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Cui Y, Zhao Y, Lu Y, Su X, Chen Y, Shen Y, Lin J, Li X. In vivo single-particle tracking of the aquaporin AtPIP2;1 in stomata reveals cell type-specific dynamics. PLANT PHYSIOLOGY 2021; 185:1666-1681. [PMID: 33569600 PMCID: PMC8133650 DOI: 10.1093/plphys/kiab007] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Accepted: 12/23/2020] [Indexed: 05/20/2023]
Abstract
Aquaporins such as the plasma membrane intrinsic proteins (PIPs) allow water to move through cell membranes and are vital for stomatal movement in plants. Despite their importance, the dynamic changes in aquaporins during water efflux and influx have not been directly observed in real time in vivo. Here, to determine which factors regulate these changes during the bidirectional translocation of water, we examined aquaporin dynamics during the stomatal immune response to the bacterial flagellin-derived peptide flg22. The Arabidopsis (Arabidopsis thaliana) aquaporin mutant pip2;1 showed defects in the flg22-induced stomatal response. Variable-angle total internal reflection fluorescence microscopy revealed that the movement dynamics and dwell times of AQ6]GFP-AtPIP2;1 in guard cells and subsidiary cells exhibited cell type-specific dependencies on flg22. The cytoskeleton, rather than the cell wall, was the major factor regulating AtPIP2;1 dynamics, although both the cytoskeleton and cell wall might form bounded domains that restrict the diffusion of AtPIP2;1 in guard cells and subsidiary cells. Finally, our analysis revealed the different roles of cortical actin and microtubules in regulating AtPIP2;1 dynamics in guard cells, as well as subsidiary cells, under various conditions. Our observations shed light on the heterogeneous mechanisms that regulate membrane protein dynamics in plants in response to pathogens.
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Affiliation(s)
- Yaning Cui
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
| | - Yanxia Zhao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
| | - Yuqing Lu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
| | - Xiao Su
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
| | - Yingying Chen
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
| | - Yingbai Shen
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Xiaojuan Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences & Technology, Beijing Forestry University, Beijing 100083, China
- Author for communication:
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52
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Smokvarska M, Jaillais Y, Martinière A. Function of membrane domains in rho-of-plant signaling. PLANT PHYSIOLOGY 2021; 185:663-681. [PMID: 33793925 PMCID: PMC8133555 DOI: 10.1093/plphys/kiaa082] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 11/25/2020] [Indexed: 05/18/2023]
Abstract
In a crowded environment, establishing interactions between different molecular partners can take a long time. Biological membranes have solved this issue, as they simultaneously are fluid and possess compartmentalized domains. This nanoscale organization of the membrane is often based on weak, local, and multivalent interactions between lipids and proteins. However, from local interactions at the nanoscale, different functional properties emerge at the higher scale, and these are critical to regulate and integrate cellular signaling. Rho of Plant (ROP) proteins are small guanosine triphosphate hydrolase enzymes (GTPases) involved in hormonal, biotic, and abiotic signaling, as well as fundamental cell biological properties such as polarity, vesicular trafficking, and cytoskeleton dynamics. Association with the membrane is essential for ROP function, as well as their precise targeting within micrometer-sized polar domains (i.e. microdomains) and nanometer-sized clusters (i.e. nanodomains). Here, we review our current knowledge about the formation and the maintenance of the ROP domains in membranes. Furthermore, we propose a model for ROP membrane targeting and discuss how the nanoscale organization of ROPs in membranes could determine signaling parameters like signal specificity, amplification, and integration.
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Affiliation(s)
- Marija Smokvarska
- BPMP, CNRS, INRAE, Univ Montpellier, Montpellier SupAgro, 34060 Montpellier, France
| | - Yvon Jaillais
- Laboratoire Reproduction et Développement des Plantes, CNRS, INRAE, Université de Lyon, ENS de Lyon, UCB Lyon 1, F-69342 Lyon, France
| | - Alexandre Martinière
- BPMP, CNRS, INRAE, Univ Montpellier, Montpellier SupAgro, 34060 Montpellier, France
- Author for communication:
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53
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Liu Z, Gao J, Cui Y, Klumpe S, Xiang Y, Erdmann PS, Jiang L. Membrane imaging in the plant endomembrane system. PLANT PHYSIOLOGY 2021; 185:562-576. [PMID: 33793889 PMCID: PMC8133680 DOI: 10.1093/plphys/kiaa040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 08/11/2020] [Indexed: 05/10/2023]
Abstract
Recent studies on membrane imaging in the plant endomembrane system by 2-D/3-D CLSM and TEM provide future perspectives of whole-cell ET and cryo-FIB-aided cryo-ET analysis.
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Affiliation(s)
- Zhiqi Liu
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Jiayang Gao
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Yong Cui
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Sven Klumpe
- Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
| | - Yun Xiang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Philipp S Erdmann
- Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany
| | - Liwen Jiang
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, Centre for Cell and Developmental Biology, The Chinese University of Hong Kong, Shatin, Hong Kong
- CUHK Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen 518057, China
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54
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DeVree BT, Steiner LM, Głazowska S, Ruhnow F, Herburger K, Persson S, Mravec J. Current and future advances in fluorescence-based visualization of plant cell wall components and cell wall biosynthetic machineries. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:78. [PMID: 33781321 PMCID: PMC8008654 DOI: 10.1186/s13068-021-01922-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 03/05/2021] [Indexed: 05/18/2023]
Abstract
Plant cell wall-derived biomass serves as a renewable source of energy and materials with increasing importance. The cell walls are biomacromolecular assemblies defined by a fine arrangement of different classes of polysaccharides, proteoglycans, and aromatic polymers and are one of the most complex structures in Nature. One of the most challenging tasks of cell biology and biomass biotechnology research is to image the structure and organization of this complex matrix, as well as to visualize the compartmentalized, multiplayer biosynthetic machineries that build the elaborate cell wall architecture. Better knowledge of the plant cells, cell walls, and whole tissue is essential for bioengineering efforts and for designing efficient strategies of industrial deconstruction of the cell wall-derived biomass and its saccharification. Cell wall-directed molecular probes and analysis by light microscopy, which is capable of imaging with a high level of specificity, little sample processing, and often in real time, are important tools to understand cell wall assemblies. This review provides a comprehensive overview about the possibilities for fluorescence label-based imaging techniques and a variety of probing methods, discussing both well-established and emerging tools. Examples of applications of these tools are provided. We also list and discuss the advantages and limitations of the methods. Specifically, we elaborate on what are the most important considerations when applying a particular technique for plants, the potential for future development, and how the plant cell wall field might be inspired by advances in the biomedical and general cell biology fields.
