51
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Yayci A, Baraibar ÁG, Krewing M, Fueyo EF, Hollmann F, Alcalde M, Kourist R, Bandow JE. Plasma-Driven in Situ Production of Hydrogen Peroxide for Biocatalysis. CHEMSUSCHEM 2020; 13:2072-2079. [PMID: 32026604 PMCID: PMC7216967 DOI: 10.1002/cssc.201903438] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 02/04/2020] [Indexed: 06/10/2023]
Abstract
Peroxidases and peroxygenases are promising classes of enzymes for biocatalysis because of their ability to carry out one-electron oxidation reactions and stereoselective oxyfunctionalizations. However, industrial application is limited, as the major drawback is the sensitivity toward the required peroxide substrates. Herein, we report a novel biocatalysis approach to circumvent this shortcoming: in situ production of H2 O2 by dielectric barrier discharge plasma. The discharge plasma can be controlled to produce hydrogen peroxide at desired rates, yielding desired concentrations. Using horseradish peroxidase, it is demonstrated that hydrogen peroxide produced by plasma treatment can drive the enzymatic oxidation of model substrates. Fungal peroxygenase is then employed to convert ethylbenzene to (R)-1-phenylethanol with an ee of >96 % using plasma-generated hydrogen peroxide. As direct treatment of the reaction solution with plasma results in reduced enzyme activity, the use of plasma-treated liquid and protection strategies are investigated to increase total turnover. Technical plasmas present a noninvasive means to drive peroxide-based biotransformations.
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Affiliation(s)
- Abdulkadir Yayci
- Applied MicrobiologyFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstraße 15044780BochumGermany
| | - Álvaro Gómez Baraibar
- Microbial BiotechnologyFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstraße 15044780BochumGermany
| | - Marco Krewing
- Applied MicrobiologyFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstraße 15044780BochumGermany
| | - Elena Fernandez Fueyo
- Department of BiotechnologyDelft University of TechnologyVan der Maasweg 92629HZDelftThe Netherlands
| | - Frank Hollmann
- Department of BiotechnologyDelft University of TechnologyVan der Maasweg 92629HZDelftThe Netherlands
| | - Miguel Alcalde
- Department of BiocatalysisInstitute of Catalysis and Petrochemistry (CSIC)Campus Cantoblanco28049MadridSpain
| | - Robert Kourist
- Microbial BiotechnologyFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstraße 15044780BochumGermany
- current address: Institute for Molecular BiotechnologyGraz University of TechnologyPetersgasse 14GrazAustria
| | - Julia E. Bandow
- Applied MicrobiologyFaculty of Biology and BiotechnologyRuhr University BochumUniversitätsstraße 15044780BochumGermany
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52
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Willot SJ, Hoang MD, Paul CE, Alcalde M, Arends IWCE, Bommarius AS, Bommarius B, Hollmann F. FOx News: Towards Methanol‐driven Biocatalytic Oxyfunctionalisation Reactions. ChemCatChem 2020. [DOI: 10.1002/cctc.202000197] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sébastien J.‐P. Willot
- Department of Biotechnology Delft University of Technology van der Maasweg 9 2629 HZ Delft (The Netherlands
| | - Manh Dat Hoang
- Institute of Biochemical Engineering Technical University of Munich Boltzmannstr. 15 85748 Garching Germany
| | - Caroline E. Paul
- Department of Biotechnology Delft University of Technology van der Maasweg 9 2629 HZ Delft (The Netherlands
| | - Miguel Alcalde
- Department of Biocatalysis Institute of Catalysis, CSIC Madrid Spain
| | | | - Andreas S. Bommarius
- School of Chemical and Biomolecular Engineering Georgia Institute of Technology 950 Atlantic Drive, N.W. Atlanta GA 30332 USA
| | - Bettina Bommarius
- School of Chemical and Biomolecular Engineering Georgia Institute of Technology 950 Atlantic Drive, N.W. Atlanta GA 30332 USA
| | - Frank Hollmann
- Department of Biotechnology Delft University of Technology van der Maasweg 9 2629 HZ Delft (The Netherlands
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53
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Fungal Peroxygenases: A Phylogenetically Old Superfamily of Heme Enzymes with Promiscuity for Oxygen Transfer Reactions. ACTA ACUST UNITED AC 2020. [DOI: 10.1007/978-3-030-29541-7_14] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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54
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Bormann S, van Schie MMCH, De Almeida TP, Zhang W, Stöckl M, Ulber R, Hollmann F, Holtmann D. H 2 O 2 Production at Low Overpotentials for Electroenzymatic Halogenation Reactions. CHEMSUSCHEM 2019; 12:4759-4763. [PMID: 31557410 PMCID: PMC6899481 DOI: 10.1002/cssc.201902326] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 09/26/2019] [Indexed: 06/10/2023]
Abstract
Various enzymes utilize hydrogen peroxide as an oxidant. Such "peroxizymes" are potentially very attractive catalysts for a broad range of oxidation reactions. Most peroxizymes, however, are inactivated by an excess of H2 O2 . The electrochemical reduction of oxygen can be used as an in situ generation method for hydrogen peroxide to drive the peroxizymes at high operational stabilities. Using conventional electrode materials, however, also necessitates significant overpotentials, thereby reducing the energy efficiency of these systems. This study concerns a method to coat a gas-diffusion electrode with oxidized carbon nanotubes (oCNTs), thereby greatly reducing the overpotential needed to perform an electroenzymatic halogenation reaction. In comparison to the unmodified electrode, with the oCNTs-modified electrode the overpotential can be reduced by approximately 100 mV at comparable product formation rates.
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Affiliation(s)
- Sebastian Bormann
- Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Morten M. C. H. van Schie
- Department of Biotechnology, Biocatalysis GroupTechnical University DelftVan der Maasweg 92629HZDelftThe Netherlands
| | - Tiago Pedroso De Almeida
- Department of Biotechnology, Biocatalysis GroupTechnical University DelftVan der Maasweg 92629HZDelftThe Netherlands
| | - Wuyuan Zhang
- Department of Biotechnology, Biocatalysis GroupTechnical University DelftVan der Maasweg 92629HZDelftThe Netherlands
| | - Markus Stöckl
- ElectrochemistryDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
| | - Roland Ulber
- Bioprocess EngineeringUniversity of KaiserslauternGottlieb-Daimler-Str. 4967663KaiserslauternGermany
| | - Frank Hollmann
- Department of Biotechnology, Biocatalysis GroupTechnical University DelftVan der Maasweg 92629HZDelftThe Netherlands
| | - Dirk Holtmann
- Industrial BiotechnologyDECHEMA Research InstituteTheodor-Heuss-Allee 2560486Frankfurt am MainGermany
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55
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Choi DS, Lee H, Tieves F, Lee YW, Son EJ, Zhang W, Shin B, Hollmann F, Park CB. Bias-Free In Situ H2O2 Generation in a Photovoltaic-Photoelectrochemical Tandem Cell for Biocatalytic Oxyfunctionalization. ACS Catal 2019. [DOI: 10.1021/acscatal.9b04454] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Da Som Choi
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, 335 Science Road, Daejeon 34141, Republic of Korea
| | - Hojin Lee
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, 335 Science Road, Daejeon 34141, Republic of Korea
| | - Florian Tieves
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Yang Woo Lee
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, 335 Science Road, Daejeon 34141, Republic of Korea
| | - Eun Jin Son
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, 335 Science Road, Daejeon 34141, Republic of Korea
| | - Wuyuan Zhang
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Byungha Shin
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, 335 Science Road, Daejeon 34141, Republic of Korea
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Chan Beum Park
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, 335 Science Road, Daejeon 34141, Republic of Korea
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56
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Schmitz LM, Rosenthal K, Lütz S. Recent advances in heme biocatalysis engineering. Biotechnol Bioeng 2019; 116:3469-3475. [PMID: 31483477 DOI: 10.1002/bit.27156] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 07/17/2019] [Accepted: 08/29/2019] [Indexed: 01/13/2023]
Abstract
Heme enzymes have the potential to be widely used as biocatalysts due to their capability to perform a vast variety of oxidation reactions. In spite of their versatility, the application of heme enzymes was long time-limited for the industry due to their low activity and stability in large scale processes. The identification of novel natural biocatalysts and recent advances in protein engineering have led to new reactions with a high application potential. The latest creation of a serine-ligated mutant of BM3 showed an efficient transfer of reactive carbenes into C═C bonds of olefins reaching total turnover numbers of more than 60,000 and product titers of up to 27 g/L-1 . This prominent example shows that heme enzymes are becoming competitive to chemical syntheses while being already advantageous in terms of high yield, regioselectivity, stereoselectivity and environmentally friendly reaction conditions. Advances in reactor concepts and the influencing parameters on reaction performance are also under investigation resulting in improved productivities and increased stability of the heme biocatalytic systems. In this mini review, we briefly present the latest advancements in the field of heme enzymes towards increased reaction scope and applicability.
