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Kuvelja A, Morina F, Mijovilovich A, Bokhari SNH, Konik P, Koloniuk I, Küpper H. Zinc priming enhances Capsicum annuum immunity against infection by Botrytis cinerea- From the whole plant to the molecular level. Plant Sci 2024; 343:112060. [PMID: 38460554 DOI: 10.1016/j.plantsci.2024.112060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 02/29/2024] [Accepted: 03/04/2024] [Indexed: 03/11/2024]
Abstract
Micronutrient manipulation can enhance crop resilience against pathogens, but the mechanisms are mostly unknown. We tested whether priming Capsicum annuum plants with zinc (5 μM Zn) or manganese (3 μM Mn) for six weeks increases their immunity against the generalist necrotroph Botrytis cinerea compared to deficient (0.1 μM Zn, 0.02 μM Mn) and control conditions (1 μM Zn, 0.6 μM Mn). Zinc priming reduced the pathogen biomass and lesion area and preserved CO2 assimilation and stomatal conductance. Zinc mobilization at the infection site, visualized by micro-X-ray fluorescence, was accompanied by increased Zn protein binding obtained by size exclusion HPLC-ICP/MS. A common metabolic response to fungal infection in Zn- and Mn-primed plants was an accumulation of corchorifatty acid F, a signaling compound, and the antifungal compound acetophenone. In vitro tests showed that the binding of Zn2+ increased, while Mn2+ binding decreased acetophenone toxicity against B. cinerea at concentrations far below the toxicity thresholds of both metals in unbound (aquo complex) form. The metal-specific response to fungal infection included the accumulation of phenolics and amino acids (Mn), and the ligand isocitrate (Zn). The results highlight the importance of Zn for pepper immunity through direct involvement in immunity-related proteins and low molecular weight Zn-complexes, while Mn priming was inefficient.
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Affiliation(s)
- Anđela Kuvelja
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Laboratory of Plant Biophysics and Biochemistry, Branišovská 31/1160, České Budějovice 370 05, Czech Republic; University of South Bohemia, Faculty of Science, Branišovská 31/1160, České Budějovice 370 05, Czech Republic
| | - Filis Morina
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Laboratory of Plant Biophysics and Biochemistry, Branišovská 31/1160, České Budějovice 370 05, Czech Republic.
| | - Ana Mijovilovich
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Laboratory of Plant Biophysics and Biochemistry, Branišovská 31/1160, České Budějovice 370 05, Czech Republic
| | - Syed Nadeem Hussain Bokhari
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Laboratory of Plant Biophysics and Biochemistry, Branišovská 31/1160, České Budějovice 370 05, Czech Republic
| | - Peter Konik
- University of South Bohemia, Faculty of Science, Branišovská 31/1160, České Budějovice 370 05, Czech Republic
| | - Igor Koloniuk
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Laboratory of Plant Virology, Branišovská 31/1160, České Budějovice 370 05, Czech Republic
| | - Hendrik Küpper
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Laboratory of Plant Biophysics and Biochemistry, Branišovská 31/1160, České Budějovice 370 05, Czech Republic; University of South Bohemia, Faculty of Science, Branišovská 31/1160, České Budějovice 370 05, Czech Republic.
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Koloniuk I, Fránová J, Přibylová J, Sarkisova T, Špak J, Tan JL, Zemek R, Čmejla R, Rejlová M, Valentová L, Sedlák J, Holub J, Skalík J, Blystad DR, Sapkota B, Hamborg Z. Molecular Characterization of a Novel Enamovirus Infecting Raspberry. Viruses 2023; 15:2281. [PMID: 38140523 PMCID: PMC10747458 DOI: 10.3390/v15122281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 11/10/2023] [Accepted: 11/16/2023] [Indexed: 12/24/2023] Open
Abstract
Raspberry plants, valued for their fruits, are vulnerable to a range of viruses that adversely affect their yield and quality. Utilizing high-throughput sequencing (HTS), we identified a novel virus, tentatively named raspberry enamovirus 1 (RaEV1), in three distinct raspberry plants. This study provides a comprehensive characterization of RaEV1, focusing on its genomic structure, phylogeny, and possible transmission routes. Analysis of nearly complete genomes from 14 RaEV1 isolates highlighted regions of variance, particularly marked by indel events. The evidence from phylogenetic and sequence analyses supports the classification of RaEV1 as a distinct species within the Enamovirus genus. Among the 289 plant and 168 invertebrate samples analyzed, RaEV1 was detected in 10.4% and 0.4%, respectively. Most detections occurred in plants that were also infected with other common raspberry viruses. The virus was present in both commercial and wild raspberries, indicating the potential of wild plants to act as viral reservoirs. Experiments involving aphids as potential vectors demonstrated their ability to acquire RaEV1 but not to successfully transmit it to plants.
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Affiliation(s)
- Igor Koloniuk
- Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.F.); (J.P.); (T.S.); (J.Š.)
| | - Jana Fránová
- Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.F.); (J.P.); (T.S.); (J.Š.)
| | - Jaroslava Přibylová
- Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.F.); (J.P.); (T.S.); (J.Š.)
| | - Tatiana Sarkisova
- Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.F.); (J.P.); (T.S.); (J.Š.)
| | - Josef Špak
- Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.F.); (J.P.); (T.S.); (J.Š.)
| | - Jiunn Luh Tan
- Institute of Entomology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.L.T.); (R.Z.)
- Faculty of Science, University of South Bohemia, 370 05 Ceske Budejovice, Czech Republic
| | - Rostislav Zemek
- Institute of Entomology, Biology Centre, Czech Academy of Sciences, 370 05 Ceske Budejovice, Czech Republic; (J.L.T.); (R.Z.)
| | - Radek Čmejla
- Research and Breeding Institute of Pomology Holovousy Ltd., 508 01 Horice, Czech Republic; (R.Č.); (M.R.); (L.V.); (J.S.)
| | - Martina Rejlová
- Research and Breeding Institute of Pomology Holovousy Ltd., 508 01 Horice, Czech Republic; (R.Č.); (M.R.); (L.V.); (J.S.)
| | - Lucie Valentová
- Research and Breeding Institute of Pomology Holovousy Ltd., 508 01 Horice, Czech Republic; (R.Č.); (M.R.); (L.V.); (J.S.)
| | - Jiří Sedlák
- Research and Breeding Institute of Pomology Holovousy Ltd., 508 01 Horice, Czech Republic; (R.Č.); (M.R.); (L.V.); (J.S.)
| | - Jan Holub
- Jan Holub Ltd., 783 25 Bouzov, Czech Republic; (J.H.); (J.S.)
| | - Jan Skalík
- Jan Holub Ltd., 783 25 Bouzov, Czech Republic; (J.H.); (J.S.)
| | - Dag-Ragnar Blystad
- Norwegian Institute of Bioeconomy Research, 1433 Aas, Norway; (D.-R.B.); (B.S.); (Z.H.)
| | - Bijaya Sapkota
- Norwegian Institute of Bioeconomy Research, 1433 Aas, Norway; (D.-R.B.); (B.S.); (Z.H.)
| | - Zhibo Hamborg
- Norwegian Institute of Bioeconomy Research, 1433 Aas, Norway; (D.-R.B.); (B.S.); (Z.H.)
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Rollin J, Bester R, Brostaux Y, Caglayan K, De Jonghe K, Eichmeier A, Foucart Y, Haegeman A, Koloniuk I, Kominek P, Maree H, Onder S, Posada Céspedes S, Roumi V, Šafářová D, Schumpp O, Ulubas Serce C, Sõmera M, Tamisier L, Vainio E, van der Vlugt RAA, Massart S. Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies. PeerJ 2023; 11:e15816. [PMID: 37601254 PMCID: PMC10439718 DOI: 10.7717/peerj.15816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 07/10/2023] [Indexed: 08/22/2023] Open
Abstract
Recent developments in high-throughput sequencing (HTS) technologies and bioinformatics have drastically changed research in virology, especially for virus discovery. Indeed, proper monitoring of the viral population requires information on the different isolates circulating in the studied area. For this purpose, HTS has greatly facilitated the sequencing of new genomes of detected viruses and their comparison. However, bioinformatics analyses allowing reconstruction of genome sequences and detection of single nucleotide polymorphisms (SNPs) can potentially create bias and has not been widely addressed so far. Therefore, more knowledge is required on the limitations of predicting SNPs based on HTS-generated sequence samples. To address this issue, we compared the ability of 14 plant virology laboratories, each employing a different bioinformatics pipeline, to detect 21 variants of pepino mosaic virus (PepMV) in three samples through large-scale performance testing (PT) using three artificially designed datasets. To evaluate the impact of bioinformatics analyses, they were divided into three key steps: reads pre-processing, virus-isolate identification, and variant calling. Each step was evaluated independently through an original, PT design including discussion and validation between participants at each step. Overall, this work underlines key parameters influencing SNPs detection and proposes recommendations for reliable variant calling for plant viruses. The identification of the closest reference, mapping parameters and manual validation of the detection were recognized as the most impactful analysis steps for the success of the SNPs detections. Strategies to improve the prediction of SNPs are also discussed.
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Affiliation(s)
- Johan Rollin
- Laboratory of Plant Pathology—TERRA—Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
| | - Rachelle Bester
- Citrus Research International, Matieland, South Africa
- Department of Genetics, Stellenbosch University, Matieland, South Africa
| | - Yves Brostaux
- Laboratory of Statistics, Computer Science and Modelling Applied to Bioengineering, TERRA, Gembloux Agro-Bio Tech, Teaching and Research Centre, University of Liège, Gembloux, Belgium
| | - Kadriye Caglayan
- Plant Protection Department, Agricultural Faculty, Hatay Mustafa Kemal University, Hatay, Turkey
| | - Kris De Jonghe
- Fisheries and Food (ILVO), Plant Sciences Unit, Flanders Research Institute for Agriculture, Merelbeke, Belgium
| | - Ales Eichmeier
- Mendeleum—Institute of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czech Republic
| | - Yoika Foucart
- Fisheries and Food (ILVO), Plant Sciences Unit, Flanders Research Institute for Agriculture, Merelbeke, Belgium
| | - Annelies Haegeman
- Fisheries and Food (ILVO), Plant Sciences Unit, Flanders Research Institute for Agriculture, Merelbeke, Belgium
| | - Igor Koloniuk
- Biology Centre CAS, Ceske Budejovice, Czech Republic
| | | | - Hans Maree
- Citrus Research International, Matieland, South Africa
- Department of Genetics, Stellenbosch University, Matieland, South Africa
| | - Serkan Onder
- Department of Plant Protection, Faculty of Agriculture, Eskişehir Osmangazi University, Eskişehir, Turkey
| | - Susana Posada Céspedes
- Department of Biosystems Science and Engineering, ETH Zurich, Basel, 4058, Switzerland
- Swiss Institute of Bioinformatics (SIB), Basel, Switzerland
| | - Vahid Roumi
- Plant Protection Department, Faculty of Agriculture, University of Maragheh, Maragheh, Iran
| | - Dana Šafářová
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University Olomouc, Olomouc, Czech Republic
| | | | - Cigdem Ulubas Serce
- Plant Production and Technologies Department, Ayhan Şahenk Faculty of Agricultural Science and Technologies, Niğde Ömer Halisdemir University, Niğde, Turkey
| | - Merike Sõmera
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Lucie Tamisier
- Pathologie Végétale, Institut National de la Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Montfavet, France
- GAFL, Institut National de la Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Montfavet, France
| | - Eeva Vainio
- Natural Resources Institute Finland, Helsinki, Finland
| | | | - Sebastien Massart
- Laboratory of Plant Pathology—TERRA—Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
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Koloniuk I, Matyášová A, Brázdová S, Veselá J, Přibylová J, Várallyay E, Fránová J. Analysis of Virus-Derived siRNAs in Strawberry Plants Co-Infected with Multiple Viruses and Their Genotypes. Plants (Basel) 2023; 12:2564. [PMID: 37447124 DOI: 10.3390/plants12132564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 07/03/2023] [Accepted: 07/04/2023] [Indexed: 07/15/2023]
Abstract
Plants can be infected with multiple viruses. High-throughput sequencing tools have enabled numerous discoveries of multi-strain infections, when more than one viral strain or divergent genomic variant infects a single plant. Here, we investigated small interfering RNAs (siRNAs) in a single strawberry plant co-infected with several strains of strawberry mottle virus (SMoV), strawberry crinkle virus (SCV) and strawberry virus 1 (StrV-1). A range of plants infected with subsets of the initial viral species and strains that were obtained by aphid-mediated transmission were also evaluated. Using high-throughput sequencing, we characterized the small RNA fractions associated with different genotypes of these three viruses and determined small RNA hotspot regions in viral genomes. A comparison of virus-specific siRNA (vsiRNA) abundance with relative viral concentrations did not reveal any consistent agreement. Strawberry mottle virus strains exhibiting considerable variations in concentrations were found to be associated with comparable quantities of vsiRNAs. Additionally, by estimating the specificity of siRNAs to different viral strains, we observed that a substantial pool of vsiRNAs could target all SMoV strains, while strain-specific vsiRNAs predominantly targeted rhabdoviruses, SCV and StrV-1. This highlights the intricate nature and potential interference of the antiviral response within a single infected plant when multiple viruses are present.
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Affiliation(s)
- Igor Koloniuk
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic
| | - Alena Matyášová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic
| | - Sára Brázdová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic
- Faculty of Agriculture, University of South Bohemia, 370 05 Ceske Budejovice, Czech Republic
| | - Jana Veselá
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic
| | - Jaroslava Přibylová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic
| | - Eva Várallyay
- Genomics Research Group, Institute of Plant Protection, Department of Plant Pathology, Hungarian University of Agriculture and Life Sciences, Szent-Gyorgyi Albert Street 4, 2100 Gödöllő, Hungary
| | - Jana Fránová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic
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Franova J, Pribylova J, Zemek R, Tan JL, Hamborg Z, Blystad DR, Lenz O, Koloniuk I. First report of 'Candidatus Phytoplasma rubi' associated with Rubus stunt disease of raspberry and blackberry in the Czech Republic. Plant Dis 2023. [PMID: 37133341 DOI: 10.1094/pdis-03-23-0467-pdn] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Raspberries (Rubus idaeus L.), occurring in the temperate zone of the northern hemisphere and blackberries (R. fruticosus L.), cultivated and growing all over the world, are plant species of the family Rosaceae. These species are susceptible to phytoplasma infections, which cause Rubus stunt disease. It spreads uncontrolled by vegetative propagation of plants (Linck and Reineke 2019a) and by phloem-sucking insect vectors, especially Macropsis fuscula (Hemiptera: Cicadellidae) (de Fluiter and van der Meer, 1953; Linck and Reineke 2019b). During a survey in commercial field in June 2021, over 200 raspberry bushes cv Enrosadira exhibiting typical symptoms of Rubus stunt were observed in Central Bohemia. Symptoms included dieback, leaf yellowing/reddening, stunted growth, severe phyllody and fruit malformations. Most diseased plants were growing in the edge rows of the field (about 80%). No symptomatic plants were observed in the middle of the field. Similar symptoms were observed in private gardens in South Bohemia on raspberry cv Rutrago and blackberry (unknown cultivar) in June 2018 and August 2022, respectively. DNA was extracted using the DNeasy Plant Mini Kit (Qiagen GmbH, Hilden, Germany) from flower stems and parts affected by phyllody of seven symptomatic plants as well as flower stems, leaf midribs, and petioles of five asymptomatic field plants. The DNA extracts were analyzed by a nested polymerase chain reaction assay using universal phytoplasma P1A/P7A primers followed by R16F2m/R1m and the group-specific R16(V)F1/R1 primers (Bertaccini et al. 2019). All samples from the symptomatic plants yielded an amplicon of expected size, while no product was amplified in asymptomatic plants. The P1A/P7A amplicons from three selected plants (two raspberries and one blackberry, each from different location) were cloned and bi-directionally Sanger sequenced (GenBank Accession Nos.OQ520100-2). The sequences spanned nearly full-length of 16S rRNA gene, 16S-23S rRNA intergenic spacer, tRNA-Ile gene, and a partial 23S rRNA gene. BLASTn search revealed the highest sequence identity (99.8-99.9%, query coverage 100%) to 'Candidatus Phytoplasma rubi' strain RS (GenBank Accession No. CP114006). To further characterize the 'Ca. P. rubi' strains, all these three samples were subjected to multigene sequence analysis. Sequences from a major portion of the tuf, rplV-rpsC, rpsH-rplR, uvrB-degV, and rplO-SecY-map genes (Acc. Nos. OQ506112-26) were obtained as described previously (Fránová et al. 2016). Comparison to GenBank sequences confirmed their highest identity (99.6-100%, query coverage 100%) with 'Ca. P. rubi' RS strain, regardless of their geographic location and host (raspberry or blackberry). Recently, Bertaccini et al. (2022) suggested the 98,65 % 'Ca. Phytoplasma' strain identity threshold within 16Sr RNA sequences. In this survey, all three strains sequenced shared ≥99.73% sequence identity of the analysed 16S rRNA gene sequences and the high identity in the other genes with the reference 'Ca. P. rubi' RS strain. To our knowledge, this is the first report of Rubus stunt disease in the Czech Republic as well as the first molecular identification and characterization of 'Ca. P. rubi' from raspberry and blackberry in our country. As Rubus stunt disease is of great economic importance (Linck and Reineke 2019a), the pathogen detection and prompt removal of the diseased shrubs are essential to mitigating the spread and impact of the disease.