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Affiliation(s)
- Brian T DeVree
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
| | - Lisa M Steiner
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
| | - Sylwia Głazowska
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
| | - Felix Ruhnow
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
| | - Klaus Herburger
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
| | - Staffan Persson
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Jozef Mravec
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
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55
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Zhang X, Man Y, Zhuang X, Shen J, Zhang Y, Cui Y, Yu M, Xing J, Wang G, Lian N, Hu Z, Ma L, Shen W, Yang S, Xu H, Bian J, Jing Y, Li X, Li R, Mao T, Jiao Y, Sodmergen, Ren H, Lin J. Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques. SCIENCE CHINA-LIFE SCIENCES 2021; 64:1392-1422. [PMID: 33974222 DOI: 10.1007/s11427-020-1910-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 03/04/2021] [Indexed: 12/21/2022]
Abstract
In multicellular and even single-celled organisms, individual components are interconnected at multiscale levels to produce enormously complex biological networks that help these systems maintain homeostasis for development and environmental adaptation. Systems biology studies initially adopted network analysis to explore how relationships between individual components give rise to complex biological processes. Network analysis has been applied to dissect the complex connectivity of mammalian brains across different scales in time and space in The Human Brain Project. In plant science, network analysis has similarly been applied to study the connectivity of plant components at the molecular, subcellular, cellular, organic, and organism levels. Analysis of these multiscale networks contributes to our understanding of how genotype determines phenotype. In this review, we summarized the theoretical framework of plant multiscale networks and introduced studies investigating plant networks by various experimental and computational modalities. We next discussed the currently available analytic methodologies and multi-level imaging techniques used to map multiscale networks in plants. Finally, we highlighted some of the technical challenges and key questions remaining to be addressed in this emerging field.
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Affiliation(s)
- Xi Zhang
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Yi Man
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Xiaohong Zhuang
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, 999077, China
| | - Jinbo Shen
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Yi Zhang
- Key Laboratory of Cell Proliferation and Regulation Biology, Ministry of Education, College of Life Science, Beijing Normal University, Beijing, 100875, China
| | - Yaning Cui
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Meng Yu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Jingjing Xing
- Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng, 457004, China
| | - Guangchao Wang
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Na Lian
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Zijian Hu
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Lingyu Ma
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Weiwei Shen
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Shunyao Yang
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Huimin Xu
- College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Jiahui Bian
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Yanping Jing
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Xiaojuan Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Ruili Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Tonglin Mao
- State Key Laboratory of Plant Physiology and Biochemistry, Department of Plant Sciences, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Yuling Jiao
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and National Center for Plant Gene Research, Beijing, 100101, China
| | - Sodmergen
- Key Laboratory of Ministry of Education for Cell Proliferation and Differentiation, College of Life Sciences, Peking University, Beijing, 100871, China
| | - Haiyun Ren
- Key Laboratory of Cell Proliferation and Regulation Biology, Ministry of Education, College of Life Science, Beijing Normal University, Beijing, 100875, China
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China. .,College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
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56
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Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues. Nat Protoc 2021; 16:1600-1628. [PMID: 33627844 DOI: 10.1038/s41596-020-00471-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 11/24/2020] [Indexed: 01/31/2023]
Abstract
Super-resolution microscopy techniques have pushed the limit of optical imaging to unprecedented spatial resolutions. However, one of the frontiers in nanoscopy is its application to intact living organisms. Here we describe the implementation and application of super-resolution single-particle tracking photoactivated localization microscopy (sptPALM) to probe single-molecule dynamics of membrane proteins in live roots of the model plant Arabidopsis thaliana. We first discuss the advantages and limitations of sptPALM for studying the diffusion properties of membrane proteins and compare this to fluorescence recovery after photobleaching (FRAP) and fluorescence correlation spectroscopy (FCS). We describe the technical details for handling and imaging the samples for sptPALM, with a particular emphasis on the specificity of imaging plant cells, such as their thick cell walls or high degree of autofluorescence. We then provide a practical guide from data collection to image analyses. In particular, we introduce our sptPALM_viewer software and describe how to install and use it for analyzing sptPALM experiments. Finally, we report an R statistical analysis pipeline to analyze and compare sptPALM experiments. Altogether, this protocol should enable plant researchers to perform sptPALM using a benchmarked reproducible protocol. Routinely, the procedure takes 3-4 h of imaging followed by 3-4 d of image processing and data analysis.
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57
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Host Cell Wall Damage during Pathogen Infection: Mechanisms of Perception and Role in Plant-Pathogen Interactions. PLANTS 2021; 10:plants10020399. [PMID: 33669710 PMCID: PMC7921929 DOI: 10.3390/plants10020399] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 02/15/2021] [Accepted: 02/16/2021] [Indexed: 12/21/2022]
Abstract
The plant cell wall (CW) is a complex structure that acts as a mechanical barrier, restricting the access to most microbes. Phytopathogenic microorganisms can deploy an arsenal of CW-degrading enzymes (CWDEs) that are required for virulence. In turn, plants have evolved proteins able to inhibit the activity of specific microbial CWDEs, reducing CW damage and favoring the accumulation of CW-derived fragments that act as damage-associated molecular patterns (DAMPs) and trigger an immune response in the host. CW-derived DAMPs might be a component of the complex system of surveillance of CW integrity (CWI), that plants have evolved to detect changes in CW properties. Microbial CWDEs can activate the plant CWI maintenance system and induce compensatory responses to reinforce CWs during infection. Recent evidence indicates that the CWI surveillance system interacts in a complex way with the innate immune system to fine-tune downstream responses and strike a balance between defense and growth.