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Affiliation(s)
- Lisa Marie Schmitz
- Department of Biochemical and Chemical Engineering, TU Dortmund University, Dortmund, Germany
| | - Katrin Rosenthal
- Department of Biochemical and Chemical Engineering, TU Dortmund University, Dortmund, Germany
| | - Stephan Lütz
- Department of Biochemical and Chemical Engineering, TU Dortmund University, Dortmund, Germany
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57
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Rauch MCR, Tieves F, Paul CE, Arends IWCE, Alcalde M, Hollmann F. Peroxygenase-Catalysed Epoxidation of Styrene Derivatives in Neat Reaction Media. ChemCatChem 2019; 11:4519-4523. [PMID: 31762830 PMCID: PMC6853256 DOI: 10.1002/cctc.201901142] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 07/18/2019] [Indexed: 11/14/2022]
Abstract
Biocatalytic oxyfunctionalisation reactions are traditionally conducted in aqueous media limiting their production yield. Here we report the application of a peroxygenase in neat reaction conditions reaching product concentrations of up to 360 mM.
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Affiliation(s)
- Marine C. R. Rauch
- Department of BiotechnologyDelft University of TechnologyDelft2629HZThe Netherlands
| | - Florian Tieves
- Department of BiotechnologyDelft University of TechnologyDelft2629HZThe Netherlands
| | - Caroline E. Paul
- Department of BiotechnologyDelft University of TechnologyDelft2629HZThe Netherlands
| | | | - Miguel Alcalde
- Department of BiocatalysisInstitute of Catalysis, CSIC28049MadridSpain
| | - Frank Hollmann
- Department of BiotechnologyDelft University of TechnologyDelft2629HZThe Netherlands
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58
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Freakley SJ, Kochius S, van Marwijk J, Fenner C, Lewis RJ, Baldenius K, Marais SS, Opperman DJ, Harrison STL, Alcalde M, Smit MS, Hutchings GJ. A chemo-enzymatic oxidation cascade to activate C-H bonds with in situ generated H 2O 2. Nat Commun 2019; 10:4178. [PMID: 31519878 PMCID: PMC6744418 DOI: 10.1038/s41467-019-12120-w] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 08/16/2019] [Indexed: 11/09/2022] Open
Abstract
Continuous low-level supply or in situ generation of hydrogen peroxide (H2O2) is essential for the stability of unspecific peroxygenases, which are deemed ideal biocatalysts for the selective activation of C-H bonds. To envisage potential large scale applications of combined catalytic systems the reactions need to be simple, efficient and produce minimal by-products. We show that gold-palladium nanoparticles supported on TiO2 or carbon have sufficient activity at ambient temperature and pressure to generate H2O2 from H2 and O2 and supply the oxidant to the engineered unspecific heme-thiolate peroxygenase PaDa-I. This tandem catalyst combination facilitates efficient oxidation of a range of C-H bonds to hydroxylated products in one reaction vessel with only water as a by-product under conditions that could be easily scaled.
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Affiliation(s)
- Simon J Freakley
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff, CF10 3AT, UK
- Department of Chemistry, University of Bath, Claverton Down, Bath, BA2 7AY, UK
| | - Svenja Kochius
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa
| | - Jacqueline van Marwijk
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa
| | - Caryn Fenner
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa
- Centre for Bioprocess Engineering Research (CeBER), Department of Chemical Engineering, University of Cape Town, Private Bag X3, Rondebosch, 7701, Cape Town, South Africa
| | - Richard J Lewis
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff, CF10 3AT, UK
| | - Kai Baldenius
- BASF SE, RBW/OS - A 30, Carl-Bosch-Strasse 38, 67056, Ludwigshafen am Rhein, Germany
| | - Sarel S Marais
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa
| | - Diederik J Opperman
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa
| | - Susan T L Harrison
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa
- Centre for Bioprocess Engineering Research (CeBER), Department of Chemical Engineering, University of Cape Town, Private Bag X3, Rondebosch, 7701, Cape Town, South Africa
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049, Madrid, Spain
| | - Martha S Smit
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa.
- South African DST-NRF Centre of Excellence in Catalysis, C*Change, University of Cape Town, Private Bag, Rondebosch, 7701, Cape Town, South Africa.
| | - Graham J Hutchings
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff, CF10 3AT, UK.
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59
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van Schie MMCH, Zhang W, Tieves F, Choi DS, Park CB, Burek BO, Bloh JZ, Arends IWCE, Paul CE, Alcalde M, Hollmann F. Cascading g-C3N4 and Peroxygenases for Selective Oxyfunctionalization Reactions. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01341] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Morten M. C. H. van Schie
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Wuyuan Zhang
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Florian Tieves
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Da Som Choi
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon 305-701, Republic of Korea
| | - Chan Beum Park
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon 305-701, Republic of Korea
| | - Bastien O. Burek
- DECHEMA Forschungsinstitut, Theodor-Heuss-Allee 25, 60486 Frankfurt am Main, Germany
| | - Jonathan Z. Bloh
- DECHEMA Forschungsinstitut, Theodor-Heuss-Allee 25, 60486 Frankfurt am Main, Germany
| | - Isabel W. C. E. Arends
- University of Utrecht, Faculty of Science, Budapestlaan 6, 3584 CD Utrecht, The Netherlands
| | - Caroline E. Paul
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049 Madrid, Spain
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
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60
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Kim J, Lee SH, Tieves F, Paul CE, Hollmann F, Park CB. Nicotinamide adenine dinucleotide as a photocatalyst. SCIENCE ADVANCES 2019; 5:eaax0501. [PMID: 31334353 PMCID: PMC6641943 DOI: 10.1126/sciadv.aax0501] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 06/14/2019] [Indexed: 05/15/2023]
Abstract
Nicotinamide adenine dinucleotide (NAD+) is a key redox compound in all living cells responsible for energy transduction, genomic integrity, life-span extension, and neuromodulation. Here, we report a new function of NAD+ as a molecular photocatalyst in addition to the biological roles. Our spectroscopic and electrochemical analyses reveal light absorption and electronic properties of two π-conjugated systems of NAD+. Furthermore, NAD+ exhibits a robust photostability under UV-Vis-NIR irradiation. We demonstrate photocatalytic redox reactions driven by NAD+, such as O2 reduction, H2O oxidation, and the formation of metallic nanoparticles. Beyond the traditional role of NAD+ as a cofactor in redox biocatalysis, NAD+ executes direct photoactivation of oxidoreductases through the reduction of enzyme prosthetic groups. Consequently, the synergetic integration of biocatalysis and photocatalysis using NAD+ enables solar-to-chemical conversion with the highest-ever-recorded turnover frequency and total turnover number of 1263.4 hour-1 and 1692.3, respectively, for light-driven biocatalytic trans-hydrogenation.
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Affiliation(s)
- Jinhyun Kim
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon 305-701, Republic of Korea
| | - Sahng Ha Lee
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon 305-701, Republic of Korea
| | - Florian Tieves
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, Netherlands
| | - Caroline E. Paul
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, Netherlands
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, Netherlands
| | - Chan Beum Park
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon 305-701, Republic of Korea
- Corresponding author.
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61
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Pesic M, Willot SJP, Fernández-Fueyo E, Tieves F, Alcalde M, Hollmann F. Multienzymatic in situ hydrogen peroxide generation cascade for peroxygenase-catalysed oxyfunctionalisation reactions. ACTA ACUST UNITED AC 2019; 74:101-104. [PMID: 30379645 DOI: 10.1515/znc-2018-0137] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 10/04/2018] [Indexed: 01/02/2023]
Abstract
There is an increasing interest in the application of peroxygenases in biocatalysis, because of their ability to catalyse the oxyfunctionalisation reaction in a stereoselective fashion and with high catalytic efficiencies, while using hydrogen peroxide or organic peroxides as oxidant. However, enzymes belonging to this class exhibit a very low stability in the presence of peroxides. With the aim of bypassing this fast and irreversible inactivation, we study the use of a gradual supply of hydrogen peroxide to maintain its concentration at stoichiometric levels. In this contribution, we report a multienzymatic cascade for in situ generation of hydrogen peroxide. In the first step, in the presence of NAD+ cofactor, formate dehydrogenase from Candida boidinii (FDH) catalysed the oxidation of formate yielding CO2. Reduced NADH was reoxidised by the reduction of the flavin mononucleotide cofactor bound to an old yellow enzyme homologue from Bacillus subtilis (YqjM), which subsequently reacts with molecular oxygen yielding hydrogen peroxide. Finally, this system was coupled to the hydroxylation of ethylbenzene reaction catalysed by an evolved peroxygenase from Agrocybe aegerita (rAaeUPO). Additionally, we studied the influence of different reaction parameters on the performance of the cascade with the aim of improving the turnover of the hydroxylation reaction.