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Affiliation(s)
- Jana Franova
- Biology Centre Czech Academy of Sciences Institute of Plant Molecular Biology, 98736, Plant Virology, Ceske Budjovice, Jihočeský, Czech Republic;
| | - Jaroslava Pribylova
- Biology Centre Czech Academy of Sciences Institute of Plant Molecular Biology, 98736, Plant Virology, Ceske Budjovice, Jihočeský, Czech Republic;
| | - Rostislav Zemek
- Biology Centre CAS Institute of Entomology, 112467, Ceske Budejovice, Jihočeský, Czech Republic;
| | - Jiunn Luh Tan
- Biology Centre CAS Institute of Entomology, 112467, Ceske Budejovice, Jihočeský, Czech Republic
- University of South Bohemia in Ceske Budejovice Faculty of Science, 204738, Ceske Budejovice, Jihočeský, Czech Republic;
| | - Zhibo Hamborg
- Norwegian Institute of Bioeconomy Research, 56624, Division of Biotechnology and Plant Health, Høgskoleveien 7, Aas, Norway, 1433;
| | - Dag-Ragnar Blystad
- Norsk Institutt for Biookonomi, 56624, Plant Protection, Høgskolevegen 7, As, Norway, 1433;
| | - Ondrej Lenz
- Biology Centre Czech Academy of Sciences Institute of Plant Molecular Biology, 98736, Plant Virology, Ceske Budjovice, Jihočeský, Czech Republic;
| | - Igor Koloniuk
- Biology Centre Czech Academy of Sciences, 90801, Plant Virology, Ceske Budejovice, Czech Republic;
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Khalili M, Candresse T, Koloniuk I, Safarova D, Brans Y, Faure C, Delmas M, Massart S, Aranda MA, Caglayan K, Decroocq V, Drogoudi P, Glasa M, Pantelidis G, Navratil M, Latour F, Spak J, Pribylova J, Mihalik D, Palmisano F, Saponari A, Necas T, Sedlak J, Marais A. The Expanding Menagerie of Prunus-Infecting Luteoviruses. Phytopathology 2023; 113:345-354. [PMID: 35972890 DOI: 10.1094/phyto-06-22-0203-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Members of the genus Luteovirus are responsible for economically destructive plant diseases worldwide. Over the past few years, three luteoviruses infecting Prunus trees have been characterized. However, the biological properties, prevalence, and genetic diversity of those viruses have not yet been studied. High-throughput sequencing of samples of various wild, cultivated, and ornamental Prunus species enabled the identification of four novel species in the genus Luteovirus for which we obtained complete or nearly complete genomes. Additionally, we identified another new putative species recovered from Sequence Read Archive data. Furthermore, we conducted a survey on peach-infecting luteoviruses in eight European countries. Analyses of 350 leaf samples collected from germplasm, production orchards, and private gardens showed that peach-associated luteovirus (PaLV), nectarine stem pitting-associated virus (NSPaV), and a novel luteovirus, peach-associated luteovirus 2 (PaLV2), are present in all countries; the most prevalent virus was NSPaV, followed by PaLV. The genetic diversity of these viruses was also analyzed. Moreover, the biological indexing on GF305 peach indicator plants demonstrated that PaLV and PaLV2, like NSPaV, are transmitted by graft at relatively low rates. No clear viral symptoms have been observed in either graft-inoculated GF305 indicators or different peach tree varieties observed in an orchard. The data generated during this study provide a broader overview of the genetic diversity, geographical distribution, and prevalence of peach-infecting luteoviruses and suggest that these viruses are likely asymptomatic in peach under most circumstances.
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Affiliation(s)
- Maryam Khalili
- Université de Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France
| | | | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Dana Safarova
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc, Czech Republic
| | - Yoann Brans
- Laboratoire de Virologie et de Biologie Moléculaire, CTIFL, Prigonrieux, France
| | - Chantal Faure
- Université de Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France
| | - Marine Delmas
- INRAE, Unité Expérimentale Arboricole, Toulenne, France
| | - Sébastien Massart
- Laboratory of Plant Pathology, TERRA, Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium
| | - Miguel A Aranda
- Department of Stress Biology and Plant Pathology, Centro de Edafología y Biología Aplicada del Segura, CSIC, Murcia, Spain
| | - Kadriye Caglayan
- Department of Plant Protection, Hatay Mustafa Kemal University, Antakya, Hatay, Turkey
| | | | - Pavlina Drogoudi
- Department of Deciduous Fruit Trees, Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Naoussa, Greece
| | - Miroslav Glasa
- Biomedical Research Center of the Slovak Academy of Sciences, Institute of Virology, Bratislava, Slovakia
- Faculty of Natural Sciences, University of Ss. Cyril and Methodius, Trnava, Slovakia
| | - George Pantelidis
- Department of Deciduous Fruit Trees, Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Naoussa, Greece
| | - Milan Navratil
- Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc, Czech Republic
| | - François Latour
- Laboratoire de Virologie et de Biologie Moléculaire, CTIFL, Prigonrieux, France
| | - Josef Spak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Jaroslava Pribylova
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Daniel Mihalik
- Faculty of Natural Sciences, University of Ss. Cyril and Methodius, Trnava, Slovakia
| | - Francesco Palmisano
- Centro di Ricerca, Sperimentazione e Formazione in Agricoltura "Basile Caramia", Locorotondo, Italy
| | - Antonella Saponari
- Centro di Ricerca, Sperimentazione e Formazione in Agricoltura "Basile Caramia", Locorotondo, Italy
| | - Tomas Necas
- Department of Fruit Science, Faculty of Horticulture, Mendel University, Lednice, Czech Republic
| | - Jiri Sedlak
- Vyzkumny A Slechtitelsky Ustav Ovocnarsky, Holovousy, Czech Republic
| | - Armelle Marais
- Université de Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France
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Petrzik K, Přibylová J, Špak J, Sarkisova T, Fránová J, Holub J, Skalík J, Koloniuk I. Mixed Infection of Blackcurrant with a Novel Cytorhabdovirus and Black Currant-Associated Nucleorhabdovirus. Viruses 2022; 14:v14112456. [PMID: 36366554 PMCID: PMC9697673 DOI: 10.3390/v14112456] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 11/01/2022] [Accepted: 11/03/2022] [Indexed: 11/09/2022] Open
Abstract
A virome screen was performed on a new breeding line, KB1, of blackcurrant. Rhabdovirus-like particles were observed by electron microscopy in ultrathin sections of flower stalks, and the complete genome sequence of a novel virus, provisionally named blackcurrant rhabdovirus 2 (BCRV2), was determined and verified using high-throughput sequencing. The genomic organization of BCRV2 was characteristic of cytorhabdoviruses (family Rhabdoviridae) and included seven genes: 3 ́- N-P´-P-P3-M-G-L -5 ́. BLASTP analysis revealed that the putative L protein had the highest amino acid sequence identity (75 %) with strawberry virus 2. BCRV2 was detected in Cryptomyzusgaleopsidis, but efficient transmission by this aphid was not confirmed. Of note, we observed coinfection of the KB1 line with blackcurrant-associated rhabdovirus (BCaRV) by RT-PCR. This is likely the first evidence of the presence of a cyto- and a nucleorhabdovirus in a single host.
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Affiliation(s)
- Karel Petrzik
- Biology Centre Academy of Sciences of the Czech Republic, Institute of Plant Molecular Biology, 370 05 České Budějovice, Czech Republic
- Correspondence:
| | - Jaroslava Přibylová
- Biology Centre Academy of Sciences of the Czech Republic, Institute of Plant Molecular Biology, 370 05 České Budějovice, Czech Republic
| | - Josef Špak
- Biology Centre Academy of Sciences of the Czech Republic, Institute of Plant Molecular Biology, 370 05 České Budějovice, Czech Republic
| | - Tatiana Sarkisova
- Biology Centre Academy of Sciences of the Czech Republic, Institute of Plant Molecular Biology, 370 05 České Budějovice, Czech Republic
| | - Jana Fránová
- Biology Centre Academy of Sciences of the Czech Republic, Institute of Plant Molecular Biology, 370 05 České Budějovice, Czech Republic
| | - Jan Holub
- Jan Holub Ltd., Hvozdečko 7, 783 25 Bouzov, Czech Republic
| | - Jan Skalík
- Jan Holub Ltd., Hvozdečko 7, 783 25 Bouzov, Czech Republic
| | - Igor Koloniuk
- Biology Centre Academy of Sciences of the Czech Republic, Institute of Plant Molecular Biology, 370 05 České Budějovice, Czech Republic
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8
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Várallyay E, Přibylová J, Galbacs ZN, Jahan A, Varga T, Špak J, Lenz O, Fránová J, Sedlák J, Koloniuk I. Detection of Apple Hammerhead Viroid, Apple Luteovirus 1 and Citrus Concave Gum-Associated Virus in Apple Propagation Materials and Orchards in the Czech Republic and Hungary. Viruses 2022; 14:v14112347. [PMID: 36366445 PMCID: PMC9695845 DOI: 10.3390/v14112347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 10/22/2022] [Accepted: 10/24/2022] [Indexed: 02/01/2023] Open
Abstract
Grafting cultivars onto rootstocks is a widely used practice by the apple industry predominantly aimed at faster fruit bearing. Using high-throughput sequencing, we revealed the presence of recently described viral agents, namely apple hammerhead viroid (AHVd), apple luteovirus 1 (ALV-1), and citrus concave gum-associated virus (CCGaV), in germplasm collections and production orchards in the Czech Republic and Hungary. The HTS results were validated with RT-(q)PCR, and Northern blotting techniques. To obtain further insight about the presence of these agents, RT-PCR based surveys were carried out and showed their widespread presence alone or in mixed infections. The pathogens were present both in production areas and in feral samples. In addition, rootstock-to-scion transmission of ALV-1 and CCGaV was confirmed using commercial rootstock materials. Phylogenetic relationships based on partial sequences of distinct variants were also investigated. Furthermore, the rosy apple aphid was found to be ALV-1-positive, suggesting that it might be a potential vector of the virus.
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Affiliation(s)
- Eva Várallyay
- Genomics Research Group, Department of Plant Pathology, Institute of Plant Protection, Hungarian University of Agriculture and Life Sciences, Szent-Gyorgyi Albert Street 4, 2100 Gödöllő, Hungary
- Correspondence: (E.V.); (I.K.)
| | - Jaroslava Přibylová
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Zsuzsanna Nagyne Galbacs
- Genomics Research Group, Department of Plant Pathology, Institute of Plant Protection, Hungarian University of Agriculture and Life Sciences, Szent-Gyorgyi Albert Street 4, 2100 Gödöllő, Hungary
| | - Almash Jahan
- Genomics Research Group, Department of Plant Pathology, Institute of Plant Protection, Hungarian University of Agriculture and Life Sciences, Szent-Gyorgyi Albert Street 4, 2100 Gödöllő, Hungary
| | - Tunde Varga
- Genomics Research Group, Department of Plant Pathology, Institute of Plant Protection, Hungarian University of Agriculture and Life Sciences, Szent-Gyorgyi Albert Street 4, 2100 Gödöllő, Hungary
| | - Josef Špak
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Ondřej Lenz
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Jana Fránová
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Jiří Sedlák
- Research and Breeding Institute of Pomology Holovousy, Ltd., Holovousy 129, 50801 Holovousy, Czech Republic
| | - Igor Koloniuk
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
- Correspondence: (E.V.); (I.K.)
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9
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Koloniuk I, Matyášová A, Brázdová S, Veselá J, Přibylová J, Fránová J, Elena SF. Transmission of Diverse Variants of Strawberry Viruses Is Governed by a Vector Species. Viruses 2022; 14:v14071362. [PMID: 35891344 PMCID: PMC9316375 DOI: 10.3390/v14071362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 06/20/2022] [Accepted: 06/21/2022] [Indexed: 11/16/2022] Open
Abstract
Advances in high-throughput sequencing methods have boosted the discovery of multistrain viral infections in diverse plant systems. This phenomenon appears to be pervasive for certain viral species. However, our knowledge of the transmission aspects leading to the establishment of such mixed infections is limited. Recently, we reported a mixed infection of a single strawberry plant with strawberry mottle virus (SMoV), strawberry crinkle virus (SCV) and strawberry virus 1 (StrV-1). While SCV and StrV-1 are represented by two and three molecular variants, respectively, SmoV has three different RNA1 and RNA2 segments. In this study, we focus on virus acquisition by individual adult aphids of the Aphis gossypii, Aphis forbesi and Chaetosiphon fragaefolii species. Single-aphid transmission trials are performed under experimental conditions. Both different viruses and individual virus strains show varying performances in single aphid acquisition. The obtained data suggests that numerous individual transmission events lead to the establishment of multistrain infections. These data will be important for the development of epidemiological models in plant virology.
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Affiliation(s)
- Igor Koloniuk
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic; (A.M.); (S.B.); (J.V.); (J.P.); (J.F.)
- Correspondence: ; Tel.: +420-38-777-5521
| | - Alena Matyášová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic; (A.M.); (S.B.); (J.V.); (J.P.); (J.F.)
| | - Sára Brázdová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic; (A.M.); (S.B.); (J.V.); (J.P.); (J.F.)
- Faculty of Agriculture, University of South Bohemia, 370 05 Ceske Budejovice, Czech Republic
| | - Jana Veselá
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic; (A.M.); (S.B.); (J.V.); (J.P.); (J.F.)
| | - Jaroslava Přibylová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic; (A.M.); (S.B.); (J.V.); (J.P.); (J.F.)
| | - Jana Fránová
- Institute of Plant Molecular Biology, Department of Plant Virology, Biology Centre CAS, 370 05 Ceske Budejovice, Czech Republic; (A.M.); (S.B.); (J.V.); (J.P.); (J.F.)
| | - Santiago F. Elena
- Instituto de Biología Integrativa de Sistemas, CSIC-Universitat de València, Paterna, 46980 València, Spain;
- Santa Fe Institute, Santa Fe, NM 87501, USA
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10
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Koloniuk I, Přibylová J, Čmejla R, Valentová L, Fránová J. Identification and Characterization of a Novel Umbra-like Virus, Strawberry Virus A, Infecting Strawberry Plants. Plants (Basel) 2022; 11:plants11050643. [PMID: 35270113 PMCID: PMC8912295 DOI: 10.3390/plants11050643] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 02/23/2022] [Accepted: 02/23/2022] [Indexed: 05/08/2023]
Abstract
A novel RNA virus infecting strawberry plants was discovered using high-throughput sequencing. The analyzed plant was simultaneously infected with three different genetic variants of the virus, provisionally named strawberry virus A (StrVA). Although StrVA is phylogenetically clustered with several recently discovered, unclassified plant viruses, it has a smaller genome and several unique features in its genomic organization. A specific and sensitive qPCR system for the detection of identified StrVA genetic variants was designed. A survey conducted in the Czech Republic revealed that StrVA was present in 28.3% of strawberry samples (n = 651) from various origins (plantations, gardens, and propagation material). Sequencing of 48 randomly selected StrVA-positive strawberry samples showed that two or all three StrVA genetic variants were present in 62.5% of the samples in various proportions. StrVA was found in mixed infections with other viruses (strawberry mild yellow edge virus, strawberry crinkle virus, strawberry mottle virus, strawberry polerovirus 1, or strawberry virus 1) in 57.1% of the samples, which complicated the estimation of its biological relevance and impact on the health status of the plants.
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branisovska 31, 370 05 České Budějovice, Czech Republic; (J.P.); (J.F.)
- Correspondence: ; Tel.: +420-38-777-5521
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branisovska 31, 370 05 České Budějovice, Czech Republic; (J.P.); (J.F.)
| | - Radek Čmejla
- Research & Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Horice, Czech Republic; (R.Č.); (L.V.)
| | - Lucie Valentová
- Research & Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Horice, Czech Republic; (R.Č.); (L.V.)
| | - Jana Fránová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branisovska 31, 370 05 České Budějovice, Czech Republic; (J.P.); (J.F.)