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58
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Raven JA. Determinants, and implications, of the shape and size of thylakoids and cristae. JOURNAL OF PLANT PHYSIOLOGY 2021; 257:153342. [PMID: 33385618 DOI: 10.1016/j.jplph.2020.153342] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 11/25/2020] [Accepted: 12/08/2020] [Indexed: 06/12/2023]
Abstract
Thylakoids are flattened sacs isolated from other membranes; cristae are attached to the rest of the inner mitochondrial membrane by the crista junction, but the crista lumen is separated from the intermembrane space. The shape of thylakoids and cristae involves membranes with small (5-30 nm) radii of curvature. While the mechanism of curvature is not entirely clear, it seems to be largely a function of Curt proteins in thylakoids and Mitochondrial Organising Site and Crista Organising Centre proteins and oligomeric FOF1 ATP synthase in cristae. A subordinate, or minimal, role is attributable to lipids with areas of their head group area greater (convex leaflet) or smaller (concave leaflet) than the area of the lipid tail; examples of the latter group are monogalactosyldiglyceride in thylakoids and cardiolipin in cristae. The volume per unit area on the lumen side of the membrane is less than that of the chloroplast stroma or cyanobacterial cytosol for thylakoids, and mitochondrial matrix for cristae. A low volume per unit area of thylakoids and cristae means a small lumen width that is the average of wider spaces between lipid parts of the membranes and the narrower gaps dominated by extra-membrane components of transmembrane proteins. These structural constraints have important implications for the movement of the electron carriers plastocyanin and cytochrome c6 (thylakoids) and cytochrome c (cristae) and hence the separation of the membrane-associated electron donors to, and electron acceptors from, these water-soluble electron carriers. The donor/acceptor pairs, are the cytochrome fb6Fenh complex and P700+ in thylakoids, and Complex III and Complex IV of cristae. The other energy flux parallel to the membranes is that of the proton motive force generated by redox-powered H+ pumps into the lumen to the proton motive force use in ATP synthesis by H+ flux from the lumen through the ATP synthase. For both the electron transport and proton motive force movement, concentration differences of reduced and oxidised electron carriers and protonated and deprotonated pH buffers are involved. The need for diffusion along a congested route of these energy transfer agents may limit the separation of sources and sinks parallel to the membranes of thylakoids and cristae.
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Affiliation(s)
- John A Raven
- Division of Plant Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK; University of Technology, Sydney, Climate Change Cluster, Faculty of Science, Sydney, Ultimo, NSW, 2007, Australia; School of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia.
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59
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Raven JA, Beilby MJ. Protein assemblages and tight curves in the plasma membranes of photosynthetic eukaryotes. JOURNAL OF PLANT PHYSIOLOGY 2021; 256:153330. [PMID: 33290987 DOI: 10.1016/j.jplph.2020.153330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Accepted: 11/17/2020] [Indexed: 06/12/2023]
Abstract
Protein assemblages in the plasma membrane of photosynthetic organisms include the polar occurrence of PIN proteins permitting polar auxin transport in embryophytes and Charales, and the H+ ATPase in acid zones of Charales cells. Production of small radius of curvature membrane areas in transfer cells and charasomes is incompletely understood.
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Affiliation(s)
- John A Raven
- Division of Plant Science, University of Dundee at the James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK; University of Technology, Sydney, Climate Change Cluster, Faculty of Science, Sydney, Ultimo NSW 2007, Australia; School of Biological Sciences, University of Western Australia, Crawley, WA 6009, Australia.
| | - Mary J Beilby
- School of Physics, University of NSW, Kensington, NSW 2052, Australia
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60
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McKenna JF, Gumber HK, Turpin ZM, Jalovec AM, Kartick AC, Graumann K, Bass HW. Maize ( Zea mays L.) Nucleoskeletal Proteins Regulate Nuclear Envelope Remodeling and Function in Stomatal Complex Development and Pollen Viability. FRONTIERS IN PLANT SCIENCE 2021; 12:645218. [PMID: 33679862 PMCID: PMC7925898 DOI: 10.3389/fpls.2021.645218] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Accepted: 01/27/2021] [Indexed: 05/19/2023]
Abstract
In eukaryotes, the nuclear envelope (NE) encloses chromatin and separates it from the rest of the cell. The Linker of Nucleoskeleton and Cytoskeleton (LINC) complex physically bridges across the NE, linking nuclear and cytoplasmic components. In plants, these LINC complexes are beginning to be ascribed roles in cellular and nuclear functions, including chromatin organization, regulation of nuclei shape and movement, and cell division. Homologs of core LINC components, KASH and SUN proteins, have previously been identified in maize. Here, we characterized the presumed LINC-associated maize nucleoskeletal proteins NCH1 and NCH2, homologous to members of the plant NMCP/CRWN family, and MKAKU41, homologous to AtKAKU4. All three proteins localized to the nuclear periphery when transiently and heterologously expressed as fluorescent protein fusions in Nicotiana benthamiana. Overexpression of MKAKU41 caused dramatic changes in the organization of the nuclear periphery, including nuclear invaginations that stained positive for non-nucleoplasmic markers of the inner and outer NE membranes, and the ER. The severity of these invaginations was altered by changes in LINC connections and the actin cytoskeleton. In maize, MKAKU41 appeared to share genetic functions with other LINC components, including control of nuclei shape, stomatal complex development, and pollen viability. Overall, our data show that NCH1, NCH2, and MKAKU41 have characteristic properties of LINC-associated plant nucleoskeletal proteins, including interactions with NE components suggestive of functions at the nuclear periphery that impact the overall nuclear architecture.
