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Gilman IS, Heyduk K, Maya-Lastra C, Hancock LP, Edwards EJ. Predicting photosynthetic pathway from anatomy using machine learning. New Phytol 2024; 242:1029-1042. [PMID: 38173400 DOI: 10.1111/nph.19488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 11/29/2023] [Indexed: 01/05/2024]
Abstract
Plants with Crassulacean acid metabolism (CAM) have long been associated with a specialized anatomy, including succulence and thick photosynthetic tissues. Firm, quantitative boundaries between non-CAM and CAM plants have yet to be established - if they indeed exist. Using novel computer vision software to measure anatomy, we combined new measurements with published data across flowering plants. We then used machine learning and phylogenetic comparative methods to investigate relationships between CAM and anatomy. We found significant differences in photosynthetic tissue anatomy between plants with differing CAM phenotypes. Machine learning-based classification was over 95% accurate in differentiating CAM from non-CAM anatomy, and had over 70% recall of distinct CAM phenotypes. Phylogenetic least squares regression and threshold analyses revealed that CAM evolution was significantly correlated with increased mesophyll cell size, thicker leaves, and decreased intercellular airspace. Our findings suggest that machine learning may be used to aid the discovery of new CAM species and that the evolutionary trajectory from non-CAM to strong, obligate CAM requires continual anatomical specialization.
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Affiliation(s)
- Ian S Gilman
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520, USA
- Department of Horticulture, Michigan State University, East Lansing, MI, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA
| | - Karolina Heyduk
- Department of Ecology and Evolutionary Biology, The University of Connecticut, Storrs, CT, 06269, USA
| | - Carlos Maya-Lastra
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520, USA
- Department of Biology, Angelo State University, San Angelo, TX, 76909, USA
| | - Lillian P Hancock
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520, USA
| | - Erika J Edwards
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520, USA
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2
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Zhou H, Peng J, Zhao W, Zeng Y, Xie K, Huang G. Leaf diffusional capacity largely contributes to the reduced photosynthesis in rice plants under magnesium deficiency. Plant Physiol Biochem 2024; 209:108565. [PMID: 38537380 DOI: 10.1016/j.plaphy.2024.108565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 03/07/2024] [Accepted: 03/24/2024] [Indexed: 04/06/2024]
Abstract
Numerous studies have clarified the impacts of magnesium (Mg) on leaf photosynthesis from the perspectives of protein synthesis, enzymes activation and carbohydrate partitioning. However, it still remains largely unknown how stomatal and mesophyll conductances (gs and gm, respectively) are regulated by Mg. In the present study, leaf gas exchanges, leaf hydraulic parameters, leaf structural traits and cell wall composition were examined in rice plants grown under high and low Mg treatments to elucidate the impacts of Mg on gs and gm. Our results showed that reduction of leaf photosynthesis under Mg deficiency was mainly caused by the decreased gm, followed by reduced leaf biochemical capacity and gs, and leaf outside-xylem hydraulic conductance (Kox) was the major factor restricting gs under Mg deficiency. Moreover, increased leaf hemicellulose, lignin and pectin contents and decreased cell wall effective porosity were observed in low Mg plants relative to high Mg plants. These results suggest that Kox and cell wall composition play important roles in regulating gs and gm, respectively, in rice plants under Mg shortages.
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Affiliation(s)
- Haimei Zhou
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, School of Agricultural Sciences, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China
| | - Jiang Peng
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, School of Agricultural Sciences, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China
| | - Wanling Zhao
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, School of Agricultural Sciences, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China
| | - Yongjun Zeng
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, School of Agricultural Sciences, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China
| | - Kailiu Xie
- School of Land Resources and Environment, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.
| | - Guanjun Huang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, School of Agricultural Sciences, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.
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3
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Schreier TB, Müller KH, Eicke S, Faulkner C, Zeeman SC, Hibberd JM. Plasmodesmal connectivity in C 4 Gynandropsis gynandra is induced by light and dependent on photosynthesis. New Phytol 2024; 241:298-313. [PMID: 37882365 PMCID: PMC10952754 DOI: 10.1111/nph.19343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2022] [Accepted: 09/28/2023] [Indexed: 10/27/2023]
Abstract
In leaves of C4 plants, the reactions of photosynthesis become restricted between two compartments. Typically, this allows accumulation of C4 acids in mesophyll (M) cells and subsequent decarboxylation in the bundle sheath (BS). In C4 grasses, proliferation of plasmodesmata between these cell types is thought to increase cell-to-cell connectivity to allow efficient metabolite movement. However, it is not known whether C4 dicotyledons also show this enhanced plasmodesmal connectivity and so whether this is a general requirement for C4 photosynthesis is not clear. How M and BS cells in C4 leaves become highly connected is also not known. We investigated these questions using 3D- and 2D-electron microscopy on the C4 dicotyledon Gynandropsis gynandra as well as phylogenetically close C3 relatives. The M-BS interface of C4 G. gynandra showed higher plasmodesmal frequency compared with closely related C3 species. Formation of these plasmodesmata was induced by light. Pharmacological agents that perturbed photosynthesis reduced the number of plasmodesmata, but this inhibitory effect could be reversed by the provision of exogenous sucrose. We conclude that enhanced formation of plasmodesmata between M and BS cells is wired to the induction of photosynthesis in C4 G. gynandra.
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Affiliation(s)
- Tina B. Schreier
- Department of Plant SciencesUniversity of CambridgeDowning StreetCambridgeCB1 3EAUK
- Present address:
Department of BiologyUniversity of OxfordSouth Parks RoadOxfordOX1 3RBUK
| | - Karin H. Müller
- Cambridge Advanced Imaging Centre (CAIC)University of CambridgeDowning StreetCambridgeCB2 3DYUK
| | - Simona Eicke
- Institute of Molecular Plant BiologyETH ZurichZurichCH‐8092Switzerland
| | - Christine Faulkner
- Cell and Developmental BiologyJohn Innes CentreNorwich Research ParkNorwichNR4 7UHUK
| | - Samuel C. Zeeman
- Institute of Molecular Plant BiologyETH ZurichZurichCH‐8092Switzerland
| | - Julian M. Hibberd
- Department of Plant SciencesUniversity of CambridgeDowning StreetCambridgeCB1 3EAUK
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4
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Pathare VS, Panahabadi R, Sonawane BV, Apalla AJ, Koteyeva N, Bartley LE, Cousins AB. Altered cell wall hydroxycinnamate composition impacts leaf- and canopy-level CO2 uptake and water use in rice. Plant Physiol 2023; 194:190-208. [PMID: 37503807 DOI: 10.1093/plphys/kiad428] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 06/21/2023] [Accepted: 07/11/2023] [Indexed: 07/29/2023]
Abstract
Cell wall properties play a major role in determining photosynthetic carbon uptake and water use through their impact on mesophyll conductance (CO2 diffusion from substomatal cavities into photosynthetic mesophyll cells) and leaf hydraulic conductance (water movement from xylem, through leaf tissue, to stomata). Consequently, modification of cell wall (CW) properties might help improve photosynthesis and crop water use efficiency (WUE). We tested this using 2 independent transgenic rice (Oryza sativa) lines overexpressing the rice OsAT10 gene (encoding a "BAHD" CoA acyltransferase), which alters CW hydroxycinnamic acid content (more para-coumaric acid and less ferulic acid). Plants were grown under high and low water levels, and traits related to leaf anatomy, CW composition, gas exchange, hydraulics, plant biomass, and canopy-level water use were measured. Alteration of hydroxycinnamic acid content led to statistically significant decreases in mesophyll CW thickness (-14%) and increased mesophyll conductance (+120%) and photosynthesis (+22%). However, concomitant increases in stomatal conductance negated the increased photosynthesis, resulting in no change in intrinsic WUE (ratio of photosynthesis to stomatal conductance). Leaf hydraulic conductance was also unchanged; however, transgenic plants showed small but statistically significant increases in aboveground biomass (AGB) (+12.5%) and canopy-level WUE (+8.8%; ratio of AGB to water used) and performed better under low water levels than wild-type plants. Our results demonstrate that changes in CW composition, specifically hydroxycinnamic acid content, can increase mesophyll conductance and photosynthesis in C3 cereal crops such as rice. However, attempts to improve photosynthetic WUE will need to enhance mesophyll conductance and photosynthesis while maintaining or decreasing stomatal conductance.
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Affiliation(s)
- Varsha S Pathare
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Rahele Panahabadi
- College of Agricultural. Human, and Natural Resource Sciences, Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, USA
| | - Balasaheb V Sonawane
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Anthony Jude Apalla
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Nuria Koteyeva
- Laboratory of Anatomy and Morphology, V.L. Komarov Botanical Institute of the Russian Academy of Sciences, 197376 St. Petersburg, Russia
| | - Laura E Bartley
- College of Agricultural. Human, and Natural Resource Sciences, Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, USA
| | - Asaph B Cousins
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
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5
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Yaaran A, Erez E, Procko C, Moshelion M. Leaf hydraulic maze: Abscisic acid effects on bundle sheath, palisade, and spongy mesophyll conductance. Plant Physiol 2023; 193:1349-1364. [PMID: 37390615 PMCID: PMC10517257 DOI: 10.1093/plphys/kiad372] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 05/17/2023] [Accepted: 06/02/2023] [Indexed: 07/02/2023]
Abstract
Leaf hydraulic conductance (Kleaf) facilitates the supply of water, enabling continual CO2 uptake while maintaining plant water status. We hypothesized that bundle sheath and mesophyll cells play key roles in regulating the radial flow of water out of the xylem by responding to abscisic acid (ABA). Thus, we generated transgenic Arabidopsis thaliana plants that are insensitive to ABA in their bundle sheath (BSabi) and mesophyll (MCabi) cells. We also introduced tissue-specific fluorescent markers to distinguish between cells of the palisade mesophyll, spongy mesophyll, and bundle sheath. Both BSabi and MCabi plants showed greater Kleaf and transpiration under optimal conditions. MCabi plants had larger stomatal apertures, higher stomatal index, and greater vascular diameter and biomass relative to the wild-type (WT) and BSabi plants. In response to xylem-fed ABA, both transgenic and WT plants reduced their Kleaf and transpiration. The membrane osmotic water permeability (Pf) of the WT's spongy mesophyll was higher than that of the WT's palisade mesophyll. While the palisade mesophyll maintained a low Pf in response to high ABA, the spongy mesophyll Pf was reduced. Compared to the WT, BSabi bundle sheath cells had a higher Pf, but MCabi spongy mesophyll had an unexpected lower Pf. These results suggest that tissue-specific regulation of Pf by ABA may be confounded by whole-leaf hydraulics and transpiration. ABA increased the symplastic permeability, but its contribution to Kleaf was negligible. We suggest that the bundle sheath spongy mesophyll pathway dynamically responds to the fluctuations in water availability, while the palisade mesophyll serves as a hydraulic buffer.
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Affiliation(s)
- Adi Yaaran
- Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot 76100, Israel
| | - Eyal Erez
- Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot 76100, Israel
| | - Carl Procko
- Plant Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA
| | - Menachem Moshelion
- Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot 76100, Israel
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Lima VF, Freire FBS, Cândido-Sobrinho SA, Porto NP, Medeiros DB, Erban A, Kopka J, Schwarzländer M, Fernie AR, Daloso DM. Unveiling the dark side of guard cell metabolism. Plant Physiol Biochem 2023; 201:107862. [PMID: 37413941 DOI: 10.1016/j.plaphy.2023.107862] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 06/02/2023] [Accepted: 06/22/2023] [Indexed: 07/08/2023]
Abstract
Evidence suggests that guard cells have higher rate of phosphoenolpyruvate carboxylase (PEPc)-mediated dark CO2 assimilation than mesophyll cells. However, it is unknown which metabolic pathways are activated following dark CO2 assimilation in guard cells. Furthermore, it remains unclear how the metabolic fluxes throughout the tricarboxylic acid (TCA) cycle and associated pathways are regulated in illuminated guard cells. Here we carried out a13C-HCO3 labelling experiment in tobacco guard cells harvested under continuous dark or during the dark-to-light transition to elucidate principles of metabolic dynamics downstream of CO2 assimilation. Most metabolic changes were similar between dark-exposed and illuminated guard cells. However, illumination altered the metabolic network structure of guard cells and increased the 13C-enrichment in sugars and metabolites associated to the TCA cycle. Sucrose was labelled in the dark, but light exposure increased the 13C-labelling and leads to more drastic reductions in the content of this metabolite. Fumarate was strongly labelled under both dark and light conditions, while illumination increased the 13C-enrichment in pyruvate, succinate and glutamate. Only one 13C was incorporated into malate and citrate in either dark or light conditions. Our results indicate that several metabolic pathways are redirected following PEPc-mediated CO2 assimilation in the dark, including gluconeogenesis and the TCA cycle. We further showed that the PEPc-mediated CO2 assimilation provides carbons for gluconeogenesis, the TCA cycle and glutamate synthesis and that previously stored malate and citrate are used to underpin the specific metabolic requirements of illuminated guard cells.
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Affiliation(s)
- Valéria F Lima
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Francisco Bruno S Freire
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Silvio A Cândido-Sobrinho
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Nicole P Porto
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - David B Medeiros
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Alexander Erban
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Joachim Kopka
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Markus Schwarzländer
- Institute of Plant Biology and Biotechnology, Westfälische-Wilhelms-Universität Münster, D-48143, Münster, Germany
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Danilo M Daloso
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil.
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7
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Xiong D. Leaf anatomy does not explain the large variability of mesophyll conductance across C 3 crop species. Plant J 2023; 113:1035-1048. [PMID: 36602006 DOI: 10.1111/tpj.16098] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 12/29/2022] [Accepted: 01/02/2023] [Indexed: 06/17/2023]
Abstract
Increasing mesophyll conductance of CO2 (gm ) is a strategy to improve photosynthesis in C3 crops. However, the relative importance of different anatomical traits in determining gm in crops is unclear. Mesophyll conductance measurements were performed on 10 crops using the online carbon isotope discrimination method and the 'variable J' method in parallel. The influences of crucial leaf anatomical traits on gm were evaluated using a one-dimensional anatomical CO2 diffusion model. The gm values measured using two independent methods were compatible, although significant differences were observed in their absolute values. Quantitative analysis showed that cell wall thickness and chloroplast stroma thickness are the most important elements along the diffusion pathway. Unexpectedly, the large variability of gm across crops was not associated with any investigated leaf anatomical traits except chloroplast thickness. The gm values estimated using the anatomical model differed remarkably from the values measured in vivo in most species. However, when the species-specific effective porosity of the cell wall and the species-specific facilitation effect of CO2 diffusion across the membrane and chloroplast stoma were taken into account, the model could output gm values very similar to those measured in vivo. These results indicate that gm variation across crops is probably also driven by the effective porosity of the cell wall and effects of facilitation of CO2 transport across the membrane and chloroplast stroma in addition to the thicknesses of the elements.