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11
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Fránová J, Lenz O, Přibylová J, Čmejla R, Valentová L, Koloniuk I. High Incidence of Strawberry Polerovirus 1 in the Czech Republic and Its Vectors, Genetic Variability and Recombination. Viruses 2021; 13:2487. [PMID: 34960756 PMCID: PMC8706236 DOI: 10.3390/v13122487] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Revised: 12/06/2021] [Accepted: 12/08/2021] [Indexed: 12/11/2022] Open
Abstract
In total, 332 strawberry plants from 33 different locations in the Czech Republic with or without disease symptoms were screened by RT-PCR for the presence of strawberry polerovirus 1 (SPV1) and five other viruses: strawberry mottle virus, strawberry crinkle virus, strawberry mild yellow edge virus, strawberry vein banding virus, and strawberry virus 1. SPV1 was detected in 115 tested strawberry plants (35%), including 89 mixed infections. No correlation between symptoms and the detected viruses was found. To identify potential invertebrate SPV1 vectors, strawberry-associated invertebrate species were screened by RT-PCR, and the virus was found in the aphids Aphis forbesi, A. gossypii, A. ruborum, A.sanquisorbae, Aulacorthum solani, Chaetosiphon fragaefolii, Myzus ascalonicus, and several other non-aphid invertebrate species. SPV1 was also detected in aphid honeydew. Subsequent tests of C. fragaefolii and A.gossypii virus transmission ability showed that at least 4 h of acquisition time were needed to acquire the virus. However, 1 day was sufficient for inoculation using C. fragaefolii. In conclusion, being aphid-transmitted like other tested viruses SPV1 was nevertheless the most frequently detected agent. Czech SPV1 isolates belonged to at least two phylogenetic clusters. The sequence analysis also indicated that recombination events influence evolution of SPV1 genomes.
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Affiliation(s)
- Jana Fránová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 České Budějovice, Czech Republic; (O.L.); (J.P.)
| | - Ondřej Lenz
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 České Budějovice, Czech Republic; (O.L.); (J.P.)
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 České Budějovice, Czech Republic; (O.L.); (J.P.)
| | - Radek Čmejla
- Laboratory for Molecular Biology, Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic; (R.Č.); (L.V.)
| | - Lucie Valentová
- Laboratory for Molecular Biology, Research and Breeding Institute of Pomology Holovousy Ltd., Holovousy 129, 508 01 Hořice, Czech Republic; (R.Č.); (L.V.)
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05 České Budějovice, Czech Republic; (O.L.); (J.P.)
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12
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Kuhn JH, Adkins S, Agwanda BR, Kubrusli RA, Alkhovsky (Aльxoвcкий Cepгeй Bлaдимиpoвич) SV, Amarasinghe GK, Avšič-Županc T, Ayllón MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Basler CF, Bavari S, Beer M, Bejerman N, Bennett AJ, Bente DA, Bergeron É, Bird BH, Blair CD, Blasdell KR, Blystad DR, Bojko J, Borth WB, Bradfute S, Breyta R, Briese T, Brown PA, Brown JK, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Büttner C, Calisher CH, Cao (曹孟籍) M, Casas I, Chandran K, Charrel RN, Cheng Q, Chiaki (千秋祐也) Y, Chiapello M, Choi IR, Ciuffo M, Clegg JCS, Crozier I, Bó ED, de la Torre JC, de Lamballerie X, de Swart RL, Debat H, Dheilly NM, Di Cicco E, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolnik O, Drebot MA, Drexler JF, Dundon WG, Duprex WP, Dürrwald R, Dye JM, Easton AJ, Ebihara (海老原秀喜) H, Elbeaino T, Ergünay K, Ferguson HW, Fooks AR, Forgia M, Formenty PBH, Fránová J, Freitas-Astúa J, Fu (付晶晶) J, Fürl S, Gago-Zachert S, Gāo GF, García ML, García-Sastre A, Garrison AR, Gaskin T, Gonzalez JPJ, Griffiths A, Goldberg TL, Groschup MH, Günther S, Hall RA, Hammond J, Han (韩彤) T, Hepojoki J, Hewson R, Hong (洪健) J, Hong (洪霓) N, Hongo S, Horie (堀江真行) M, Hu JS, Hu T, Hughes HR, Hüttner F, Hyndman TH, Ilyas M, Jalkanen R, Jiāng (姜道宏) D, Jonson GB, Junglen S, Kadono (上遠野冨士夫) F, Kaukinen KH, Kawate M, Klempa B, Klingström J, Kobinger G, Koloniuk I, Kondō (近藤秀樹) H, Koonin EV, Krupovic M, Kubota (久保田健嗣) K, Kurath G, Laenen L, Lambert AJ, Langevin SL, Lee B, Lefkowitz EJ, Leroy EM, Li (李邵蓉) S, Li (李龙辉) L, Lǐ (李建荣) J, Liu (刘华珍) H, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Marzano SYL, Massart S, McCauley JW, Melzer M, Mielke-Ehret N, Miller KM, Ming TJ, Mirazimi A, Mordecai GJ, Mühlbach HP, Mühlberger E, Naidu R, Natsuaki (夏秋知英) T, Navarro JA, Netesov (Heтёcoв Cepгeй Bиктopoвич) SV, Neumann G, Nowotny N, Nunes MRT, Olmedo-Velarde A, Palacios G, Pallás V, Pályi B, Papa (Άννα Παπά) A, Paraskevopoulou (Παρασκευοπούλου Σοφία) S, Park AC, Parrish CR, Patterson DA, Pauvolid-Corrêa A, Pawęska JT, Payne S, Peracchio C, Pérez DR, Postler TS, Qi (亓立莹) L, Radoshitzky SR, Resende RO, Reyes CA, Rima BK, Luna GR, Romanowski V, Rota P, Rubbenstroth D, Rubino L, Runstadler JA, Sabanadzovic S, Sall AA, Salvato MS, Sang R, Sasaya (笹谷孝英) T, Schulze AD, Schwemmle M, Shi (施莽) M, Shí (石晓宏) X, Shí (石正丽) Z, Shimomoto (下元祥史) Y, Shirako Y, Siddell SG, Simmonds P, Sironi M, Smagghe G, Smither S, Song (송진원) JW, Spann K, Spengler JR, Stenglein MD, Stone DM, Sugano J, Suttle CA, Tabata A, Takada (高田礼人) A, Takeuchi (竹内繁治) S, Tchouassi DP, Teffer A, Tesh RB, Thornburg NJ, Tomitaka (冨高保弘) Y, Tomonaga (朝長啓造) K, Tordo N, Torto B, Towner JS, Tsuda (津田新哉) S, Tu (涂长春) C, Turina M, Tzanetakis I, Uchida J, Usugi (宇杉富雄) T, Vaira AM, Vallino M, van den Hoogen B, Varsani A, Vasilakis (Νίκος Βασιλάκης) N, Verbeek M, von Bargen S, Wada J, Wahl V, Walker PJ, Wang (王林发) LF, Wang (王国平) G, Wang (王雁翔) Y, Wang (王亚琴) YQ, Waqas M, Wèi (魏太云) T, Wen (温少华) S, Whitfield AE, Williams JV, Wolf YI, Wu (吴建祥) JX, Xu (徐雷) L, Yanagisawa (栁澤広宣) H, Yang (杨彩霞) C, Yang (杨作坤) Z, Zerbini FM, Zhai (翟立峰) L, Zhang YZ, Zhang (张松) S, Zhang (张靖国) J, Zhang (张哲) Z, Zhou (周雪平) X. Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Arch Virol 2021; 166:3567-3579. [PMID: 34786611 PMCID: PMC11078012 DOI: 10.1007/s00705-021-05266-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Jens H. Kuhn
- Integrated Research Facility at Fort Detrick, National
Institute of Allergy and Infectious Diseases, National Institutes of Health,
Frederick, MD, USA
| | - Scott Adkins
- United States Department of Agriculture, Agricultural
Research Service, US Horticultural Research Laboratory, Fort Pierce, FL, USA
| | - Bernard R. Agwanda
- Zoology Department, National Museums of Kenya, Nairobi,
Kenya
- Jomo Kenyatta University of Agriculture &
Technology, Nairobi, Kenya
| | - Rim Al Kubrusli
- Division Phytomedicine, Faculty of Life Sciences,
Humboldt-Universität zu Berlin, Berlin, Germany
| | | | - Gaya K. Amarasinghe
- Department of Pathology and Immunology, Washington
University School of Medicine, St. Louis, MO, USA
| | | | - María A. Ayllón
- Centro de Biotecnología y Genómica de
Plantas, Universidad Politécnica de Madrid—Instituto Nacional de
Investigación y Tecnología Agraria y Alimentaria, Campus de
Montegancedo, Pozuelo de Alarcón, Madrid, Spain
- Departamento de Biotecnología-Biología
Vegetal, Escuela Técnica Superior de Ingeniería Agronómica,
Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Madrid,
Spain
| | - Justin Bahl
- Center for Ecology of Infectious Diseases, Department of
Infectious Diseases, Department of Epidemiology and Biostatistics, Insitute of
Bioinformatics, University of Georgia, Athens, GA, USA
| | - Anne Balkema-Buschmann
- Institute of Novel and Emerging Infectious Diseases,
Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health,
Greifswald-Insel Riems, Germany
| | - Matthew J. Ballinger
- Department of Biological Sciences, Mississippi State
University, Mississippi State, MS, USA
| | - Christopher F. Basler
- Center for Microbial Pathogenesis, Institute for
Biomedical Sciences, Georgia State University, Atlanta, GA, USA
| | - Sina Bavari
- Edge BioInnovation Consulting and Mgt, Frederick, MD,
USA
| | - Martin Beer
- Institute of Diagnostic Virology,
Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | | | - Andrew J. Bennett
- Genomics and Bioinformatics Department, Biological
Defense Research Directorate, Naval Medical Research Center–Frederick, Fort
Detrick, Frederick, MD, USA
| | | | - Éric Bergeron
- Viral Special Pathogens Branch, Division of
High-Consequence Pathogens and Pathology, Centers for Disease Control and
Prevention, Atlanta, GA, USA
| | - Brian H. Bird
- School of Veterinary Medicine, One Health Institute,
University of California, Davis, Davis, CA, USA
| | - Carol D. Blair
- Department of Microbiology, Immunology and Pathology,
Colorado State University, Fort Collins, CO, USA
| | - Kim R. Blasdell
- Commonwealth Scientific and Industrial Research
Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, VIC,
Australia
| | | | - Jamie Bojko
- School of Health and Life Sciences, Teesside University,
Middlesbrough TS1 3BX, UK
- National Horizons Centre, Teesside University,
Darlington DL1 1HG, UK
| | | | - Steven Bradfute
- University of New Mexico Health Sciences Center,
Albuquerque, NM, USA
| | - Rachel Breyta
- University of Washington, Seattle, WA, USA
- US Geological Survey, Western Fisheries Research
Center, Seattle, WA, USA
| | - Thomas Briese
- Center for Infection and Immunity, and Department of
Epidemiology, Mailman School of Public Health, Columbia University, New York, NY,
USA
| | - Paul A. Brown
- Laboratory of Ploufragan-Plouzané-Niort, French
Agency for Food, Environmental and Occupational Heath Safety ANSES, Ploufragan,
France
| | - Judith K. Brown
- School of Plant Sciences, University of Arizona, Tucson,
AZ, USA
| | - Ursula J. Buchholz
- RNA Viruses Section, Laboratory of Infectious Diseases,
National Institute of Allergy and Infectious Diseases, National Institutes of
Health, Bethesda, MD, USA
| | - Michael J. Buchmeier
- Department of Molecular Biology and Biochemistry,
University of California, Irvine, Irvine, CA, USA
| | - Alexander Bukreyev
- Galveston National Laboratory, The University of Texas
Medical Branch at Galveston, Galveston, TX, USA
| | - Felicity Burt
- Division of Virology, National Health Laboratory Service
and Division of Virology, University of the Free State, Bloemfontein, Republic of
South Africa
| | - Carmen Büttner
- Division Phytomedicine, Faculty of Life Sciences,
Humboldt-Universität zu Berlin, Berlin, Germany
| | | | - Mengji Cao (曹孟籍)
- National Citrus Engineering and Technology Research
Center, Citrus Research Institute, Southwest University, Beibei, Chongqing,
People’s Republic of China
| | - Inmaculada Casas
- Respiratory Virus and Influenza Unit, National
Microbiology Center, Instituto de Salud Carlos III, Madrid, Spain
| | - Kartik Chandran
- Department of Microbiology and Immunology, Albert
Einstein College of Medicine, Bronx, NY, USA
| | - Rémi N. Charrel
- Unité des Virus Emergents (Aix-Marseille Univ, IRD
190, Inserm 1207, IHU Méditerranée Infection), Marseille, France
| | - Qi Cheng
- State Key Laboratory of Rice Biology, Institute of
Biotechnology, Zhejiang University, Hangzhou, People’s Republic of
China
| | - Yuya Chiaki (千秋祐也)
- Grape and Persimmon Research Station, Institute of Fruit
tree and Tea Science, NARO, Higashihiroshima, Hiroshima, Japan
| | - Marco Chiapello
- Institute for Sustainable Plant Protection, National
Research Council of Italy (CNR), Strada delle Cacce 73, 10135 Turin, Italy
| | - Il-Ryong Choi
- Plant Breeding Genetics and Biotechnology Division and
International Rice Research Institute, Los Baños, Philippines
| | - Marina Ciuffo
- Institute for Sustainable Plant Protection, National
Research Council of Italy (CNR), Strada delle Cacce 73, 10135 Turin, Italy
| | | | - Ian Crozier
- Clinical Monitoring Research Program Directorate,
Frederick National Laboratory for Cancer Research, Frederick, MD, USA
| | - Elena Dal Bó
- CIDEFI, Facultad de Ciencias Agrarias y Forestales,
Universidad de La Plata, La Plata, Argentina
| | - Juan Carlos de la Torre
- Department of Immunology and Microbiology IMM-6, The
Scripps Research Institute, La Jolla, CA, USA
| | - Xavier de Lamballerie
- Unité des Virus Emergents (Aix-Marseille Univ, IRD
190, Inserm 1207, IHU Méditerranée Infection), Marseille, France
| | - Rik L. de Swart
- Department Viroscience, Erasmus MC, University Medical
Centre Rotterdam, Rotterdam, The Netherlands
| | - Humberto Debat
- Centro de Investigaciones Agropecuarias, Instituto
Nacional de Tecnología Agropecuaria (IPAVE-CIAP-INTA), Córdoba,
Argentina
- Unidad de Fitopatología y Modelización
Agrícola, Consejo Nacional de Investigaciones Científicas y
Técnicas (UFYMA-CONICET), Córdoba, Argentina
| | - Nolwenn M. Dheilly
- UMR 1161 Virology ANSES/INRAE/ENVA, ANSES Animal Health
Laboratory, 94704 Maisons-Alfort, France
| | | | - Nicholas Di Paola
- United States Army Medical Research Institute of
Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Francesco Di Serio
- Istituto per la Protezione Sostenibile delle Piante,
Consiglio Nazionale delle Ricerche, Turin, Italy
| | - Ralf G. Dietzgen
- Queensland Alliance for Agriculture and Food Innovation,
The University of Queensland, St. Lucia, QLD, Australia
| | - Michele Digiaro
- CIHEAM, Istituto Agronomico Mediterraneo di Bari,
Valenzano, Italy
| | - Olga Dolnik
- Institute of Virology, Philipps University Marburg,
Marburg, Germany
| | - Michael A. Drebot
- Zoonotic Diseases and Special Pathogens, National
Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada
| | - J. Felix Drexler
- Institute of Virology,
Charité-Universitätsmedizin Berlin, Corporate Member of Freie
Universität Berlin, Humboldt Universität Berlin, Berlin, Germany
| | - William G. Dundon
- Animal Production and Health Laboratory, Joint FAO/IAEA
Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear
Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - W. Paul Duprex
- School of Medicine, University of Pittsburgh, Pittsburgh,
PA, USA
| | | | - John M. Dye
- United States Army Medical Research Institute of
Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | | | | | | | - Koray Ergünay
- Virology Unit, Department of Medical Microbiology,
Hacettepe University Faculty of Medicine, Ankara, Turkey
| | - Hugh W. Ferguson
- School of Veterinary Medicine, St. George’s
University, True Blue, Grenada
| | | | - Marco Forgia
- Institute for sustainable plant protection, CNR, Turin,
Italy
| | | | - Jana Fránová
- Plant Virology Department, Institute of Plant Molecular
Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic
| | | | - Jingjing Fu (付晶晶)
- College of Life Science and Engineering, Shenyang
University, Shenyang, Liaoning, People’s Republic of China
| | - Stephanie Fürl
- Albrecht Daniel Thaer-Institute for Crop and Animal
Sciences, Division Phytomedicine, Humboldt-Universität zu Berlin, Berlin,
Germany
| | - Selma Gago-Zachert
- Institute of Biochemistry and Biotechnology, Martin
Luther University Halle-Wittenberg, Halle/Saale, Germany
| | - George Fú Gāo
- National Institute for Viral Disease Control and
Prevention, Chinese Center for Disease Control and Prevention, Beijing,
People’s Republic of China
| | - María Laura García
- nstituto de Biotecnología y Biología
Molecular, Facultad de Ciencias Exactas, I, CONICET UNLP, La Plata, Argentina
| | | | - Aura R. Garrison
- United States Army Medical Research Institute of
Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Thomas Gaskin
- Division Phytomedicine, Faculty of Life Sciences,
Humboldt-Universität zu Berlin, Berlin, Germany
- Landwirtschaft und Flurneuordnung, Landesamt für
ländliche Entwicklung, Frankfurt (Oder), Germany
| | - Jean-Paul J. Gonzalez
- Department of Microbiology and Immunology, Division of
Biomedical Graduate Research Organization, School of Medicine, Georgetown
University, Washington, DC 20057, USA
- Centaurus Biotechnologies, CTP, Manassas, VA, USA
| | - Anthony Griffiths
- Department of Microbiology and National Emerging
Infectious Diseases Laboratories, Boston University School of Medicine, Boston, MA,
USA
| | - Tony L. Goldberg
- Department of Pathobiological Sciences, School of
Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA
| | - Martin H. Groschup
- Institute of Novel and Emerging Infectious Diseases,
Friedric h-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Stephan Günther
- WHO Collaborating Centre for Arboviruses and Hemorrhagic
Fever Reference and Research, Department of Virology, Bernhard-Nocht Institute for
Tropical Medicine, Hamburg, Germany
| | - Roy A. Hall
- Australian Infectious Diseases Research Centre, School of
Chemistry and Molecular Biosciences, The University of Queensland, Brisbane,