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Affiliation(s)
- Joseph F. McKenna
- School of Life Sciences, University of Warwick, Coventry, United Kingdom
| | - Hardeep K. Gumber
- Department of Biological Science, Florida State University, Tallahassee, FL, United States
| | - Zachary M. Turpin
- Department of Biological Science, Florida State University, Tallahassee, FL, United States
| | - Alexis M. Jalovec
- Department of Biological Science, Florida State University, Tallahassee, FL, United States
| | - Andre C. Kartick
- Department of Biological Science, Florida State University, Tallahassee, FL, United States
| | - Katja Graumann
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford, United Kingdom
- *Correspondence: Katja Graumann, ; Hank W. Bass,
| | - Hank W. Bass
- Department of Biological Science, Florida State University, Tallahassee, FL, United States
- *Correspondence: Katja Graumann, ; Hank W. Bass,
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61
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Li H, von Wangenheim D, Zhang X, Tan S, Darwish‐Miranda N, Naramoto S, Wabnik K, De Rycke R, Kaufmann WA, Gütl D, Tejos R, Grones P, Ke M, Chen X, Dettmer J, Friml J. Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2021; 229:351-369. [PMID: 32810889 PMCID: PMC7984064 DOI: 10.1111/nph.16887] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 08/07/2020] [Indexed: 05/12/2023]
Abstract
Cell and tissue polarization is fundamental for plant growth and morphogenesis. The polar, cellular localization of Arabidopsis PIN-FORMED (PIN) proteins is crucial for their function in directional auxin transport. The clustering of PIN polar cargoes within the plasma membrane has been proposed to be important for the maintenance of their polar distribution. However, the more detailed features of PIN clusters and the cellular requirements of cargo clustering remain unclear. Here, we characterized PIN clusters in detail by means of multiple advanced microscopy and quantification methods, such as 3D quantitative imaging or freeze-fracture replica labeling. The size and aggregation types of PIN clusters were determined by electron microscopy at the nanometer level at different polar domains and at different developmental stages, revealing a strong preference for clustering at the polar domains. Pharmacological and genetic studies revealed that PIN clusters depend on phosphoinositol pathways, cytoskeletal structures and specific cell-wall components as well as connections between the cell wall and the plasma membrane. This study identifies the role of different cellular processes and structures in polar cargo clustering and provides initial mechanistic insight into the maintenance of polarity in plants and other systems.
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Affiliation(s)
- Hongjiang Li
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
- Department of Plant Systems Biology, VIB and Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
| | - Daniel von Wangenheim
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
- Centre for Plant Integrative BiologySchool of BiosciencesUniversity of NottinghamLoughboroughLE12 5RDUK
| | - Xixi Zhang
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
- Department of Applied Genetics and Cell BiologyUniversity of Natural Resources and Life Sciences (BOKU)Vienna1190Austria
| | - Shutang Tan
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
| | | | - Satoshi Naramoto
- Graduate School of Life SciencesTohoku UniversitySendai980‐8577Japan
| | - Krzysztof Wabnik
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
- Department of Plant Systems Biology, VIB and Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
| | - Riet De Rycke
- Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
- VIB Center for Plant Systems BiologyGhent9052Belgium
- Expertise Centre for Transmission Electron Microscopy and VIB BioImaging CoreGhent UniversityGhent9052Belgium
| | - Walter A. Kaufmann
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
| | - Daniel Gütl
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
| | - Ricardo Tejos
- Department of Plant Systems Biology, VIB and Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
- Departamento de BiologíaFacultad de CienciasCentro de Biología Molecular VegetalUniversidad de ChileSantiago7800003Chile
| | - Peter Grones
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
| | - Meiyu Ke
- Haixia Institute of Science and TechnologyFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Xu Chen
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
- Department of Plant Systems Biology, VIB and Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
- Haixia Institute of Science and TechnologyFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Jan Dettmer
- Department of Plant Systems Biology, VIB and Department of Plant Biotechnology and BioinformaticsGhent UniversityGhent9052Belgium
| | - Jiří Friml
- Institute of Science and Technology Austria (IST Austria)Klosterneuburg3400Austria
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62
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Ke M, Ma Z, Wang D, Sun Y, Wen C, Huang D, Chen Z, Yang L, Tan S, Li R, Friml J, Miao Y, Chen X. Salicylic acid regulates PIN2 auxin transporter hyperclustering and root gravitropic growth via Remorin-dependent lipid nanodomain organisation in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2021; 229:963-978. [PMID: 32901934 PMCID: PMC7821329 DOI: 10.1111/nph.16915] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 08/23/2020] [Indexed: 05/20/2023]
Abstract
To adapt to the diverse array of biotic and abiotic cues, plants have evolved sophisticated mechanisms to sense changes in environmental conditions and modulate their growth. Growth-promoting hormones and defence signalling fine tune plant development antagonistically. During host-pathogen interactions, this defence-growth trade-off is mediated by the counteractive effects of the defence hormone salicylic acid (SA) and the growth hormone auxin. Here we revealed an underlying mechanism of SA regulating auxin signalling by constraining the plasma membrane dynamics of PIN2 auxin efflux transporter in Arabidopsis thaliana roots. The lateral diffusion of PIN2 proteins is constrained by SA signalling, during which PIN2 proteins are condensed into hyperclusters depending on REM1.2-mediated nanodomain compartmentalisation. Furthermore, membrane nanodomain compartmentalisation by SA or Remorin (REM) assembly significantly suppressed clathrin-mediated endocytosis. Consequently, SA-induced heterogeneous surface condensation disrupted asymmetric auxin distribution and the resultant gravitropic response. Our results demonstrated a defence-growth trade-off mechanism by which SA signalling crosstalked with auxin transport by concentrating membrane-resident PIN2 into heterogeneous compartments.