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Affiliation(s)
- Dongliang Xiong
- National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
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8
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Suriyagoda LDB, Ryan MH, Gille CE, Dayrell RLC, Finnegan PM, Ranathunge K, Nicol D, Lambers H. Phosphorus fractions in leaves. New Phytol 2023; 237:1122-1135. [PMID: 36328763 DOI: 10.1111/nph.18588] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
Leaf phosphorus (P) comprises four major fractions: inorganic phosphate (Pi ), nucleic acids, phospholipids, P-containing metabolites and a residual fraction. In this review paper, we investigated whether allocation of P fractions varies among groups of terrestrial vascular plants, and is indicative of a species' strategy to use P efficiently. We found that as leaf total P concentration increases, the Pi fraction increases the most, without a plateau, while other fractions plateau. Variability of the concentrations of leaf P fractions is greatest among families > species(family) > regions > plant life forms. The percentage of total P allocated to nucleic acid-P (20-35%) and lipid-P (14-34%) varies less among families/species. High photosynthetic P-use efficiency is associated with low concentrations of all P fractions, and preferential allocation of P to metabolite-P and mesophyll cells. Sequential resorption of P from senescing leaves starts with Pi , followed by metabolite-P, and then other organic P fractions. Allocation of P to leaf P fractions varies with season. Leaf phytate concentrations vary considerably among species, associated with variation in photosynthesis and defence. Plasticity of P allocation to its fractions is important for acclimation to low soil P availability, and species-specific P allocation is needed for co-occurrence with other species.
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Affiliation(s)
- Lalith D B Suriyagoda
- Department of Crop Science, Faculty of Agriculture, University of Peradeniya, Peradeniya, 20400, Sri Lanka
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
| | - Megan H Ryan
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
- Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
| | - Clément E Gille
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
| | - Roberta L C Dayrell
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
| | - Patrick M Finnegan
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
| | - Kosala Ranathunge
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
| | - Dion Nicol
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
- Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
- Department of Primary Industries and Regional Development, Western Australia, Dryland Research Institute, Merredin, WA, 6415, Australia
| | - Hans Lambers
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
- Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Perth, WA, 6009, Australia
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Xiao Y, Sloan J, Hepworth C, Fradera‐Soler M, Mathers A, Thorley R, Baillie A, Jones H, Chang T, Chen X, Yaapar N, Osborne CP, Sturrock C, Mooney SJ, Fleming AJ, Zhu X. Defining the scope for altering rice leaf anatomy to improve photosynthesis: a modelling approach. New Phytol 2023; 237:441-453. [PMID: 36271620 PMCID: PMC10099902 DOI: 10.1111/nph.18564] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Accepted: 10/03/2022] [Indexed: 06/16/2023]
Abstract
Leaf structure plays an important role in photosynthesis. However, the causal relationship and the quantitative importance of any single structural parameter to the overall photosynthetic performance of a leaf remains open to debate. In this paper, we report on a mechanistic model, eLeaf, which successfully captures rice leaf photosynthetic performance under varying environmental conditions of light and CO2 . We developed a 3D reaction-diffusion model for leaf photosynthesis parameterised using a range of imaging data and biochemical measurements from plants grown under ambient and elevated CO2 and then interrogated the model to quantify the importance of these elements. The model successfully captured leaf-level photosynthetic performance in rice. Photosynthetic metabolism underpinned the majority of the increased carbon assimilation rate observed under elevated CO2 levels, with a range of structural elements making positive and negative contributions. Mesophyll porosity could be varied without any major outcome on photosynthetic performance, providing a theoretical underpinning for experimental data. eLeaf allows quantitative analysis of the influence of morphological and biochemical properties on leaf photosynthesis. The analysis highlights a degree of leaf structural plasticity with respect to photosynthesis of significance in the context of attempts to improve crop photosynthesis.
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Affiliation(s)
- Yi Xiao
- Center of Excellence for Molecular Plant Science, Institute of Plant Physiology and EcologyCASShanghai200032China
| | - Jen Sloan
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Chris Hepworth
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Marc Fradera‐Soler
- Division of Agriculture and Environmental Sciences, School of BiosciencesUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Andrew Mathers
- Division of Agriculture and Environmental Sciences, School of BiosciencesUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Rachel Thorley
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Alice Baillie
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Hannah Jones
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Tiangen Chang
- Center of Excellence for Molecular Plant Science, Institute of Plant Physiology and EcologyCASShanghai200032China
| | - Xingyuan Chen
- Pacific Northwest National LaboratoryRichlandWA99354USA
| | - Nazmin Yaapar
- Department of Crop Science, Faculty of AgricultureUniversiti Putra Malaysia43400SerdangMalaysia
| | - Colin P. Osborne
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Craig Sturrock
- Division of Agriculture and Environmental Sciences, School of BiosciencesUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Sacha J. Mooney
- Division of Agriculture and Environmental Sciences, School of BiosciencesUniversity of NottinghamSutton Bonington Campus, LoughboroughLeicestershireLE12 5RDUK
| | - Andrew J. Fleming
- Plants, Photosynthesis and Soil, BiosciencesUniversity of SheffieldWestern BankSheffieldS10 2TNUK
| | - Xin‐Guang Zhu
- Center of Excellence for Molecular Plant Science, Institute of Plant Physiology and EcologyCASShanghai200032China
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10
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Roig‐Oliver M, Fullana‐Pericàs M, Bota J, Flexas J. Genotype-dependent changes of cell wall composition influence physiological traits of a long and a non-long shelf-life tomato genotypes under distinct water regimes. Plant J 2022; 112:1396-1412. [PMID: 36310415 PMCID: PMC10098506 DOI: 10.1111/tpj.16018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 10/22/2022] [Accepted: 10/26/2022] [Indexed: 06/16/2023]
Abstract
Water shortage strongly affects plants' physiological performance. Since tomato (Solanum lycopersicum) non-long shelf-life (nLSL) and long shelf-life (LSL) genotypes differently face water deprivation, we subjected a nLSL and a LSL genotype to four treatments: control (well watering), short-term water deficit stress at 40% field capacity (FC) (ST 40% FC), short-term water deficit stress at 30% FC (ST 30% FC), and short-term water deficit stress at 30% FC followed by recovery (ST 30% FC-Rec). Treatments promoted genotype-dependent elastic adjustments accompanied by distinct photosynthetic responses. While the nLSL genotype largely modified mesophyll conductance (gm ) across treatments, it was kept within a narrow range in the LSL genotype. However, similar gm values were achieved under ST 30% FC conditions. Particularly, modifications in the relative abundance of cell wall components and in sub-cellular anatomic parameters such as the chloroplast surface area exposed to intercellular air space per leaf area (Sc /S) and the cell wall thickness (Tcw ) regulated gm in the LSL genotype. Instead, only changes in foliar structure at the supra-cellular level influenced gm in the nLSL genotype. Even though further experiments testing a larger range of genotypes and treatments would be valuable to support our conclusions, we show that even genotypes of the same species can present different elastic, anatomical, and cell wall composition-mediated mechanisms to regulate gm when subjected to distinct water regimes.
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Affiliation(s)
- Margalida Roig‐Oliver
- Research Group on Plant Biology under Mediterranean Conditions, Departament de BiologiaUniversitat de les Illes Balears (UIB) – Agro‐Environmental and Water Economics Institute (INAGEA)Carretera de Valldemossa Km 7.507122PalmaIlles BalearsSpain
| | - Mateu Fullana‐Pericàs
- Research Group on Plant Biology under Mediterranean Conditions, Departament de BiologiaUniversitat de les Illes Balears (UIB) – Agro‐Environmental and Water Economics Institute (INAGEA)Carretera de Valldemossa Km 7.507122PalmaIlles BalearsSpain
| | - Josefina Bota
- Research Group on Plant Biology under Mediterranean Conditions, Departament de BiologiaUniversitat de les Illes Balears (UIB) – Agro‐Environmental and Water Economics Institute (INAGEA)Carretera de Valldemossa Km 7.507122PalmaIlles BalearsSpain
| | - Jaume Flexas
- Research Group on Plant Biology under Mediterranean Conditions, Departament de BiologiaUniversitat de les Illes Balears (UIB) – Agro‐Environmental and Water Economics Institute (INAGEA)Carretera de Valldemossa Km 7.507122PalmaIlles BalearsSpain
- King Abdulaziz UniversityP.O. Box 80200Jeddah21589Saudi Arabia
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11
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Pathare VS, DiMario RJ, Koteyeva N, Cousins AB. Mesophyll conductance response to short-term changes in pCO 2 is related to leaf anatomy and biochemistry in diverse C 4 grasses. New Phytol 2022; 236:1281-1295. [PMID: 35959528 PMCID: PMC9825963 DOI: 10.1111/nph.18427] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 07/31/2022] [Indexed: 06/15/2023]
Abstract
Mesophyll CO2 conductance (gm ) in C3 species responds to short-term (minutes) changes in environment potentially due to changes in leaf anatomical and biochemical properties and measurement artefacts. Compared with C3 species, there is less information on gm responses to short-term changes in environmental conditions such as partial pressure of CO2 (pCO2 ) across diverse C4 species and the potential determinants of these responses. Using 16 C4 grasses we investigated the response of gm to short-term changes in pCO2 and its relationship with leaf anatomy and biochemistry. In general, gm increased as pCO2 decreased (statistically significant increase in 12 species), with percentage increases in gm ranging from +13% to +250%. Greater increase in gm at low pCO2 was observed in species exhibiting relatively thinner mesophyll cell walls along with greater mesophyll surface area exposed to intercellular air spaces, leaf N, photosynthetic capacity and activities of phosphoenolpyruvate carboxylase and Rubisco. Species with greater CO2 responses of gm were also able to maintain their leaf water-use efficiencies (TEi ) under low CO2 . Our study advances understanding of CO2 response of gm in diverse C4 species, identifies the key leaf traits related to this response and has implications for improving C4 photosynthetic models and TEi through modification of gm .
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Affiliation(s)
- Varsha S. Pathare
- School of Biological SciencesWashington State UniversityPullmanWA99164‐4236USA
| | - Robert J. DiMario
- School of Biological SciencesWashington State UniversityPullmanWA99164‐4236USA
| | - Nuria Koteyeva
- School of Biological SciencesWashington State UniversityPullmanWA99164‐4236USA
- Laboratory of Anatomy and MorphologyV.L. Komarov Botanical Institute of the Russian Academy of Sciences197376St PetersburgRussia
| | - Asaph B. Cousins
- School of Biological SciencesWashington State UniversityPullmanWA99164‐4236USA
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12
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Knauer J, Cuntz M, Evans JR, Niinemets Ü, Tosens T, Veromann-Jürgenson LL, Werner C, Zaehle S. Contrasting anatomical and biochemical controls on mesophyll conductance across plant functional types. New Phytol 2022. [PMID: 35801854 DOI: 10.6084/m9.figshare.19681410.v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Mesophyll conductance (gm ) limits photosynthesis by restricting CO2 diffusion between the substomatal cavities and chloroplasts. Although it is known that gm is determined by both leaf anatomical and biochemical traits, their relative contribution across plant functional types (PFTs) is still unclear. We compiled a dataset of gm measurements and concomitant leaf traits in unstressed plants comprising 563 studies and 617 species from all major PFTs. We investigated to what extent gm limits photosynthesis across PFTs, how gm relates to structural, anatomical, biochemical, and physiological leaf properties, and whether these relationships differ among PFTs. We found that gm imposes a significant limitation to photosynthesis in all C3 PFTs, ranging from 10-30% in most herbaceous annuals to 25-50% in woody evergreens. Anatomical leaf traits explained a significant proportion of the variation in gm (R2 > 0.3) in all PFTs except annual herbs, in which gm is more strongly related to biochemical factors associated with leaf nitrogen and potassium content. Our results underline the need to elucidate mechanisms underlying the global variability of gm . We emphasise the underestimated potential of gm for improving photosynthesis in crops and identify modifications in leaf biochemistry as the most promising pathway for increasing gm in these species.
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Affiliation(s)
- Jürgen Knauer
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2751, Australia
- Climate Science Centre, CSIRO Oceans and Atmosphere, Canberra, ACT, 2601, Australia
- Max Planck Institute for Biogeochemistry, 07745, Jena, Germany
| | - Matthias Cuntz
- AgroParisTech, UMR Silva, INRAE, Université de Lorraine, 54000, Nancy, France
| | - John R Evans
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51006, Tartu, Estonia
| | - Tiina Tosens
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 51006, Tartu, Estonia
| | | | - Christiane Werner
- Ecosystem Physiology, University of Freiburg, 79110, Freiburg, Germany
| | - Sönke Zaehle
- Max Planck Institute for Biogeochemistry, 07745, Jena, Germany
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13
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Hu W, Lu Z, Gu H, Ye X, Li X, Cong R, Ren T, Lu J. Potassium availability influences the mesophyll structure to coordinate the conductance of CO 2 and H 2 O during leaf expansion. Plant Cell Environ 2022; 45:2987-3000. [PMID: 35864569 DOI: 10.1111/pce.14405] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 07/11/2022] [Accepted: 07/15/2022] [Indexed: 06/15/2023]
Abstract
Leaf growth relies on photosynthesis and hydraulics to provide carbohydrates and expansion power; in turn, leaves intercept light and construct organism systems for functioning. Under potassium (K) deficiency stress, leaf area, photosynthesis and hydraulics are all affected by alterations in leaf structure. However, the connection between changes in leaf growth and function caused by the structure under K regulation is unclear. Consequently, the leaf hydraulic conductance (Kleaf ) and photosynthetic rate (A) combined with leaf anatomical characteristics of Brassica napus were continuously observed during leaf growth under different K supply levels. The results showed that Kleaf and A decreased simultaneously after leaf area with the increasing K deficiency stress. K deficiency significantly increased longitudinal mesophyll cell investment, leading to a reduced volume fraction of intercellular air-space (fias ) and decreased leaf expansion rate. Furthermore, reduced fias decreased mesophyll and chloroplast surfaces exposed to intercellular airspace and gas phase H2 O transport, which induced coordinated changes in CO2 mesophyll conductance and hydraulic conductance in extra-xylem pathways. Adequate K supply facilitated higher fias through smaller palisade tissue cell density (loose mesophyll cell arrangement) and smaller spongy tissue cell size, which coordinated CO2 and H2 O conductance and promoted leaf area expansion.