Australia
| | - John Hammond
- Floral and Nursery Plants Research Unit, United States
Department of Agriculture, Agricultural Research Service, USNA, Beltsville, MD,
USA
| | - Tong Han (韩彤)
- College of Life Science and Engineering, Shenyang
University, Shenyang, Liaoning, People’s Republic of China
| | - Jussi Hepojoki
- Department of Virology, University of Helsinki, Medicum,
Helsinki, Finland
- Institute of Veterinary Pathology, Vetsuisse Faculty,
University of Zurich, Zurich, Switzerland
| | - Roger Hewson
- London School of Hygeine and Tropical Medicine, London,
UK
| | - Jiang Hong (洪健)
- Analysis Center of Agrobiology and Environmental
Sciences, Zhejiang University, Hangzhou, People’s Republic of China
| | - Ni Hong (洪霓)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Seiji Hongo
- Department of Infectious Diseases, Yamagata University
Faculty of Medicine, Yamagata, Japan
| | - Masayuki Horie (堀江真行)
- Hakubi Center for Advanced Research, Kyoto University,
Kyoto, Japan
- Division of Veterinary Sciences, Graduate School of
Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Japan
| | | | - Tao Hu
- State Key Laboratory of Rice Biology, Institute of
Biotechnology, Zhejiang University, Hangzhou, People’s Republic of
China
| | - Holly R. Hughes
- Centers for Disease Control and Prevention, Fort Collins,
CO, USA
| | - Florian Hüttner
- Division Phytomedicine, Faculty of Life Sciences,
Humboldt-Universität zu Berlin, Berlin, Germany
| | - Timothy H. Hyndman
- School of Veterinary Medicine, Murdoch University,
Murdoch, WA, Australia
| | - M. Ilyas
- Entomology and Plant Pathology, North Carolina State
University, Raleigh, NC, USA
| | | | - Dàohóng Jiāng (姜道宏)
- State Key Laboratory of Agricultural Microbiology,
Huazhong Agricultural University, Wuhan, Hubei Province, People’s Republic of
China
| | - Gilda B. Jonson
- Rice Breeding Innovations Platform, International Rice
Research Institute, Los Baños, Laguna, Philippines
| | - Sandra Junglen
- Institute of Virology,
Charité-Universitätsmedizin Berlin, Corporate Member of Free
University Berlin, Humboldt-University Berlin, and Berlin Institute of Health,
Berlin, Germany
- German Centre for Infection Research, Berlin,
Germany
| | - Fujio Kadono (上遠野冨士夫)
- Department of Clinical Plant Science, Faculty of
Bioscience and Applied Chemistry, Hosei University, Koganei, Tokyo, Japan
| | - Karia H. Kaukinen
- Pacific Biological Station, Fisheries and Oceans Canada,
Nanaimo, BC, Canada
| | | | - Boris Klempa
- Institute of Virology, Biomedical Research Center, Slovak
Academy of Sciences, Bratislava, Slovakia
| | - Jonas Klingström
- Center for Infectious Medicine, Department of Medicine
Huddinge, Karolinska Institutet, Karolinska University Hospital, Stockholm,
Sweden
| | - Gary Kobinger
- Department of Microbiology, Immunology and Infectious
Diseases, Université Laval, Quebec City, Canada
| | - Igor Koloniuk
- Plant Virology Department, Institute of Plant Molecular
Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic
| | - Hideki Kondō (近藤秀樹)
- Institute of Plant Science and Resources, Okayama
University, Kurashiki, Japan
| | - Eugene V. Koonin
- National Center for Biotechnology Information, National
Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - Mart Krupovic
- Archaeal Virology Unit, Institut Pasteur, Paris,
France
| | | | - Gael Kurath
- US Geological Survey Western Fisheries Research Center,
Seattle, WA, USA
| | - Lies Laenen
- KU Leuven, Rega Institute, Zoonotic Infectious Diseases
unit, Leuven, Belgium
- Department of Laboratory Medicine, University Hospitals
Leuven, Leuven, Belgium
| | - Amy J. Lambert
- Centers for Disease Control and Prevention, Fort Collins,
CO, USA
| | | | - Benhur Lee
- Department of Microbiology, Icahn School of Medicine at
Mount Sinai, New York, NY, USA
| | | | - Eric M. Leroy
- MIVEGEC (IRD-CNRS-Montpellier university) Unit, French
National Research Institute for Sustainable Development (IRD), Montpellier,
France
| | - Shaorong Li (李邵蓉)
- Fisheries and Oceans Canada, Pacific Biological
Station, 3190 Hammond Bay Road, Nanaimo, BC V9T 6N7, Canada
| | - Longhui Li (李龙辉)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Jiànróng Lǐ (李建荣)
- Department of Veterinary Biosciences, College of
Veterinary Medicine, The Ohio State University, Columbus, OH, USA
| | - Huazhen Liu (刘华珍)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Igor S. Lukashevich
- Department of Pharmacology and Toxicology, School of
Medicine, and the Center for Predictive Medicine for Biodefense and Emerging
Infectious Diseases, University of Louisville, Louisville, KY, USA
| | - Piet Maes
- KU Leuven, Rega Institute, Zoonotic Infectious Diseases
unit, Leuven, Belgium
| | | | - Marco Marklewitz
- Institute of Virology,
Charité-Universitätsmedizin Berlin, Corporate Member of Free
University Berlin, Humboldt-University Berlin, and Berlin Institute of Health,
Berlin, Germany
- German Center for Infection Research (DZIF), Berlin,
Germany
| | - Sergio H. Marshall
- Pontificia Universidad Católica de
Valparaíso, Campus Curauma, Valparaíso, Chile
| | - Shin-Yi L. Marzano
- United States Department of Agriculture, Agricultural
Research Service, Washington, USA
| | - Sebastien Massart
- Gembloux Agro-Bio Tech, TERRA, Plant Pathology
Laboratory, Liège University, Liege, Belgium
| | | | - Michael Melzer
- Plant and Environmental Protection Sciences, University
of Hawai’i at Mānoa, Honolulu, HI, USA
| | | | - Kristina M. Miller
- Pacific Biological Station, Fisheries and Oceans Canada,
Nanaimo, BC, Canada
| | - Tobi J. Ming
- Molecular Genetics, Pacific Biological Station,
Department of Fisheries and Oceans, Nanaimo, Canada
| | | | - Gideon J. Mordecai
- Department of Medicine, Univeristy of British Columbia,
Vancouver, Canada
| | | | - Elke Mühlberger
- Department of Microbiology and National Emerging
Infectious Diseases Laboratories, Boston University School of Medicine, Boston, MA,
USA
| | - Rayapati Naidu
- Department of Plant Pathology, Irrigated Agricultural
Research and Extension Center, Washington State University, Prosser, WA, USA
| | | | - José A. Navarro
- Instituto de Biología Molecular y Celular de
Plantas, Universitat Politècnica de València-Consejo Superior de
Investigaciones Científicas, Valencia, Spain
| | | | - Gabriele Neumann
- Influenza Research Institute, Department of
Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA
| | - Norbert Nowotny
- Institute of Virology, University of Veterinary
Medicine Vienna, Vienna, Austria
- College of Medicine, Mohammed Bin Rashid University of
Medicine and Health Sciences, Dubai, United Arab Emirates
| | | | | | - Gustavo Palacios
- United States Army Medical Research Institute of
Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Vicente Pallás
- Instituto de Biología Molecular y Celular de
Plantas (IBMCP), Consejo Superior de Investigaciones Cientificas-Universidad
Politécnica de Valencia, Valencia, Spain
| | - Bernadett Pályi
- National Biosafety Laboratory, National Public Health
Center, Budapest, Hungary
| | - Anna Papa (Άννα Παπά)
- National Reference Centre for Arboviruses and
Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Aristotle
University of Thessaloniki, Thessaloniki, Greece
| | - Sofia Paraskevopoulou (Παρασκευοπούλου Σοφία)
- Institute of Virology,
Charité-Universitätsmedizin Berlin, corporate member of Freie
Universität Berlin, Humboldt-Universität zu Berlin, and Berlin
Institute of Health, Berlin, Germany
| | - Adam C. Park
- University of Hawaii, Honolulu, HI, USA
- Hawaii Department of Agriculture, Honolulu, HI,
USA
| | - Colin R. Parrish
- Baker Institute for Animal Health, College of
Veterinary Medicine, Cornell University, Ithaca, NY, USA
| | - David A. Patterson
- Fisheries and Oceans Canada, Resource and Environmental
Management, Simon Fraser University, Burnaby, BC, Canada
| | - Alex Pauvolid-Corrêa
- Department of Veterinary Integrated Biosciences and
Department of Entomology, Texas A&M University, College Station, USA
- Laboratory of Respiratory Viruses and Measles, Fiocruz,
Rio de Janeiro, Brazil
| | - Janusz T. Pawęska
- Center for Emerging Zoonotic and Parasitic Diseases,
National Institute for Communicable Diseases of the National Health Laboratory
Service, Sandringham-Johannesburg, Gauteng, South Africa
| | - Susan Payne
- Department of Veterinary Pathobiology, College of
Veterinary Medicine and Biomedical Sciences, Texas A&M University, College
Station, TX, USA
| | - Carlotta Peracchio
- Institute for Sustainable Plant Protection, National
Research Council of Italy (CNR), Strada delle Cacce 73, 10135 Turin, Italy
| | - Daniel R. Pérez
- Department of Population Health, College of Veterinary
Medicine, University of Georgia, Athens, GA, USA
| | - Thomas S. Postler
- Department of Microbiology and Immunology, Vagelos
College of Physicians and Surgeons, Columbia University Irving Medical Center, New
York, NY 10032, USA
| | - Liying Qi (亓立莹)
- Jiangxi Academy of Agricultural Sciences, Nanchang,
Jiangxi, People’s Republic of China
| | | | - Renato O. Resende
- Departamento de Biologia Celular, Universidade de
Brasília, Brasília, Brazil
| | - Carina A. Reyes
- Instituto de Biotecnología y Biología
Molecular, CCT-La Plata, CONICET-UNLP, La Plata, Buenos Aires, Argentina
| | - Bertus K. Rima
- Centre for Experimental Medicine, School of Medicine,
Dentistry and Biomedical Sciences, The Queen’s University of Belfast,
Belfast, Northern Ireland, UK
| | - Gabriel Robles Luna
- Instituto de Biotecnología y Biología
Molecular, CCT-La Plata, CONICET-UNLP, La Plata, Buenos Aires, Argentina
| | - Víctor Romanowski
- Instituto de Biotecnología y Biología
Molecular, Centro Cientifico Technológico-La Plata, Consejo Nacional de
Investigaciones Científico Tecnológico—Universidad Nacional de
La Plata, La Plata, Argentina
| | - Paul Rota
- National Center for Immunization and Respiratory
Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Dennis Rubbenstroth
- Institute of Diagnostic Virology,
Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Luisa Rubino
- Consiglio Nazionale delle Ricerche, Istituto per la
Protezione Sostenibile delle Piante, Bari, Italy
| | - Jonathan A. Runstadler
- Department of Infectious Disease and Global Health,
Tufts University Cummings School of Veterinary Medicine, 200 Westboro Road, North
Grafton, MA 01536, USA
| | - Sead Sabanadzovic
- Department of Biochemistry, Molecular Biology,
Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS,
USA
| | | | - Maria S. Salvato
- Institute of Human Virology, University of Maryland
School of Medicine, Baltimore, MA, USA
| | - Rosemary Sang
- International Centre of Insect Physiology and Ecology,
Nairobi, Kenya
| | - Takahide Sasaya (笹谷孝英)
- Western Region Agricultural Research Center, National
Agriculture and Food Research Organization, Fukuyama, Japan
| | - Angela D. Schulze
- Molecular Genetics Lab, Pacific Biological Station,
Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Martin Schwemmle
- Faculty of Medicine, University Medical
Center-University Freiburg, Freiburg, Germany
| | - Mang Shi (施莽)
- Sun Yat-sen University, Shenzhen, People’s
Republic of China
| | - Xiǎohóng Shí (石晓宏)
- MRC-University of Glasgow Centre for Virus Research,
Glasgow, Scotland, UK
| | - Zhènglì Shí (石正丽)
- CAS Key Laboratory of Special Pathogens, Wuhan
Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of
Sciences, Wuhan, Hubei, People’s Republic of China
| | | | - Yukio Shirako
- Asian Center for Bioresources and Environmental
Sciences, University of Tokyo, Tokyo, Japan
| | - Stuart G. Siddell
- School of Cellular and Molecular Medicine, University
of Bristol, Bristol, UK
| | - Peter Simmonds
- Nuffield Department of Medicine, University of Oxford,
Oxford, UK
| | - Manuela Sironi
- Bioinformatics Unit, Scientific Institute IRCCS
“E. Medea”, Bosisio Parini, Italy
| | - Guy Smagghe
- Faculty of Bioscience Engineering, Department of Plant
and Crops, Ghent University, Ghent, Belgium
| | - Sophie Smither
- CBR Division, DSTL, Porton Down, Salisbury, Wiltshire,
UK
| | - Jin-Won Song (송진원)
- Department of Microbiology, College of Medicine, Korea
University, Seoul, Republic of Korea
| | - Kirsten Spann
- School of Biomedical Sciences, Faculty of Health,
Queensland University of Technology, Brisbane, QLD, Australia
| | - Jessica R. Spengler
- Viral Special Pathogens Branch, Division of
High-Consequence Pathogens and Pathology, Centers for Disease Control and
Prevention, Atlanta, USA
| | - Mark D. Stenglein
- Department of Microbiology, Immunology, and Pathology,
College of Veterinary Medicine and Biomedical Sciences, Colorado State University,
Fort Collins, CO, USA
| | - David M. Stone
- Centre for Environment, Fisheries and Aquaculture
Science, Weymouth, Dorset, UK
| | | | - Curtis A. Suttle
- Departments of Earth, Ocean and Atmospheric Sciences,
Microbiology and Immunology, and Botany, and the Institute for Oceans and Fisheries,
University of British Columbia, Vancouver, Canada
| | - Amy Tabata
- Pacific Biological Station, Fisheries and Oceans Canada,
Nanaimo, BC, Canada
| | - Ayato Takada (高田礼人)
- Division of Global Epidemiology, Research Center for
Zoonosis Control, Hokkaido University, Sapporo, Japan
| | | | | | - Amy Teffer
- Department of Forest Sciences, University of British
Columbia, Vancouver, Canada
| | - Robert B. Tesh
- The University of Texas Medical Branch, Galveston, TX,
USA
| | | | | | - Keizō Tomonaga (朝長啓造)
- Institute for Frontier Life and Medical Sciences
(inFront), Kyoto University, Kyoto, Japan
| | - Noël Tordo
- Unité des Stratégies Antivirales, WHO
Collaborative Centre for Viral Haemorrhagic Fevers and Arboviruses, OIE Reference
Laboratory for RVFV & CCHFV, Institut Pasteur, Paris, France
| | - Baldwyn Torto
- International Centre of Insect Physiology and Ecology,
Nairobi, Kenya
| | - Jonathan S. Towner
- Viral Special Pathogens Branch, Division of
High-Consequence Pathogens Pathology, National Center for Emerging and Zoonotic
Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA,
USA
- Institut Pasteur de Guinée, Conakry,
Guinea
| | - Shinya Tsuda (津田新哉)
- Department of Clinical Plant Science, Faculty of
Bioscience and Applied Chemistry, Hosei University, Koganei, Tokyo, Japan
| | - Changchun Tu (涂长春)
- Changchun Veterinary Research Institute, Chinese
Academy of Agricultural Sciences, Changchun, Jilin Province, People’s
Republic of China
| | - Massimo Turina
- National Institute of Optics, National Research Council
of Italy (INO-CNR), Via Branze 45, 25123Brescia, Italy
| | - Ioannis Tzanetakis
- Department of Entomology and Plant Pathology, Division
of Agriculture, University of Arkansas System,, Fayetteville, AR 72701, USA
| | | | - Tomio Usugi (宇杉富雄)
- Central Region Agricultural Research Center, NARO,
Tsukuba, Ibaraki, Japan
| | - Anna Maria Vaira
- Institute for Sustainable Plant Protection, National
Research Council of Italy (CNR), Strada delle Cacce 73, 10135 Turin, Italy
| | - Marta Vallino
- Institute for Sustainable Plant Protection, National
Research Council of Italy (CNR), Strada delle Cacce 73, 10135 Turin, Italy
| | - Bernadette van den Hoogen
- Department of Viroscience, Erasmus MC, University
Medical Centre Rotterdam, Rotterdam, The Netherlands
| | - Arvind Varsani
- The Biodesign Center for Fundamental and Applied
Microbiomics, Center for Evolution and Medicine School of Life Sciences, Arizona
State University, Tempe, AZ, USA
- Structural Biology Research Unit, Department of
Clinical Laboratory Sciences, University of Cape Town, Observatory, Cape Town, South
Africa
| | | | - Martin Verbeek
- Wageningen University and Research, Biointeractions and
Plant Health, Wageningen, The Netherlands
| | - Susanne von Bargen
- Division Phytomedicine, Faculty of Life Sciences,
Humboldt-Universität zu Berlin, Berlin, Germany
| | - Jiro Wada
- Integrated Research Facility at Fort Detrick, National
Institute of Allergy and Infectious Diseases, National Institutes of Health,
Frederick, MD, USA
| | - Victoria Wahl
- National Biodefense Analysis and Countermeasures
Center, Fort Detrick, Frederick, MD, USA
| | - Peter J. Walker
- School of Chemistry and Molecular Biosciences,
University of Queensland, St. Lucia, QLD, Australia
| | - Lin-Fa Wang (王林发)
- Programme in Emerging Infectious Diseases, Duke-NUS
Medical School, Singapore, Singapore
| | - Guoping Wang (王国平)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Yanxiang Wang (王雁翔)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Ya-qin Wang (王亚琴)
- State Key Laboratory of Rice Biology, Institute of
Biotechnology, Zhejiang University, Hangzhou, People’s Republic of
China
| | - Muhammad Waqas
- Key Laboratory of Crop Disease Monitoring and Safety
