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Abscisic Acid Biosynthesis and Signaling in Plants: Key Targets to Improve Water Use Efficiency and Drought Tolerance. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10186322] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The observation of a much-improved fitness of wild-type plants over abscisic acid (ABA)-deficient mutants during drought has led researchers from all over to world to perform experiments aiming at a better understanding of how this hormone modulates the physiology of plants under water-limited conditions. More recently, several promising approaches manipulating ABA biosynthesis and signaling have been explored to improve water use efficiency and confer drought tolerance to major crop species. Here, we review recent progress made in the last decade on (i) ABA biosynthesis, (ii) the roles of ABA on plant-water relations and on primary and secondary metabolisms during drought, and (iii) the regulation of ABA levels and perception to improve water use efficiency and drought tolerance in crop species.
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Sengupta S, Nag Chaudhuri R. ABI3 plays a role in de-novo root regeneration from Arabidopsis thaliana callus cells. PLANT SIGNALING & BEHAVIOR 2020; 15:1794147. [PMID: 32662721 PMCID: PMC8550280 DOI: 10.1080/15592324.2020.1794147] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 07/03/2020] [Accepted: 07/04/2020] [Indexed: 05/27/2023]
Abstract
Developmental plasticity and the ability to regenerate organs during the life cycle are a signature feature of plant system. De novo organogenesis is a common mode of plant regeneration and may occur directly from the explant or indirectly via callus formation. It is now evident that callus formation occurs through the root development pathway. In fact, callus cells behave like a group of root primordium cells that are under the control of exogenous auxin. Presence or absence of auxin decides the subsequent fate of these cells. While in presence of external supplementation of auxin they are maintained as root primordia cells, absence of exogenous auxin induces the callus cells into patterning, differentiation and finally root emergence. Here we show that in absence of functional ABI3, a prominent member of the B3 superfamily of transcription factors, root regeneration is compromised in Arabidopsis callus cells. In culture medium free of any exogenous hormone supplementation, while adventitious root emergence and growth was prominently observed in wild type cells, no such features were observed in abi3-6 cells. Expression of auxin-responsive AUX1 and GH3 genes was significantly reduced in abi3-6 cells, indicating that auxin levels or distribution may be altered in absence of ABI3.
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Affiliation(s)
- Sourabh Sengupta
- Department of Biotechnology, St. Xavier’s College, Kolkata, India
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Yang L, Jiang Z, Jing Y, Lin R. PIF1 and RVE1 form a transcriptional feedback loop to control light-mediated seed germination in Arabidopsis. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2020; 62:1372-1384. [PMID: 32277734 DOI: 10.1111/jipb.12938] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2020] [Accepted: 04/09/2020] [Indexed: 05/22/2023]
Abstract
The phytochrome B (phyB) photoreceptor plays a major role that inputs light signals to regulate seed dormancy and germination. PHYTOCHROME-INTERACTING FACTOR1 (PIF1) is a key transcription factor repressing phyB-mediated seed germination, while REVEILLE1 (RVE1) factor functions as a curial regulator in controlling both seed dormancy and germination. However, the relationship between the PIF1- and RVE1-modulated signaling pathways remains mostly unknown. Here, we find that PIF1 physically interacts with RVE1. Genetic analysis indicates that RVE1 inhibition on seed germination requires PIF1; reciprocally, the repressive effect of PIF1 is partially dependent on RVE1. Strikingly, PIF1 and RVE1 directly bind to the promoter and activate the expression of each other. Furthermore, PIF1 and RVE1 coordinately regulate the transcription of many downstream genes involved in abscisic acid and gibberellin pathways. Moreover, PIF1 enhances the DNA-binding ability and transcriptional repression activity of RVE1 in regulating GIBBERELLIN 3-OXIDASE2, and RVE1 promotes PIF1's DNA-binding ability in modulating ABSCISIC ACID-INSENSITIVE3 expression. Thus, this study demonstrates that PIF1 and RVE1 form a transcriptional feedback loop that coordinately inhibits seed germination, providing a mechanistic understanding of how phyB-mediated light signal is transduced to the seeds.