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Affiliation(s)
- Milja Pesic
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Sébastien Jean-Paul Willot
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Elena Fernández-Fueyo
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Florian Tieves
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049 Madrid, Spain
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands
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62
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Burek BO, de Boer SR, Tieves F, Zhang W, van Schie M, Bormann S, Alcalde M, Holtmann D, Hollmann F, Bahnemann DW, Bloh JZ. Photoenzymatic Hydroxylation of Ethylbenzene Catalyzed by Unspecific Peroxygenase: Origin of Enzyme Inactivation and the Impact of Light Intensity and Temperature. ChemCatChem 2019. [DOI: 10.1002/cctc.201900610] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Bastien O. Burek
- Chemical Technology Group and Industrial Biotechnology GroupDECHEMA Forschungsinstitut Theodor-Heuss-Allee 25 60486 Frankfurt am Main Germany
- Institut für Technische ChemieLeibniz Universität Hannover Callinstraße 3 30167 Hannover Germany
| | - Sabrina R. de Boer
- Chemical Technology Group and Industrial Biotechnology GroupDECHEMA Forschungsinstitut Theodor-Heuss-Allee 25 60486 Frankfurt am Main Germany
| | - Florian Tieves
- Department of BiotechnologyDelft University of Technology Van der Maasweg 9 2629HZ Delft (The Netherlands
| | - Wuyuan Zhang
- Department of BiotechnologyDelft University of Technology Van der Maasweg 9 2629HZ Delft (The Netherlands
| | - Morten van Schie
- Department of BiotechnologyDelft University of Technology Van der Maasweg 9 2629HZ Delft (The Netherlands
| | - Sebastian Bormann
- Chemical Technology Group and Industrial Biotechnology GroupDECHEMA Forschungsinstitut Theodor-Heuss-Allee 25 60486 Frankfurt am Main Germany
| | - Miguel Alcalde
- Department of BiocatalysisInstitute of Catalysis, CSIC 28049 Madrid Spain
| | - Dirk Holtmann
- Chemical Technology Group and Industrial Biotechnology GroupDECHEMA Forschungsinstitut Theodor-Heuss-Allee 25 60486 Frankfurt am Main Germany
| | - Frank Hollmann
- Department of BiotechnologyDelft University of Technology Van der Maasweg 9 2629HZ Delft (The Netherlands
| | - Detlef W. Bahnemann
- Institut für Technische ChemieLeibniz Universität Hannover Callinstraße 3 30167 Hannover Germany
- Laboratory “Photoactive Nanocomposite Materials”Saint-Petersburg State University Ulyanovskaya str. 1, Peterhof Saint-Petersburg 198504 Russia
| | - Jonathan Z. Bloh
- Chemical Technology Group and Industrial Biotechnology GroupDECHEMA Forschungsinstitut Theodor-Heuss-Allee 25 60486 Frankfurt am Main Germany
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63
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Tieves F, Willot SJ, van Schie MMCH, Rauch MCR, Younes SHH, Zhang W, Dong J, Gomez de Santos P, Robbins JM, Bommarius B, Alcalde M, Bommarius AS, Hollmann F. Formate Oxidase (FOx) from Aspergillus oryzae: One Catalyst Enables Diverse H 2 O 2 -Dependent Biocatalytic Oxidation Reactions. Angew Chem Int Ed Engl 2019; 58:7873-7877. [PMID: 30945422 PMCID: PMC6563469 DOI: 10.1002/anie.201902380] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Indexed: 12/29/2022]
Abstract
An increasing number of biocatalytic oxidation reactions rely on H2 O2 as a clean oxidant. The poor robustness of most enzymes towards H2 O2 , however, necessitates more efficient systems for in situ H2 O2 generation. In analogy to the well-known formate dehydrogenase to promote NADH-dependent reactions, we here propose employing formate oxidase (FOx) to promote H2 O2 -dependent enzymatic oxidation reactions. Even under non-optimised conditions, high turnover numbers for coupled FOx/peroxygenase catalysis were achieved.
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Affiliation(s)
- Florian Tieves
- Department of BiotechnologyUniversity of Technology Delftvan der Massweg 92629HZDelftThe Netherlands
| | | | | | | | - Sabry Hamdy Hamed Younes
- Department of BiotechnologyUniversity of Technology Delftvan der Massweg 92629HZDelftThe Netherlands
- Chemistry DepartmentFaculty of ScienceSohag UniversitySohag82524Egypt
| | - Wuyuan Zhang
- Department of BiotechnologyUniversity of Technology Delftvan der Massweg 92629HZDelftThe Netherlands
| | - JiaJia Dong
- Department of BiotechnologyUniversity of Technology Delftvan der Massweg 92629HZDelftThe Netherlands
| | | | - John Mick Robbins
- School of Chemical and Biomolecular EngineeringGeorgia Institute of Technology311 Ferst Drive, N.W.AtlantaGA30332USA
| | - Bettina Bommarius
- School of Chemical and Biomolecular EngineeringGeorgia Institute of Technology311 Ferst Drive, N.W.AtlantaGA30332USA
| | - Miguel Alcalde
- Department of BiocatalysisInstitute of CatalysisCSIC28049MadridSpain
| | - Andreas Sebastian Bommarius
- School of Chemical and Biomolecular EngineeringGeorgia Institute of Technology311 Ferst Drive, N.W.AtlantaGA30332USA
- School of Chemistry and BiochemistryGeorgia Institute of Technology901 Atlantic Drive, N.W.AtlantaGA30332USA
| | - Frank Hollmann
- Department of BiotechnologyUniversity of Technology Delftvan der Massweg 92629HZDelftThe Netherlands
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Tieves F, Willot SJ, van Schie MMCH, Rauch MCR, Younes SHH, Zhang W, Dong J, Gomez de Santos P, Robbins JM, Bommarius B, Alcalde M, Bommarius AS, Hollmann F. Formiat‐Oxidase (FOx) aus
Aspergillus oryzae
: ein Katalysator für verschiedene H
2
O
2
‐abhängige biokatalytische Oxidationen. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902380] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Florian Tieves
- Department of BiotechnologyUniversity of Technology Delft van der Massweg 9 2629HZ Delft Niederlande
| | | | | | | | - Sabry Hamdy Hamed Younes
- Department of BiotechnologyUniversity of Technology Delft van der Massweg 9 2629HZ Delft Niederlande
- Chemistry DepartmentFaculty of ScienceSohag University Sohag 82524 Ägypten
| | - Wuyuan Zhang
- Department of BiotechnologyUniversity of Technology Delft van der Massweg 9 2629HZ Delft Niederlande
| | - JiaJia Dong
- Department of BiotechnologyUniversity of Technology Delft van der Massweg 9 2629HZ Delft Niederlande
| | | | - John Mick Robbins
- School of Chemical and Biomolecular EngineeringGeorgia Institute of Technology 311 Ferst Drive, N.W. Atlanta GA 30332 USA
| | - Bettina Bommarius
- School of Chemical and Biomolecular EngineeringGeorgia Institute of Technology 311 Ferst Drive, N.W. Atlanta GA 30332 USA
| | - Miguel Alcalde
- Department of BiocatalysisInstitute of CatalysisCSIC 28049 Madrid Spanien
| | - Andreas Sebastian Bommarius
- School of Chemical and Biomolecular EngineeringGeorgia Institute of Technology 311 Ferst Drive, N.W. Atlanta GA 30332 USA
- School of Chemistry and BiochemistryGeorgia Institute of Technology 901 Atlantic Drive, N.W. Atlanta GA 30332 USA
| | - Frank Hollmann
- Department of BiotechnologyUniversity of Technology Delft van der Massweg 9 2629HZ Delft Niederlande
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65
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Tischler D, van Berkel WJH, Fraaije MW. Editorial: Actinobacteria, a Source of Biocatalytic Tools. Front Microbiol 2019; 10:800. [PMID: 31040839 PMCID: PMC6477052 DOI: 10.3389/fmicb.2019.00800] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Accepted: 03/28/2019] [Indexed: 11/28/2022] Open
Affiliation(s)
- Dirk Tischler
- Microbial Biotechnology, Biology and Biotechnology, Ruhr University Bochum, Bochum, Germany
| | - Willem J H van Berkel
- Laboratory of Biochemistry, Wageningen University & Research, Wageningen, Netherlands
| | - Marco W Fraaije
- Molecular Enzymology, University of Groningen, Groningen, Netherlands
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66
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67
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Willot SJP, Fernández-Fueyo E, Tieves F, Pesic M, Alcalde M, Arends IW, Park CB, Hollmann F. Expanding the Spectrum of Light-Driven Peroxygenase Reactions. ACS Catal 2019; 9:890-894. [PMID: 30775065 PMCID: PMC6369655 DOI: 10.1021/acscatal.8b03752] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 12/10/2018] [Indexed: 12/02/2022]
Abstract
![]()
Peroxygenases
require a controlled supply of H2O2 to operate
efficiently. Here, we propose a photocatalytic
system for the reductive activation of ambient O2 to produce
H2O2 which uses the energy provided by visible
light more efficiently based on the combination of wavelength-complementary
photosensitizers. This approach was coupled to an enzymatic system
to make formate available as a sacrificial electron donor. The scope
and current limitations of this approach are reported and discussed.