Control in Hubei Province, College of Plant Science and Technology, Huazhong
Agricultural University, Wuhan, Hubei, People’s Republic of China
| | - Tàiyún Wèi (魏太云)
- Fujian Province Key Laboratory of Plant Virology,
Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou,
Fujian, People’s Republic of China
| | - Shaohua Wen (温少华)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Anna E. Whitfield
- Department of Entomology and Plant Pathology, North
Carolina State University, Raleigh, NC, USA
| | - John V. Williams
- School of Medicine, University of Pittsburgh,
Pittsburgh, PA, USA
| | - Yuri I. Wolf
- National Center for Biotechnology Information, National
Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - Jiang-xiang Wu (吴建祥)
- State Key Laboratory of Rice Biology, Institute of
Biotechnology, Zhejiang University, Hangzhou, People’s Republic of
China
| | - Lei Xu (徐雷)
- Jiangxi Academy of Agricultural Sciences, Nanchang,
Jiangxi, People’s Republic of China
| | | | - Caixia Yang (杨彩霞)
- College of Life Science and Engineering, Shenyang
University, Shenyang, Liaoning, People’s Republic of China
| | - Zuokun Yang (杨作坤)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - F. Murilo Zerbini
- epartamento de Fitopatologia, Instituto de
Biotecnologia Aplicada à Agropecuária, Universidade Federal de
Viçosa, Viçosa, Minas Gerais, Brazil
| | - Lifeng Zhai (翟立峰)
- Key Laboratory of Horticultural Plant Biology, Ministry
of Education, Wuhan 430070, Hubei, People’s Republic of China
| | - Yong-Zhen Zhang
- National Institute for Communicable Disease Control and
Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing,
People’s Republic of China
- Shanghai Public Health Clinical Center & Institutes
of Biomedical Sciences, Fudan University, Shanghai, People’s Republic of
China
| | - Song Zhang (张松)
- National Citrus Engineering and Technology Research
Center, Citrus Research Institute, Southwest University, Beibei, Chongqing,
People’s Republic of China
| | - Jinguo Zhang (张靖国)
- National Sand Pear Germplasm Repository in Wuchang,
Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan,
Hubei, People’s Republic of China
| | - Zhe Zhang (张哲)
- Key Lab of Plant Pathology of Hubei Province, College of
Plant Science and Technology, Huazhong Agricultural University, Wuhan,
People’s Republic of China
| | - Xueping Zhou (周雪平)
- State Key Laboratory for Biology of Plant Diseases and
Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural
Sciences, Beijing, People’s Republic of China
| |
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Kuhn JH, Adkins S, Agwanda BR, Al Kubrusli R, Alkhovsky SV, Amarasinghe GK, Avšič-Županc T, Ayllón MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Basler CF, Bavari S, Beer M, Bejerman N, Bennett AJ, Bente DA, Bergeron É, Bird BH, Blair CD, Blasdell KR, Blystad DR, Bojko J, Borth WB, Bradfute S, Breyta R, Briese T, Brown PA, Brown JK, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Büttner C, Calisher CH, Cao M, Casas I, Chandran K, Charrel RN, Cheng Q, Chiaki Y, Chiapello M, Choi IR, Ciuffo M, Clegg JCS, Crozier I, Dal Bó E, de la Torre JC, de Lamballerie X, de Swart RL, Debat H, Dheilly NM, Di Cicco E, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolnik O, Drebot MA, Drexler JF, Dundon WG, Duprex WP, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergünay K, Ferguson HW, Fooks AR, Forgia M, Formenty PBH, Fránová J, Freitas-Astúa J, Fu J, Fürl S, Gago-Zachert S, Gāo GF, García ML, García-Sastre A, Garrison AR, Gaskin T, Gonzalez JPJ, Griffiths A, Goldberg TL, Groschup MH, Günther S, Hall RA, Hammond J, Han T, Hepojoki J, Hewson R, Hong J, Hong N, Hongo S, Horie M, Hu JS, Hu T, Hughes HR, Hüttner F, Hyndman TH, Ilyas M, Jalkanen R, Jiāng D, Jonson GB, Junglen S, Kadono F, Kaukinen KH, Kawate M, Klempa B, Klingström J, Kobinger G, Koloniuk I, Kondō H, Koonin EV, Krupovic M, Kubota K, Kurath G, Laenen L, Lambert AJ, Langevin SL, Lee B, Lefkowitz EJ, Leroy EM, Li S, Li L, Lǐ J, Liu H, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Marzano SYL, Massart S, McCauley JW, Melzer M, Mielke-Ehret N, Miller KM, Ming TJ, Mirazimi A, Mordecai GJ, Mühlbach HP, Mühlberger E, Naidu R, Natsuaki T, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Olmedo-Velarde A, Palacios G, Pallás V, Pályi B, Papa A, Paraskevopoulou S, Park AC, Parrish CR, Patterson DA, Pauvolid-Corrêa A, Pawęska JT, Payne S, Peracchio C, Pérez DR, Postler TS, Qi L, Radoshitzky SR, Resende RO, Reyes CA, Rima BK, Luna GR, Romanowski V, Rota P, Rubbenstroth D, Rubino L, Runstadler JA, Sabanadzovic S, Sall AA, Salvato MS, Sang R, Sasaya T, Schulze AD, Schwemmle M, Shi M, Shí X, Shí Z, Shimomoto Y, Shirako Y, Siddell SG, Simmonds P, Sironi M, Smagghe G, Smither S, Song JW, Spann K, Spengler JR, Stenglein MD, Stone DM, Sugano J, Suttle CA, Tabata A, Takada A, Takeuchi S, Tchouassi DP, Teffer A, Tesh RB, Thornburg NJ, Tomitaka Y, Tomonaga K, Tordo N, Torto B, Towner JS, Tsuda S, Tu C, Turina M, Tzanetakis IE, Uchida J, Usugi T, Vaira AM, Vallino M, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, von Bargen S, Wada J, Wahl V, Walker PJ, Wang LF, Wang G, Wang Y, Wang Y, Waqas M, Wèi T, Wen S, Whitfield AE, Williams JV, Wolf YI, Wu J, Xu L, Yanagisawa H, Yang C, Yang Z, Zerbini FM, Zhai L, Zhang YZ, Zhang S, Zhang J, Zhang Z, Zhou X. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Arch Virol 2021; 166:3513-3566. [PMID: 34463877 PMCID: PMC8627462 DOI: 10.1007/s00705-021-05143-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.
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Affiliation(s)
- Jens H Kuhn
- Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, MD, USA.
| | - Scott Adkins
- United States Department of Agriculture, Agricultural Research Service, US Horticultural Research Laboratory, Fort Pierce, FL, USA
| | - Bernard R Agwanda
- Zoology Department, National Museums of Kenya, Nairobi, Kenya
- Jomo Kenyatta University of Agriculture & Technology, Nairobi, Kenya
| | - Rim Al Kubrusli
- Division Phytomedicine, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Sergey V Alkhovsky
- D.I. Ivanovsky Institute of Virology of N.F. Gamaleya National Center on Epidemiology and Microbiology of Ministry of Health of Russian Federation, Moscow, Russia
| | - Gaya K Amarasinghe
- Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA
| | | | - María A Ayllón
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Campus de Montegancedo, Pozuelo de Alarcón, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Madrid, Spain
| | - Justin Bahl
- Center for Ecology of Infectious Diseases, Department of Infectious Diseases, Department of Epidemiology and Biostatistics, Insitute of Bioinformatics, University of Georgia, Athens, GA, USA
| | - Anne Balkema-Buschmann
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Matthew J Ballinger
- Department of Biological Sciences, Mississippi State University, Mississippi State, MS, USA
| | - Christopher F Basler
- Center for Microbial Pathogenesis, Institute for Biomedical Sciences, Georgia State University, Atlanta, GA, USA
| | - Sina Bavari
- Edge BioInnovation Consulting and Mgt, Frederick, MD, USA
| | - Martin Beer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | | | - Andrew J Bennett
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center-Frederick, Fort Detrick, Frederick, MD, USA
| | | | - Éric Bergeron
- Viral Special Pathogens Branch, Division of High-Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Brian H Bird
- School of Veterinary Medicine, One Health Institute, University of California, Davis, Davis, CA, USA
| | - Carol D Blair
- Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, USA
| | - Kim R Blasdell
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, VIC, Australia
| | | | - Jamie Bojko
- School of Health and Life Sciences, Teesside University, Middlesbrough, TS1 3BX, UK
- National Horizons Centre, Teesside University, Darlington, DL1 1HG, UK
| | | | - Steven Bradfute
- University of New Mexico Health Sciences Center, Albuquerque, NM, USA
| | - Rachel Breyta
- University of Washington, Seattle, WA, USA
- US Geological Survey, Western Fisheries Research Center, Seattle, WA, USA
| | - Thomas Briese
- Center for Infection and Immunity, and Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY, USA
| | - Paul A Brown
- Laboratory of Ploufragan-Plouzané-Niort, French Agency for Food, Environmental and Occupational Heath Safety ANSES, Ploufragan, France
| | - Judith K Brown
- School of Plant Sciences, University of Arizona, Tucson, AZ, USA
| | - Ursula J Buchholz
- RNA Viruses Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
| | - Michael J Buchmeier
- Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA
| | - Alexander Bukreyev
- Galveston National Laboratory, The University of Texas Medical Branch at Galveston, Galveston, TX, USA
| | - Felicity Burt
- Division of Virology, National Health Laboratory Service and Division of Virology, University of the Free State, Bloemfontein, Republic of South Africa
| | - Carmen Büttner
- Division Phytomedicine, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
| | | | - Mengji Cao
- National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Beibei, Chongqing, People's Republic of China
| | - Inmaculada Casas
- Respiratory Virus and Influenza Unit, National Microbiology Center, Instituto de Salud Carlos III, Madrid, Spain
| | - Kartik Chandran
- Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA
| | - Rémi N Charrel
- Unité des Virus Emergents (Aix-Marseille Univ, IRD 190, Inserm 1207, IHU Méditerranée Infection), Marseille, France
| | - Qi Cheng
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, People's Republic of China
| | - Yuya Chiaki
- Grape and Persimmon Research Station, Institute of Fruit tree and Tea Science, NARO, Higashihiroshima, Hiroshima, Japan
| | - Marco Chiapello
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Strada delle Cacce 73, 10135, Turin, Italy
| | - Il-Ryong Choi
- Plant Breeding Genetics and Biotechnology Division and International Rice Research Institute, Los Baños, Philippines
| | - Marina Ciuffo
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Strada delle Cacce 73, 10135, Turin, Italy
| | | | - Ian Crozier
- Clinical Monitoring Research Program Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA
| | - Elena Dal Bó
- CIDEFI, Facultad de Ciencias Agrarias y Forestales, Universidad de La Plata, La Plata, Argentina
| | - Juan Carlos de la Torre
- Department of Immunology and Microbiology IMM-6, The Scripps Research Institute, La Jolla, CA, USA
| | - Xavier de Lamballerie
- Unité des Virus Emergents (Aix-Marseille Univ, IRD 190, Inserm 1207, IHU Méditerranée Infection), Marseille, France
| | - Rik L de Swart
- Department Viroscience, Erasmus MC, University Medical Centre Rotterdam, Rotterdam, The Netherlands
| | - Humberto Debat
- Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnología Agropecuaria (IPAVE-CIAP-INTA), Córdoba, Argentina
- Unidad de Fitopatología y Modelización Agrícola, Consejo Nacional de Investigaciones Científicas y Técnicas (UFYMA-CONICET), Córdoba, Argentina
| | - Nolwenn M Dheilly
- UMR 1161 Virology ANSES/INRAE/ENVA, ANSES Animal Health Laboratory, 94704, Maisons-Alfort, France
| | | | - Nicholas Di Paola
- United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Francesco Di Serio
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche, Bari, Italy
| | - Ralf G Dietzgen
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia, QLD, Australia
| | - Michele Digiaro
- CIHEAM, Istituto Agronomico Mediterraneo di Bari, Valenzano, Italy
| | - Olga Dolnik
- Institute of Virology, Philipps University Marburg, Marburg, Germany
| | - Michael A Drebot
- Zoonotic Diseases and Special Pathogens, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada
| | - J Felix Drexler
- Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt Universität Berlin, Berlin, Germany
| | - William G Dundon
- Animal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria
| | - W Paul Duprex
- School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA
| | | | - John M Dye
- United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Andrew J Easton
- School of Life Sciences, University of Warwick, Coventry, UK
| | - Hideki Ebihara
- Department of Molecular Medicine, Mayo Clinic, Rochester, MN, USA
| | | | - Koray Ergünay
- Virology Unit, Department of Medical Microbiology, Hacettepe University Faculty of Medicine, Ankara, Turkey
| | - Hugh W Ferguson
- School of Veterinary Medicine, St. George's University, True Blue, Grenada
| | | | - Marco Forgia
- Institute for sustainable plant protection, CNR, Turin, Italy
| | | | - Jana Fránová
- Plant Virology Department, Institute of Plant Molecular Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic
| | | | - Jingjing Fu
- College of Life Science and Engineering, Shenyang University, Shenyang, Liaoning, People's Republic of China
| | - Stephanie Fürl
- Albrecht Daniel Thaer-Institute for Crop and Animal Sciences, Division Phytomedicine, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Selma Gago-Zachert
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale, Germany
| | - George Fú Gāo
- National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China
| | - María Laura García
- nstituto de Biotecnología y Biología Molecular, Facultad de Ciencias Exactas, I, CONICET UNLP, La Plata, Argentina
| | | | - Aura R Garrison
- United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Thomas Gaskin
- Division Phytomedicine, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
- Landwirtschaft und Flurneuordnung, Landesamt für ländliche Entwicklung, Frankfurt (Oder), Germany
| | - Jean-Paul J Gonzalez
- Department of Microbiology and Immunology, Division of Biomedical Graduate Research Organization, School of Medicine, Georgetown University, Washington, DC, 20057, USA
- Centaurus Biotechnologies, CTP, Manassas, VA, USA
| | - Anthony Griffiths
- Department of Microbiology and National Emerging Infectious Diseases Laboratories, Boston University School of Medicine, Boston, MA, USA
| | - Tony L Goldberg
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA
| | - Martin H Groschup
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Stephan Günther
- WHO Collaborating Centre for Arboviruses and Hemorrhagic Fever Reference and Research, Department of Virology, Bernhard-Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - Roy A Hall
- Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia
| | - John Hammond
- Floral and Nursery Plants Research Unit, United States Department of Agriculture, Agricultural Research Service, USNA, Beltsville, MD, USA
| | - Tong Han
- College of Life Science and Engineering, Shenyang University, Shenyang, Liaoning, People's Republic of China
| | - Jussi Hepojoki
- Department of Virology, University of Helsinki, Medicum, Helsinki, Finland
- Institute of Veterinary Pathology, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland
| | - Roger Hewson
- London School of Hygeine and Tropical Medicine, London, UK
| | - Jiang Hong
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, People's Republic of China
| | - Ni Hong
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Seiji Hongo
- Department of Infectious Diseases, Yamagata University Faculty of Medicine, Yamagata, Japan
| | - Masayuki Horie
- Hakubi Center for Advanced Research, Kyoto University, Kyoto, Japan
- Division of Veterinary Sciences, Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Japan
| | - John S Hu
- University of Hawaii, Honolulu, HI, USA
| | - Tao Hu
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, People's Republic of China
| | - Holly R Hughes
- Centers for Disease Control and Prevention, Fort Collins, CO, USA
| | - Florian Hüttner
- Division Phytomedicine, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Timothy H Hyndman
- School of Veterinary Medicine, Murdoch University, Murdoch, WA, Australia
| | - M Ilyas
- Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA
| | | | - Dàohóng Jiāng
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, People's Republic of China
| | - Gilda B Jonson
- Rice Breeding Innovations Platform, International Rice Research Institute, Los Baños, Laguna, Philippines
| | - Sandra Junglen
- Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Free University Berlin, Humboldt-University Berlin, and Berlin Institute of Health, Berlin, Germany
- German Centre for Infection Research, Berlin, Germany
| | - Fujio Kadono
- Department of Clinical Plant Science, Faculty of Bioscience and Applied Chemistry, Hosei University, Koganei, Tokyo, Japan
| | - Karia H Kaukinen