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Affiliation(s)
- Liwen Yang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Zhimin Jiang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Yanjun Jing
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- Institute of Botany, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Beijing, 100093, China
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54
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Yang L, Liu S, Lin R. The role of light in regulating seed dormancy and germination. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2020; 62:1310-1326. [PMID: 32729981 DOI: 10.1111/jipb.13001] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 07/29/2020] [Indexed: 05/22/2023]
Abstract
Seed dormancy is an adaptive trait in plants. Breaking seed dormancy determines the timing of germination and is, thereby essential for ensuring plant survival and agricultural production. Seed dormancy and the subsequent germination are controlled by both internal cues (mainly hormones) and environmental signals. In the past few years, the roles of plant hormones in regulating seed dormancy and germination have been uncovered. However, we are only beginning to understand how light signaling pathways modulate seed dormancy and interaction with endogenous hormones. In this review, we summarize current views of the molecular mechanisms by which light controls the induction, maintenance and release of seed dormancy, as well as seed germination, by regulating hormone metabolism and signaling pathways.
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Affiliation(s)
- Liwen Yang
- Key Laboratory of Photobiology, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093, China
| | - Shuangrong Liu
- Key Laboratory of Photobiology, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, Institute of Botany, the Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- CAS Center for Excellence in Molecular Plant Sciences, the Chinese Academy of Sciences, Beijing, 100093, China
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55
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Bai Y, Xiao S, Zhang Z, Zhang Y, Sun H, Zhang K, Wang X, Bai Z, Li C, Liu L. Melatonin improves the germination rate of cotton seeds under drought stress by opening pores in the seed coat. PeerJ 2020; 8:e9450. [PMID: 32704446 PMCID: PMC7346864 DOI: 10.7717/peerj.9450] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 06/09/2020] [Indexed: 12/15/2022] Open
Abstract
The germination of cotton (Gossypium hirsutum L.) seeds is affected by drought stress; however, little is known about the physiological mechanism affecting germination and the effect of melatonin (MT) on cotton seed germination under drought stress. Therefore, we studied the effects of exogenous MT on the antioxidant capacity and epidermal microstructure of cotton under drought stress. The results demonstrated a retarded water absorption capacity of testa under drought stress, significantly inhibiting germination and growth in cotton seeds. Drought stress led to the accumulation of reactive oxygen species (ROS), malondialdehyde (MDA), and osmoregulatory substances (e.g., proline, soluble protein, and soluble sugars); it also decreased the activity of antioxidant enzymes and α-amylase. Drought stress inhibited gibberellin acid (GA3) synthesis and increased abscisic acid (ABA) content, seriously affecting seed germination. However, seeds pre-soaked with MT (100 µM) showed a positive regulation in the number and opening of stomata in cotton testa. The exogenous application of MT increased the germination rate, germination potential, radical length, and fresh weight, as well as the activities of superoxide dismutase (SOD), peroxidase (POD), and α-amylase. In addition, MT application increased the contents of organic osmotic substances by decreasing the hydrogen peroxide (H2O2), superoxide anion (O2 -), and MDA levels under drought stress. Further analysis demonstrated that seeds pre-soaked with MT alleviated drought stress by affecting the ABA and GA3 contents. Our findings show that MT plays a positive role in protecting cotton seeds from drought stress.
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Affiliation(s)
- Yandan Bai
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Shuang Xiao
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Zichen Zhang
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Yongjiang Zhang
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Hongchun Sun
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Ke Zhang
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Xiaodan Wang
- College of Traditional Chinese Veterinary Medicine, Hebei Agricultrual University, Baoding, China
| | - Zhiying Bai
- College of Life Science, Hebei Agricultrual University, Baoding, China
| | - Cundong Li
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
| | - Liantao Liu
- College of Agronomy, HeBei Agricultural University/ State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of Crop Growth Regulation of Hebei Province, Baoding, Hebei Province, China, Baoding, China
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Luo D, Qu L, Zhong M, Li X, Wang H, Miao J, Liu X, Zhao X. Vascular plant one-zinc finger 1 (VOZ1) and VOZ2 negatively regulate phytochrome B-mediated seed germination in Arabidopsis. Biosci Biotechnol Biochem 2020; 84:1384-1393. [DOI: 10.1080/09168451.2020.1740971] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
Abstract
Seed germination is regulated by light. Phytochromes (Phys) act as red and far-red light photoreceptors to mediate seed germination. However, the mechanism of this process is not well understood. In this study, we found that the Arabidopsis thaliana mutants vascular plant one-zinc finger 1 (voz1) and voz2 showed higher seed germination percentage than wild type when PhyB was inactivated by far-red light. In wild type, VOZ1 and VOZ2 expression were downregulated after seed imbibition, repressed by PhyB, and upregulated by Phytochrome-interacting factor 1 (PIF1), a key negative regulator of seed germination. Red light irradiation and the voz1voz2 mutation caused increased expression of Gibberellin 3-oxidase 1 (GA3ox1), a gibberellin (GA) biosynthetic gene. We also found that VOZ2 is bound directly to the promoter of GA3ox1 in vitro and in vivo. Our findings suggest that VOZs play a negative role in PhyB-mediated seed germination, possibly by directly regulating GA3ox1 expression.