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Affiliation(s)
- Wenshi Hu
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Zhifeng Lu
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Hehe Gu
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Xiaolei Ye
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Xiaokun Li
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Rihuan Cong
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Tao Ren
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
| | - Jianwei Lu
- Microelement Research Center, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Wuhan, China
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14
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Knauer J, Cuntz M, Evans JR, Niinemets Ü, Tosens T, Veromann‐Jürgenson L, Werner C, Zaehle S. Contrasting anatomical and biochemical controls on mesophyll conductance across plant functional types. New Phytol 2022; 236:357-368. [PMID: 35801854 PMCID: PMC9804998 DOI: 10.1111/nph.18363] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 06/30/2022] [Indexed: 06/06/2023]
Abstract
Mesophyll conductance (gm ) limits photosynthesis by restricting CO2 diffusion between the substomatal cavities and chloroplasts. Although it is known that gm is determined by both leaf anatomical and biochemical traits, their relative contribution across plant functional types (PFTs) is still unclear. We compiled a dataset of gm measurements and concomitant leaf traits in unstressed plants comprising 563 studies and 617 species from all major PFTs. We investigated to what extent gm limits photosynthesis across PFTs, how gm relates to structural, anatomical, biochemical, and physiological leaf properties, and whether these relationships differ among PFTs. We found that gm imposes a significant limitation to photosynthesis in all C3 PFTs, ranging from 10-30% in most herbaceous annuals to 25-50% in woody evergreens. Anatomical leaf traits explained a significant proportion of the variation in gm (R2 > 0.3) in all PFTs except annual herbs, in which gm is more strongly related to biochemical factors associated with leaf nitrogen and potassium content. Our results underline the need to elucidate mechanisms underlying the global variability of gm . We emphasise the underestimated potential of gm for improving photosynthesis in crops and identify modifications in leaf biochemistry as the most promising pathway for increasing gm in these species.
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Affiliation(s)
- Jürgen Knauer
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2751Australia
- Climate Science CentreCSIRO Oceans and AtmosphereCanberraACT2601Australia
- Max Planck Institute for Biogeochemistry07745JenaGermany
| | - Matthias Cuntz
- AgroParisTech, UMR SilvaINRAE, Université de Lorraine54000NancyFrance
| | - John R. Evans
- ARC Centre of Excellence for Translational PhotosynthesisResearch School of BiologyThe Australian National UniversityCanberraACT2601Australia
| | - Ülo Niinemets
- Institute of Agricultural and Environmental SciencesEstonian University of Life Sciences51006TartuEstonia
| | - Tiina Tosens
- Institute of Agricultural and Environmental SciencesEstonian University of Life Sciences51006TartuEstonia
| | | | | | - Sönke Zaehle
- Max Planck Institute for Biogeochemistry07745JenaGermany
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15
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Huang G, Peng S, Li Y. Variation of photosynthesis during plant evolution and domestication: implications for improving crop photosynthesis. J Exp Bot 2022; 73:4886-4896. [PMID: 35436322 DOI: 10.1093/jxb/erac169] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 04/16/2022] [Indexed: 06/14/2023]
Abstract
Studies investigating the mechanisms underlying the variation of photosynthesis along plant phylogeny and especially during domestication are of great importance, and may provide new insights to further improve crop photosynthesis. In the present study, we compiled a database including 542 sets of data of leaf gas exchange parameters and leaf structural and chemical traits in ferns and fern allies, gymnosperms, non-crop angiosperms, and crops. We found that photosynthesis was dramatically improved from ferns and fern allies to non-crop angiosperms, and further increased in crops. The improvement of photosynthesis during phylogeny and domestication was related to increases in carbon dioxide diffusional capacities and, to a lesser extent, biochemical capacity. Cell wall thickness rather than chloroplast surface area facing intercellular airspaces drives the variation of mesophyll conductance. The variation of the maximum carboxylation rate was not related to leaf nitrogen content. The slope of the relationship between mass-based photosynthesis and nitrogen was lower in crops than in non-crop angiosperms. These findings suggest that the manipulation of cell wall thickness is the most promising approach to further improve crop photosynthesis, and that an increase of leaf nitrogen will be less efficient in improving photosynthesis in crops than in non-crop angiosperms.
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Affiliation(s)
- Guanjun Huang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Yong Li
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
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16
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Perera-Castro AV, Waterman MJ, Robinson SA, Flexas J. Limitations to photosynthesis in bryophytes: certainties and uncertainties regarding methodology. J Exp Bot 2022; 73:4592-4604. [PMID: 35524766 DOI: 10.1093/jxb/erac189] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 05/05/2022] [Indexed: 06/14/2023]
Abstract
Bryophytes are the group of land plants with the lowest photosynthetic rates, which was considered to be a consequence of their higher anatomical CO2 diffusional limitation compared with tracheophytes. However, the most recent studies assessing limitations due to biochemistry and mesophyll conductance in bryophytes reveal discrepancies based on the methodology used. In this study, we compared data calculated from two different methodologies for estimating mesophyll conductance: variable J and the curve-fitting method. Although correlated, mesophyll conductance estimated by the curve-fitting method was on average 4-fold higher than the conductance obtained by the variable J method; a large enough difference to account for the scale of differences previously shown between the biochemical and diffusional limitations to photosynthesis. Biochemical limitations were predominant when the curve-fitting method was used. We also demonstrated that variations in bryophyte relative water content during measurements can also introduce errors in the estimation of mesophyll conductance, especially for samples which are overly desiccated. Furthermore, total chlorophyll concentration and soluble proteins were significantly lower in bryophytes than in tracheophytes, and the percentage of proteins quantified as Rubisco was also significantly lower in bryophytes (<6.3% in all studied species) than in angiosperms (>16% in all non-stressed cases). Photosynthetic rates normalized by Rubisco were not significantly different between bryophytes and angiosperms. Our data suggest that the biochemical limitation to photosynthesis in bryophytes is more relevant than so far assumed.
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Affiliation(s)
- Alicia V Perera-Castro
- Universitat de les Illes Balears, Department of Biology, INAGEA, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
- Universidad de La Laguna, Department of Botany, Ecology and Plant Physiology, Av. Astrofísico Francisco Sánchez, S/N, 38200 La Laguna, Canary Islands, Spain
| | - Melinda J Waterman
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmosphere and Life Sciences, University of Wollongong, Wollongong, NSW, Australia
- Securing Antarctica's Environmental Future, University of Wollongong, Wollongong, NSW, Australia
| | - Sharon A Robinson
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmosphere and Life Sciences, University of Wollongong, Wollongong, NSW, Australia
- Securing Antarctica's Environmental Future, University of Wollongong, Wollongong, NSW, Australia
| | - Jaume Flexas
- Universitat de les Illes Balears, Department of Biology, INAGEA, Carretera de Valldemossa Km 7.5, 07122, Palma de Mallorca, Illes Balears, Spain
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17
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Huang G, Yang Y, Zhu L, Ren X, Peng S, Li Y. The structural correlations and the physiological functions of stomatal morphology and leaf structures in C 3 annual crops. Planta 2022; 256:39. [PMID: 35829784 DOI: 10.1007/s00425-022-03956-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
This study suggests that stomatal and leaf structures are highly correlated, and mesophyll cell size is an important anatomical trait determining the coordination between stomatal size and mesophyll porosity. A comprehensive study of the correlations between the structural traits and on their relationships with gas exchange parameters may provide some useful information into leaf development and improvement in efficiencies of photosynthetic CO2 fixation and transpirational water loss. In the present study, nine plant materials from eight crop species were pot grown in a growth chamber. Leaf structural traits, gas exchange, and leaf nitrogen content were measured. We found that stomatal size, mesophyll cell size (MCS), and mesophyll porosity were positively correlated and that the surface areas of mesophyll cells and chloroplasts facing intercellular air spaces were positively correlated with both stomatal density and stomatal area per leaf area (SA). These results suggested that the developments of stomata and mesophyll cells are highly correlated among different crop species. Additionally, MCS was positively correlated with leaf thickness and negatively correlated with leaf density and leaf mass per area, which indicated that MCS might play an important role in leaf structural investments and physiological functions among species. In summary, this study illustrates the correlations between stomatal and mesophyll structures, and it highlights the importance of considering the covariations among leaf traits with the intent of improving photosynthesis and iWUE.
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Affiliation(s)
- Guanjun Huang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China
| | - Yuhan Yang
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China
| | - Lele Zhu
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China
| | - Xifeng Ren
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China
| | - Yong Li
- National Key Laboratory of Crop Genetic Improvement, Ministry of Agriculture Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.
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18
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Clarke VC, De Rosa A, Massey B, George AM, Evans JR, von Caemmerer S, Groszmann M. Mesophyll conductance is unaffected by expression of Arabidopsis PIP1 aquaporins in the plasmalemma of Nicotiana. J Exp Bot 2022; 73:3625-3636. [PMID: 35184158 PMCID: PMC9162178 DOI: 10.1093/jxb/erac065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 02/18/2022] [Indexed: 05/22/2023]
Abstract
In plants with C3 photosynthesis, increasing the diffusion conductance for CO2 from the substomatal cavity to chloroplast stroma (mesophyll conductance) can improve the efficiencies of both CO2 assimilation and photosynthetic water use. In the diffusion pathway from substomatal cavity to chloroplast stroma, the plasmalemma and chloroplast envelope membranes impose a considerable barrier to CO2 diffusion, limiting photosynthetic efficiency. In an attempt to improve membrane permeability to CO2, and increase photosynthesis in tobacco, we generated transgenic lines in Nicotiana tabacum L. cv Petite Havana carrying either the Arabidopsis PIP1;2 (AtPIP1;2) or PIP1;4 (AtPIP1;4) gene driven by the constitutive dual 2x35S CMV promoter. From a collection of independent T0 transgenics, two T2 lines from each gene were characterized, with western blots confirming increased total aquaporin protein abundance in the AtPIP1;2 tobacco lines. Transient expression of AtPIP1;2-mGFP6 and AtPIP1;4-mGFP6 fusions in Nicotiana benthamiana identified that both AtPIP1;2 and AtPIP1;4 localize to the plasmalemma. Despite achieving ectopic production and correct localization, gas exchange measurements combined with carbon isotope discrimination measurements detected no increase in mesophyll conductance or CO2 assimilation rate in the tobacco lines expressing AtPIP. We discuss the complexities associated with trying to enhance gm through modified aquaporin activity.
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Affiliation(s)
- Victoria C Clarke
- Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601, Australia
| | - Annamaria De Rosa
- Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601, Australia
| | - Baxter Massey
- Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601, Australia
| | - Aleu Mani George
- Division of Plant Sciences, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601, Australia
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19
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Zhang L, Ambrose C. CLASP balances two competing cell division plane cues during leaf development. Nat Plants 2022; 8:682-693. [PMID: 35668154 DOI: 10.1038/s41477-022-01163-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 05/04/2022] [Indexed: 06/15/2023]
Abstract
Starting as small, densely packed boxes, leaf mesophyll cells expand to form an intricate mesh of interconnected cells and air spaces, the organization of which dictates the internal surface area of the leaf for light capture and gas exchange during photosynthesis. Despite their importance, little is known about the basic patterns of mesophyll cell division, and how they contribute to cell and intercellular space organization. To address this, we tracked divisions within individual cell lineages in three dimensions over time in Arabidopsis spongy mesophyll. We found that early on, successive cell division planes switch their orientation such that each new cell wall intersects the previous at a right angle, creating a new multi-cell junction (the intersection of three or more cells). These junctions then open to create intercellular spaces. During subsequent enlargement of the spaces, the division planes of the surrounding cells show an increasing tendency to tilt in the direction of their adjacent intercellular spaces. This disrupts the alternating pattern, and by extension, halts the initiation of new multi-cell junctions and intercellular spaces, but allows the expansion of existing spaces. Both division patterns are specified before mitosis by the orientation of interphase cortical microtubules, which gradually narrow to form a preprophase band in the same orientation to establish the future plane of cell division. In the absence of the microtubule-associated protein CLASP, the early alternating division plane and microtubule patterns are compromised, whereas space-oriented divisions are exacerbated. This results in large distortions of the topological relations between cells and intercellular spaces, as well as changes in their relative abundance. Our data reveal the existence of two competing cell division mechanisms that are balanced by CLASP to specify the distribution of cells and intercellular spaces in spongy mesophyll tissue.
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Affiliation(s)
- Liyong Zhang
- Department of Biology, The University of Saskatchewan, College of Arts and Science, Saskatoon, Saskatchewan, Canada
| | - Chris Ambrose
- Department of Biology, The University of Saskatchewan, College of Arts and Science, Saskatoon, Saskatchewan, Canada.
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20
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Khoshravesh R, Hoffmann N, Hanson DT. Leaf microscopy applications in photosynthesis research: identifying the gaps. J Exp Bot 2022; 73:1868-1893. [PMID: 34986250 DOI: 10.1093/jxb/erab548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 12/10/2021] [Indexed: 06/14/2023]
Abstract
Leaf imaging via microscopy has provided critical insights into research on photosynthesis at multiple junctures, from the early understanding of the role of stomata, through elucidating C4 photosynthesis via Kranz anatomy and chloroplast arrangement in single cells, to detailed explorations of diffusion pathways and light utilization gradients within leaves. In recent decades, the original two-dimensional (2D) explorations have begun to be visualized in three-dimensional (3D) space, revising our understanding of structure-function relationships between internal leaf anatomy and photosynthesis. In particular, advancing new technologies and analyses are providing fresh insight into the relationship between leaf cellular components and improving the ability to model net carbon fixation, water use efficiency, and metabolite turnover rate in leaves. While ground-breaking developments in imaging tools and techniques have expanded our knowledge of leaf 3D structure via high-resolution 3D and time-series images, there is a growing need for more in vivo imaging as well as metabolite imaging. However, these advances necessitate further improvement in microscopy sciences to overcome the unique challenges a green leaf poses. In this review, we discuss the available tools, techniques, challenges, and gaps for efficient in vivo leaf 3D imaging, as well as innovations to overcome these difficulties.