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Affiliation(s)
- Meiyu Ke
- College of Life Science and Fujian Provincial Key Laboratory of Haixia Applied Plant Systems BiologyFujian Agriculture and Forestry UniversityFuzhou350002China
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Zhiming Ma
- School of Biological SciencesNanyang Technological UniversitySingapore637551Singapore
| | - Deyan Wang
- College of Life Science and Fujian Provincial Key Laboratory of Haixia Applied Plant Systems BiologyFujian Agriculture and Forestry UniversityFuzhou350002China
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Yanbiao Sun
- College of Life Science and Fujian Provincial Key Laboratory of Haixia Applied Plant Systems BiologyFujian Agriculture and Forestry UniversityFuzhou350002China
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Chenjin Wen
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Dingquan Huang
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Zichen Chen
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
| | - Liang Yang
- School of Biological SciencesNanyang Technological UniversitySingapore637551Singapore
- Singapore Centre for Environmental Life Sciences EngineeringNanyang Technological UniversitySingapore637551Singapore
| | - Shutang Tan
- Institute of Science and Technology Austria (IST Austria)Am Campus 1Klosterneuburg3400Austria
| | - Ruixi Li
- Department of BiologySouthern University of Science and TechnologyShenzhen518055China
| | - Jiří Friml
- Institute of Science and Technology Austria (IST Austria)Am Campus 1Klosterneuburg3400Austria
| | - Yansong Miao
- School of Biological SciencesNanyang Technological UniversitySingapore637551Singapore
| | - Xu Chen
- Haixia Institute of Science and TechnologyHorticultural Plant Biology and Metabolomics CentreFujian Agriculture and Forestry UniversityFuzhou350002China
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63
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Multiscale and multidisciplinary approach to understanding nanoparticle transport in plants. Curr Opin Chem Eng 2020. [DOI: 10.1016/j.coche.2020.100659] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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64
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Martin-Fernandez ML. A brief history of the octopus imaging facility to celebrate its 10th anniversary. J Microsc 2020; 281:3-15. [PMID: 33111321 DOI: 10.1111/jmi.12974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 10/19/2020] [Accepted: 10/23/2020] [Indexed: 11/27/2022]
Abstract
Octopus (Optics Clustered to OutPut Unique Solutions) celebrated in June 2020 its 10th birthday. Based at Harwell, near Oxford, Octopus is an open access, peer reviewed, national imaging facility that offers successful U.K. applicants supported access to single molecule imaging, confocal microscopy, several flavours of superresolution imaging, light sheet microscopy, optical trapping and cryoscanning electron microscopy. Managed by a multidisciplinary team, Octopus has so far assisted >100 groups of U.K. and international researchers. Cross-fertilisation across fields proved to be a strong propeller of success underpinned by combining access to top-end instrumentation with a strong programme of imaging hardware and software developments. How Octopus was born, and highlights of the multidisciplinary output produced during its 10-year journey are reviewed below, with the aim of celebrating a myriad of collaborations with the U.K. scientific community, and reflecting on their scientific and societal impact.
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Affiliation(s)
- M L Martin-Fernandez
- Central Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell, Didcot, Oxford, U.K
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65
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Galindo-Trigo S, Blümke P, Simon R, Butenko MA. Emerging mechanisms to fine-tune receptor kinase signaling specificity. CURRENT OPINION IN PLANT BIOLOGY 2020; 57:41-51. [PMID: 32623322 DOI: 10.1016/j.pbi.2020.05.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Revised: 05/02/2020] [Accepted: 05/29/2020] [Indexed: 06/11/2023]
Abstract
Organisms need to constantly inform their cellular machinery about the biochemical and physical status of their surroundings to adapt and thrive. While some external signals are also sensed intracellularly, a considerable share of external information is registered already at the plasma membrane (PM). Receptor kinases (RKs) are crucial for plant cells to integrate such cues from the environment, from microbes, or from other cells to coordinate their physiological response and their development. Early studies on RK signaling depicted the path from external signal to internal response in a linear fashion, but recent findings show that these cellular information highways are highly interconnected and pass signals through molecular intersections. In this review, we first discuss how individual RKs simultaneously contribute to the transduction and deconvolution of a multitude of signals by controlled assembly into diverse RK complexes, exemplified by FERONIA signaling versatility. We then elaborate on how cells can exert highly localized control over the assembly, interaction and composition of such complexes in order to attain essential cellular output specificity.
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Affiliation(s)
- Sergio Galindo-Trigo
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, 0316 Oslo, Norway
| | - Patrick Blümke
- Institute for Developmental Genetics and Cluster of Excellence on Plant Sciences, Heinrich Heine University, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Rüdiger Simon
- Institute for Developmental Genetics and Cluster of Excellence on Plant Sciences, Heinrich Heine University, Universitätsstraße 1, 40225 Düsseldorf, Germany
| | - Melinka A Butenko
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, 0316 Oslo, Norway.
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66
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Intercellular trafficking via plasmodesmata: molecular layers of complexity. Cell Mol Life Sci 2020; 78:799-816. [PMID: 32920696 PMCID: PMC7897608 DOI: 10.1007/s00018-020-03622-8] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 07/28/2020] [Accepted: 08/13/2020] [Indexed: 12/12/2022]
Abstract
Plasmodesmata are intercellular pores connecting together most plant cells. These structures consist of a central constricted form of the endoplasmic reticulum, encircled by some cytoplasmic space, in turn delimited by the plasma membrane, itself ultimately surrounded by the cell wall. The presence and structure of plasmodesmata create multiple routes for intercellular trafficking of a large spectrum of molecules (encompassing RNAs, proteins, hormones and metabolites) and also enable local signalling events. Movement across plasmodesmata is finely controlled in order to balance processes requiring communication with those necessitating symplastic isolation. Here, we describe the identities and roles of the molecular components (specific sets of lipids, proteins and wall polysaccharides) that shape and define plasmodesmata structural and functional domains. We highlight the extensive and dynamic interactions that exist between the plasma/endoplasmic reticulum membranes, cytoplasm and cell wall domains, binding them together to effectively define plasmodesmata shapes and purposes.