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Affiliation(s)
- Dan Luo
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
- Shenzhen Institute, Hunan University, Shenzhen, China
| | - Lina Qu
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
- Shenzhen Institute, Hunan University, Shenzhen, China
| | - Ming Zhong
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
- Shenzhen Institute, Hunan University, Shenzhen, China
| | - Xinmei Li
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
- Shenzhen Institute, Hunan University, Shenzhen, China
| | - Han Wang
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
| | - Jiahui Miao
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
| | - Xuanming Liu
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
| | - Xiaoying Zhao
- College of Biology, Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, China
- Shenzhen Institute, Hunan University, Shenzhen, China
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57
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Ciou HS, Tsai YL, Chiu CC. Arabidopsis chloroplast J protein DJC75/CRRJ mediates nitrate-promoted seed germination in the dark. ANNALS OF BOTANY 2020; 125:1091-1099. [PMID: 32157271 PMCID: PMC7262469 DOI: 10.1093/aob/mcaa040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Accepted: 03/06/2020] [Indexed: 06/10/2023]
Abstract
BACKGROUND AND AIMS Nitrate can stimulate seed germination of many plant species in the absence of light; however, the molecular mechanism of nitrate-promoted seed germination in the dark remains largely unclear and no component of this pathway has been identified yet. Here, we show that a plastid J-domain protein, DJC75/CRRJ, in arabidopsis (Arabidopsis thaliana) is important for nitrate-promoted seed germination in the dark. METHODS The expression of DJC75 during imbibition in the dark was investigated. The seed germination rate of mutants defective in DJC75 was determined in the presence of nitrate when light cues for seed germination were eliminated by the treatment of imbibed seeds with a pulse of far-red light to inactivate phytochrome B (phyB), or by assaying germination in the dark with seeds harbouring the phyB mutation. The germination rates of mutants defective in CRRL, a J-like protein related to DJC75, and in two chloroplast Hsp70s were also measured in the presence of nitrate in darkness. KEY RESULTS DJC75 was expressed during seed imbibition in the absence of light. Mutants defective in DJC75 showed seed germination defects in the presence of nitrate when light cues for seed germination were eliminated. Mutants defective in CRRL and in two chloroplast Hsp70s also exhibited similar seed germination defects. Upregulation of gibberellin biosynthetic gene GA3ox1 expression by nitrate in imbibed phyB mutant seeds was diminished when DJC75 was knocked out. CONCLUSIONS Our data suggest that plastid J-domain protein DJC75 regulates nitrate-promoted seed germination in the dark by upregulation of expression of the gibberellin biosynthetic gene GA3ox1 through an unknown mechanism and that DJC75 may work in concert with chloroplast Hsp70s to regulate nitrate-promoted seed germination. DJC75 is the first pathway component identified for nitrate-promoted seed germination in the dark.
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Affiliation(s)
- Huai-Syuan Ciou
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan
| | - Yu-Lun Tsai
- Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
- Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan
| | - Chi-Chou Chiu
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan
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58
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Best C, Mizrahi R, Ostersetzer-Biran O. Why so Complex? The Intricacy of Genome Structure and Gene Expression, Associated with Angiosperm Mitochondria, May Relate to the Regulation of Embryo Quiescence or Dormancy-Intrinsic Blocks to Early Plant Life. PLANTS (BASEL, SWITZERLAND) 2020; 9:E598. [PMID: 32397140 PMCID: PMC7284508 DOI: 10.3390/plants9050598] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 04/30/2020] [Accepted: 04/30/2020] [Indexed: 12/14/2022]
Abstract
Mitochondria play key roles in cellular-energy metabolism and are vital for plant-life, such as for successful germination and early-seedling establishment. Most mitochondria contain their own genetic system (mtDNA, mitogenome), with an intrinsic protein-synthesis machinery. Although the challenges of maintaining prokaryotic-type structures and functions are common to Eukarya, land plants possess some of the most complex organelle composition of all known organisms. Angiosperms mtDNAs are characteristically the largest and least gene-dense among the eukaryotes. They often contain highly-variable intergenic regions of endogenous or foreign origins and undergo frequent recombination events, which result in different mtDNA configurations, even between closely-related species. The expression of the mitogenome in angiosperms involves extensive mtRNA processing steps, including numerous editing and splicing events. Why do land-plant's mitochondria have to be so complex? The answer to this remains a matter of speculation. We propose that this complexity may have arisen throughout the terrestrialization of plants, as a means to control embryonic mitochondrial functions -a critical adaptive trait to optimize seed germination. The unique characteristics of plant mtDNA may play pivotal roles in the nuclear-regulation of organellar biogenesis and metabolism, possibly to control embryos quiescence or dormancy, essential determinants for the establishment of viable plantlets that can survive post-germination.