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Affiliation(s)
| | - Natalie Hoffmann
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada
| | - David T Hanson
- Department of Biology, University of New Mexico, Albuquerque, NM, USA
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21
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Ye M, Zhang Z, Huang G, Li Y. Leaf Photosynthesis and Its Temperature Response Are Different between Growth Stages and N Supplies in Rice Plants. Int J Mol Sci 2022; 23:ijms23073885. [PMID: 35409242 PMCID: PMC8999464 DOI: 10.3390/ijms23073885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Revised: 03/18/2022] [Accepted: 03/29/2022] [Indexed: 12/27/2022] Open
Abstract
Leaf photosynthesis is highly correlated with CO2-diffusion capacities, which are determined by both leaf anatomical traits and environmental stimuli. In the present study, leaf photosynthetic rate (A), stomatal conductance (gs), mesophyll conductance (gm) and the related leaf anatomical traits were studied on rice plants at two growth stages and with two different N supplies, and the response of photosynthesis to temperature (T) was also studied. We found that gm was significantly higher at mid-tillering stage and at high N treatment. The larger gm was related to a larger chloroplast surface area facing intercellular air spaces and a thinner cell wall in comparison with booting stage and zero N treatment. At mid-tillering stage and at high N treatment, gm showed a stronger temperature response. The modelling of the gm-T relationships suggested that, in comparison with booting stage and zero N treatment, the stronger temperature response of gm was related to the higher activation energy of the membrane at mid-tillering stage and at high N treatment. The findings in the present study can enhance our knowledge on the physiological and environmental determinants of photosynthesis.
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Affiliation(s)
- Miao Ye
- Ministry of Agriculture and Rural Affairs Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (M.Y.); (Z.Z.); (G.H.)
- Key Laboratory of Crop Genetics and Physiology of Jiangsu Province, Jiangsu Key Laboratory of Crop Cultivation and Physiology, Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
| | - Zhengcan Zhang
- Ministry of Agriculture and Rural Affairs Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (M.Y.); (Z.Z.); (G.H.)
| | - Guanjun Huang
- Ministry of Agriculture and Rural Affairs Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (M.Y.); (Z.Z.); (G.H.)
| | - Yong Li
- Ministry of Agriculture and Rural Affairs Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; (M.Y.); (Z.Z.); (G.H.)
- Correspondence: ; Tel.: +86-27-8728-5082; Fax: +86-27-8728-8188
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Dai X, Tu X, Du B, Dong P, Sun S, Wang X, Sun J, Li G, Lu T, Zhong S, Li P. Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize. Plant J 2022; 109:675-692. [PMID: 34783109 DOI: 10.1111/tpj.15586] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 11/04/2021] [Accepted: 11/09/2021] [Indexed: 06/13/2023]
Abstract
C4 plants partition photosynthesis enzymes between the bundle sheath (BS) and the mesophyll (M) cells for the better delivery of CO2 to RuBisCO and to reduce photorespiration. To better understand how C4 photosynthesis is regulated at the transcriptional level, we performed RNA-seq, ATAC-seq, ChIP-seq and Bisulfite-seq (BS-seq) on BS and M cells isolated from maize leaves. By integrating differentially expressed genes with chromatin features, we found that chromatin accessibility coordinates with epigenetic features, especially H3K27me3 modification and CHH methylation, to regulate cell type-preferentially enriched gene expression. Not only the chromatin-accessible regions (ACRs) proximal to the genes (pACRs) but also the distal ACRs (dACRs) are determinants of cell type-preferentially enriched expression. We further identified cell type-preferentially enriched motifs, e.g. AAAG for BS cells and TGACC/T for M cells, and determined their corresponding transcription factors: DOFs and WRKYs. The complex interaction between cis and trans factors in the preferential expression of C4 genes was also observed. Interestingly, cell type-preferentially enriched gene expression can be fine-tuned by the coordination of multiple chromatin features. Such coordination may be critical in ensuring the cell type-specific function of key C4 genes. Based on the observed cell type-preferentially enriched expression pattern and coordinated chromatin features, we predicted a set of functionally unknown genes, e.g. Zm00001d042050 and Zm00001d040659, to be potential key C4 genes. Our findings provide deep insight into the architectures associated with C4 gene expression and could serve as a valuable resource to further identify the regulatory mechanisms present in C4 species.
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Affiliation(s)
- Xiuru Dai
- State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Xiaoyu Tu
- Joint Center for Single Cell Biology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Baijuan Du
- State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Pengfei Dong
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Shilei Sun
- State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Xianglan Wang
- State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Jing Sun
- Biotechnology Research Institute/National Key Facility for Gene Resources and Gene Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Gang Li
- State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
| | - Tiegang Lu
- Biotechnology Research Institute/National Key Facility for Gene Resources and Gene Improvement, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Silin Zhong
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Pinghua Li
- State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, China
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23
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Ni J, Li Y, Xiang Y, Yang X, Jia L, Yue J, Wang H. Autophagic degradation of the chloroplastic 2-phosphoglycolate phosphatase TaPGLP1 in wheat. Plant Cell Rep 2022; 41:473-487. [PMID: 34981152 DOI: 10.1007/s00299-021-02820-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 11/23/2021] [Indexed: 06/14/2023]
Abstract
KEY MESSAGE TaPGLP1, a chloroplast stromal 2-phosphoglycolate phosphatase of wheat, is an ATG8-interacting protein and undergoes autophagic degradation in starvation-treated wheat mesophyll protoplasts. Selective autophagy in plants has been shown to target diverse cellular cargoes including whole chloroplasts (Chlorophagy) and several chloroplast components (Piecemeal chlorophagy). Most cargoes of selective autophagy are captured by the autophagic machinery through their direct or indirect interactions with the autophagy-essential factor ATG8. Here, we reported a new ATG8-interacting cargo of piecemeal chlorophagy, the wheat photorespiratory 2-phosphoglycolate phosphatase TaPGLP1. The TaPGLP1-mCherry fusions expressed in wheat protoplasts located in the chloroplast stroma. Strikingly, these fusions are translocated into newly formed chloroplast surface protrusions after a long time incubation of protoplasts in a nutrition-free solution. Visualization of co-expressed TaPGLP1-mCherry and the autophagy marker GFP-TaATG8a revealed physical associations of TaPGLP1-mCherry-accumulating chloroplast protrusions with autophagic structures, implying the delivery of TaPGLP1-mCherry fusions from chloroplasts to the autophagic machinery. TaPGLP1-mCherry fusions were also detected in the GFP-TaATG8a-labelled autophagic bodies undergoing degradation in the vacuoles, which suggested the autophagic degradation of TaPGLP1. This autophagic degradation of TaPGLP1 was further demonstrated by the enhanced stability of TaPGLP1-mCherry in protoplasts with impaired autophagy. Expression of TaPGLP1-mCherry in protoplasts stimulated an enhanced autophagy level probably adopted by cells to degrade the over-produced TaPGLP1-mCherry fusions. Results from gene silencing assays showed the requirement of ATG2s and ATG7s in the autophagic degradation of TaPGLP1. Additionally, TaPGLP1 was shown to interact with ATG8 family members. Collectively, our data suggest that autophagy mediates the degradation of the chloroplast stromal protein TaPGLP1 in starvation-treated mesophyll protoplasts.
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Affiliation(s)
- Jiayao Ni
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China
| | - Yuru Li
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China
| | - Yue Xiang
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China
| | - Xiangyun Yang
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China
| | - Lei Jia
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China
| | - Jieyu Yue
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China
| | - Huazhong Wang
- College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, 393#, BinShuiXi Road, Xiqing, Tianjin, 300387, China.
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24
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Wang Y, Sun J, Deng C, Teng S, Chen G, Chen Z, Cui X, Brutnell TP, Han X, Zhang Z, Lu T. Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues. Plant J 2022; 109:523-540. [PMID: 34750914 DOI: 10.1111/tpj.15573] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 11/01/2021] [Indexed: 06/13/2023]
Abstract
The translocation of photosynthate carbohydrates, such as sucrose, is critical for plant growth and crop yield. Previous studies have revealed that sugar transporters, plasmodesmata and sieve plates act as important controllers in sucrose loading into and unloading from phloem in the vascular system. However, other pivotal steps for the regulation of sucrose movement remain largely elusive. In this study, characterization of two starch excesses in mesophyll (sem) mutants and dye and sucrose export assays were performed to provide insights into the regulatory networks that drive source-sink relations in rice. Map-based cloning identified two allelic mutations in a gene encoding a GLUCAN SYNTHASE-LIKE (GSL) protein, thus indicating a role for SEM1 in callose biosynthesis. Subcellular localization in rice showed that SEM1 localized to the plasma membrane. In situ expression analysis and GUS staining showed that SEM1 was mainly expressed in vascular phloem cells. Reduced sucrose transport was found in the sem1-1/1-2 mutant, which led to excessive starch accumulation in source leaves and inhibited photosynthesis. Paraffin section and transmission electron microscopy experiments revealed that less-developed vascular cells (VCs) in sem1-1/1-2 potentially disturbed sugar movement. Moreover, dye and sugar trafficking experiments revealed that aberrant VC development was the main reason for the pleiotropic phenotype of sem1-1/1-2. In total, efficient sucrose loading into the phloem benefits from an optional number of VCs with a large vacuole that could act as a buffer holding tank for sucrose passing from the vascular bundle sheath.
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Affiliation(s)
- Yanwei Wang
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Jing Sun
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Chen Deng
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Shouzhen Teng
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Guoxin Chen
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Zhenhua Chen
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Xuean Cui
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Thomas P Brutnell
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Xiao Han
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
- College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China
| | - Zhiguo Zhang
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
| | - Tiegang Lu
- Joint CAAS/IRRI Laboratory for Photosynthetic Enhancement, Biotechnology Research Institute/National Key Facility for Genetic Resources and Gene Improvement, The Chinese Academy of Agricultural Sciences, Beijing, 100081, P. R. China
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25
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Crawford JD, Cousins AB. Limitation of C4 photosynthesis by low carbonic anhydrase activity increases with temperature but does not influence mesophyll CO2 conductance. J Exp Bot 2022; 73:927-938. [PMID: 34698863 DOI: 10.1093/jxb/erab464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 10/23/2021] [Indexed: 06/13/2023]
Abstract
The CO2-concentrating mechanism (CCM) in C4 plants is initiated by the uptake of bicarbonate (HCO3-) via phosphoenolpyruvate carboxylase (PEPC). Generation of HCO3- for PEPC is determined by the interaction between mesophyll CO2 conductance and the hydration of CO2 to HCO3- by carbonic anhydrase (CA). Genetic reduction of CA was previously shown not to limit C4 photosynthesis under ambient atmospheric partial pressures of CO2 (pCO2). However, CA activity varies widely across C4 species and it is unknown if there are specific environmental conditions (e.g. high temperature) where CA may limit HCO3- production for C4 photosynthesis. Additionally, CA activity has been suggested to influence mesophyll conductance, but this has not been experimentally tested. We hypothesize that CA activity can limit PEPC at high temperatures, particularly at low pCO2, but does not directly influence gm. Here we tested the influence of genetically reduced CA activity on photosynthesis and gm in the C4 plant Zea mays under a range of pCO2 and temperatures. Reduced CA activity limited HCO3- production for C4 photosynthesis at low pCO2 as temperatures increased, but did not influence mesophyll conductance. Therefore, high leaf CA activity may enhance C4 photosynthesis under high temperature when stomatal conductance restricts the availability of atmospheric CO2.
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Affiliation(s)
- Joseph D Crawford
- School of Biological Sciences, Washington State University, Pullman, WA, USA
| | - Asaph B Cousins
- School of Biological Sciences, Washington State University, Pullman, WA, USA
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26
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Zait Y, Ferrero‐Serrano Á, Assmann SM. The α subunit of the heterotrimeric G protein regulates mesophyll CO 2 conductance and drought tolerance in rice. New Phytol 2021; 232:2324-2338. [PMID: 34515342 PMCID: PMC9293471 DOI: 10.1111/nph.17730] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 09/01/2021] [Indexed: 05/03/2023]
Abstract
Mesophyll conductance gm determines CO2 diffusion rates from mesophyll intercellular air spaces to the chloroplasts and is an important factor limiting photosynthesis. Increasing gm in cultivated plants is a potential strategy to increase photosynthesis and intrinsic water use efficiency (WUEi ). The anatomy of the leaf and metabolic factors such as aquaporins and carbonic anhydrases have been identified as important determinants of gm . However, genes involved in the regulation and modulation of gm remain largely unknown. In this work, we investigated the role of heterotrimeric G proteins in gm and drought tolerance in rice d1 mutants, which harbor a null mutation in the Gα subunit gene, RGA1. d1 mutants in both cv Nipponbare and cv Taichung 65 exhibited increased gm , fostering improvement in photosynthesis, WUEi , and drought tolerance compared with wild-type. The increased surface area of mesophyll cells and chloroplasts exposed to intercellular airspaces and the reduced cell wall and chloroplast thickness in the d1 mutant are evident contributors to the increase in gm . Our results indicate that manipulation of heterotrimeric G protein signaling has the potential to improve crop WUEi and productivity under drought.
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Affiliation(s)
- Yotam Zait
- Biology DepartmentPenn State University208 Mueller LaboratoryUniversity ParkPA16802USA
| | - Ángel Ferrero‐Serrano
- Biology DepartmentPenn State University208 Mueller LaboratoryUniversity ParkPA16802USA
| | - Sarah M. Assmann
- Biology DepartmentPenn State University208 Mueller LaboratoryUniversity ParkPA16802USA
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27
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Li S, Hamani AKM, Zhang Y, Liang Y, Gao Y, Duan A. Coordination of leaf hydraulic, anatomical, and economical traits in tomato seedlings acclimation to long-term drought. BMC Plant Biol 2021; 21:536. [PMID: 34781896 PMCID: PMC8591842 DOI: 10.1186/s12870-021-03304-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Accepted: 10/29/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Leaf hydraulic and economics traits are critical for balancing plant water and CO2 exchange, and their relationship has been widely studied. Leaf anatomical traits determine the efficiency of CO2 diffusion within mesophyll structure. However, it remains unclear whether leaf anatomical traits are associated with leaf hydraulic and economics traits acclimation to long-term drought. RESULTS To address this knowledge gap, eight hydraulic traits, including stomatal and venation structures, four economics traits, including leaf dry mass per area (LMA) and the ratio between palisade and spongy mesophyll thickness (PT/ST), and four anatomical traits related to CO2 diffusion were measured in tomato seedlings under the long-term drought conditions. Redundancy analysis indicated that the long-term drought decreased stomatal conductance (gs) mainly due to a synchronized reduction in hydraulic structure such as leaf hydraulic conductance (Kleaf) and major vein width. Simultaneously, stomatal aperture on the adaxial surface and minor vein density (VDminor) also contributed a lot to this reduction. The decreases in mesophyll thickness (Tmes) and chlorophyll surface area exposed to leaf intercellular air spaces (Sc/S) were primarily responsible for the decline of mesophyll conductance (gm) thereby affecting photosynthesis. Drought increased leaf density (LD) thus limited CO2 diffusion. In addition, LMA may not be important in regulating gm in tomato under drought. Principal component analysis revealed that main anatomical traits such as Tmes and Sc/S were positively correlated to Kleaf, VDminor and leaf thickness (LT), while negatively associated with PT/ST. CONCLUSIONS These findings indicated that leaf anatomy plays an important role in maintaining the balance between water supply and CO2 diffusion responses to drought. There was a strong coordination between leaf hydraulic, anatomical, and economical traits in tomato seedlings acclimation to long-term drought.