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67
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Pan X, Fang L, Liu J, Senay-Aras B, Lin W, Zheng S, Zhang T, Guo J, Manor U, Van Norman J, Chen W, Yang Z. Auxin-induced signaling protein nanoclustering contributes to cell polarity formation. Nat Commun 2020; 11:3914. [PMID: 32764676 PMCID: PMC7410848 DOI: 10.1038/s41467-020-17602-w] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 07/05/2020] [Indexed: 11/25/2022] Open
Abstract
Cell polarity is fundamental to the development of both eukaryotes and prokaryotes, yet the mechanisms behind its formation are not well understood. Here we found that, phytohormone auxin-induced, sterol-dependent nanoclustering of cell surface transmembrane receptor kinase 1 (TMK1) is critical for the formation of polarized domains at the plasma membrane (PM) during the morphogenesis of cotyledon pavement cells (PC) in Arabidopsis. Auxin-induced TMK1 nanoclustering stabilizes flotillin1-associated ordered nanodomains, which in turn promote the nanoclustering of ROP6 GTPase that acts downstream of TMK1 to regulate cortical microtubule organization. In turn, cortical microtubules further stabilize TMK1- and flotillin1-containing nanoclusters at the PM. Hence, we propose a new paradigm for polarity formation: A diffusive signal triggers cell polarization by promoting cell surface receptor-mediated nanoclustering of signaling components and cytoskeleton-mediated positive feedback that reinforces these nanodomains into polarized domains.
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Affiliation(s)
- Xue Pan
- FAFU-UCR Joint Center for Horticultural Biology and Metabolomics Center, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
- Center for Plant Cell Biology, Institute of Integrative Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA
| | - Linjing Fang
- Waitt Advanced Biophotonics Center, The Salk Institute for Biological Studies, 10010 N Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Jianfeng Liu
- Center for Plant Cell Biology, Institute of Integrative Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA
| | - Betul Senay-Aras
- Department of Mathematics, University of California, Riverside, CA, 92521, USA
| | - Wenwei Lin
- FAFU-UCR Joint Center for Horticultural Biology and Metabolomics Center, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
- Center for Plant Cell Biology, Institute of Integrative Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA
| | - Shuan Zheng
- FAFU-UCR Joint Center for Horticultural Biology and Metabolomics Center, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Tong Zhang
- Waitt Advanced Biophotonics Center, The Salk Institute for Biological Studies, 10010 N Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Jingzhe Guo
- Center for Plant Cell Biology, Institute of Integrative Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA
| | - Uri Manor
- Waitt Advanced Biophotonics Center, The Salk Institute for Biological Studies, 10010 N Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Jaimie Van Norman
- Center for Plant Cell Biology, Institute of Integrative Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA
| | - Weitao Chen
- Department of Mathematics, University of California, Riverside, CA, 92521, USA.
| | - Zhenbiao Yang
- Center for Plant Cell Biology, Institute of Integrative Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA.
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68
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Zang J, Zhang T, Hussey PJ, Wang P. Light microscopy of the endoplasmic reticulum-membrane contact sites in plants. J Microsc 2020; 280:134-139. [PMID: 32497309 DOI: 10.1111/jmi.12934] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 05/31/2020] [Accepted: 06/02/2020] [Indexed: 12/14/2022]
Abstract
The existence of membrane contact sites (MCS) has been reported in different systems in the past decade, and their importance has been recognised by the cell biology community. Amongst all endomembrane structures, the endoplasmic reticulum (ER) plays vital roles in organising the organelle interaction network with the plasma membrane (PM), Golgi bodies, mitochondria, plastids, endosomes and autophagosomes. A number of methods have been used to study the establishment and functions of these interactions, among them, light microscopy appears to be one of the most effective approaches. Here, we present an overview of the discovery of ER-PM contact sites, and highlight the latest developments in light microscopical-based techniques that can be used for their study.
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Affiliation(s)
- J Zang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - T Zhang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, Hubei Province, China
| | - P J Hussey
- Department of Biosciences, Durham University, Durham, U.K.,Faculty of Science, Department of Experimental Plant Biology, Charles University, Praha 2, Czechia
| | - P Wang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, Hubei Province, China
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69
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Schlöffel MA, Salzer A, Wan WL, van Wijk R, Del Corvo R, Šemanjski M, Symeonidi E, Slaby P, Kilian J, Maček B, Munnik T, Gust AA. The BIR2/BIR3-Associated Phospholipase Dγ1 Negatively Regulates Plant Immunity. PLANT PHYSIOLOGY 2020; 183:371-384. [PMID: 32152212 PMCID: PMC7210654 DOI: 10.1104/pp.19.01292] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 02/20/2020] [Indexed: 05/05/2023]
Abstract
Plants have evolved effective strategies to defend themselves against pathogen invasion. Starting from the plasma membrane with the recognition of microbe-associated molecular patterns (MAMPs) via pattern recognition receptors, internal cellular signaling pathways are induced to ultimately fend off the attack. Phospholipase D (PLD) hydrolyzes membrane phospholipids to produce phosphatidic acid (PA), which has been proposed to play a second messenger role in immunity. The Arabidopsis (Arabidopsis thaliana) PLD family consists of 12 members, and for some of these, a specific function in resistance toward a subset of pathogens has been shown. We demonstrate here that Arabidopsis PLDγ1, but not its close homologs PLDγ2 and PLDγ3, is specifically involved in plant immunity. Genetic inactivation of PLDγ1 resulted in increased resistance toward the virulent bacterium Pseudomonas syringae pv. tomato DC3000 and the necrotrophic fungus Botrytis cinerea As pldγ1 mutant plants responded with elevated levels of reactive oxygen species to MAMP treatment, a negative regulatory function for this PLD isoform is proposed. Importantly, PA levels in pldγ1 mutants were not affected compared to stressed wild-type plants, suggesting that alterations in PA levels are not likely the cause for the enhanced immunity in the pldγ1 line. Instead, the plasma-membrane-attached PLDγ1 protein colocalized and associated with the BAK1-INTERACTING RECEPTOR-LIKE KINASES BIR2 and BIR3, which are known negative regulators of pattern-triggered immunity. Moreover, complex formation of PLDγ1 and BIR2 was further promoted upon MAMP treatment. Hence, we propose that PLDγ1 acts as a negative regulator of plant immune responses in complex with immunity-related proteins BIR2 and BIR3.