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | | | - Boris Klempa
- Institute of Virology, Biomedical Research Center, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Jonas Klingström
- Center for Infectious Medicine, Department of Medicine Huddinge, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden
| | - Gary Kobinger
- Department of Microbiology, Immunology and Infectious Diseases, Université Laval, Quebec City, Canada
| | - Igor Koloniuk
- Plant Virology Department, Institute of Plant Molecular Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic
| | - Hideki Kondō
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
| | - Eugene V Koonin
- National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - Mart Krupovic
- Archaeal Virology Unit, Institut Pasteur, Paris, France
| | - Kenji Kubota
- Central Region Agricultural Research Center, NARO, Tsukuba, Ibaraki, Japan
| | - Gael Kurath
- US Geological Survey Western Fisheries Research Center, Seattle, WA, USA
| | - Lies Laenen
- KU Leuven, Rega Institute, Zoonotic Infectious Diseases unit, Leuven, Belgium
- Department of Laboratory Medicine, University Hospitals Leuven, Leuven, Belgium
| | - Amy J Lambert
- Centers for Disease Control and Prevention, Fort Collins, CO, USA
| | | | - Benhur Lee
- Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | | | - Eric M Leroy
- MIVEGEC (IRD-CNRS-Montpellier university) Unit, French National Research Institute for Sustainable Development (IRD), Montpellier, France
| | - Shaorong Li
- Fisheries and Oceans Canada, Pacific Biological Station, 3190 Hammond Bay Road, Nanaimo, BC, V9T 6N7, Canada
| | - Longhui Li
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Jiànróng Lǐ
- Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University, Columbus, OH, USA
| | - Huazhen Liu
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Igor S Lukashevich
- Department of Pharmacology and Toxicology, School of Medicine, and the Center for Predictive Medicine for Biodefense and Emerging Infectious Diseases, University of Louisville, Louisville, KY, USA
| | - Piet Maes
- KU Leuven, Rega Institute, Zoonotic Infectious Diseases unit, Leuven, Belgium
| | | | - Marco Marklewitz
- Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Free University Berlin, Humboldt-University Berlin, and Berlin Institute of Health, Berlin, Germany
- German Center for Infection Research (DZIF), Berlin, Germany
| | - Sergio H Marshall
- Pontificia Universidad Católica de Valparaíso, Campus Curauma, Valparaíso, Chile
| | - Shin-Yi L Marzano
- United States Department of Agriculture, Agricultural Research Service , Washington, USA
| | - Sebastien Massart
- Gembloux Agro-Bio Tech, TERRA, Plant Pathology Laboratory, Liège University, Liege, Belgium
| | - John W McCauley
- Worldwide Influenza Centre, Francis Crick Institute, London, UK
| | - Michael Melzer
- Plant and Environmental Protection Sciences, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | | | - Kristina M Miller
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Tobi J Ming
- Molecular Genetics, Pacific Biological Station, Department of Fisheries and Oceans, Nanaimo, Canada
| | | | - Gideon J Mordecai
- Department of Medicine, Univeristy of British Columbia, Vancouver, Canada
| | | | - Elke Mühlberger
- Department of Microbiology and National Emerging Infectious Diseases Laboratories, Boston University School of Medicine, Boston, MA, USA
| | - Rayapati Naidu
- Department of Plant Pathology, Irrigated Agricultural Research and Extension Center, Washington State University, Prosser, WA, USA
| | - Tomohide Natsuaki
- School of Agriculture, Utsunomiya University, Utsunomiya, Tochigi, Japan
| | - José A Navarro
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, Valencia, Spain
| | - Sergey V Netesov
- Novosibirsk State University, Novosibirsk, Novosibirsk Oblast, Russia
| | - Gabriele Neumann
- Influenza Research Institute, Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA
| | - Norbert Nowotny
- Institute of Virology, University of Veterinary Medicine Vienna, Vienna, Austria
- College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates
| | | | | | - Gustavo Palacios
- United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD, USA
| | - Vicente Pallás
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Cientificas-Universidad Politécnica de Valencia, Valencia, Spain
| | - Bernadett Pályi
- National Biosafety Laboratory, National Public Health Center, Budapest, Hungary
| | - Anna Papa
- National Reference Centre for Arboviruses and Haemorrhagic Fever Viruses, Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Sofia Paraskevopoulou
- Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany
| | - Adam C Park
- University of Hawaii, Honolulu, HI, USA
- Hawaii Department of Agriculture, Honolulu, HI, USA
| | - Colin R Parrish
- Baker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA
| | - David A Patterson
- Fisheries and Oceans Canada, Resource and Environmental Management, Simon Fraser University, Burnaby, BC, Canada
| | - Alex Pauvolid-Corrêa
- Department of Veterinary Integrated Biosciences and Department of Entomology, Texas A&M University, College Station, USA
- Laboratory of Respiratory Viruses and Measles, Fiocruz, Rio de Janeiro, Brazil
| | - Janusz T Pawęska
- Center for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham-Johannesburg, Gauteng, South Africa
| | - Susan Payne
- Department of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA
| | - Carlotta Peracchio
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Strada delle Cacce 73, 10135, Turin, Italy
| | - Daniel R Pérez
- Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | - Thomas S Postler
- Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, 10032, USA
| | - Liying Qi
- Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, People's Republic of China
| | | | - Renato O Resende
- Departamento de Biologia Celular, Universidade de Brasília, Brasília, Brazil
| | - Carina A Reyes
- Instituto de Biotecnología y Biología Molecular, CCT-La Plata, CONICET-UNLP, La Plata, Buenos Aires, Argentina
| | - Bertus K Rima
- Centre for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, The Queen's University of Belfast, Belfast, Northern Ireland, UK
| | - Gabriel Robles Luna
- Instituto de Biotecnología y Biología Molecular, CCT-La Plata, CONICET-UNLP, La Plata, Buenos Aires, Argentina
| | - Víctor Romanowski
- Instituto de Biotecnología y Biología Molecular, Centro Cientifico Technológico-La Plata, Consejo Nacional de Investigaciones Científico Tecnológico-Universidad Nacional de La Plata, La Plata, Argentina
| | - Paul Rota
- National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Dennis Rubbenstroth
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Luisa Rubino
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Bari, Italy
| | - Jonathan A Runstadler
- Department of Infectious Disease and Global Health, Tufts University Cummings School of Veterinary Medicine, 200 Westboro Road, North Grafton, MA, 01536, USA
| | - Sead Sabanadzovic
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS, USA
| | | | - Maria S Salvato
- Institute of Human Virology, University of Maryland School of Medicine, Baltimore, MA, USA
| | - Rosemary Sang
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
| | - Takahide Sasaya
- Institute for Plant Protection, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Angela D Schulze
- Molecular Genetics Lab, Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Martin Schwemmle
- Faculty of Medicine, University Medical Center-University Freiburg, Freiburg, Germany
| | - Mang Shi
- Sun Yat-sen University, Shenzhen, People's Republic of China
| | - Xiǎohóng Shí
- MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, UK
| | - Zhènglì Shí
- CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, Hubei, People's Republic of China
| | | | - Yukio Shirako
- Asian Center for Bioresources and Environmental Sciences, University of Tokyo, Tokyo, Japan
| | - Stuart G Siddell
- School of Cellular and Molecular Medicine, University of Bristol, Bristol, UK
| | - Peter Simmonds
- Nuffield Department of Medicine, University of Oxford, Oxford, UK
| | - Manuela Sironi
- Bioinformatics Unit, Scientific Institute IRCCS "E. Medea", Bosisio Parini, Italy
| | - Guy Smagghe
- Faculty of Bioscience Engineering, Department of Plants and Crops, Ghent University, Ghent, Belgium
| | - Sophie Smither
- CBR Division, DSTL, Porton Down, Salisbury, Wiltshire, UK
| | - Jin-Won Song
- Department of Microbiology, College of Medicine, Korea University, Seoul, Republic of Korea
| | - Kirsten Spann
- School of Biomedical Sciences, Faculty of Health, Queensland University of Technology, Brisbane, QLD, Australia
| | - Jessica R Spengler
- Viral Special Pathogens Branch, Division of High-Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, USA
| | - Mark D Stenglein
- Department of Microbiology, Immunology, and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA
| | - David M Stone
- Centre for Environment, Fisheries and Aquaculture Science, Weymouth, Dorset, UK
| | | | - Curtis A Suttle
- Departments of Earth, Ocean and Atmospheric Sciences, Microbiology and Immunology, and Botany, and the Institute for Oceans and Fisheries, University of British Columbia, Vancouver, Canada
| | - Amy Tabata
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Ayato Takada
- Division of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Shigeharu Takeuchi
- Japan Plant Protection Association Kochi Experiment Station, Konan, Kochi, Japan
| | - David P Tchouassi
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
| | - Amy Teffer
- Department of Forest Sciences, University of British Columbia, Vancouver, Canada
| | - Robert B Tesh
- Department of Pathology, The University of Texas Medical Branch, Galveston, TX, USA
| | | | - Yasuhiro Tomitaka
- Kyushu Okinawa Agricultural Research Center, NARO, Koshi, Kumamoto, Japan
| | - Keizō Tomonaga
- Institute for Frontier Life and Medical Sciences (inFront), , Kyoto University, Kyoto, Japan
| | - Noël Tordo
- Unité des Stratégies Antivirales, WHO Collaborative Centre for Viral Haemorrhagic Fevers and Arboviruses, OIE Reference Laboratory for RVFV & CCHFV, Institut Pasteur, Paris, France
| | - Baldwyn Torto
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
| | - Jonathan S Towner
- Viral Special Pathogens Branch, Division of High-Consequence Pathogens Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
- Institut Pasteur de Guinée, Conakry, Guinea
| | - Shinya Tsuda
- Department of Clinical Plant Science, Faculty of Bioscience and Applied Chemistry, Hosei University, Koganei, Tokyo, Japan
| | - Changchun Tu
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, Jilin Province, People's Republic of China
| | - Massimo Turina
- National Institute of Optics, National Research Council of Italy (INO-CNR), Via Branze 45, 25123Brescia, Italy
| | - Ioannis E Tzanetakis
- Department of Entomology and Plant Pathology, Division of Agriculture, University of Arkansas System,, Fayetteville, AR, 72701, USA
| | | | - Tomio Usugi
- Central Region Agricultural Research Center, NARO, Tsukuba, Ibaraki, Japan
| | - Anna Maria Vaira
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Strada delle Cacce 73, 10135, Turin, Italy
| | - Marta Vallino
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Strada delle Cacce 73, 10135, Turin, Italy
| | - Bernadette van den Hoogen
- Department of Viroscience, Erasmus MC, University Medical Centre Rotterdam, Rotterdam, The Netherlands
| | - Arvind Varsani
- The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine School of Life Sciences, Arizona State University, Tempe, AZ, USA
- Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Observatory, Cape Town, South Africa
| | - Nikos Vasilakis
- Department of Pathology, The University of Texas Medical Branch, Galveston, TX, USA
| | - Martin Verbeek
- Wageningen University and Research, Biointeractions and Plant Health, Wageningen, The Netherlands
| | - Susanne von Bargen
- Division Phytomedicine, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Jiro Wada
- Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, MD, USA
| | - Victoria Wahl
- National Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD, USA
| | - Peter J Walker
- School of Chemistry and Molecular Biosciences, University of Queensland, St. Lucia, QLD, Australia
| | - Lin-Fa Wang
- Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore
| | - Guoping Wang
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Yanxiang Wang
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Yaqin Wang
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, People's Republic of China
| | - Muhammad Waqas
- Key Laboratory of Crop Disease Monitoring and Safety Control in Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, People's Republic of China
| | - Tàiyún Wèi
- Fujian Province Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, People's Republic of China
| | - Shaohua Wen
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Anna E Whitfield
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA
| | - John V Williams
- School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA
| | - Yuri I Wolf
- National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
| | - Jiangxiang Wu
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, People's Republic of China
| | - Lei Xu
- Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi, People's Republic of China
| | | | - Caixia Yang
- College of Life Science and Engineering, Shenyang University, Shenyang, Liaoning, People's Republic of China
| | - Zuokun Yang
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - F Murilo Zerbini
- Departamento de Fitopatologia, Instituto de Biotecnologia Aplicada à Agropecuária, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Lifeng Zhai
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan, 430070, Hubei , People's Republic of China
| | - Yong-Zhen Zhang
- National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, People's Republic of China
- Shanghai Public Health Clinical Center & Institutes of Biomedical Sciences, Fudan University, Shanghai, People's Republic of China
| | - Song Zhang
- National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Beibei, Chongqing, People's Republic of China
| | - Jinguo Zhang
- National Sand Pear Germplasm Repository in Wuchang, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan, Hubei, People's Republic of China
| | - Zhe Zhang
- Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Xueping Zhou
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
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14
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Morina F, Mijovilovich A, Koloniuk I, Pěnčík A, Grúz J, Novák O, Küpper H. Interactions between zinc and Phomopsis longicolla infection in roots of Glycine max. J Exp Bot 2021; 72:3320-3336. [PMID: 33544825 DOI: 10.1093/jxb/erab052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 01/31/2021] [Indexed: 06/12/2023]
Abstract
Phomopsis. longicolla is a hemibiotrophic fungus causing significant soybean yield loss worldwide. To reveal the role of zinc in plant-pathogen interactions, soybean seedlings were grown hydroponically with a range of Zn concentrations, 0.06 µM (deficient, Zn0), 0.4 µM (optimal growth), 1.5 µM, 4 µM, 12 µM, and toxic 38 μM, and were subsequently inoculated with P. longicolla via the roots. In vivo analysis of metal distribution in tissues by micro-X-ray fluorescence showed local Zn mobilization in the root maturation zone in all treatments. Decreased root and pod biomass, and photosynthetic performance in infected plants treated with 0.4 µM Zn were accompanied with accumulation of Zn, jasmonoyl-L-isoleucine (JA-Ile), jasmonic acid, and cell wall-bound syringic acid (cwSyA) in roots. Zn concentration in roots of infected plants treated with 1.5 µM Zn was seven-fold higher than in the 0.4 µM Zn treatment, which together with accumulation of JA-Ile, cwSyA, cell wall-bound vanilic acid and leaf jasmonates contributed to maintaining photosynthesis and pod biomass. Host-pathogen nutrient competition and phenolics accumulation limited the infection in Zn-deficient plants. The low infection rate in Zn 4 µM-treated roots correlated with salicylic and 4-hydroxybenzoic acid, and cell wall-bound p-coumaric acid accumulation. Zn toxicity promoted pathogen invasion and depleted cell wall-bound phenolics. The results show that manipulation of Zn availability improves soybean resistance to P. longicolla by stimulating phenolics biosynthesis and stress-inducible phytohormones.