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Affiliation(s)
- Shuang Li
- Farmland Irrigation Research Institute, Key Laboratory of Crop Water Use and Regulation, Chinese Academy of Agriculture Sciences, Ministry of Agriculture and Rural Affairs, Xinxiang, Henan, 453002, China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Abdoul Kader Mounkaila Hamani
- Farmland Irrigation Research Institute, Key Laboratory of Crop Water Use and Regulation, Chinese Academy of Agriculture Sciences, Ministry of Agriculture and Rural Affairs, Xinxiang, Henan, 453002, China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yingying Zhang
- Farmland Irrigation Research Institute, Key Laboratory of Crop Water Use and Regulation, Chinese Academy of Agriculture Sciences, Ministry of Agriculture and Rural Affairs, Xinxiang, Henan, 453002, China
| | - Yueping Liang
- Farmland Irrigation Research Institute, Key Laboratory of Crop Water Use and Regulation, Chinese Academy of Agriculture Sciences, Ministry of Agriculture and Rural Affairs, Xinxiang, Henan, 453002, China
| | - Yang Gao
- Farmland Irrigation Research Institute, Key Laboratory of Crop Water Use and Regulation, Chinese Academy of Agriculture Sciences, Ministry of Agriculture and Rural Affairs, Xinxiang, Henan, 453002, China.
| | - Aiwang Duan
- Farmland Irrigation Research Institute, Key Laboratory of Crop Water Use and Regulation, Chinese Academy of Agriculture Sciences, Ministry of Agriculture and Rural Affairs, Xinxiang, Henan, 453002, China.
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28
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Chotewutmontri P, Barkan A. Ribosome profiling elucidates differential gene expression in bundle sheath and mesophyll cells in maize. Plant Physiol 2021; 187:59-72. [PMID: 34618144 PMCID: PMC8418429 DOI: 10.1093/plphys/kiab272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 06/10/2021] [Indexed: 05/20/2023]
Abstract
The efficiencies offered by C4 photosynthesis have motivated efforts to understand its biochemical, genetic, and developmental basis. Reactions underlying C4 traits in most C4 plants are partitioned between two cell types, bundle sheath (BS), and mesophyll (M) cells. RNA-seq has been used to catalog differential gene expression in BS and M cells in maize (Zea mays) and several other C4 species. However, the contribution of translational control to maintaining the distinct proteomes of BS and M cells has not been addressed. In this study, we used ribosome profiling and RNA-seq to describe translatomes, translational efficiencies, and microRNA abundance in BS- and M-enriched fractions of maize seedling leaves. A conservative interpretation of our data revealed 182 genes exhibiting cell type-dependent differences in translational efficiency, 31 of which encode proteins with core roles in C4 photosynthesis. Our results suggest that non-AUG start codons are used preferentially in upstream open reading frames of BS cells, revealed mRNA sequence motifs that correlate with cell type-dependent translation, and identified potential translational regulators that are differentially expressed. In addition, our data expand the set of genes known to be differentially expressed in BS and M cells, including genes encoding transcription factors and microRNAs. These data add to the resources for understanding the evolutionary and developmental basis of C4 photosynthesis and for its engineering into C3 crops.
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Affiliation(s)
- Prakitchai Chotewutmontri
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403 USA
- Author for communication:
| | - Alice Barkan
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403 USA
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29
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Huang X, Wang Z, Huang J, Peng S, Xiong D. Mesophyll conductance variability of rice aquaporin knockout lines at different growth stages and growing environments. Plant J 2021; 107:1503-1512. [PMID: 34181799 DOI: 10.1111/tpj.15397] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Revised: 06/09/2021] [Accepted: 06/21/2021] [Indexed: 06/13/2023]
Abstract
The plasma membrane subfamily of aquaporins [plasma membrane intrinsic proteins (PIPs)], which facilitates the CO2 diffusion across membranes, is proposed to play an important role in mesophyll conductance to CO2 (gm ), a major limiting factor of photosynthesis. However, recent studies implied no causal relationship between gm and PIPs because they failed to repeat the previous observed differences in gm between PIP knockout lines and their wild-type. The contrasting results on the role of PIPs in gm were interpreted as the different growth conditions among studies, which has never been tested. Here, we assessed whether the differences in gm between wild-type and PIP knockout lines, Ospip1;1, Ospip1;2 and Ospip2;1, varied with growth condition (field versus pot condition) and growth stages in rice. Under field conditions, no differences were observed in plant performance, photosynthetic rate (A) and gm between PIP knockout lines and the wild-type. However, in agreement with previous studies, two out of three knockout lines showed significant declines in tiller number, plant height, A and gm under pot conditions. Moreover, we found that the differences in A and gm between PIP knockout lines and the wild-type varied with the growth stage of the plants. Our results showed that the differences in gm between PIP knockout lines and wild-type were depending on the growth environments and stage of the plants, and further efforts are required to reveal the underlying mechanisms.
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Affiliation(s)
- Xianhong Huang
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Zhixin Wang
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Jianliang Huang
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Shaobing Peng
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Dongliang Xiong
- National Key Laboratory of Crop Genetic Improvement, MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
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30
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Li H, Li J, Zhang X, Shi T, Chai X, Hou P, Wang Y. Mesophyll conductance, photoprotective process and optimal N partitioning are essential to the maintenance of photosynthesis at N deficient condition in a wheat yellow-green mutant (Triticum aestivum L.). J Plant Physiol 2021; 263:153469. [PMID: 34252704 DOI: 10.1016/j.jplph.2021.153469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 06/28/2021] [Accepted: 06/28/2021] [Indexed: 06/13/2023]
Abstract
The major effect of nitrogen (N) deficiency is the inhibition on CO2 assimilation regulated by light energy absorption, transport and conversion, as well as N allocation. In this study, a yellow-green wheat mutant (Jimai5265yg) and its wild type (Jimai5265, WT) were compared between 0 mM N (N0) and 14 mM N (N14) treatments using hydroponic experiments. The mutant exhibited higher photosynthetic efficiency (An) than WT despite low chlorophyll (Chl) content in non-stressed conditions. The photosynthetic advantages of the mutant were maintained under N deficient condition. The quantitative analysis of limitations to photosynthesis revealed that CO2 diffusion associated with mesophyll conductance (gm) was the dominant limitation. Relative easiness to gain CO2 in the chloroplast contributed to the higher An of Jimai5265yg. N deficiency induced the photoinhibition of PSII, but the cyclic electron transport and photochemical activity of PSI was higher in Jimai5265yg compared to Jimai5265, which was a protective mechanism to avoid photodamage. Because of the sharp drop of An, N deficient seedlings had much lower photosynthetic N use efficiency (PNUE). However, N deficiency increased the relative content of photosynthetic N (Npsn) and decreased the relative content of storage N (Nstore). The range of change in N partitioning induced by N deficiency was smaller for Jimai5265yg compared to WT. The less insensitive to N deficiency for the mutant in terms of photosynthetic property and N partitioning suggested that gm, cyclic electron transport around PSI and more optimal N partitioning pattern is necessary to sustain photosynthesis under N deficient condition.
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Affiliation(s)
- Hongxia Li
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China
| | - Junjie Li
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China
| | - Xuhui Zhang
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China
| | - Tingrui Shi
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China
| | - Xinyu Chai
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China
| | - Peijia Hou
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China
| | - Yu Wang
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, PR China.
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Berkowitz O, Xu Y, Liew LC, Wang Y, Zhu Y, Hurgobin B, Lewsey MG, Whelan J. RNA-seq analysis of laser microdissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue-specific transcriptional responses to multiple stress treatments. Plant J 2021; 107:938-955. [PMID: 33974297 DOI: 10.1111/tpj.15314] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 04/28/2021] [Accepted: 05/05/2021] [Indexed: 06/12/2023]
Abstract
Acclimation of plants to adverse conditions requires the coordination of gene expression and signalling pathways between tissues and cell types. As the energy and carbon capturing organs, leaves are significantly affected by abiotic and biotic stresses. However, tissue- or cell type-specific analyses of stress responses have focussed on the Arabidopsis root. Here, we comparatively explore the transcriptomes of three leaf tissues (epidermis, mesophyll, vasculature) after induction of diverse stress pathways by chemical stimuli (antimycin A, 3-amino-1,2,4-triazole, methyl viologen, salicylic acid) and ultraviolet light in Arabidopsis using laser capture microdissection followed by RNA sequencing. Stimulation of stress pathways caused an overall reduction in the number of genes expressed in a tissue-specific manner, though a small subset gained or changed their tissue specificity. We find no evidence of a common stress response, with only a few genes consistently responsive to two or more treatments in the analysed tissues. However, differentially expressed genes overlap between tissues for individual treatments. A focussed analysis provided evidence for an interaction of auxin and ethylene that mediates retrograde signalling during mitochondrial dysfunction specifically in the epidermis, and a gene regulatory network defined the hierarchy of interactions. Taken together, we have generated an extensive reference dataset that will be valuable for future experiments analysing transcriptional responses on a tissue or single-cell level. Our results will enable the tailoring of the tissue-specific engineering of stress-tolerant plants.
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Affiliation(s)
- Oliver Berkowitz
- Australian Research Council Centre of Excellence in Plant Energy Biology, AgriBio Building La Trobe University, Bundoora, Victoria, 3086, Australia
- Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - Yue Xu
- Australian Research Council Centre of Excellence in Plant Energy Biology, AgriBio Building La Trobe University, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - Lim Chee Liew
- Australian Research Council Centre of Excellence in Plant Energy Biology, AgriBio Building La Trobe University, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - Yan Wang
- Australian Research Council Centre of Excellence in Plant Energy Biology, AgriBio Building La Trobe University, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - Yanqiao Zhu
- Australian Research Council Centre of Excellence in Plant Energy Biology, AgriBio Building La Trobe University, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - Bhavna Hurgobin
- Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - Mathew G Lewsey
- Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
| | - James Whelan
- Australian Research Council Centre of Excellence in Plant Energy Biology, AgriBio Building La Trobe University, Bundoora, Victoria, 3086, Australia
- Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
- Department of Animal, Plant and Soil Science, La Trobe University, AgriBio Building, Bundoora, Victoria, 3086, Australia
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32
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Hua L, Stevenson SR, Reyna-Llorens I, Xiong H, Kopriva S, Hibberd JM. The bundle sheath of rice is conditioned to play an active role in water transport as well as sulfur assimilation and jasmonic acid synthesis. Plant J 2021; 107:268-286. [PMID: 33901336 DOI: 10.1111/tpj.15292] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 04/16/2021] [Accepted: 04/20/2021] [Indexed: 06/12/2023]
Abstract
Leaves comprise multiple cell types but our knowledge of the patterns of gene expression that underpin their functional specialization is fragmentary. Our understanding and ability to undertake the rational redesign of these cells is therefore limited. We aimed to identify genes associated with the incompletely understood bundle sheath of C3 plants, which represents a key target associated with engineering traits such as C4 photosynthesis into Oryza sativa (rice). To better understand the veins, bundle sheath and mesophyll cells of rice, we used laser capture microdissection followed by deep sequencing. Gene expression of the mesophyll is conditioned to allow coenzyme metabolism and redox homeostasis, as well as photosynthesis. In contrast, the bundle sheath is specialized in water transport, sulphur assimilation and jasmonic acid biosynthesis. Despite the small chloroplast compartment of bundle sheath cells, substantial photosynthesis gene expression was detected. These patterns of gene expression were not associated with the presence or absence of specific transcription factors in each cell type, but were instead associated with gradients in expression across the leaf. Comparative analysis with C3 Arabidopsis identified a small gene set preferentially expressed in the bundle sheath cells of both species. This gene set included genes encoding transcription factors from 14 orthogroups and proteins allowing water transport, sulphate assimilation and jasmonic acid synthesis. The most parsimonious explanation for our findings is that bundle sheath cells from the last common ancestor of rice and Arabidopsis were specialized in this manner, and as the species diverged these patterns of gene expression have been maintained.
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Affiliation(s)
- Lei Hua
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Sean R Stevenson
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Ivan Reyna-Llorens
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Haiyan Xiong
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Stanislav Kopriva
- Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Zülpicher Str. 47b, Cologne, 50674, Germany
| | - Julian M Hibberd
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
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33
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Hotto AM, Salesse-Smith C, Lin M, Busch FA, Simpson I, Stern DB. Rubisco production in maize mesophyll cells through ectopic expression of subunits and chaperones. J Exp Bot 2021; 72:4930-4937. [PMID: 33928359 DOI: 10.1093/jxb/erab189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 04/26/2021] [Indexed: 06/12/2023]
Abstract
C4 plants, such as maize, strictly compartmentalize Rubisco to bundle sheath chloroplasts. The molecular basis for the restriction of Rubisco from the more abundant mesophyll chloroplasts is not fully understood. Mesophyll chloroplasts transcribe the Rubisco large subunit gene and, when normally quiescent transcription of the nuclear Rubisco small subunit gene family is overcome by ectopic expression, mesophyll chloroplasts still do not accumulate measurable Rubisco. Here we show that a combination of five ubiquitin promoter-driven nuclear transgenes expressed in maize leads to mesophyll accumulation of assembled Rubisco. These encode the Rubisco large and small subunits, Rubisco assembly factors 1 and 2, and the assembly factor Bundle sheath defective 2. In these plants, Rubisco large subunit accumulates in mesophyll cells, and appears to be assembled into a holoenzyme capable of binding the substrate analog CABP (carboxyarabinitol bisphosphate). Isotope discrimination assays suggest, however, that mesophyll Rubisco is not participating in carbon assimilation in these plants, most probably due to a lack of the substrate ribulose 1,5-bisphosphate and/or Rubisco activase. Overall, this work defines a minimal set of Rubisco assembly factors in planta and may help lead to methods of regulating the C4 pathway.