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Affiliation(s)
- Sébastien J.-P. Willot
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Elena Fernández-Fueyo
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Florian Tieves
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Milja Pesic
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049 Madrid, Spain
| | | | - Chan Beum Park
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon 305-701, Republic of Korea
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Delft, The Netherlands
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68
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Dennig A, Blaschke F, Gandomkar S, Tassano E, Nidetzky B. Preparative Asymmetric Synthesis of Canonical and Non‐canonical α‐amino Acids Through Formal Enantioselective Biocatalytic Amination of Carboxylic Acids. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201801377] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Alexander Dennig
- Institute of Biotechnology and Biochemical Engineering, Graz University of TechnologyNAWI Graz Petersgasse 12 8010 Graz Austria
- Austrian Centre of Industrial Biotechnology (acib) Petersgasse 14 8010 Graz Austria
| | - Fabio Blaschke
- Institute of Biotechnology and Biochemical Engineering, Graz University of TechnologyNAWI Graz Petersgasse 12 8010 Graz Austria
| | - Somayyeh Gandomkar
- Institute of Biotechnology and Biochemical Engineering, Graz University of TechnologyNAWI Graz Petersgasse 12 8010 Graz Austria
| | - Erika Tassano
- Department of ChemistryUniversity of Graz Heinrichstrasse 28 8010 Graz Austria
| | - Bernd Nidetzky
- Institute of Biotechnology and Biochemical Engineering, Graz University of TechnologyNAWI Graz Petersgasse 12 8010 Graz Austria
- Austrian Centre of Industrial Biotechnology (acib) Petersgasse 14 8010 Graz Austria
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69
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Ramirez-Escudero M, Molina-Espeja P, Gomez de Santos P, Hofrichter M, Sanz-Aparicio J, Alcalde M. Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. ACS Chem Biol 2018; 13:3259-3268. [PMID: 30376293 DOI: 10.1021/acschembio.8b00500] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Because of their minimal requirements, substrate promiscuity and product selectivity, fungal peroxygenases are now considered to be the jewel in the crown of C-H oxyfunctionalization biocatalysts. In this work, the crystal structure of the first laboratory-evolved peroxygenase expressed by yeast was determined at a resolution of 1.5 Å. Notable differences were detected between the evolved and native peroxygenase from Agrocybe aegerita, including the presence of a full N-terminus and a broader heme access channel due to the mutations that accumulated through directed evolution. Further mutagenesis and soaking experiments with a palette of peroxygenative and peroxidative substrates suggested dynamic trafficking through the heme channel as the main driving force for the exceptional substrate promiscuity of peroxygenase. Accordingly, this study provides the first structural evidence at an atomic level regarding the mode of substrate binding for this versatile biocatalyst, which is discussed within a biological and chemical context.
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Affiliation(s)
- Mercedes Ramirez-Escudero
- Department of Crystallography & Structural Biology, Institute of Physical Chemistry “Rocasolano”, CSIC, 28006 Madrid, Spain
| | | | | | - Martin Hofrichter
- Department of Bio- and Environmental Sciences, TU Dresden, International Institute Zittau, Mark 23, 02763 Zittau, Germany
| | - Julia Sanz-Aparicio
- Department of Crystallography & Structural Biology, Institute of Physical Chemistry “Rocasolano”, CSIC, 28006 Madrid, Spain
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049 Madrid, Spain
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70
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Holtmann D, Harnisch F. Electrification of Biotechnology: Quo Vadis? ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2018; 167:395-411. [PMID: 30267102 DOI: 10.1007/10_2018_75] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Electrobiotechnology has come a long way and has gained much interest among researchers all over the world. In the previous chapters of this book, an abundance of successful developments of lab-scale electrobiosynthesis and their underlying fundamentals are described. Thereby the individual needs and lines of research are highlighted. In this final chapter we will try to shed light on the overall performance of electrobiosynthetic processes with regard to their technological maturity, as well as the potential ecological and economic incentives for their industrial implementation.The evaluation of technical maturity, in particular, clearly demonstrates that electrobiosynthesis is still in its infancy. Bridging the "valley of death" between promising lab-scale results and first industrial applications as a market opener can only be achieved by the joint efforts of researchers from different disciplines in academia and industry, as well as by public funding and venture capital.Unfortunately, among other factors, the low degree of technical maturity hampers ecological evaluation, which so far has been limited to a small number of complete life cycle assessments. Therefore, we suggest using simplified evaluation tools (e.g., the environmental E-factor) to at least acquire clues about different parameters that influence the ecological impact. Ultimately, money makes the world go round and, hence, economic aspects will determine whether or not electrobiotechnological processes are implemented in industry. The existing examples show that different production routes based on electrobiosynthesis can become economically feasible.
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Affiliation(s)
- Dirk Holtmann
- DECHEMA-Forschungsinstitut, Industrial Biotechnology, Frankfurt am Main, Germany.
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research, Leipzig, Germany.
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71
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Robbins JM, Geng J, Barry BA, Gadda G, Bommarius AS. Photoirradiation Generates an Ultrastable 8-Formyl FAD Semiquinone Radical with Unusual Properties in Formate Oxidase. Biochemistry 2018; 57:5818-5826. [PMID: 30226367 DOI: 10.1021/acs.biochem.8b00571] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Formate oxidase (FOX) was previously shown to contain a noncovalently bound 8-formyl FAD (8-fFAD) cofactor. However, both the absorption spectra and the kinetic parameters previously reported for FOX are inconsistent with more recent reports. The ultraviolet-visible (UV-vis) absorption spectrum reported in early studies closely resembles the spectra observed for protein-bound 8-formyl flavin semiquinone species, thus suggesting FOX may be photosensitive. Therefore, the properties of dark and light-exposed FOX were investigated using steady-state kinetics and site-directed mutagenesis analysis along with inductively coupled plasma optical emission spectroscopy, UV-vis absorption spectroscopy, circular dichroism spectroscopy, liquid chromatography and mass spectrometry, and electron paramagnetic resonance (EPR) spectroscopy. Surprisingly, these experimental results demonstrate that FOX is deactivated in the presence of light through generation of an oxygen stable, anionic (red) 8-fFAD semiquinone radical capable of persisting either in an aerobic environment for multiple weeks or in the presence of a strong reducing agent like sodium dithionite. Herein, we study the photoinduced formation of the 8-fFAD semiquinone radical in FOX and report the first EPR spectrum of this radical species. The stability of the 8-fFAD semiquinone radical suggests FOX to be a model enzyme for probing the structural and mechanistic features involved in stabilizing flavin semiquinone radicals. It is likely that the photoinduced formation of a stable 8-fFAD semiquinone radical is a defining characteristic of 8-formyl flavin-dependent enzymes. Additionally, a better understanding of the radical stabilization process may yield a FOX enzyme with more robust activity and broader industrial usefulness.
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Affiliation(s)
- John M Robbins
- School of Chemical and Biomolecular Engineering , Georgia Institute of Technology , Atlanta , Georgia 30332-0100 , United States.,Engineered Biosystems Building (EBB) , Georgia Institute of Technology , Atlanta , Georgia 30332-2000 , United States
| | - Jiafeng Geng
- School of Chemistry and Biochemistry, Parker H. Petit Institute of Bioengineering and Bioscience , Georgia Institute of Technology , Atlanta , Georgia 30332-0363 , United States
| | - Bridgette A Barry
- School of Chemistry and Biochemistry, Parker H. Petit Institute of Bioengineering and Bioscience , Georgia Institute of Technology , Atlanta , Georgia 30332-0363 , United States
| | - Giovanni Gadda
- Department of Chemistry , Georgia State University , Atlanta , Georgia 30302-3965 , United States.,Center for Diagnostics and Therapeutics , Georgia State University , Atlanta , Georgia 30302-3965 , United States.,Center for Biotechnology and Drug Design , Georgia State University , Atlanta , Georgia 30302-3965 , United States.,Department of Biology , Georgia State University , Atlanta , Georgia 30302-3965 , United States
| | - Andreas S Bommarius
- School of Chemical and Biomolecular Engineering , Georgia Institute of Technology , Atlanta , Georgia 30332-0100 , United States.,Engineered Biosystems Building (EBB) , Georgia Institute of Technology , Atlanta , Georgia 30332-2000 , United States.,School of Chemistry and Biochemistry, Parker H. Petit Institute of Bioengineering and Bioscience , Georgia Institute of Technology , Atlanta , Georgia 30332-0363 , United States
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72
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Seel CJ, Králík A, Hacker M, Frank A, König B, Gulder T. Atom-Economic Electron Donors for Photobiocatalytic Halogenations. ChemCatChem 2018. [DOI: 10.1002/cctc.201800886] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Catharina Julia Seel
- Department of Chemistry and Catalysis Research Center (CRC); Technical University Munich; Lichtenbergstrasse 4 85747 Garching Germany
| | - Antonín Králík
- Institute of Organic Chemistry; University of Regensburg; Universitätsstraße 31 93053 Regensburg Germany
| | - Melanie Hacker
- Institute of Organic Chemistry; University of Regensburg; Universitätsstraße 31 93053 Regensburg Germany
| | - Annika Frank
- Department of Chemistry, Center for Integrated Protein Science; Technical University Munich; Lichtenbergstrasse 4 85747 Garching Germany
| | - Burkhard König
- Institute of Organic Chemistry; University of Regensburg; Universitätsstraße 31 93053 Regensburg Germany
| | - Tanja Gulder
- Department of Chemistry and Catalysis Research Center (CRC); Technical University Munich; Lichtenbergstrasse 4 85747 Garching Germany
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73
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Zhang W, Hollmann F. Nonconventional regeneration of redox enzymes - a practical approach for organic synthesis? Chem Commun (Camb) 2018; 54:7281-7289. [PMID: 29714371 DOI: 10.1039/c8cc02219d] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxidoreductases have become useful tools in the hands of chemists to perform selective and mild oxidation and reduction reactions. Instead of mimicking native catalytic cycles, generally involving costly and unstable nicotinamide cofactors, more direct, NAD(P)-independent methodologies are being developed. The promise of these approaches not only lies with simpler and cheaper reaction schemes but also with higher selectivity as compared to whole cell approaches and their mimics.