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Affiliation(s)
- Maria A Schlöffel
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Andrea Salzer
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Wei-Lin Wan
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Ringo van Wijk
- Swammerdam Institute for Life Sciences, Section Plant Cell Biology, University of Amsterdam, 1098 XH Amsterdam, The Netherlands
| | - Raffaele Del Corvo
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Maja Šemanjski
- Proteome Center Tübingen, University of Tübingen, 72076 Tübingen, Germany
| | - Efthymia Symeonidi
- Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany
| | - Peter Slaby
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Joachim Kilian
- Analytics Unit, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Boris Maček
- Proteome Center Tübingen, University of Tübingen, 72076 Tübingen, Germany
| | - Teun Munnik
- Swammerdam Institute for Life Sciences, Section Plant Cell Biology, University of Amsterdam, 1098 XH Amsterdam, The Netherlands
| | - Andrea A Gust
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
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70
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Abstract
Anionic phospholipids, which include phosphatidic acid, phosphatidylserine, and phosphoinositides, represent a small percentage of membrane lipids. They are able to modulate the physical properties of membranes, such as their surface charges, curvature, or clustering of proteins. Moreover, by mediating interactions with numerous membrane-associated proteins, they are key components in the establishment of organelle identity and dynamics. Finally, anionic lipids also act as signaling molecules, as they are rapidly produced or interconverted by a set of dedicated enzymes. As such, anionic lipids are major regulators of many fundamental cellular processes, including cell signaling, cell division, membrane trafficking, cell growth, and gene expression. In this review, we describe the functions of anionic lipids from a cellular perspective. Using the localization of each anionic lipid and its related metabolic enzymes as starting points, we summarize their roles within the different compartments of the endomembrane system and address their associated developmental and physiological consequences.
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Affiliation(s)
- Lise C Noack
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, École Normale Supérieure (ENS) de Lyon, L'Université Claude Bernard (UCB) Lyon 1, CNRS, INRAE, 69342 Lyon, France; ,
| | - Yvon Jaillais
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, École Normale Supérieure (ENS) de Lyon, L'Université Claude Bernard (UCB) Lyon 1, CNRS, INRAE, 69342 Lyon, France; ,
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71
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Jaillais Y, Ott T. The Nanoscale Organization of the Plasma Membrane and Its Importance in Signaling: A Proteolipid Perspective. PLANT PHYSIOLOGY 2020; 182:1682-1696. [PMID: 31857424 PMCID: PMC7140965 DOI: 10.1104/pp.19.01349] [Citation(s) in RCA: 84] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 12/09/2019] [Indexed: 05/12/2023]
Abstract
Plasma membranes provide a highly selective environment for a large number of transmembrane and membrane-associated proteins. Whereas lateral movement of proteins in this lipid bilayer is possible, it is rather limited in turgid and cell wall-shielded plant cells. However, membrane-resident signaling processes occur on subsecond scales that cannot be explained by simple diffusion models. Accordingly, several receptors and other membrane-associated proteins are organized and functional in membrane nanodomains. Although the general presence of membrane nanodomains has become widely accepted as fact, fundamental functional aspects, the roles of individual lipid species and their interplay with proteins, and aspects of nanodomain maintenance and persistence remain poorly understood. Here, we review the current knowledge of nanodomain organization and function, with a particular focus on signaling processes involving proteins, lipids, and their interactions. Furthermore, we propose new and hypothetical aspects of plant membrane biology that we consider important for future research.
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Affiliation(s)
- Yvon Jaillais
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, F-69342 Lyon, France
| | - Thomas Ott
- Cell Biology, Faculty of Biology, Centre for Integrative Biological Signalling Studies (CIBSS), University of Freiburg, 79104 Freiburg, Germany
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72
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Albert I, Hua C, Nürnberger T, Pruitt RN, Zhang L. Surface Sensor Systems in Plant Immunity. PLANT PHYSIOLOGY 2020; 182:1582-1596. [PMID: 31822506 PMCID: PMC7140916 DOI: 10.1104/pp.19.01299] [Citation(s) in RCA: 103] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 11/21/2019] [Indexed: 05/04/2023]
Abstract
Protein complexes at the cell surface facilitate the detection of danger signals from diverse pathogens and initiate a series of complex intracellular signaling events that result in various immune responses.
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Affiliation(s)
- Isabell Albert
- Department of Plant Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, D-72076 Tübingen, Germany
| | - Chenlei Hua
- Department of Plant Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, D-72076 Tübingen, Germany
| | - Thorsten Nürnberger
- Department of Plant Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, D-72076 Tübingen, Germany
- Department of Biochemistry, University of Johannesburg, Johannesburg 2001, South Africa
| | - Rory N Pruitt
- Department of Plant Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, D-72076 Tübingen, Germany
| | - Lisha Zhang
- Department of Plant Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University, D-72076 Tübingen, Germany
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73
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Pain C, Kriechbaumer V. Defining the dance: quantification and classification of endoplasmic reticulum dynamics. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:1757-1762. [PMID: 31811712 PMCID: PMC7094074 DOI: 10.1093/jxb/erz543] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The availability of quantification methods for subcellular organelle dynamic analysis has increased rapidly over the last 20 years. The application of these techniques to contiguous subcellular structures that exhibit dynamic remodelling over a range of scales and orientations is challenging, as quantification of 'movement' rarely corresponds to traditional, qualitative classifications of types of organelle movement. The plant endoplasmic reticulum represents a particular challenge for dynamic quantification as it itself is an entirely contiguous organelle that is in a constant state of flux and gross remodelling, controlled by the actinomyosin cytoskeleton.