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Affiliation(s)
| | | | - Myat Lin
- Cornell University, Ithaca, NY, USA
| | - Florian A Busch
- School of Biosciences, and Birmingham Institute of Forest Research, University of Birmingham, Edgbaston, Birmingham, UK
- Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
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Ermakova M, Bellasio C, Fitzpatrick D, Furbank RT, Mamedov F, von Caemmerer S. Upregulation of bundle sheath electron transport capacity under limiting light in C 4 Setaria viridis. Plant J 2021; 106:1443-1454. [PMID: 33772896 PMCID: PMC9291211 DOI: 10.1111/tpj.15247] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 02/15/2021] [Accepted: 03/22/2021] [Indexed: 05/22/2023]
Abstract
C4 photosynthesis is a biochemical pathway that operates across mesophyll and bundle sheath (BS) cells to increase CO2 concentration at the site of CO2 fixation. C4 plants benefit from high irradiance but their efficiency decreases under shade, causing a loss of productivity in crop canopies. We investigated shade acclimation responses of Setaria viridis, a model monocot of NADP-dependent malic enzyme subtype, focussing on cell-specific electron transport capacity. Plants grown under low light (LL) maintained CO2 assimilation rates similar to high light plants but had an increased chlorophyll and light-harvesting-protein content, predominantly in BS cells. Photosystem II (PSII) protein abundance, oxygen-evolving activity and the PSII/PSI ratio were enhanced in LL BS cells, indicating a higher capacity for linear electron flow. Abundances of PSI, ATP synthase, Cytochrome b6 f and the chloroplast NAD(P)H dehydrogenase complex, which constitute the BS cyclic electron flow machinery, were also increased in LL plants. A decline in PEP carboxylase activity in mesophyll cells and a consequent shortage of reducing power in BS chloroplasts were associated with a more oxidised plastoquinone pool in LL plants and the formation of PSII - light-harvesting complex II supercomplexes with an increased oxygen evolution rate. Our results suggest that the supramolecular composition of PSII in BS cells is adjusted according to the redox state of the plastoquinone pool. This discovery contributes to the understanding of the acclimation of PSII activity in C4 plants and will support the development of strategies for crop improvement, including the engineering of C4 photosynthesis into C3 plants.
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Affiliation(s)
- Maria Ermakova
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Chandra Bellasio
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
- University of the Balearic IslandsPalmaIlles Balears07122Spain
| | - Duncan Fitzpatrick
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Robert T. Furbank
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Fikret Mamedov
- Molecular BiomimeticsDepartment of Chemistry – Ångström LaboratoryUppsala UniversityUppsala75 120Sweden
| | - Susanne von Caemmerer
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
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35
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Zhang L, McEvoy D, Le Y, Ambrose C. Live imaging of microtubule organization, cell expansion, and intercellular space formation in Arabidopsis leaf spongy mesophyll cells. Plant Cell 2021; 33:623-641. [PMID: 33955495 PMCID: PMC8136880 DOI: 10.1093/plcell/koaa036] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 11/24/2020] [Indexed: 05/30/2023]
Abstract
Leaf spongy mesophyll cells form an interconnected network of branched cells and intercellular spaces to maximize the surface area available for light capture and photosynthetic gas exchange. To investigate the morphogenetic events leading to cell separation and branching in Arabidopsis thaliana, we used mesophyll-specific promoters to facilitate imaging of mesophyll cell shape and microtubule (MT) organization over multiple spatiotemporal scales without interference from the overlying epidermal cells. We show that cells enlarge by selective expansion of cell wall regions in contact with intercellular spaces. Cell-cell contacts remain relatively fixed in size, forming the termini of interconnecting branches. Surprisingly, classic schizogeny (de-adhesion of neighboring cells) is relatively infrequent, being related to the local topology of cell junctions during early expansion. Intercellular spaces cue the position of stable MT bundles, which in turn promote efficient dilation of intercellular spaces and cell branching. Our data provide insights into mesophyll morphogenesis and MT organization and lay the groundwork for future investigations.
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Affiliation(s)
- Liyong Zhang
- Department of Biology, College of Arts and Science, University of Saskatchewan, Saskatoon, S7N 5E2, Saskatchewan, Canada
| | - Delanie McEvoy
- Department of Biology, College of Arts and Science, University of Saskatchewan, Saskatoon, S7N 5E2, Saskatchewan, Canada
| | - Yen Le
- Department of Biology, College of Arts and Science, University of Saskatchewan, Saskatoon, S7N 5E2, Saskatchewan, Canada
| | - Chris Ambrose
- Department of Biology, College of Arts and Science, University of Saskatchewan, Saskatoon, S7N 5E2, Saskatchewan, Canada
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36
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Maheshwari C, Coe RA, Karki S, Covshoff S, Tapia R, Tyagi A, Hibberd JM, Furbank RT, Quick WP, Lin HC. Targeted knockdown of ribulose-1, 5-bisphosphate carboxylase-oxygenase in rice mesophyll cells. J Plant Physiol 2021; 260:153395. [PMID: 33684805 PMCID: PMC8090977 DOI: 10.1016/j.jplph.2021.153395] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 02/06/2021] [Accepted: 02/21/2021] [Indexed: 05/22/2023]
Abstract
We generated antisense constructs targeting two of the five Rubisco small subunit genes (OsRBCS2 and 4) which account for between 30-40 % of the RBCS transcript abundance in leaf blades. The constructs were driven by a maize phosphoenolpyruvate carboxylase (PEPC) promoter known to have enriched expression in mesophyll cells (MCs). In the resulting lines leaf, Rubisco protein content was reduced by between 30-50 % and CO2 assimilation rate was limited under photorespiratory and non-photorespiratory conditions. A relationship between Rubisco protein content and CO2 assimilation rate was found. This was associated with a significant reduction in dry biomass accumulation and grain yield of between 37-70%. In addition to serving as a resource for reducing Rubisco accumulation in a cell-preferential manner, these lines allow us to characterize gene function and isoform specific suppression on photosynthesis and growth. Our results suggest that the knockdown of multiple genes is required to completely reduce Rubisco accumulation in MCs.
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Affiliation(s)
- Chirag Maheshwari
- C4Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Robert A Coe
- C4Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Shanta Karki
- C4Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Sarah Covshoff
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, United Kingdom
| | - Ronald Tapia
- C4Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Aruna Tyagi
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Julian M Hibberd
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, United Kingdom
| | - Robert T Furbank
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Acton, 2601, Australia
| | - William Paul Quick
- C4Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines; Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, United Kingdom
| | - Hsiang-Chun Lin
- C4Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines.
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Sun X, Huang SR, Du JB, Wang XC, Yang WY. Potential importance of malate diffusion in the response of maize photosynthesis to heterogeneous light. Plant Physiol Biochem 2021; 162:69-73. [PMID: 33667968 DOI: 10.1016/j.plaphy.2021.02.037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 02/23/2021] [Indexed: 06/12/2023]
Abstract
It is well known that the photosynthetic performance of a leaf is highly dependent on the systemic regulation from distal parts within a plant under light heterogeneity. However, there are few studies focusing on C4-specific processes. In the present study, two cultivars of maize (Zea mays L.), 'Rongyu 1210' (RY) and 'Zhongdan 808' (ZD), were treated with heterogeneous light (HL). The net photosynthetic rate (Pn) of newly developed leaves was found to increase in HL-treated RY, while it decreased in HL-treated ZD. Result also showed a negative correlation between the Pn and the content of malate, a key metabolite in C4 photosynthesis, in these two cultivars. In HL-treated ZD, malate content increased with a decline in the abundance of NADP-malic enzyme (EC 1.1.1.40), suggesting that less malate was decarboxylated. Moreover, a restriction of malate diffusion is proposed in HL-treated ZD, since the interface length between mesophyll cells (MC) and bundle sheath cells (BSC) decreased. In contrast, malate diffusion and subsequent decarboxylation in HL-treated RY should be stimulated, due to an increase in the abundance of NADP-malate dehydrogenase (EC 1.1.1.82) and a decline in the content of malate. In this case, malate diffusion from MC to BSC should be systemically stimulated, thereby facilitating C4 photosynthesis of a maize leaf in heterogeneous light. While if it is systemically restricted, C4 photosynthesis would be suppressed.
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Affiliation(s)
- Xin Sun
- College of Agronomy, Sichuan Agricultural University, Chengdu, China; Key Laboratory of Crop Eco-physiology and Farming System in Southwest China, Ministry of Agriculture, Chengdu, China.
| | - Si-Rong Huang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China
| | - Jun-Bo Du
- College of Agronomy, Sichuan Agricultural University, Chengdu, China; Key Laboratory of Crop Eco-physiology and Farming System in Southwest China, Ministry of Agriculture, Chengdu, China
| | - Xiao-Chun Wang
- College of Agronomy, Sichuan Agricultural University, Chengdu, China; Key Laboratory of Crop Eco-physiology and Farming System in Southwest China, Ministry of Agriculture, Chengdu, China; Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
| | - Wen-Yu Yang
- Key Laboratory of Crop Eco-physiology and Farming System in Southwest China, Ministry of Agriculture, Chengdu, China; Sichuan Engineering Research Center for Crop Strip Intercropping System, Chengdu, China
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38
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Chatterjee J, Coe RA, Acebron K, Thakur V, Yennamalli RM, Danila F, Lin HC, Balahadia CP, Bagunu E, Padhma PPOS, Bala S, Yin X, Rizal G, Dionora J, Furbank RT, von Caemmerer S, Quick WP. A low CO2-responsive mutant of Setaria viridis reveals that reduced carbonic anhydrase limits C4 photosynthesis. J Exp Bot 2021; 72:3122-3136. [PMID: 33528493 PMCID: PMC8023212 DOI: 10.1093/jxb/erab039] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 01/30/2021] [Indexed: 06/12/2023]
Abstract
In C4 species, β-carbonic anhydrase (CA), localized to the cytosol of the mesophyll cells, accelerates the interconversion of CO2 to HCO3-, the substrate used by phosphoenolpyruvate carboxylase (PEPC) in the first step of C4 photosynthesis. Here we describe the identification and characterization of low CO2-responsive mutant 1 (lcr1) isolated from an N-nitroso-N-methylurea- (NMU) treated Setaria viridis mutant population. Forward genetic investigation revealed that the mutated gene Sevir.5G247800 of lcr1 possessed a single nucleotide transition from cytosine to thymine in a β-CA gene causing an amino acid change from leucine to phenylalanine. This resulted in severe reduction in growth and photosynthesis in the mutant. Both the CO2 compensation point and carbon isotope discrimination values of the mutant were significantly increased. Growth of the mutants was stunted when grown under ambient pCO2 but recovered at elevated pCO2. Further bioinformatics analyses revealed that the mutation has led to functional changes in one of the conserved residues of the protein, situated near the catalytic site. CA transcript accumulation in the mutant was 80% lower, CA protein accumulation 30% lower, and CA activity ~98% lower compared with the wild type. Changes in the abundance of other primary C4 pathway enzymes were observed; accumulation of PEPC protein was significantly increased and accumulation of malate dehydrogenase and malic enzyme decreased. The reduction of CA protein activity and abundance in lcr1 restricts the supply of bicarbonate to PEPC, limiting C4 photosynthesis and growth. This study establishes Sevir.5G247800 as the major CA allele in Setaria for C4 photosynthesis and provides important insights into the function of CA in C4 photosynthesis that would be required to generate a rice plant with a functional C4 biochemical pathway.
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Affiliation(s)
- Jolly Chatterjee
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Robert A Coe
- CSIRO Agriculture Flagship, Australian Plant Phenomics Facility, GPO Box 1500, Canberra, ACT 2601, Australia
| | - Kelvin Acebron
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Vivek Thakur
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
- Department of Systems & Computational Biology, School of Life Sciences, University of Hyderabad, Hyderabad-500046, India
| | - Ragothaman M Yennamalli
- Department of Bioinformatics, School of Chemical and Biotechnology, SASTRA Deemed to be University, Thanjavur, Tamilnadu-613401, India
| | - Florence Danila
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, GPO Box 1500, Canberra, ACT 2601, Australia
| | - Hsiang-Chun Lin
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | | | - Efren Bagunu
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Preiya P O S Padhma
- Department of Systems & Computational Biology, School of Life Sciences, University of Hyderabad, Hyderabad-500046, India
| | - Soumi Bala
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, GPO Box 1500, Canberra, ACT 2601, Australia
| | - Xiaojia Yin
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Govinda Rizal
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Jacqueline Dionora
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
| | - Robert T Furbank
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, GPO Box 1500, Canberra, ACT 2601, Australia
| | - Susanne von Caemmerer
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, GPO Box 1500, Canberra, ACT 2601, Australia
| | - William Paul Quick
- C4 Rice Centre, International Rice Research Institute (IRRI), Los Baños, Philippines
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
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39
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Jasieniecka-Gazarkiewicz K, Demski K, Gidda SK, Klińska S, Niedojadło J, Lager I, Carlsson AS, Minina EA, Mullen RT, Bozhkov PV, Stymne S, Banaś A. Subcellular Localization of Acyl-CoA: Lysophosphatidylethanolamine Acyltransferases (LPEATs) and the Effects of Knocking-Out and Overexpression of Their Genes on Autophagy Markers Level and Life Span of A. thaliana. Int J Mol Sci 2021; 22:ijms22063006. [PMID: 33809440 PMCID: PMC8000221 DOI: 10.3390/ijms22063006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 03/10/2021] [Accepted: 03/12/2021] [Indexed: 12/14/2022] Open
Abstract
Arabidopsis thaliana possesses two acyl-CoA:lysophosphatidylethanolamine acyltransferases, LPEAT1 and LPEAT2, which are encoded by At1g80950 and At2g45670 genes, respectively. Both single lpeat2 mutant and double lpeat1 lpeat2 mutant plants exhibit a variety of conspicuous phenotypes, including dwarfed growth. Confocal microscopic analysis of tobacco suspension-cultured cells transiently transformed with green fluorescent protein-tagged versions of LPEAT1 or LPEAT2 revealed that LPEAT1 is localized to the endoplasmic reticulum (ER), whereas LPEAT2 is localized to both Golgi and late endosomes. Considering that the primary product of the reaction catalyzed by LPEATs is phosphatidylethanolamine, which is known to be covalently conjugated with autophagy-related protein ATG8 during a key step of the formation of autophagosomes, we investigated the requirements for LPEATs to engage in autophagic activity in Arabidopsis. Knocking out of either or both LPEAT genes led to enhanced accumulation of the autophagic adaptor protein NBR1 and decreased levels of both ATG8a mRNA and total ATG8 protein. Moreover, we detected significantly fewer membrane objects in the vacuoles of lpeat1 lpeat2 double mutant mesophyll cells than in vacuoles of control plants. However, contrary to what has been reported on autophagy deficient plants, the lpeat mutants displayed a prolonged life span compared to wild type, including delayed senescence.