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Affiliation(s)
- Wuyuan Zhang
- Delft University of Technology, van der Maasweg 9, 2629HZ Delft, The Netherlands.
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74
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Dong J, Fernández‐Fueyo E, Hollmann F, Paul CE, Pesic M, Schmidt S, Wang Y, Younes S, Zhang W. Biocatalytic Oxidation Reactions: A Chemist's Perspective. Angew Chem Int Ed Engl 2018; 57:9238-9261. [PMID: 29573076 PMCID: PMC6099261 DOI: 10.1002/anie.201800343] [Citation(s) in RCA: 276] [Impact Index Per Article: 46.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Indexed: 01/25/2023]
Abstract
Oxidation chemistry using enzymes is approaching maturity and practical applicability in organic synthesis. Oxidoreductases (enzymes catalysing redox reactions) enable chemists to perform highly selective and efficient transformations ranging from simple alcohol oxidations to stereoselective halogenations of non-activated C-H bonds. For many of these reactions, no "classical" chemical counterpart is known. Hence oxidoreductases open up shorter synthesis routes based on a more direct access to the target products. The generally very mild reaction conditions may also reduce the environmental impact of biocatalytic reactions compared to classical counterparts. In this Review, we critically summarise the most important recent developments in the field of biocatalytic oxidation chemistry and identify the most pressing bottlenecks as well as promising solutions.
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Affiliation(s)
- JiaJia Dong
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Elena Fernández‐Fueyo
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Frank Hollmann
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Caroline E. Paul
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Milja Pesic
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Sandy Schmidt
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Yonghua Wang
- School of Food Science and EngineeringSouth China University of TechnologyGuangzhou510640P. R. China
| | - Sabry Younes
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
| | - Wuyuan Zhang
- Department of BiotechnologyDelft University of Technologyvan der Maasweg 92629HZDelftThe Netherlands
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75
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Shuffling the Neutral Drift of Unspecific Peroxygenase in Saccharomyces cerevisiae. Appl Environ Microbiol 2018; 84:AEM.00808-18. [PMID: 29776931 PMCID: PMC6052263 DOI: 10.1128/aem.00808-18] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 05/14/2018] [Indexed: 12/20/2022] Open
Abstract
Fungal peroxygenases resemble the peroxide shunt pathway of cytochrome P450 monoxygenases, performing selective oxyfunctionalizations of unactivated C-H bonds in a broad range of organic compounds. In this study, we combined neutral genetic drift and in vivo DNA shuffling to generate highly functional peroxygenase mutant libraries. The panel of neutrally evolved peroxygenases showed different activity profiles for peroxygenative substrates and improved stability with respect to temperature and the presence of organic cosolvents, making the enzymes valuable blueprints for emerging evolution campaigns. This association of DNA recombination and neutral drift is paving the way for future work in peroxygenase engineering and, from a more general perspective, to any other enzyme system heterologously expressed in S. cerevisiae. Unspecific peroxygenase (UPO) is a highly promiscuous biocatalyst, and its selective mono(per)oxygenase activity makes it useful for many synthetic chemistry applications. Among the broad repertory of library creation methods for directed enzyme evolution, genetic drift allows neutral mutations to be accumulated gradually within a polymorphic network of variants. In this study, we conducted a campaign of genetic drift with UPO in Saccharomyces cerevisiae, so that neutral mutations were simply added and recombined in vivo. With low mutational loading and an activity threshold of 45% of the parent's native function, mutant libraries enriched in folded active UPO variants were generated. After only eight rounds of genetic drift and DNA shuffling, we identified an ensemble of 25 neutrally evolved variants with changes in peroxidative and peroxygenative activities, kinetic thermostability, and enhanced tolerance to organic solvents. With an average of 4.6 substitutions introduced per clone, neutral mutations covered approximately 10% of the protein sequence. Accordingly, this study opens new avenues for UPO design by bringing together neutral genetic drift and DNA recombination in vivo. IMPORTANCE Fungal peroxygenases resemble the peroxide shunt pathway of cytochrome P450 monoxygenases, performing selective oxyfunctionalizations of unactivated C-H bonds in a broad range of organic compounds. In this study, we combined neutral genetic drift and in vivo DNA shuffling to generate highly functional peroxygenase mutant libraries. The panel of neutrally evolved peroxygenases showed different activity profiles for peroxygenative substrates and improved stability with respect to temperature and the presence of organic cosolvents, making the enzymes valuable blueprints for emerging evolution campaigns. This association of DNA recombination and neutral drift is paving the way for future work in peroxygenase engineering and, from a more general perspective, to any other enzyme system heterologously expressed in S. cerevisiae.
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Dong J, Fernández-Fueyo E, Hollmann F, Paul CE, Pesic M, Schmidt S, Wang Y, Younes S, Zhang W. Biokatalytische Oxidationsreaktionen - aus der Sicht eines Chemikers. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800343] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- JiaJia Dong
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Elena Fernández-Fueyo
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Frank Hollmann
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Caroline E. Paul
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Milja Pesic
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Sandy Schmidt
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Yonghua Wang
- School of Food Science and Engineering; South China University of Technology; Guangzhou 510640 P. R. China
| | - Sabry Younes
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
| | - Wuyuan Zhang
- Department of Biotechnology; Delft University of Technology; van der Maasweg 9 2629HZ Delft Niederlande
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Lee SH, Choi DS, Kuk SK, Park CB. Photobiokatalyse: Aktivierung von Redoxenzymen durch direkten oder indirekten Transfer photoinduzierter Elektronen. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201710070] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Sahng Ha Lee
- Department of Materials Science and EngineeringKorea Advanced Institute of Science and Technology (KAIST) 335 Science Road Daejeon 305-701 Republik Korea
| | - Da Som Choi
- Department of Materials Science and EngineeringKorea Advanced Institute of Science and Technology (KAIST) 335 Science Road Daejeon 305-701 Republik Korea
| | - Su Keun Kuk
- Department of Materials Science and EngineeringKorea Advanced Institute of Science and Technology (KAIST) 335 Science Road Daejeon 305-701 Republik Korea
| | - Chan Beum Park
- Department of Materials Science and EngineeringKorea Advanced Institute of Science and Technology (KAIST) 335 Science Road Daejeon 305-701 Republik Korea
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78
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Side chain removal from corticosteroids by unspecific peroxygenase. J Inorg Biochem 2018; 183:84-93. [DOI: 10.1016/j.jinorgbio.2018.03.011] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 03/22/2018] [Indexed: 11/20/2022]
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Lee SH, Choi DS, Kuk SK, Park CB. Photobiocatalysis: Activating Redox Enzymes by Direct or Indirect Transfer of Photoinduced Electrons. Angew Chem Int Ed Engl 2018; 57:7958-7985. [PMID: 29194901 DOI: 10.1002/anie.201710070] [Citation(s) in RCA: 190] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Revised: 11/21/2017] [Indexed: 01/01/2023]
Abstract
Biocatalytic transformation has received increasing attention in the green synthesis of chemicals because of the diversity of enzymes, their high catalytic activities and specificities, and mild reaction conditions. The idea of solar energy utilization in chemical synthesis through the combination of photocatalysis and biocatalysis provides an opportunity to make the "green" process greener. Oxidoreductases catalyze redox transformation of substrates by exchanging electrons at the enzyme's active site, often with the aid of electron mediator(s) as a counterpart. Recent progress indicates that photoinduced electron transfer using organic (or inorganic) photosensitizers can activate a wide spectrum of redox enzymes to catalyze fuel-forming reactions (e.g., H2 evolution, CO2 reduction) and synthetically useful reductions (e.g., asymmetric reduction, oxygenation, hydroxylation, epoxidation, Baeyer-Villiger oxidation). This Review provides an overview of recent advances in light-driven activation of redox enzymes through direct or indirect transfer of photoinduced electrons.
