeutic option for long-term benefit in diabetics.
Disclosures
All authors: No reported disclosures.
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Affiliation(s)
| | | | | | | | - Sajad Dar
- Jazan University, Jizan, Saudi Arabia
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