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Affiliation(s)
- Filis Morina
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics and Biochemistry, Branišovská, České Budějovice, Czech Republic
| | - Ana Mijovilovich
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics and Biochemistry, Branišovská, České Budějovice, Czech Republic
| | - Igor Koloniuk
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Department of Plant Virology, Branišovská, České Budějovice, Czech Republic
| | - Aleš Pěnčík
- Czech Academy of Sciences, Institute of Experimental Botany and Palacký University, Faculty of Science, Laboratory of Growth Regulators, Šlechtitelů, Olomouc, Czech Republic
| | - Jiří Grúz
- Czech Academy of Sciences, Institute of Experimental Botany and Palacký University, Faculty of Science, Laboratory of Growth Regulators, Šlechtitelů, Olomouc, Czech Republic
| | - Ondrej Novák
- Czech Academy of Sciences, Institute of Experimental Botany and Palacký University, Faculty of Science, Laboratory of Growth Regulators, Šlechtitelů, Olomouc, Czech Republic
| | - Hendrik Küpper
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics and Biochemistry, Branišovská, České Budějovice, Czech Republic
- University of South Bohemia, Department of Experimental Plant Biology, Branišovská, České Budějovice, Czech Republic
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Abstract
This article provides an up-to-date review of disease-causing viruses and phytoplasmas of currants including symptoms, transmission, detection, economic impact, and control measures. Currants are widely cultivated in more than 30 countries in the temperate zones of Europe, Asia, South America, Australia, and New Zealand. Ribes spp. can be infected by more than 20 virus species and four Candidatus Phytoplasma species, with more to be described in the future. High-throughput sequencing opened a new era of deciphering virus variants and mixed infections, leading to the characterization of several new species. The use of clean propagation material is the basis for control of Ribes graft-transmissible diseases, but this has become a challenging task given the ever-growing number of newly discovered pathogens.
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Affiliation(s)
- Josef Špak
- Biology Centre, Czech Academy of Sciences, 37005 České Budějovice, Czech Republic
| | - Igor Koloniuk
- Biology Centre, Czech Academy of Sciences, 37005 České Budějovice, Czech Republic
| | - Ioannis E Tzanetakis
- Department of Entomology and Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR 72701, U.S.A
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Petrzik K, Lukavský J, Koloniuk I. Novel Virus on Filamentous Arthronema africanum Cyanobacterium. Microb Ecol 2021; 81:454-459. [PMID: 32901386 DOI: 10.1007/s00248-020-01599-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 09/03/2020] [Indexed: 06/11/2023]
Abstract
Widely distributed in water environments and in soil, cyanobacteria are hosts of lysogenic or lytic bacterioviruses. A novel, probably lysogenic virus (phage) for which the name Arthronema africanum virus TR020 (Aa-TR020) is proposed, has been isolated from filamentous freshwater cyanobacterium Arthronema africanum. The virus formed turbid plaques on plate culture of A. africanum strain 1980/01 but not on other Arthronema strain and other bacterial species. The genome of Aa-TR020 is linear molecule of dsDNA, 44,805 bp in length with 216 bp long terminal repeats and with G + C content of 46%. Fifty-five genes organized on plus and minus strands were predicted there. The genome size, gene arrangement, and selected protein sequences showed relatedness to Phormidium virus Pf-WMP3 and other viruses known to infect cyanobacteria and classified in the family Podoviridae.
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Affiliation(s)
- Karel Petrzik
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, České Budějovice, Czech Republic.
| | - Jaromír Lukavský
- Centre for Phycology, Institute of Botany, Czech Academy of Sciences, Dukelská 135, Třeboň, Czech Republic
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, České Budějovice, Czech Republic
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17
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Koloniuk I, Přibylová J, Špak J. Complete genome sequence of a mite-associated virus obtained by high-throughput sequencing analysis of an apple leaf sample. Arch Virol 2020; 165:1501-1504. [PMID: 32266551 DOI: 10.1007/s00705-020-04620-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 03/19/2020] [Indexed: 11/25/2022]
Abstract
We provide the complete sequence of a virus tentatively named "Tetranychus urticae-associated picorna-like virus 1PK13" (TuaPV1-PK13) obtained from the high-throughput sequencing of a symptomless apple leaf sample. Although the virus sequence was originally derived from apple leaves, the data suggest that the virus is associated with the two-spotted mite Tetranychus urticae.
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, V.V.I., Branišovská 31, 370 05, České Budějovice, Czech Republic.
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, V.V.I., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Josef Špak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, V.V.I., Branišovská 31, 370 05, České Budějovice, Czech Republic
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18
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Lenz O, Přibylová J, Fránová J, Koloniuk I. Fragaria vesca-associated virus 1: a new virus related to negeviruses. Arch Virol 2020; 165:1249-1252. [PMID: 32232672 DOI: 10.1007/s00705-020-04603-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 03/02/2020] [Indexed: 01/05/2023]
Abstract
In this study, the complete genomic sequence of a novel virus was determined by next-generation sequencing of a sample from a symptomatic strawberry plant with severe yellow spots and mosaic on its leaves. Its genomic organization and sequence showed that this virus is related to members of the proposed insect-specific genus "Negevirus". The sample also contained sequences from the geranium aphid Acyrthosiphon malvae. Although the virus was detected repeatedly in the same plant during the three following years, no other positive samples were obtained from the surroundings or more-distant locations. Reverse transcription qPCR analysis revealed the presence of both genomic positive and complementary negative strands of the viral genome in the sample, with a 3- to 30-fold excess of the positive strand, indicating active viral replication. As the virus was not detected in any insect species collected at this location, the virus was provisionally named "Fragaria vesca-associated virus 1" (FVaV-1).
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Affiliation(s)
- Ondřej Lenz
- Biology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, 37005, České Budějovice, Czech Republic.
| | - Jaroslava Přibylová
- Biology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, 37005, České Budějovice, Czech Republic
| | - Jana Fránová
- Biology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, 37005, České Budějovice, Czech Republic
| | - Igor Koloniuk
- Biology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, 37005, České Budějovice, Czech Republic
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Tzanetakis IE, Martin R, Koloniuk I. Special Issue "Plant Virus Epidemiology and Control". Viruses 2020; 12:v12030309. [PMID: 32178441 PMCID: PMC7150805 DOI: 10.3390/v12030309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 03/12/2020] [Indexed: 11/30/2022] Open
Affiliation(s)
- Ioannis E. Tzanetakis
- Department of Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR 72701, USA
- Correspondence: (I.E.T.); (R.M.); (I.K.)
| | - Robert Martin
- USDA-ARS, Horticultural Crops Research Unit, Corvallis, OR 97330, USA
- Correspondence: (I.E.T.); (R.M.); (I.K.)
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., 3301 České Budějovice, Czech Republic
- Correspondence: (I.E.T.); (R.M.); (I.K.)
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20
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Petrzik K, Koloniuk I, Sehadová H, Sarkisova T. Chrysoviruses Inhabited Symbiotic Fungi of Lichens. Viruses 2019; 11:v11121120. [PMID: 31817044 PMCID: PMC6949994 DOI: 10.3390/v11121120] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 11/26/2019] [Accepted: 11/30/2019] [Indexed: 12/28/2022] Open
Abstract
A lichen body is formed most often from green alga cells trapped in a net of ascomycetous fungi and accompanied by endolichenic or parasitic fungi, other algae, and symbiotic or free-living bacteria. The lichen’s microcosmos is inhabited by mites, insects, and other animals for which the lichen is a source of food or a place to live. Novel, four-segmented dsRNA viruses were detected in saxicolous Chrysothrixchlorina and Lepraria incana lichens. Comparison of encoded genome proteins revealed classification of the viruses to the genus Alphachrysovirus and a relationship to chrysoviruses from filamentous ascomycetous fungi. We propose the names Chrysothrix chrysovirus 1 (CcCV1) and Lepraria chrysovirus 1 (LiCV1) as acronyms for these viruses. Surprisingly, observation of Chrysothrix chlorina hybridization with fluorescent-labelled virus probe by confocal microscope revealed that the CcCV1 virus is not present in the lichen body-forming fungus but in accompanying endolichenic Penicilliumcitreosulfuratum fungus. These are the first descriptions of mycoviruses from a lichen environment.
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Affiliation(s)
- Karel Petrzik
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic; (I.K.); (T.S.)
- Correspondence: ; Tel.: +420-387-775-549
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic; (I.K.); (T.S.)
| | - Hana Sehadová
- Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic;
- Faculty of Science, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic
| | - Tatiana Sarkisova
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic; (I.K.); (T.S.)
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21
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Koloniuk I, Přibylová J, Fránová J, Špak J. Genomic characterization of Malus domestica virus A (MdoVA), a novel velarivirus infecting apple. Arch Virol 2019; 165:479-482. [PMID: 31776676 DOI: 10.1007/s00705-019-04478-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 10/25/2019] [Indexed: 11/28/2022]
Abstract
Screening of apple samples using a high-throughput sequencing (HTS) approach led to the discovery of a novel virus, tentatively named "Malus domestica virus A" (MdoVA). Its genomic organisation and phylogenetic relationship showed relatedness to viruses of the genus Velarivirus in the family Closteroviridae. It is not clear whether MdoVA has any impact on its host, as the analysed apple tree contained other viruses and a viroid.
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05, Ceske Budejovice, Czech Republic.
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05, Ceske Budejovice, Czech Republic
| | - Jana Fránová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05, Ceske Budejovice, Czech Republic
| | - Josef Špak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 370 05, Ceske Budejovice, Czech Republic
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22
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Massart S, Chiumenti M, De Jonghe K, Glover R, Haegeman A, Koloniuk I, Komínek P, Kreuze J, Kutnjak D, Lotos L, Maclot F, Maliogka V, Maree HJ, Olivier T, Olmos A, Pooggin MM, Reynard JS, Ruiz-García AB, Safarova D, Schneeberger PHH, Sela N, Turco S, Vainio EJ, Varallyay E, Verdin E, Westenberg M, Brostaux Y, Candresse T. Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies. Phytopathology 2019; 109:488-497. [PMID: 30070618 DOI: 10.1094/phyto-02-18-0067-r] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Recent developments in high-throughput sequencing (HTS), also called next-generation sequencing (NGS), technologies and bioinformatics have drastically changed research on viral pathogens and spurred growing interest in the field of virus diagnostics. However, the reliability of HTS-based virus detection protocols must be evaluated before adopting them for diagnostics. Many different bioinformatics algorithms aimed at detecting viruses in HTS data have been reported but little attention has been paid thus far to their sensitivity and reliability for diagnostic purposes. Therefore, we compared the ability of 21 plant virology laboratories, each employing a different bioinformatics pipeline, to detect 12 plant viruses through a double-blind large-scale performance test using 10 datasets of 21- to 24-nucleotide small RNA (sRNA) sequences from three different infected plants. The sensitivity of virus detection ranged between 35 and 100% among participants, with a marked negative effect when sequence depth decreased. The false-positive detection rate was very low and mainly related to the identification of host genome-integrated viral sequences or misinterpretation of the results. Reproducibility was high (91.6%). This work revealed the key influence of bioinformatics strategies for the sensitive detection of viruses in HTS sRNA datasets and, more specifically (i) the difficulty in detecting viral agents when they are novel or their sRNA abundance is low, (ii) the influence of key parameters at both assembly and annotation steps, (iii) the importance of completeness of reference sequence databases, and (iv) the significant level of scientific expertise needed when interpreting pipeline results. Overall, this work underlines key parameters and proposes recommendations for reliable sRNA-based detection of known and unknown viruses.
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Affiliation(s)
- Sebastien Massart
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Michela Chiumenti
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Kris De Jonghe
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Rachel Glover
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Annelies Haegeman
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Igor Koloniuk
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Petr Komínek
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Jan Kreuze
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Denis Kutnjak
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Leonidas Lotos
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - François Maclot
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Varvara Maliogka
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Hans J Maree
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Thibaut Olivier
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Antonio Olmos
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Mikhail M Pooggin
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Jean-Sébastien Reynard
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Ana B Ruiz-García
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Dana Safarova
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Pierre H H Schneeberger
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Noa Sela
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Silvia Turco
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Eeva J Vainio
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Eva Varallyay
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Eric Verdin
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Marcel Westenberg
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Yves Brostaux
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
| | - Thierry Candresse
- First and eleventh authors: Integrated and Urban Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; second author: Institute for Plant Sustainable Protection-National Research Center, Via Amendola, 165/A, 70126 Bari, Italy; third and fifth authors: Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burg. Van Gansberghelaan 96, 9820 Merelbeke, Belgium; fourth author: Fera Science Ltd., National Agri-Food Innovation Campus, Sand Hutton, York, YO41 1LZ, United Kingdom; sixth author: Biology Centre CAS, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic; seventh author: Crop Research Institute, Drnovska 507, 161 06 Prague, Czech Republic; eighth author: Crop Protection Division, International Potato Center (CIP), Aveninda La Molina 1895, La Molina, Lima, Peru; ninth author: Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia; tenth and twelfth authors: Laboratory of Plant Pathology, Faculty of Agriculture, Forestry and Natural Environment, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; thirteenth author: Agricultural Research Council, Infruitec-Nietvoorbij: Institute for Deciduous Fruit, Vines and Wine, Nietvoorbij Farm R44, 7600 Stellenbosch, South Africa; fourteenth author: Life Sciences Department, Walloon Agricultural Research Center (CRA-W), Rue de Liroux 4, Gembloux, Belgium; fifteenth and eighteenth authors: Center of Plant Protection and Biotechnology, Instituto Valenciano de Investigaciones Agrarias (IVIA), Ctra Moncada-Náquera km 4.5, 46113 Moncada, Valencia, Spain; sixteenth author: Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche-Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI), 34398 Montpellier, France; sixteenth and twenty-second authors: University of Basel, Department of Environmental Sciences, Botany, 4056 Basel, Switzerland; seventeenth author: Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland; nineteenth author: Department of Cell Biology and Genetics, Faculty of Science, Palacky University in Olomouc, Slechtitelu 27, 783 71 Olomouc, Czech Republic; twentieth author: Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4051 Basel, Switzerland; twenty-first author: Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, 50250 Bet Dagan, Israel; twenty-third author: Natural Resources Institute Finland, Latokartanonkaari 9, 00790 Helsinki, Finland; twenty-fourth author: Diagnostic Group, Department of Genomics, Agricultural Biotechnology and Research Institute, National Agricultural Research and Innovation Center, Szent-Gyorgyi A street 4, H-2100, Gödöllő, Hungary; twenty-fifth author: Pathologie Végétale, INRA, F-84140 Montfavet, France; twenty-sixth author: Dutch National Plant Protection Organization (NPPO-NL), P.O. Box. 9102, 6700 HC, Wageningen, The Netherlands; twenty-seventh author: Applied Statistics, Computer Science and Mathematics (SIMa), Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium; and twenty-eighth author: UMR 1332 BFP, INRA, Université de Bordeaux, CS20032, 33882 Villenave d'Ornon Cedex, France
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Fránová J, Koloniuk I, Lenz O, Sakalieva D. Molecular diversity of "Candidatus Phytoplasma mali" strains associated with apple proliferation disease in Bulgarian germplasm collection. Folia Microbiol (Praha) 2018; 64:373-382. [PMID: 30377990 DOI: 10.1007/s12223-018-0660-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 10/22/2018] [Indexed: 11/30/2022]
Abstract
A quarantine organism, "Candidatus Phytoplasma mali," is the causal agent of apple proliferation, one of the most important apple diseases in Europe. The genetic diversity of this pathogen in Central and Southern Europe has already been reported; however, almost no data exists from Eastern Europe. In this study, "Ca. P. mali" strains, which were identified in 14 apple trees from the Bulgarian germplasm collection, were characterized by restriction fragment length polymorphism (RFLP) and sequence analysis of four genomic loci. In total, nine distinct genetic lineages were recognized based on the combination of the following detected RFLP profiles: two profiles for the 16S-23S rDNA region (16SrX-A2, -A3), four profiles for the secY gene (one previously known: secY(X)-A, and three new: secY-C, secY-D, secY-E), three profiles for the rpl22-rps3 genes (rpX-A, rpX-B, rpX-F), and one profile for the nitroreductase- and rhodanese-like gene (AT-1). Phylogenetic analysis of the Bulgarian and other European "Ca. P. mali" strains based on 16S-23S rRNA gene sequences confirmed RFLP grouping, regardless of the phytoplasma origin. In a phylogenetic tree based on the secY data, only German strains formed separate clade from the other strains. The tree based on rp genes did not correspond to RFLP profiles. Unexpectedly, when using nitroreductase and rhodanese-like gene sequences, the Bulgarian strains clustered separately from the other European strains. Apart from the identification of different "Ca. P. mali" strains, the paper also recommends the unification of the rpX-subgroup nomenclature to avoid future confusions. Both aims of this paper provide valuable tools to understand the epidemiology of this quarantine pathogen.
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Affiliation(s)
- Jana Fránová
- Department of Plant Virology, Institute of Plant Molecular Biology, The Biology Centre of the Czech Academy of Sciences, 370 05, České Budějovice, Czech Republic.