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Affiliation(s)
- Sahng Ha Lee
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon, 305-701, Republic of Korea
| | - Da Som Choi
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon, 305-701, Republic of Korea
| | - Su Keun Kuk
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon, 305-701, Republic of Korea
| | - Chan Beum Park
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 335 Science Road, Daejeon, 305-701, Republic of Korea
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80
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Gomez de Santos P, Cañellas M, Tieves F, Younes SHH, Molina-Espeja P, Hofrichter M, Hollmann F, Guallar V, Alcalde M. Selective Synthesis of the Human Drug Metabolite 5′-Hydroxypropranolol by an Evolved Self-Sufficient Peroxygenase. ACS Catal 2018. [DOI: 10.1021/acscatal.8b01004] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
| | - Marina Cañellas
- Joint BSC-CRG-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, 08034 Barcelona, Spain
| | - Florian Tieves
- Department of Biotechnology, Delft University of Technology, van der Massweg 9, 2629HZ Delft, The Netherlands
| | - Sabry H. H. Younes
- Department of Biotechnology, Delft University of Technology, van der Massweg 9, 2629HZ Delft, The Netherlands
| | | | - Martin Hofrichter
- Department of Bio- and Environmental Sciences, TU Dresden, International Institute Zittau, Mark 23, 02763 Zittau, Germany
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, van der Massweg 9, 2629HZ Delft, The Netherlands
| | - Victor Guallar
- Joint BSC-CRG-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, 08034 Barcelona, Spain
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049 Madrid, Spain
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81
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Carro J, Fernández-Fueyo E, Fernández-Alonso C, Cañada J, Ullrich R, Hofrichter M, Alcalde M, Ferreira P, Martínez AT. Self-sustained enzymatic cascade for the production of 2,5-furandicarboxylic acid from 5-methoxymethylfurfural. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:86. [PMID: 29619082 PMCID: PMC5880071 DOI: 10.1186/s13068-018-1091-2] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Accepted: 03/21/2018] [Indexed: 05/25/2023]
Abstract
BACKGROUND 2,5-Furandicarboxylic acid is a renewable building block for the production of polyfurandicarboxylates, which are biodegradable polyesters expected to substitute their classical counterparts derived from fossil resources. It may be produced from bio-based 5-hydroxymethylfurfural or 5-methoxymethylfurfural, both obtained by the acidic dehydration of biomass-derived fructose. 5-Methoxymethylfurfural, which is produced in the presence of methanol, generates less by-products and exhibits better storage stability than 5-hydroxymethylfurfural being, therefore, the industrial substrate of choice. RESULTS In this work, an enzymatic cascade involving three fungal oxidoreductases has been developed for the production of 2,5-furandicarboxylic acid from 5-methoxymethylfurfural. Aryl-alcohol oxidase and unspecific peroxygenase act on 5-methoxymethylfurfural and its partially oxidized derivatives yielding 2,5-furandicarboxylic acid, as well as methanol as a by-product. Methanol oxidase takes advantage of the methanol released for in situ producing H2O2 that, along with that produced by aryl-alcohol oxidase, fuels the peroxygenase reactions. In this way, the enzymatic cascade proceeds independently, with the only input of atmospheric O2, to attain a 70% conversion of initial 5-methoxymethylfurfural. The addition of some exogenous methanol to the reaction further improves the yield to attain an almost complete conversion of 5-methoxymethylfurfural into 2,5-furandicarboxylic acid. CONCLUSIONS The synergistic action of aryl-alcohol oxidase and unspecific peroxygenase in the presence of 5-methoxymethylfurfural and O2 is sufficient for the production of 2,5-furandicarboxylic acid. The addition of methanol oxidase to the enzymatic cascade increases the 2,5-furandicarboxylic acid yields by oxidizing a reaction by-product to fuel the peroxygenase reactions.
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Affiliation(s)
- Juan Carro
- Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
| | - Elena Fernández-Fueyo
- Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
| | | | - Javier Cañada
- Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
| | - René Ullrich
- Department of Bio- and Environmental Sciences, International Institute Zittau - Technische Universität Dresden, Markt 23, 02763 Zittau, Germany
| | - Martin Hofrichter
- Department of Bio- and Environmental Sciences, International Institute Zittau - Technische Universität Dresden, Markt 23, 02763 Zittau, Germany
| | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, Marie Curie 2, E-28049 Madrid, Spain
| | - Patricia Ferreira
- Department of Biochemistry and Molecular and Cellular Biology and BIFI, University of Zaragoza, E-50009 Saragossa, Spain
| | - Angel T. Martínez
- Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain
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82
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Dong JJ, Fernández-Fueyo E, Li J, Guo Z, Renirie R, Wever R, Hollmann F. Halofunctionalization of alkenes by vanadium chloroperoxidase from Curvularia inaequalis. Chem Commun (Camb) 2018; 53:6207-6210. [PMID: 28548142 DOI: 10.1039/c7cc03368k] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The vanadium-dependent chloroperoxidase from Curvularia inaequalis is a stable and efficient biocatalyst for the hydroxyhalogenation of a broad range of alkenes into halohydrins. Up to 1 200 000 TON with 69 s-1 TOF were observed for the biocatalyst. A bienzymatic cascade to yield epoxides as reaction products is presented.
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Affiliation(s)
- Jia Jia Dong
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands.
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83
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Affiliation(s)
- Josef M. Sperl
- Chair of Chemistry of Biogenic
Resources, Technical University of Munich, Campus Straubing for Biotechnology
and Sustainability, Schulgasse 16, 94315 Straubing, Germany
| | - Volker Sieber
- Chair of Chemistry of Biogenic
Resources, Technical University of Munich, Campus Straubing for Biotechnology
and Sustainability, Schulgasse 16, 94315 Straubing, Germany
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84
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Gandomkar S, Dennig A, Dordic A, Hammerer L, Pickl M, Haas T, Hall M, Faber K. Biocatalytic Oxidative Cascade for the Conversion of Fatty Acids into α-Ketoacids via Internal H 2 O 2 Recycling. Angew Chem Int Ed Engl 2018; 57:427-430. [PMID: 29125663 PMCID: PMC5768024 DOI: 10.1002/anie.201710227] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Indexed: 11/18/2022]
Abstract
The functionalization of bio-based chemicals is essential to allow valorization of natural carbon sources. An atom-efficient biocatalytic oxidative cascade was developed for the conversion of saturated fatty acids to α-ketoacids. Employment of P450 monooxygenase in the peroxygenase mode for regioselective α-hydroxylation of fatty acids combined with enantioselective oxidation by α-hydroxyacid oxidase(s) resulted in internal recycling of the oxidant H2 O2 , thus minimizing degradation of ketoacid product and maximizing biocatalyst lifetime. The O2 -dependent cascade relies on catalytic amounts of H2 O2 and releases water as sole by-product. Octanoic acid was converted under mild conditions in aqueous buffer to 2-oxooctanoic acid in a simultaneous one-pot two-step cascade in up to >99 % conversion without accumulation of hydroxyacid intermediate. Scale-up allowed isolation of final product in 91 % yield and the cascade was applied to fatty acids of various chain lengths (C6:0 to C10:0).