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Affiliation(s)
- Charlotte Pain
- Oxford Brookes University, Faculty of Health and Life Sciences, Gipsy Lane, Plant Cell Biology, Oxford, UK
| | - Verena Kriechbaumer
- Oxford Brookes University, Faculty of Health and Life Sciences, Gipsy Lane, Plant Cell Biology, Oxford, UK
- Correspondence:
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74
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Wolf S. Deviating from the Beaten Track: New Twists in Brassinosteroid Receptor Function. Int J Mol Sci 2020; 21:ijms21051561. [PMID: 32106564 PMCID: PMC7084826 DOI: 10.3390/ijms21051561] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 02/21/2020] [Accepted: 02/22/2020] [Indexed: 12/15/2022] Open
Abstract
A key feature of plants is their plastic development tailored to the environmental conditions. To integrate environmental signals with genetic growth regulatory programs, plants rely on a number of hormonal pathways, which are intimately connected at multiple levels. Brassinosteroids (BRs), a class of plant sterol hormones, are perceived by cell surface receptors and trigger responses instrumental in tailoring developmental programs to environmental cues. Arguably, BR signalling is one of the best-characterized plant signalling pathways, and the molecular composition of the core signal transduction cascade seems clear. However, BR research continues to reveal new twists to re-shape our view on this key signalling circuit. Here, exciting novel findings pointing to the plasma membrane as a key site for BR signalling modulation and integration with other pathways are reviewed and new inputs into the BR signalling pathway and emerging “non-canonical” functions of the BR receptor complex are highlighted. Together, this new evidence underscores the complexity of plant signalling integration and serves as a reminder that highly-interconnected signalling pathways frequently comprise non-linear aspects which are difficult to convey in classical conceptual models.
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Affiliation(s)
- Sebastian Wolf
- Centre for Organismal Studies (COS) Heidelberg, INF230, 69120 Heidelberg, Germany
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75
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Daněk M, Angelini J, Malínská K, Andrejch J, Amlerová Z, Kocourková D, Brouzdová J, Valentová O, Martinec J, Petrášek J. Cell wall contributes to the stability of plasma membrane nanodomain organization of Arabidopsis thaliana FLOTILLIN2 and HYPERSENSITIVE INDUCED REACTION1 proteins. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 101:619-636. [PMID: 31610051 DOI: 10.1111/tpj.14566] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 09/11/2019] [Accepted: 09/17/2019] [Indexed: 05/24/2023]
Abstract
Current models of plasma membrane (PM) postulate its organization in various nano- and micro-domains with distinct protein and lipid composition. While metazoan PM nanodomains usually display high lateral mobility, the dynamics of plant nanodomains is often highly spatially restricted. Here we have focused on the determination of the PM distribution in nanodomains for Arabidopsis thaliana flotillin (AtFLOT) and hypersensitive induced reaction proteins (AtHIR), previously shown to be involved in response to extracellular stimuli. Using in vivo laser scanning and spinning disc confocal microscopy in Arabidopsis thaliana we present here their nanodomain localization in various epidermal cell types. Fluorescence recovery after photobleaching (FRAP) and kymographic analysis revealed that PM-associated AtFLOTs contain significantly higher immobile fraction than AtHIRs. In addition, much lower immobile fractions have been found in tonoplast pool of AtHIR3. Although members of both groups of proteins were spatially restricted in their PM distribution by corrals co-aligning with microtubules (MTs), pharmacological treatments showed no or very low role of actin and microtubular cytoskeleton for clustering of AtFLOT and AtHIR into nanodomains. Finally, pharmacological alteration of cell wall (CW) synthesis and structure resulted in changes in lateral mobility of AtFLOT2 and AtHIR1. Accordingly, partial enzymatic CW removal increased the overall dynamics as well as individual nanodomain mobility of these two proteins. Such structural links to CW could play an important role in their correct positioning during PM communication with extracellular environment.
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Affiliation(s)
- Michal Daněk
- Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02, Praha 6, Czech Republic
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44, Prague 2, Czech Republic
| | - Jindřiška Angelini
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28, Prague 6, Czech Republic
| | - Kateřina Malínská
- Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02, Praha 6, Czech Republic
| | - Jan Andrejch
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28, Prague 6, Czech Republic
| | - Zuzana Amlerová
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28, Prague 6, Czech Republic
| | - Daniela Kocourková
- Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02, Praha 6, Czech Republic
| | - Jitka Brouzdová
- Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02, Praha 6, Czech Republic
| | - Olga Valentová
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28, Prague 6, Czech Republic
| | - Jan Martinec
- Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02, Praha 6, Czech Republic
| | - Jan Petrášek
- Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02, Praha 6, Czech Republic
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44, Prague 2, Czech Republic
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Rui Y, Dinneny JR. A wall with integrity: surveillance and maintenance of the plant cell wall under stress. THE NEW PHYTOLOGIST 2020; 225:1428-1439. [PMID: 31486535 DOI: 10.1111/nph.16166] [Citation(s) in RCA: 143] [Impact Index Per Article: 35.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 08/16/2019] [Indexed: 05/21/2023]
Abstract
The structural and functional integrity of the cell wall needs to be constantly monitored and fine-tuned to allow for growth while preventing mechanical failure. Many studies have advanced our understanding of the pathways that contribute to cell wall biosynthesis and how these pathways are regulated by external and internal cues. Recent evidence also supports a model in which certain aspects of the wall itself may act as growth-regulating signals. Molecular components of the signaling pathways that sense and maintain cell wall integrity have begun to be revealed, including signals arising in the wall, sensors that detect changes at the cell surface, and downstream signal transduction modules. Abiotic and biotic stress conditions provide new contexts for the study of cell wall integrity, but the nature and consequences of wall disruptions due to various stressors require further investigation. A deeper understanding of cell wall signaling will provide insights into the growth regulatory mechanisms that allow plants to survive in changing environments.
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Affiliation(s)
- Yue Rui
- Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA, 94305, USA
- Department of Plant Biology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA
| | - José R Dinneny
- Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA, 94305, USA
- Department of Plant Biology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA
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