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Affiliation(s)
- Katarzyna Jasieniecka-Gazarkiewicz
- Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 80-307 Gdansk, Poland; (K.D.); (S.K.); (A.B.)
- Correspondence:
| | - Kamil Demski
- Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 80-307 Gdansk, Poland; (K.D.); (S.K.); (A.B.)
| | - Satinder K. Gidda
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada; (S.K.G.); (R.T.M.)
| | - Sylwia Klińska
- Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 80-307 Gdansk, Poland; (K.D.); (S.K.); (A.B.)
| | - Janusz Niedojadło
- Department of Cell Biology, Department of Cellular and Molecular Biology, Nicolaus Copernicus University, 87-100 Torun, Poland;
| | - Ida Lager
- Department of Plant Breeding, Swedish University of Agricultural Sciences, 230-53 Alnarp, Sweden; (I.L.); (A.S.C.); (S.S.)
| | - Anders S. Carlsson
- Department of Plant Breeding, Swedish University of Agricultural Sciences, 230-53 Alnarp, Sweden; (I.L.); (A.S.C.); (S.S.)
| | - Elena A. Minina
- Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 750-07 Uppsala, Sweden; (E.A.M.); (P.V.B.)
| | - Robert T. Mullen
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON N1G 2W1, Canada; (S.K.G.); (R.T.M.)
| | - Peter V. Bozhkov
- Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, 750-07 Uppsala, Sweden; (E.A.M.); (P.V.B.)
| | - Sten Stymne
- Department of Plant Breeding, Swedish University of Agricultural Sciences, 230-53 Alnarp, Sweden; (I.L.); (A.S.C.); (S.S.)
| | - Antoni Banaś
- Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 80-307 Gdansk, Poland; (K.D.); (S.K.); (A.B.)
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Bagnicka E, Kawecka-Grochocka E, Pawlina-Tyszko K, Zalewska M, Kapusta A, Kościuczuk E, Marczak S, Ząbek T. MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci. Vet Res 2021; 52:41. [PMID: 33676576 PMCID: PMC7937231 DOI: 10.1186/s13567-021-00912-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Accepted: 02/12/2021] [Indexed: 12/14/2022] Open
Abstract
MicroRNAs (miRNAs) are short, non-coding RNAs, 21-23 nucleotides in length which are known to regulate biological processes that greatly impact immune system activity. The aim of the study was to compare the miRNA expression in non-infected (H) mammary gland parenchyma samples with that of glands infected with coagulase-positive staphylococci (CoPS) or coagulase-negative staphylococci (CoNS) using next-generation sequencing. The miRNA profile of the parenchyma was found to change during mastitis, with its profile depending on the type of pathogen. Comparing the CoPS and H groups, 256 known and 260 potentially new miRNAs were identified, including 32 that were differentially expressed (p ≤ 0.05), of which 27 were upregulated and 5 downregulated. Comparing the CoNS and H groups, 242 known and 171 new unique miRNAs were identified: 10 were upregulated (p ≤ 0.05), and 2 downregulated (p ≤ 0.05). In addition, comparing CoPS with H and CoNS with H, 5 Kyoto Encyclopedia of Genes and Genomes pathways were identified; in both comparisons, differentially-expressed miRNAs were associated with the bacterial invasion of epithelial cells and focal adhesion pathways. Four gene ontology terms were identified in each comparison, with 2 being common to both immune system processes and signal transduction. Our results indicate that miRNAs, especially miR-99 and miR-182, play an essential role in the epigenetic regulation of a range of cellular processes, including immunological systems bacterial growth in dendritic cells and disease pathogenesis (miR-99), DNA repair and tumor progression (miR-182).
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Affiliation(s)
- Emilia Bagnicka
- Department of Biotechnology and Nutrigenomics, Institute of Genetics and Animal Biotechnology Polish Academy of Sciences, ul Postepu 36A, 05-552, Jastrzębiec, Poland.
| | - Ewelina Kawecka-Grochocka
- Department of Biotechnology and Nutrigenomics, Institute of Genetics and Animal Biotechnology Polish Academy of Sciences, ul Postepu 36A, 05-552, Jastrzębiec, Poland
- Department of Preclinical Sciences, Institute of Veterinary Medicine, Warsaw University of Life Sciences, ul Ciszewskiego 8, 02-786, Warsaw, Poland
| | - Klaudia Pawlina-Tyszko
- Department of Animal Molecular Biology, The National Research Institute of Animal Production, ul Krakowska 1., 32-083, Balice near Krakow, Poland
| | - Magdalena Zalewska
- Department of Biotechnology and Nutrigenomics, Institute of Genetics and Animal Biotechnology Polish Academy of Sciences, ul Postepu 36A, 05-552, Jastrzębiec, Poland
- Department of Applied Microbiology, Institute of Microbiology, Faculty of Biology, University of Warsaw, ul Miecznikowa 1, 02-096, Warsaw, Poland
| | - Aleksandra Kapusta
- Department of Biotechnology and Nutrigenomics, Institute of Genetics and Animal Biotechnology Polish Academy of Sciences, ul Postepu 36A, 05-552, Jastrzębiec, Poland
| | - Ewa Kościuczuk
- Department of Biotechnology and Nutrigenomics, Institute of Genetics and Animal Biotechnology Polish Academy of Sciences, ul Postepu 36A, 05-552, Jastrzębiec, Poland
| | - Sylwester Marczak
- Experimental Farm, Institute of Genetics and Animal Biotechnology Polish Academy of Sciences, ul Postepu 36A, 05-552, Jastrzębiec, Poland
| | - Tomasz Ząbek
- Department of Animal Molecular Biology, The National Research Institute of Animal Production, ul Krakowska 1., 32-083, Balice near Krakow, Poland
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Barbour MM, Loucos KE, Lockhart EL, Shrestha A, McCallum D, Simonin KA, Song X, Griffani DS, Farquhar GD. Can hydraulic design explain patterns of leaf water isotopic enrichment in C 3 plants? Plant Cell Environ 2021; 44:432-444. [PMID: 33175397 DOI: 10.1111/pce.13943] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 10/17/2020] [Accepted: 10/29/2020] [Indexed: 06/11/2023]
Abstract
H2 18 O enrichment develops when leaves transpire, but an accurate generalized mechanistic model has proven elusive. We hypothesized that leaf hydraulic architecture may affect the degree to which gradients in H2 18 O develop within leaves, influencing bulk leaf stable oxygen isotope enrichment (ΔL ) and the degree to which the Péclet effect is relevant in leaves. Leaf hydraulic design predicted the relevance of a Péclet effect to ΔL in 19 of the 21 species tested. Leaves with well-developed hydraulic connections between the vascular tissue and the epidermal cells through bundle sheath extensions and clear distinctions between palisade and spongy mesophyll layers (while the mesophyll is hydraulically disconnected) may have velocities of the transpiration stream such that gradients in H2 18 O develop and are expressed in the mesophyll. In contrast, in leaves where the vascular tissue is hydraulically disconnected from the epidermal layers, or where all mesophyll cells are well connected to the transpiration stream, velocities within the liquid transport pathways may be low enough that gradients in H2 18 O are very small. Prior knowledge of leaf hydraulic design allows informed selection of the appropriate ΔL modelling framework.
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Affiliation(s)
- Margaret M Barbour
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales, Australia
- The University of Waikato, School of Science, Hamilton, New Zealand
| | - Karen E Loucos
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales, Australia
| | - Erin L Lockhart
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales, Australia
| | - Arjina Shrestha
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales, Australia
| | - Daniel McCallum
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales, Australia
| | - Kevin A Simonin
- Department of Biology, San Francisco State University, San Francisco, California, USA
| | - Xin Song
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong, China
| | - Danielle S Griffani
- Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Graham D Farquhar
- Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
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de Ávila Silva L, Omena-Garcia RP, Condori-Apfata JA, Costa PMDA, Silva NM, DaMatta FM, Zsögön A, Araújo WL, de Toledo Picoli EA, Sulpice R, Nunes-Nesi A. Specific leaf area is modulated by nitrogen via changes in primary metabolism and parenchymal thickness in pepper. Planta 2021; 253:16. [PMID: 33392753 DOI: 10.1007/s00425-020-03519-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 12/02/2020] [Indexed: 05/27/2023]
Abstract
Nitrogen promotes changes in SLA through metabolism and anatomical traits in Capsicum plants. Specific leaf area (SLA) is a key trait influencing light interception and light use efficiency that often impacts plant growth and production. SLA is a key trait explaining growth variations of plant species under different environments. Both light and nitrogen (N) supply are important determinants of SLA. To better understand the effect of irradiance level and N on SLA in Capsicum chinense, we evaluated primary metabolites and morphological traits of two commercial cultivars (Biquinho and Habanero) in response to changes in both parameters. Both genotypes showed increased SLA with shading, and a decrease in SLA in response to increased N supply, however, with Habanero showing a stable SLA in the range of N deficiency to sufficient N doses. Correlation analyses indicated that decreased SLA in response to higher N supply was mediated by altered amino acids, protein, and starch levels, influencing leaf density. Moreover, in the range of moderate N deficiency to N sufficiency, both genotypes exhibited differences in SLA response, with Biquinho and Habanero displaying alterations on palisade and spongy parenchyma, respectively. Altogether, the results suggest that SLA responses to N supply are modulated by the balance between certain metabolites content and genotype-dependent changes in the parenchyma cells influencing leaf thickness and density.
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Affiliation(s)
- Lucas de Ávila Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Rebeca P Omena-Garcia
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Jorge A Condori-Apfata
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | | | - Natália Machado Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Fábio M DaMatta
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Agustin Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Edgard A de Toledo Picoli
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Ronan Sulpice
- Plant Systems Biology Lab, National University of Ireland, Ryan Institute, Galway, Ireland
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil.
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Urban A, Rogowski P, Wasilewska-Dębowska W, Romanowska E. Effect of light on the rearrangements of PSI super-and megacomplexes in the non-appressed thylakoid domains of maize mesophyll chloroplasts. Plant Sci 2020; 301:110655. [PMID: 33218624 DOI: 10.1016/j.plantsci.2020.110655] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 08/25/2020] [Accepted: 08/27/2020] [Indexed: 06/11/2023]
Abstract
We demonstrated the existence of PSI-LHCI-LHCII-Lhcb4 supercomplexes and PSI-LHCI-PSII-LHCII megacomplexes in the stroma lamellae and grana margins of maize mesophyll chloroplasts; these complexes consist of different LHCII trimers and monomer antenna proteins per PSI photocentre. These complexes are formed in both low (LL) and high (HL) light growth conditions, but with different contents. We attempted to identify the components and structure of these complexes in maize chloroplasts isolated from the leaves of low and high light-grown plants after darkness and transition to far red (FR) light of high intensity. Exposition of plants from high and low light growth condition on FR light induces different rearrangements in the composition of super- and megacomplexes. During FR light exposure, in plants from LL, the PSI-LHCI-LHCII-Lhcb4 supercomplex dissociates into free LHCII-Lhcb4 and PSI-LHCI complexes, and these complexes associate with the PSII monomer. This process occurs differently in plants from HL. Exposition to FR light causes dissociation of both PSI-LHCI-LHCII-Lhcb4 supercomplexes and PSI-PSII megacomplexes. These results suggest a different function of super- and megacomplex organization than the classic state transitions model, which assumes that the movement of LHCII trimers in the thylakoid membraneis considered as a mechanism for balancing light absorption between the two photosystems in light stress. The behavior of the complexes described in this article does not seem to be well explained by this model, i.e., it does not seem likely that the primary purpose of these megacomplexes dynamics is to balance excitation pressure. Rather, as stated in this article, it seems to indicate a role of these complexes for PSI in excitation quenching and for PSII in turnover.
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Affiliation(s)
- Aleksandra Urban
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland
| | - Paweł Rogowski
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland
| | - Wioleta Wasilewska-Dębowska
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland
| | - Elżbieta Romanowska
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland.
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Lang J, Pankowski J, Grabarz P, Pluciński B, Jedynak P. Comparing the effects of different exogenous hormone combinations on seed-derived callus induction in Nicotiana tabacum. Acta Biochim Pol 2020; 67:449-452. [PMID: 33245659 DOI: 10.18388/abp.2020_5456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Accepted: 08/25/2020] [Indexed: 11/10/2022]
Abstract
Callus from Nicotiana tabacum is used as a model in plant developmental research. We tested several phytohormone (Indoleacetic acid - IAA; 2,4-Dichlorophenoxyacetic acid - 2,4-D; kinetin - KIN; 6-Benzylaminopurine - BAP) combinations to compare different approaches to callus induction directly from the seeds of Nicotiana tabacum. Callus formation was observed up to 4 weeks after sowing and the most effective were 0.5 mg/L of 2,4-D with 0.25 mg/L of BAP and 2 mg/L 2,4-D with 1 mg/L of BAP. The calli were green, photosynthetically active and after 6 weeks of growth, no stress symptoms (estimated on the basis of fluorescence of chlorophyll a in photosystem II) were noticed.
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Affiliation(s)
- Jakub Lang
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
| | - Jędrzej Pankowski
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
| | - Piotr Grabarz
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
| | - Bartosz Pluciński
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
| | - Paweł Jedynak
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland
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Islam MS, Van Nguyen T, Sakamoto W, Takagi S. Phototropin- and photosynthesis-dependent mitochondrial positioning in Arabidopsis thaliana mesophyll cells. J Integr Plant Biol 2020; 62:1352-1371. [PMID: 31961050 DOI: 10.1111/jipb.12910] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 01/07/2020] [Indexed: 06/10/2023]
Abstract
Mitochondria are frequently observed in the vicinity of chloroplasts in photosynthesizing cells, and this association is considered necessary for their metabolic interactions. We previously reported that, in leaf palisade cells of Arabidopsis thaliana, mitochondria exhibit blue-light-dependent redistribution together with chloroplasts, which conduct accumulation and avoidance responses under the control of blue-light receptor phototropins. In this study, precise motility analyses by fluorescent microscopy revealed that the individual mitochondria in palisade cells, labeled with green fluorescent protein, exhibit typical stop-and-go movement. When exposed to blue light, the velocity of moving mitochondria increased in 30 min, whereas after 4 h, the frequency of stoppage of mitochondrial movement markedly increased. Using different mutant plants, we concluded that the presence of both phototropin1 and phototropin2 is necessary for the early acceleration of mitochondrial movement. On the contrary, the late enhancement of stoppage of mitochondrial movement occurs only in the presence of phototropin2 and only when intact photosynthesis takes place. A plasma-membrane ghost assay suggested that the stopped mitochondria are firmly adhered to chloroplasts. These results indicate that the physical interaction between mitochondria and chloroplasts is cooperatively mediated by phototropin2- and photosynthesis-dependent signals. The present study might add novel regulatory mechanism for light-dependent plant organelle interactions.