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Affiliation(s)
- Somayyeh Gandomkar
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
| | - Alexander Dennig
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
| | - Andela Dordic
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
- Austrian Center of Industrial Biotechnology c/oDepartment of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
| | - Lucas Hammerer
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
- Austrian Center of Industrial Biotechnology c/oDepartment of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
| | - Mathias Pickl
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
| | - Thomas Haas
- CreavisEvonik Industries, Bau 1420Paul Baumann Strasse 145772MarlGermany
| | - Mélanie Hall
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
| | - Kurt Faber
- Department of ChemistryUniversity of GrazHeinrichstrasse 288010GrazAustria
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85
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Bassanini I, Ferrandi EE, Vanoni M, Ottolina G, Riva S, Crotti M, Brenna E, Monti D. Peroxygenase-Catalyzed Enantioselective Sulfoxidations. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701390] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Ivan Bassanini
- Istituto di Chimica del Riconoscimento Molecolare; Consiglio Nazionale delle Ricerche; Via Mario Bianco 9 20131 Milano Italy
- Dipartimento di Chimica; Università degli Studi di Milano; Via Golgi 19 20133 Milano Italy
| | - Erica Elisa Ferrandi
- Istituto di Chimica del Riconoscimento Molecolare; Consiglio Nazionale delle Ricerche; Via Mario Bianco 9 20131 Milano Italy
| | - Marta Vanoni
- Istituto di Chimica del Riconoscimento Molecolare; Consiglio Nazionale delle Ricerche; Via Mario Bianco 9 20131 Milano Italy
| | - Gianluca Ottolina
- Istituto di Chimica del Riconoscimento Molecolare; Consiglio Nazionale delle Ricerche; Via Mario Bianco 9 20131 Milano Italy
| | - Sergio Riva
- Istituto di Chimica del Riconoscimento Molecolare; Consiglio Nazionale delle Ricerche; Via Mario Bianco 9 20131 Milano Italy
| | - Michele Crotti
- Dipartimento di Chimica, Materiali, Ingegneria Chimica; Politecnico di Milano; Via Mancinelli 7 20131 Milano Italy
| | - Elisabetta Brenna
- Dipartimento di Chimica, Materiali, Ingegneria Chimica; Politecnico di Milano; Via Mancinelli 7 20131 Milano Italy
| | - Daniela Monti
- Istituto di Chimica del Riconoscimento Molecolare; Consiglio Nazionale delle Ricerche; Via Mario Bianco 9 20131 Milano Italy
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86
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Liu J, Wu S, Li Z. Recent advances in enzymatic oxidation of alcohols. Curr Opin Chem Biol 2017; 43:77-86. [PMID: 29258054 DOI: 10.1016/j.cbpa.2017.12.001] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Revised: 11/03/2017] [Accepted: 12/04/2017] [Indexed: 01/07/2023]
Abstract
Enzymatic alcohol oxidation plays an important role in chemical synthesis. In the past two years, new alcohol oxidation enzymes were developed through genome-mining and protein engineering, such as new copper radical oxidases with broad substrate scope, alcohol dehydrogenases with altered cofactor preference and a flavin-dependent alcohol oxidase with enhanced oxygen coupling. New cofactor recycling methods were reported for alcohol dehydrogenase-catalyzed oxidation with photocatalyst and coupled glutaredoxin-glutathione reductase as promising examples. Different alcohol oxidation systems were used for the oxidation of primary and secondary alcohols, especially in the cascade conversion of alcohols to lactones, lactams, chiral amines, chiral alcohols and hydroxyketones. Among them, biocatalyst with low enantioselectivity demonstrated an interesting feature for complete conversion of racemic secondary alcohols through non-enantioselective oxidation.
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Affiliation(s)
- Ji Liu
- Department of Chemical and Biomolecular Engineering, 4 Engineering Drive 4, National University of Singapore, Singapore 117585, Singapore
| | - Shuke Wu
- Department of Chemical and Biomolecular Engineering, 4 Engineering Drive 4, National University of Singapore, Singapore 117585, Singapore
| | - Zhi Li
- Department of Chemical and Biomolecular Engineering, 4 Engineering Drive 4, National University of Singapore, Singapore 117585, Singapore.
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87
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Gandomkar S, Dennig A, Dordic A, Hammerer L, Pickl M, Haas T, Hall M, Faber K. Eine biokatalytische oxidative Kaskade für die Umsetzung von Fettsäuren zu α-Ketosäuren mit interner H2
O2
-Regeneration. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201710227] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Somayyeh Gandomkar
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
| | - Alexander Dennig
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
| | - Andela Dordic
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
- Austrian Center of Industrial Biotechnology c/o; Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
| | - Lucas Hammerer
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
- Austrian Center of Industrial Biotechnology c/o; Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
| | - Mathias Pickl
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
| | - Thomas Haas
- Creavis; Evonik Industries, Bau 1420; Paul Baumann Straße 1 45772 Marl Deutschland
| | - Mélanie Hall
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
| | - Kurt Faber
- Institut für Chemie; Universität Graz; Heinrichstraße 28 8010 Graz Österreich
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88
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Selective aerobic oxidation reactions using a combination of photocatalytic water oxidation and enzymatic oxyfunctionalisations. Nat Catal 2017; 1:55-62. [PMID: 29430568 PMCID: PMC5798593 DOI: 10.1038/s41929-017-0001-5] [Citation(s) in RCA: 172] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
Peroxygenases offer attractive means to address challenges in selective oxyfunctionalisation chemistry. Despite their attractiveness, the application of peroxygenases in synthetic chemistry remains challenging due to their facile inactivation by the stoichiometric oxidant (H2O2). Often atom inefficient peroxide generation systems are required, which show little potential for large scale implementation. Here we show that visible light-driven, catalytic water oxidation can be used for in situ generation of H2O2 from water, rendering the peroxygenase catalytically active. In this way the stereoselective oxyfunctionalisation of hydrocarbons can be achieved by simply using the catalytic system, water and visible light.
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89
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Kuusk S, Bissaro B, Kuusk P, Forsberg Z, Eijsink VGH, Sørlie M, Väljamäe P. Kinetics of H 2O 2-driven degradation of chitin by a bacterial lytic polysaccharide monooxygenase. J Biol Chem 2017; 293:523-531. [PMID: 29138240 DOI: 10.1074/jbc.m117.817593] [Citation(s) in RCA: 103] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Revised: 10/31/2017] [Indexed: 11/06/2022] Open
Abstract
Lytic polysaccharide monooxygenases (LPMOs) catalyze the oxidative cleavage of glycosidic bonds in recalcitrant polysaccharides, such as cellulose and chitin, and are of interest in biotechnological utilization of these abundant biomaterials. It has recently been shown that LPMOs can use H2O2, instead of O2, as a cosubstrate. This peroxygenase-like reaction by a monocopper enzyme is unprecedented in nature and opens new avenues in chemistry and enzymology. Here, we provide the first detailed kinetic characterization of chitin degradation by the bacterial LPMO chitin-binding protein CBP21 using H2O2 as cosubstrate. The use of 14C-labeled chitin provided convenient and sensitive detection of the released soluble products, which enabled detailed kinetic measurements. The kcat for chitin oxidation found here (5.6 s-1) is more than an order of magnitude higher than previously reported (apparent) rate constants for reactions containing O2 but no added H2O2 The kcat/Km for H2O2-driven degradation of chitin was on the order of 106 m-1 s-1, indicating that LPMOs have catalytic efficiencies similar to those of peroxygenases. Of note, H2O2 also inactivated CBP21, but the second-order rate constant for inactivation was about 3 orders of magnitude lower than that for catalysis. In light of the observed CBP21 inactivation at higher H2O2 levels, we conclude that controlled generation of H2O2in situ seems most optimal for fueling LPMO-catalyzed oxidation of polysaccharides.
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Affiliation(s)
- Silja Kuusk
- From the Institute of Molecular and Cell Biology, University of Tartu, 51010 Tartu, Estonia
| | - Bastien Bissaro
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1433 Ås, Norway, and
| | - Piret Kuusk
- Institute of Physics, University of Tartu, 50411 Tartu, Estonia
| | - Zarah Forsberg
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1433 Ås, Norway, and
| | - Vincent G H Eijsink
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1433 Ås, Norway, and
| | - Morten Sørlie
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, 1433 Ås, Norway, and
| | - Priit Väljamäe
- From the Institute of Molecular and Cell Biology, University of Tartu, 51010 Tartu, Estonia,
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90
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Zhang W, Burek BO, Fernández-Fueyo E, Alcalde M, Bloh JZ, Hollmann F. Selektive C-H-Bindungsaktivierung durch eine Kaskade aus Photochemie und Biokatalyse. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201708668] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Wuyuan Zhang
- Department of Biotechnology; Delft University of Technology; Van der Maasweg 9 2629HZ Delft Niederlande
| | - Bastien O. Burek
- DECHEMA-Forschungsinstitut; Theodor-Heuss-Allee 25 60486 Frankfurt am Main Deutschland
| | | | - Miguel Alcalde
- Department of Biocatalysis; Institute of Catalysis; CSIC; 28049 Madrid Spanien
| | - Jonathan Z. Bloh
- DECHEMA-Forschungsinstitut; Theodor-Heuss-Allee 25 60486 Frankfurt am Main Deutschland
| | - Frank Hollmann
- Department of Biotechnology; Delft University of Technology; Van der Maasweg 9 2629HZ Delft Niederlande
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91
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Zhang W, Burek BO, Fernández-Fueyo E, Alcalde M, Bloh JZ, Hollmann F. Selective Activation of C-H Bonds in a Cascade Process Combining Photochemistry and Biocatalysis. Angew Chem Int Ed Engl 2017; 56:15451-15455. [PMID: 28994504 PMCID: PMC5725739 DOI: 10.1002/anie.201708668] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 10/08/2017] [Indexed: 11/08/2022]
Abstract
Selective oxyfunctionalizations of inert C-H bonds can be achieved under mild conditions by using peroxygenases. This approach, however, suffers from the poor robustness of these enzymes in the presence of hydrogen peroxide as the stoichiometric oxidant. Herein, we demonstrate that inorganic photocatalysts such as gold-titanium dioxide efficiently provide H2 O2 through the methanol-driven reductive activation of ambient oxygen in amounts that ensure that the enzyme remains highly active and stable. Using this approach, the stereoselective hydroxylation of ethylbenzene to (R)-1-phenylethanol was achieved with high enantioselectivity (>98 % ee) and excellent turnover numbers for the biocatalyst (>71 000).