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, The Biology Centre of the Czech Academy of Sciences, 370 05, České Budějovice, Czech Republic
| | - Ondřej Lenz
- Department of Plant Virology, Institute of Plant Molecular Biology, The Biology Centre of the Czech Academy of Sciences, 370 05, České Budějovice, Czech Republic
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Koloniuk I, Fránová J. Complete nucleotide sequence and genome organization of red clover associated virus 1 (RCaV1), a putative member of the genus Waikavirus (family Secoviridae, order Picornavirales). Arch Virol 2018; 163:3447-3449. [DOI: 10.1007/s00705-018-4005-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 08/08/2018] [Indexed: 11/24/2022]
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Lenz O, Sarkisová T, Koloniuk I, Fránová J, Přibylová J, Špak J. Red clover-associated luteovirus – a newly classifiable member of the genus Luteovirus with an enamo-like P5 protein. Arch Virol 2018; 163:3439-3442. [DOI: 10.1007/s00705-018-3997-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 06/09/2018] [Indexed: 10/28/2022]
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Koloniuk I, Thekke-Veetil T, Reynard JS, Mavrič Pleško I, Přibylová J, Brodard J, Kellenberger I, Sarkisova T, Špak J, Lamovšek J, Massart S, Ho T, Postman JD, Tzanetakis IE. Molecular Characterization of Divergent Closterovirus Isolates Infecting Ribes Species. Viruses 2018; 10:E369. [PMID: 30002359 PMCID: PMC6071065 DOI: 10.3390/v10070369] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Revised: 07/06/2018] [Accepted: 07/10/2018] [Indexed: 11/17/2022] Open
Abstract
Five isolates of a new member of the family Closteroviridae, tentatively named blackcurrant leafroll-associated virus 1 (BcLRaV-1), were identified in the currant. The 17-kb-long genome codes for 10 putative proteins. The replication-associated polyprotein has several functional domains, including papain-like proteases, methyltransferase, Zemlya, helicase, and RNA-dependent RNA polymerase. Additional open reading frames code for a small protein predicted to integrate into the host cell wall, a heat-shock protein 70 homolog, a heat-shock protein 90 homolog, two coat proteins, and three proteins of unknown functions. Phylogenetic analysis showed that BcLRaV-1 is related to members of the genus Closterovirus, whereas recombination analysis provided evidence of intraspecies recombination.
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05 České Budějovice, Czech Republic.
| | - Thanuja Thekke-Veetil
- Department of Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR 72701, USA.
| | | | - Irena Mavrič Pleško
- Agricultural Institute of Slovenia, Hacquetova ulica 17, 1000 Ljubljana, Slovenia.
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05 České Budějovice, Czech Republic.
| | - Justine Brodard
- Virology-Phytoplasmology Laboratory, Agroscope, 1260 Nyon, Switzerland.
| | | | - Tatiana Sarkisova
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05 České Budějovice, Czech Republic.
| | - Josef Špak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05 České Budějovice, Czech Republic.
| | - Janja Lamovšek
- Agricultural Institute of Slovenia, Hacquetova ulica 17, 1000 Ljubljana, Slovenia.
| | - Sebastien Massart
- Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés, 2, 5030 Gembloux, Belgium.
| | - Thien Ho
- Department of Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR 72701, USA.
| | - Joseph D Postman
- National Clonal Germplasm Repository, United States Department of Agriculture, Corvallis, OR 97333, USA.
| | - Ioannis E Tzanetakis
- Department of Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR 72701, USA.
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Koloniuk I, Fránová J, Sarkisova T, Přibylová J. Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant. Arch Virol 2018; 163:2539-2542. [DOI: 10.1007/s00705-018-3860-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Accepted: 04/20/2018] [Indexed: 01/22/2023]
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Koloniuk I, Fránová J, Sarkisova T, Přibylová J, Lenz O, Petrzik K, Špak J. Identification and molecular characterization of a novel varicosa-like virus from red clover. Arch Virol 2018; 163:2213-2218. [PMID: 29619600 DOI: 10.1007/s00705-018-3838-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 02/28/2018] [Indexed: 01/17/2023]
Abstract
During aetiological study of diseased red clover (Trifolium pratense L.) using high throughput sequencing, a novel virus with a 10 kb genome divided into two segments was discovered. The virus, tentatively named red clover associated varicosavirus (RCaVV), is phylogenetically related to classifiable members of the genus Varicosavirus (family Rhabdoviridae, order Mononegavirales). Analysis of mRNA levels from the individual RCaVV genes suggested possible differences in transcription regulation between rhabdoviruses with divided and undivided genomes.
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic.
| | - Jana Fránová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Tatiana Sarkisova
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Ondřej Lenz
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Karel Petrzik
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Josef Špak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
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Suzuki N, Ghabrial SA, Kim KH, Pearson M, Marzano SYL, Yaegashi H, Xie J, Guo L, Kondo H, Koloniuk I, Hillman BI, Ictv Report Consortium. ICTV Virus Taxonomy Profile: Hypoviridae. J Gen Virol 2018; 99:615-616. [PMID: 29589826 DOI: 10.1099/jgv.0.001055] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The Hypoviridae, comprising one genus, Hypovirus, is a family of capsidless viruses with positive-sense, ssRNA genomes of 9.1-12.7 kb that possess either a single large ORF or two ORFs. The ORFs appear to be translated from genomic RNA by non-canonical mechanisms, i.e. internal ribosome entry site-mediated and stop/restart translation. Hypoviruses have been detected in ascomycetous or basidiomycetous filamentous fungi, and are considered to be replicated in host Golgi-derived, lipid vesicles that contain their dsRNA as a replicative form. Some hypoviruses induce hypovirulence to host fungi, while others do not. This is a summary of the current ICTV report on the taxonomy of the Hypoviridae, which is available at www.ictv.global/report/hypoviridae.
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Affiliation(s)
- Nobuhiro Suzuki
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama 710-0046, Japan
| | - Said A Ghabrial
- Plant Pathology Department, University of Kentucky, Lexington, KY 40504, USA
| | - Kook-Hyung Kim
- Department of Agricultural Biotechnology and College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Republic of Korea
| | - Michael Pearson
- School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, New Zealand
| | - Shin-Yi L Marzano
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD 57007, USA.,Department of Agronomy, Horticulture, and Plant Science, South Dakota State University, Brookings, SD 57007, USA
| | - Hajime Yaegashi
- Division of Apple Research, Institute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), Morioka, Japan
| | - Jiatao Xie
- Plant Pathology Department, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, PR China
| | - Lihua Guo
- State Key Laboratory for Biology of Plant Disease and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Hideki Kondo
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama 710-0046, Japan
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05 České Budějovice, Czech Republic
| | - Bradley I Hillman
- Department of Plant Biology and Pathology, Rutgers University, New Brunswick, NJ 08901, USA
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Koloniuk I, Přibylová J, Fránová J. Molecular characterization and complete genome of a novel nepovirus from red clover. Arch Virol 2018; 163:1387-1389. [PMID: 29397455 DOI: 10.1007/s00705-018-3742-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 01/03/2018] [Indexed: 11/30/2022]
Abstract
During high throughput sequencing (HTS) of leaves from a symptomatic red clover plant, a new RNA virus, tentatively named red clover nepovirus A (RCNVA), was discovered. The complete genomic sequence was determined and characterized. Particularly noteworthy was that RCNVA shares high sequence identities in RNA1 with a group of phylogenetically related nepoviruses while homologies in the RNA2 segments are markedly lower. Based on the genomic organization and phylogenetic attributes, RCNVA should be classified as a novel virus of the genus Nepovirus (subfamily Comovirinae, family Secoviridae, order Picornavirales).
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Biology Centre, Institute of Plant Molecular Biology, The Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic.
| | - Jaroslava Přibylová
- Department of Plant Virology, Biology Centre, Institute of Plant Molecular Biology, The Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Jana Fránová
- Department of Plant Virology, Biology Centre, Institute of Plant Molecular Biology, The Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
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Hrabáková L, Grum-Grzhimaylo AA, Koloniuk I, Debets AJM, Sarkisova T, Petrzik K. The alkalophilic fungus Sodiomyces alkalinus hosts beta- and gammapartitiviruses together with a new fusarivirus. PLoS One 2017; 12:e0187799. [PMID: 29186149 PMCID: PMC5706713 DOI: 10.1371/journal.pone.0187799] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2017] [Accepted: 10/26/2017] [Indexed: 11/18/2022] Open
Abstract
Mixed infection by three dsRNA viruses, a novel betapartitivirus, a gammapartitivirus, and a novel fusarivirus, has been identified in four isolates of the obligate alkalophilic fungus Sodiomyces alkalinus. The first, Sodiomyces alkalinus partitivirus 1 (SaPV1), is placed within the genus Betapartitivirus and is related to Ustilaginoidea virens partitivirus 2. The taxonomic position of the second virus is less clear as it shares high (85%) amino acid sequence identity but significantly low (77%) nucleotide sequence identity of the capsid protein with Colletotrichum truncatum partitivirus 1. The third, the novel Sodiomyces alkalinus fusarivirus 1 (SaFV1), is related to Fusarium poae fusarivirus 1. All the viruses show efficient vertical transmission through asexual and sexual spores. These novel coexisting viruses do not evoke apparent phenotypic alteration to their fungal host. This is the first description of a viral infection in an alkalophilic fungus.
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Affiliation(s)
- Lenka Hrabáková
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia in České Budějovice, České Budějovice, Czech Republic
| | | | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | | | - Tatiana Sarkisova
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Karel Petrzik
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
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Lenz O, Přibylová J, Fránová J, Koloniuk I, Špak J. Identification and characterization of a new member of the genus Luteovirus from cherry. Arch Virol 2016; 162:587-590. [DOI: 10.1007/s00705-016-3125-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2016] [Accepted: 10/15/2016] [Indexed: 11/29/2022]
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Abstract
Cauliflower mosaic virus (CaMV) - a plant pararetrovirus that naturally causes diseases in Brassicaceae and Solanaceae plant hosts worldwide - has been detected by PCR for the first time in herbarium samples of Usnea sp. lichens. The virus's presence in these lichens did not result in any micro- or macromorphological changes, and the herbarium records were classified as representative for the distinct species. Sequence analyses classified all the detected viruses into one lineage of CaMV isolates. We have shown here that herbarium samples could be a good source for virus study, especially where a longer time span is involved.
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Fránová J, de Sousa E, Koloniuk I, Mimoso C, Matos J, Cardoso F, Contaldo N, Paltrinieri S, Bertaccini A. Multigene characterization of a new ‘Candidatus Phytoplasma rubi’-related strain associated with blackberry witches’ broom. Int J Syst Evol Microbiol 2016; 66:1438-1446. [DOI: 10.1099/ijsem.0.000871] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Jana Fránová
- The Biology Centre of the CAS, v. v. i., Institute of Plant Molecular Biology, České Budeˇjovice, 370 05, Czech Republic
| | - Esmeraldina de Sousa
- National Institute of Agrarian and Veterinary Research (INIAV), Lisbon, Portugal
| | - Igor Koloniuk
- The Biology Centre of the CAS, v. v. i., Institute of Plant Molecular Biology, České Budeˇjovice, 370 05, Czech Republic
| | - Céu Mimoso
- National Institute of Agrarian and Veterinary Research (INIAV), Lisbon, Portugal
| | - José Matos
- National Institute of Agrarian and Veterinary Research (INIAV), Lisbon, Portugal
| | | | - Nicoletta Contaldo
- Alma Mater Studiorum, University of Bologna, DipSA, Plant Pathology, Bologna, Italy
| | - Samanta Paltrinieri
- Alma Mater Studiorum, University of Bologna, DipSA, Plant Pathology, Bologna, Italy
| | - Assunta Bertaccini
- Alma Mater Studiorum, University of Bologna, DipSA, Plant Pathology, Bologna, Italy
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Petrzik K, Sarkisova T, Starý J, Koloniuk I, Hrabáková L, Kubešová O. Molecular characterization of a new monopartite dsRNA mycovirus from mycorrhizal Thelephora terrestris (Ehrh.) and its detection in soil oribatid mites (Acari: Oribatida). Virology 2016; 489:12-9. [DOI: 10.1016/j.virol.2015.11.009] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Revised: 11/04/2015] [Accepted: 11/10/2015] [Indexed: 02/06/2023]
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Petrzik K, Přibylová J, Koloniuk I, Špak J. Molecular characterization of a novel capillovirus from red currant. Arch Virol 2016; 161:1083-6. [PMID: 26754736 DOI: 10.1007/s00705-016-2752-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Accepted: 01/02/2016] [Indexed: 12/01/2022]
Abstract
The complete nucleotide sequence of a novel virus from red currant, provisionally named currant virus A (CuVA), was determined. The genome is 7925 nucleotides long and has a 3'-poly(A) tail. The genome organization with two overlapping open reading frames is similar to that of capilloviruses, but the CuVA genome is about 600 nucleotides longer than that of the longest known capillovirus, cherry virus A. The RNA is predicted to encode a polyprotein with domains of methyltransferase, 2OG-Fe(II) oxygenase, papain-like protease, RNA helicase, RdRp, and capsid protein. Phylogenetic analysis confirms that CuVA is a new and distinct member of the genus Capillovirus.
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Affiliation(s)
- Karel Petrzik
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic.
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Josef Špak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Czech Academy of Sciences, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
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Petrzik K, Koloniuk I, Přibylová J, Špak J. Complete genome sequence of currant latent virus (genus Cheravirus, family Secoviridae). Arch Virol 2015; 161:491-3. [PMID: 26563315 DOI: 10.1007/s00705-015-2679-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2015] [Accepted: 11/05/2015] [Indexed: 11/24/2022]
Abstract
The complete nucleotide sequences of RNA1 and RNA2 of the Holandský červený strain of currant latent virus (CuLV) were determined using next-generation sequencing. The RNA1 is predicted to encode a polyprotein 2124 amino acid long with RdRp motifs. The RNA2 is predicted to encode a polyprotein 957 amino acid long with homology to the capsid protein of apple latent spherical virus and cherry rasp leaf virus. Phylogenetic analysis confirms that CuLV is a new distinct member of the genus Cheravirus.
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Affiliation(s)
- Karel Petrzik
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic.
| | - Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Jaroslava Přibylová
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Josef Špak
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of the Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, České Budějovice, Czech Republic
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Koloniuk I, Hrabáková L, Petrzik K. Molecular characterization of a novel amalgavirus from the entomopathogenic fungus Beauveria bassiana. Arch Virol 2015; 160:1585-8. [DOI: 10.1007/s00705-015-2416-0] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Accepted: 03/30/2015] [Indexed: 11/30/2022]
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Koloniuk I, Hrabakova L, Petrzik K. The complete mitochondrial genome of the phytopathogenic fungus Phomopsis longicolla. Mitochondrial DNA A DNA Mapp Seq Anal 2014; 27:3979-3980. [PMID: 25541306 DOI: 10.3109/19401736.2014.989513] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The complete mitochondrial genome of the ascomycete fungus Phomopsis longicolla was sequenced using Illumina HiSeq platform. It consists of 53,439 bp with high (65.6%) A + T content and includes 14 conserved protein subunits of the mitochondrial oxidative phosphorylation system, two ribosomal RNAs and 25 tRNA genes. To our knowledge, this is the first complete mitochondrial genome of the Diaporthales member.
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Affiliation(s)
- Igor Koloniuk
- a Department of Plant Virology , BC CAS CZ, Institute of Plant Molecular Biology , Ceske Budejovice , Czech Republic and
| | - Lenka Hrabakova
- a Department of Plant Virology , BC CAS CZ, Institute of Plant Molecular Biology , Ceske Budejovice , Czech Republic and.,b Department of Genetics , University of South Bohemia in Ceske Budejovice , Ceske Budejovice , Czech Republic
| | - Karel Petrzik
- a Department of Plant Virology , BC CAS CZ, Institute of Plant Molecular Biology , Ceske Budejovice , Czech Republic and
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Koloniuk I, El-Habbak MH, Petrzik K, Ghabrial SA. Complete genome sequence of a novel hypovirus infecting Phomopsis longicolla. Arch Virol 2014; 159:1861-3. [PMID: 24473711 DOI: 10.1007/s00705-014-1992-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2013] [Accepted: 01/14/2014] [Indexed: 10/25/2022]
Abstract
The complete nucleotide sequence and genome organization of a hypovirus from the isolate ME711 of Phomopsis longicolla was determined and compared to sequences of members of the family Hypoviridae. The genome of the hypovirus, tentatively named Phomopsis longicolla hypovirus 1 (PlHV1-ME711), was determined to be 9760 nucleotides long, excluding the 3' poly (A) tail. The genome contains a single large open reading frame (ORF) encoding a polyprotein designated as P307. Its genomic organization is typical of members of the proposed genus Betahypovirus (Yaegashi et al. in Virus Res 165:143-50, 2012).
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Affiliation(s)
- Igor Koloniuk
- Department of Plant Virology, Institute of Plant Molecular Biology, Biology Centre of Academy of Sciences of the Czech Republic, v.v.i., Branišovská 31, 370 05, Ceske Budejovice, Czech Republic,
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