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Affiliation(s)
- Md Sayeedul Islam
- Department of Biological Sciences, Graduate School of Science, Osaka University, Machikaneyama-cho 1-1, Toyonaka, Osaka, 560-0043, Japan
| | - Toan Van Nguyen
- Department of Biological Sciences, Graduate School of Science, Osaka University, Machikaneyama-cho 1-1, Toyonaka, Osaka, 560-0043, Japan
- Agricultural Genetics Institute, National Key Laboratory for Plant Cell Biotechnology, Pham Van Dong road, Bac Tu Liem district, Ha Noi, Vietnam
| | - Wataru Sakamoto
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama, 710-0046, Japan
| | - Shingo Takagi
- Department of Biological Sciences, Graduate School of Science, Osaka University, Machikaneyama-cho 1-1, Toyonaka, Osaka, 560-0043, Japan
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Naseem M, Osmanoğlu Ö, Kaltdorf M, Alblooshi AAMA, Iqbal J, Howari FM, Srivastava M, Dandekar T. Integrated Framework of the Immune-Defense Transcriptional Signatures in the Arabidopsis Shoot Apical Meristem. Int J Mol Sci 2020; 21:ijms21165745. [PMID: 32796535 PMCID: PMC7460820 DOI: 10.3390/ijms21165745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 07/27/2020] [Accepted: 07/30/2020] [Indexed: 11/16/2022] Open
Abstract
The growing tips of plants grow sterile; therefore, disease-free plants can be generated from them. How plants safeguard growing apices from pathogen infection is still a mystery. The shoot apical meristem (SAM) is one of the three stem cells niches that give rise to the above ground plant organs. This is very well explored; however, how signaling networks orchestrate immune responses against pathogen infections in the SAM remains unclear. To reconstruct a transcriptional framework of the differentially expressed genes (DEGs) pertaining to various SAM cellular populations, we acquired large-scale transcriptome datasets from the public repository Gene Expression Omnibus (GEO). We identify here distinct sets of genes for various SAM cellular populations that are enriched in immune functions, such as immune defense, pathogen infection, biotic stress, and response to salicylic acid and jasmonic acid and their biosynthetic pathways in the SAM. We further linked those immune genes to their respective proteins and identify interactions among them by mapping a transcriptome-guided SAM-interactome. Furthermore, we compared stem-cells regulated transcriptome with innate immune responses in plants showing transcriptional separation among their DEGs in Arabidopsis. Besides unleashing a repertoire of immune-related genes in the SAM, our analysis provides a SAM-interactome that will help the community in designing functional experiments to study the specific defense dynamics of the SAM-cellular populations. Moreover, our study promotes the essence of large-scale omics data re-analysis, allowing a fresh look at the SAM-cellular transcriptome repurposing data-sets for new questions.
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Affiliation(s)
- Muhammad Naseem
- Department of Life and Environmental Sciences, College of Natural and Health Sciences, Zayed University, PO Box 144534-D, Abu Dhabi 4783, UAE; (A.A.M.A.A.); (J.I.); (F.M.H.)
- Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany; (Ö.O.); (M.K.); (M.S.)
- Correspondence: (M.N.); (T.D.)
| | - Özge Osmanoğlu
- Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany; (Ö.O.); (M.K.); (M.S.)
| | - Martin Kaltdorf
- Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany; (Ö.O.); (M.K.); (M.S.)
| | - Afnan Ali M. A. Alblooshi
- Department of Life and Environmental Sciences, College of Natural and Health Sciences, Zayed University, PO Box 144534-D, Abu Dhabi 4783, UAE; (A.A.M.A.A.); (J.I.); (F.M.H.)
| | - Jibran Iqbal
- Department of Life and Environmental Sciences, College of Natural and Health Sciences, Zayed University, PO Box 144534-D, Abu Dhabi 4783, UAE; (A.A.M.A.A.); (J.I.); (F.M.H.)
| | - Fares M. Howari
- Department of Life and Environmental Sciences, College of Natural and Health Sciences, Zayed University, PO Box 144534-D, Abu Dhabi 4783, UAE; (A.A.M.A.A.); (J.I.); (F.M.H.)
| | - Mugdha Srivastava
- Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany; (Ö.O.); (M.K.); (M.S.)
| | - Thomas Dandekar
- Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany; (Ö.O.); (M.K.); (M.S.)
- Correspondence: (M.N.); (T.D.)
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Carriquí M, Nadal M, Clemente-Moreno MJ, Gago J, Miedes E, Flexas J. Cell wall composition strongly influences mesophyll conductance in gymnosperms. Plant J 2020; 103:1372-1385. [PMID: 32390169 DOI: 10.1111/tpj.14806] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 04/22/2020] [Accepted: 04/28/2020] [Indexed: 06/11/2023]
Abstract
Cell wall thickness is widely recognized as one of the main determinants of mesophyll conductance to CO2 (gm ). However, little is known about the components that regulate effective CO2 diffusivity in the cell wall (i.e. the ratio between actual porosity and tortuosity, the other two biophysical diffusion properties of cell walls). The aim of this study was to assess, at the interspecific level, potential relationships between cell wall composition, cell wall thickness (Tcw ) and gm . Gymnosperms constitute an ideal group to deepen these relationships, as they present, on average, the thickest cell walls within spermatophytes. We characterized the foliar gas exchange, the morphoanatomical traits related with gm , the leaf fraction constituted by cell walls and three main components of primary cell walls (hemicelluloses, cellulose and pectins) in seven gymnosperm species. We found that, although the relatively low gm of gymnosperms was mainly determined by their elevated Tcw , gm was also strongly correlated with cell wall composition, which presumably sets the final effective CO2 diffusivity. The data presented here suggest that (i) differences in gm are strongly correlated to the pectins to hemicelluloses and cellulose ratio in gymnosperms, and (ii) variations in cell wall composition may modify effective CO2 diffusivity in the cell wall to compensate the negative impact of thickened walls. We speculate that higher relative pectin content allows higher gm because pectins increase cell wall hydrophilicity and CO2 molecules cross the wall dissolved in water.
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Affiliation(s)
- Marc Carriquí
- Research Group in Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears (UIB) - Agro-Environmental and Water Economics Institute (INAGEA), Palma, Illes Balears, 07122, Spain
- School of Natural Sciences, University of Tasmania (UTAS), Bag 55, Hobart, Tasmania, 7001, Australia
| | - Miquel Nadal
- Research Group in Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears (UIB) - Agro-Environmental and Water Economics Institute (INAGEA), Palma, Illes Balears, 07122, Spain
| | - María J Clemente-Moreno
- Research Group in Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears (UIB) - Agro-Environmental and Water Economics Institute (INAGEA), Palma, Illes Balears, 07122, Spain
| | - Jorge Gago
- Research Group in Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears (UIB) - Agro-Environmental and Water Economics Institute (INAGEA), Palma, Illes Balears, 07122, Spain
| | - Eva Miedes
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, Pozuelo de Alarcón, Madrid, 28223, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Madrid, 28040, Spain
| | - Jaume Flexas
- Research Group in Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears (UIB) - Agro-Environmental and Water Economics Institute (INAGEA), Palma, Illes Balears, 07122, Spain
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48
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Sonawane BV, Cousins AB. Mesophyll CO 2 conductance and leakiness are not responsive to short- and long-term soil water limitations in the C 4 plant Sorghum bicolor. Plant J 2020; 103:1590-1602. [PMID: 32438487 DOI: 10.1111/tpj.14849] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 04/30/2020] [Accepted: 05/05/2020] [Indexed: 05/13/2023]
Abstract
Breeding economically important C4 crops for enhanced whole-plant water-use efficiency (WUEplant ) is needed for sustainable agriculture. WUEplant is a complex trait and an efficient phenotyping method that reports on components of WUEplant , such as intrinsic water-use efficiency (WUEi , the rate of leaf CO2 assimilation relative to water loss via stomatal conductance), is needed. In C4 plants, theoretical models suggest that leaf carbon isotope composition (δ13 C), when the efficiency of the CO2 -concentrating mechanism (leakiness, ϕ) remains constant, can be used to screen for WUEi . The limited information about how ϕ responds to water limitations confines the application of δ13 C for WUEi screening of C4 crops. The current research aimed to test the response of ϕ to short- or long-term moderate water limitations, and the relationship of δ13 C with WUEi and WUEplant , by addressing potential mesophyll CO2 conductance (gm ) and biochemical limitations in the C4 plant Sorghum bicolor. We demonstrate that gm and ϕ are not responsive to short- or long-term water limitations. Additionally, δ13 C was not correlated with gas-exchange estimates of WUEi under short- and long-term water limitations, but showed a significant negative relationship with WUEplant . The observed association between the δ13 C and WUEplant suggests an intrinsic link of δ13 C with WUEi in this C4 plant, and can potentially be used as a screening tool for WUEplant in sorghum.
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Affiliation(s)
- Balasaheb V Sonawane
- School of Biological Sciences, Washington State University, Pullman, WA, 99164, USA
| | - Asaph B Cousins
- School of Biological Sciences, Washington State University, Pullman, WA, 99164, USA
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Alnayef M, Solis C, Shabala L, Ogura T, Chen Z, Bose J, Maathuis FJM, Venkataraman G, Tanoi K, Yu M, Zhou M, Horie T, Shabala S. Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots. Int J Mol Sci 2020; 21:E4882. [PMID: 32664377 PMCID: PMC7402344 DOI: 10.3390/ijms21144882] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 07/05/2020] [Accepted: 07/06/2020] [Indexed: 01/02/2023] Open
Abstract
In rice, the OsHKT1;5 gene has been reported to be a critical determinant of salt tolerance. This gene is harbored by the SKC1 locus, and its role was attributed to Na+ unloading from the xylem. No direct evidence, however, was provided in previous studies. Also, the reported function of SKC1 on the loading and delivery of K+ to the shoot remains to be explained. In this work, we used an electrophysiological approach to compare the kinetics of Na+ uptake by root xylem parenchyma cells using wild type (WT) and NIL(SKC1) plants. Our data showed that Na+ reabsorption was observed in WT, but not NIL(SKC1) plants, thus questioning the functional role of HKT1;5 as a transporter operating in the direct Na+ removal from the xylem. Instead, changes in the expression level of HKT1;5 altered the activity of membrane transporters involved in K+ and Ca2+ acquisition and homeostasis in the rice epidermis and stele, explaining the observed phenotype. We conclude that the role of HKT1;5 in plant salinity tolerance cannot be attributed to merely reducing Na+ concentration in the xylem sap but triggers a complex feedback regulation of activities of other transporters involved in the maintenance of plant ionic homeostasis and signaling under stress conditions.
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Affiliation(s)
- Mohammad Alnayef
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
| | - Celymar Solis
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- School of Science and Health, Western Sydney University, Penrith, NSW 2751, Australia;
| | - Lana Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| | - Takaaki Ogura
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan;
| | - Zhonghua Chen
- School of Science and Health, Western Sydney University, Penrith, NSW 2751, Australia;
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
| | - Jayakumar Bose
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
| | | | - Gayatri Venkataraman
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai 600113, India;
| | - Keitaro Tanoi
- Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan;
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
| | - Tomoaki Horie
- Division of Applied Biology, Faculty of Textile Science and Technology, Shinshu University, Nagano 386-8567, Japan;
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
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Abraham PE, Hurtado Castano N, Cowan-Turner D, Barnes J, Poudel S, Hettich R, Flütsch S, Santelia D, Borland AM. Peeling back the layers of crassulacean acid metabolism: functional differentiation between Kalanchoë fedtschenkoi epidermis and mesophyll proteomes. Plant J 2020; 103:869-888. [PMID: 32314451 DOI: 10.1111/tpj.14757] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 03/18/2020] [Accepted: 03/23/2020] [Indexed: 06/11/2023]
Abstract
Crassulacean acid metabolism (CAM) is a specialized mode of photosynthesis that offers the potential to engineer improved water-use efficiency (WUE) and drought resilience in C3 plants while sustaining productivity in the hotter and drier climates that are predicted for much of the world. CAM species show an inverted pattern of stomatal opening and closing across the diel cycle, which conserves water and provides a means of maintaining growth in hot, water-limited environments. Recent genome sequencing of the constitutive model CAM species Kalanchoë fedtschenkoi provides a platform for elucidating the ensemble of proteins that link photosynthetic metabolism with stomatal movement, and that protect CAM plants from harsh environmental conditions. We describe a large-scale proteomics analysis to characterize and compare proteins, as well as diel changes in their abundance in guard cell-enriched epidermis and mesophyll cells from leaves of K. fedtschenkoi. Proteins implicated in processes that encompass respiration, the transport of water and CO2 , stomatal regulation, and CAM biochemistry are highlighted and discussed. Diel rescheduling of guard cell starch turnover in K. fedtschenkoi compared with that observed in Arabidopsis is reported and tissue-specific localization in the epidermis and mesophyll of isozymes implicated in starch and malate turnover are discussed in line with the contrasting roles for these metabolites within the CAM mesophyll and stomatal complex. These data reveal the proteins and the biological processes enriched in each layer and provide key information for studies aiming to adapt plants to hot and dry environments by modifying leaf physiology for improved plant sustainability.
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Affiliation(s)
- Paul E Abraham
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Natalia Hurtado Castano
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, UK
| | - Daniel Cowan-Turner
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - Jeremy Barnes
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - Suresh Poudel
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
- Department of Genome Science and Technology, University of Tennessee, Knoxville, TN, 37996, USA
| | - Robert Hettich
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | | | - Diana Santelia
- Institute of Integrative Biology, ETH, Zürich, Switzerland
| | - Anne M Borland
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
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