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Affiliation(s)
- Wuyuan Zhang
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ, Delft, The Netherlands
| | - Bastien O Burek
- DECHEMA-Forschungsinstitut, Theodor-Heuss-Allee 25, 60486, Frankfurt am Main, Germany
| | | | - Miguel Alcalde
- Department of Biocatalysis, Institute of Catalysis, CSIC, 28049, Madrid, Spain
| | - Jonathan Z Bloh
- DECHEMA-Forschungsinstitut, Theodor-Heuss-Allee 25, 60486, Frankfurt am Main, Germany
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ, Delft, The Netherlands
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92
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Martínez AT, Ruiz-Dueñas FJ, Camarero S, Serrano A, Linde D, Lund H, Vind J, Tovborg M, Herold-Majumdar OM, Hofrichter M, Liers C, Ullrich R, Scheibner K, Sannia G, Piscitelli A, Pezzella C, Sener ME, Kılıç S, van Berkel WJ, Guallar V, Lucas MF, Zuhse R, Ludwig R, Hollmann F, Fernández-Fueyo E, Record E, Faulds CB, Tortajada M, Winckelmann I, Rasmussen JA, Gelo-Pujic M, Gutiérrez A, del Río JC, Rencoret J, Alcalde M. Oxidoreductases on their way to industrial biotransformations. Biotechnol Adv 2017. [DOI: 10.1016/j.biotechadv.2017.06.003] [Citation(s) in RCA: 130] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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93
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Montersino S, Te Poele E, Orru R, Westphal AH, Barendregt A, Heck AJR, van der Geize R, Dijkhuizen L, Mattevi A, van Berkel WJH. 3-Hydroxybenzoate 6-Hydroxylase from Rhodococcus jostii RHA1 Contains a Phosphatidylinositol Cofactor. Front Microbiol 2017; 8:1110. [PMID: 28670303 PMCID: PMC5472690 DOI: 10.3389/fmicb.2017.01110] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2017] [Accepted: 05/31/2017] [Indexed: 01/05/2023] Open
Abstract
3-Hydroxybenzoate 6-hydroxylase (3HB6H, EC 1.13.14.26) is a FAD-dependent monooxygenase involved in the catabolism of aromatic compounds in soil microorganisms. 3HB6H is unique among flavoprotein hydroxylases in that it harbors a phospholipid ligand. The purified protein obtained from expressing the gene encoding 3HB6H from Rhodococcus jostii RHA1 in the host Escherichia coli contains a mixture of phosphatidylglycerol and phosphatidylethanolamine, which are the major constituents of E. coli's cytoplasmic membrane. Here, we purified 3HB6H (RjHB6H) produced in the host R. jostii RHA#2 by employing a newly developed actinomycete expression system. Biochemical and biophysical analysis revealed that Rj3HB6H possesses similar catalytic and structural features as 3HB6H, but now contains phosphatidylinositol, which is a specific constituent of actinomycete membranes. Native mass spectrometry suggests that the lipid cofactor stabilizes monomer-monomer contact. Lipid analysis of 3HB6H from Pseudomonas alcaligenes NCIMB 9867 (Pa3HB6H) produced in E. coli supports the conclusion that 3HB6H enzymes have an intrinsic ability to bind phospholipids with different specificity, reflecting the membrane composition of their bacterial host.
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Affiliation(s)
- Stefania Montersino
- Laboratory of Biochemistry, Wageningen University and ResearchWageningen, Netherlands
| | - Evelien Te Poele
- Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of GroningenGroningen, Netherlands
| | - Roberto Orru
- Department of Biology and Biotechnology, University of PaviaPavia, Italy
| | - Adrie H Westphal
- Laboratory of Biochemistry, Wageningen University and ResearchWageningen, Netherlands
| | - Arjan Barendregt
- Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Research, Utrecht UniversityUtrecht, Netherlands
| | - Albert J R Heck
- Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Research, Utrecht UniversityUtrecht, Netherlands
| | - Robert van der Geize
- Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of GroningenGroningen, Netherlands
| | - Lubbert Dijkhuizen
- Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of GroningenGroningen, Netherlands
| | - Andrea Mattevi
- Department of Biology and Biotechnology, University of PaviaPavia, Italy
| | - Willem J H van Berkel
- Laboratory of Biochemistry, Wageningen University and ResearchWageningen, Netherlands
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94
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Schrittwieser JH, Velikogne S, Hall M, Kroutil W. Artificial Biocatalytic Linear Cascades for Preparation of Organic Molecules. Chem Rev 2017; 118:270-348. [DOI: 10.1021/acs.chemrev.7b00033] [Citation(s) in RCA: 371] [Impact Index Per Article: 53.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Joerg H. Schrittwieser
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Stefan Velikogne
- ACIB
GmbH, Department of Chemistry, University of Graz, Heinrichstrasse
28, 8010 Graz, Austria
| | - Mélanie Hall
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Wolfgang Kroutil
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
- ACIB
GmbH, Department of Chemistry, University of Graz, Heinrichstrasse
28, 8010 Graz, Austria
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95
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Wang Y, Lan D, Durrani R, Hollmann F. Peroxygenases en route to becoming dream catalysts. What are the opportunities and challenges? Curr Opin Chem Biol 2017; 37:1-9. [DOI: 10.1016/j.cbpa.2016.10.007] [Citation(s) in RCA: 145] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2016] [Revised: 10/12/2016] [Accepted: 10/13/2016] [Indexed: 01/09/2023]
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96
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Choi DS, Ni Y, Fernández-Fueyo E, Lee M, Hollmann F, Park CB. Photoelectroenzymatic Oxyfunctionalization on Flavin-Hybridized Carbon Nanotube Electrode Platform. ACS Catal 2017. [DOI: 10.1021/acscatal.6b03453] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Da Som Choi
- Department
of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon 305−701, Republic of Korea
| | - Yan Ni
- Department
of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Elena Fernández-Fueyo
- Department
of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Minah Lee
- Department
of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon 305−701, Republic of Korea
| | - Frank Hollmann
- Department
of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
| | - Chan Beum Park
- Department
of Materials Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon 305−701, Republic of Korea
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97
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Ranganathan S, Sieber V. Development of semi-continuous chemo-enzymatic terpene epoxidation: combination of anthraquinone autooxidation and the lipase-mediated epoxidation process. REACT CHEM ENG 2017. [DOI: 10.1039/c7re00112f] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Novel combination of anthraquinone process and lipase-mediated epoxidation in a semi-continuous approach, exclusively for monoterpenes.
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Affiliation(s)
- Sumanth Ranganathan
- Technical University of Munich
- Chair of Chemistry of Biogenic Resources
- Straubing 94315
- Germany
| | - Volker Sieber
- Technical University of Munich
- Chair of Chemistry of Biogenic Resources
- Straubing 94315
- Germany
- Technical University of Munich
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98
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Blaschke L, Wagner W, Werkmeister C, Wild M, Gihring A, Rupp S, Zibek S. Development of a simplified purification method for a novel formaldehyde dismutase variant from Pseudomonas putida J3. J Biotechnol 2017; 241:69-75. [DOI: 10.1016/j.jbiotec.2016.11.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Revised: 11/03/2016] [Accepted: 11/07/2016] [Indexed: 11/24/2022]
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99
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France SP, Hepworth LJ, Turner NJ, Flitsch SL. Constructing Biocatalytic Cascades: In Vitro and in Vivo Approaches to de Novo Multi-Enzyme Pathways. ACS Catal 2016. [DOI: 10.1021/acscatal.6b02979] [Citation(s) in RCA: 271] [Impact Index Per Article: 33.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Scott P. France
- School of Chemistry, Manchester
Institute of Biotechnology, The University of Manchester, 131 Princess
Street, Manchester M1 7DN, United Kingdom
| | - Lorna J. Hepworth
- School of Chemistry, Manchester
Institute of Biotechnology, The University of Manchester, 131 Princess
Street, Manchester M1 7DN, United Kingdom
| | - Nicholas J. Turner
- School of Chemistry, Manchester
Institute of Biotechnology, The University of Manchester, 131 Princess
Street, Manchester M1 7DN, United Kingdom
| | - Sabine L. Flitsch
- School of Chemistry, Manchester
Institute of Biotechnology, The University of Manchester, 131 Princess
Street, Manchester M1 7DN, United Kingdom
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100
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Exploring the catalase activity of unspecific peroxygenases and the mechanism of peroxide-dependent heme destruction. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcatb.2016.10.014] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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