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Affiliation(s)
| | | | - Oren Ostersetzer-Biran
- Department of Plant and Environmental Sciences, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Edmond J. Safra Campus—Givat Ram, Jerusalem 9190401, Israel; (C.B.); (R.M.)
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59
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Villacañas de Castro C, Hoffmeister TS. Friend or foe? A parasitic wasp shifts the cost/benefit ratio in a nursery pollination system impacting plant fitness. Ecol Evol 2020; 10:4220-4232. [PMID: 32489591 PMCID: PMC7246216 DOI: 10.1002/ece3.6190] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 01/16/2020] [Accepted: 02/17/2020] [Indexed: 11/26/2022] Open
Abstract
Nursery pollination systems are species interactions where pollinators also act as fruit/seed herbivores of the plant partner. While the plants depend on associated insects for pollination, the insects depend on the plants' reproductive structures for larval development. The outcome of these interactions is thus placed on a gradient between mutualism and antagonism. Less specialized interactions may fluctuate along this gradient with the ecological context, where natural enemies can play an important role. We studied whether a natural enemy may impact the level of seed consumption of a nursery pollinator and how this in turn may influence individual plant fitness. We used the plant Silene latifolia, its herbivore Hadena bicruris, and its ectoparasitoid Bracon variator as a model plant-herbivore-natural enemy system. We investigated seed output, germination, survival, and flower production as proxies for individual plant fitness. We show that B. variator decreases the level of seed consumption by H. bicruris larvae which in turn increased seed output in S. latifolia plants, suggesting that parasitism by B. variator may act as a regulator in the system. However, our results also show that plant survival and flower production decrease with higher seed densities, and therefore, an increase in seed output may be less beneficial for plant fitness than estimated from seed output alone. Our study should add another layer to the complex discussion of whether parasitoids contribute to plant fitness, as we show that taking simple proxies such as seed output is insufficient to determine the net effect of multitrophic interactions.
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Affiliation(s)
| | - Thomas S. Hoffmeister
- Population and Evolutionary Ecology GroupInstitute of EcologyFB 02University of BremenBremenGermany
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60
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Barreto LC, Herken DMD, Silva BMR, Munné-Bosch S, Garcia QS. ABA and GA 4 dynamic modulates secondary dormancy and germination in Syngonanthus verticillatus seeds. PLANTA 2020; 251:86. [PMID: 32221719 DOI: 10.1007/s00425-020-03378-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 03/14/2020] [Indexed: 05/17/2023]
Abstract
ABA and GA metabolism during incubation rather than hormone contents in dry seeds is the key to understanding secondary dormancy and germination of Syngonanthus verticillatus seeds. The mechanism of seed dormancy cycle, although very important for preventing germination during unfavorable periods for seedling establishment, is poorly understood in tropical species. Here, we used a perennial tropical species of the Brazilian campo rupestre, Syngonanthus verticillatus (Eriocaulaceae), to investigate the involvement of ABA and GA in modulating secondary dormancy of seeds buried in situ over time and the dynamic of these hormones during the incubation of dormant and non-dormant seeds. Hormone analyses were carried out with freshly harvested seeds and on buried seeds exhumed after 3, 6 and 9 months. Dynamics of ABA and GAs in dormant and non-dormant seeds during incubation (0, 12, 24 and 36 h) under favorable conditions for germination (at 20 °C in the presence of light) were also investigated. In addition, the effects of GA4 and fluridone were evaluated for overcoming secondary dormancy. Our results showed that changes in the contents of both ABA and GA4 occurred after burial, suggesting they may be related to the modulation of secondary dormancy/germination of S. verticillatus seeds. The application of fluridone was more effective than GA4 at overcoming secondary dormancy. We conclude that during incubation, de novo ABA synthesis and its consequent maintenance at high contents regulate the inhibition of germination in dormant seeds, while GA4 synthesis and ABA catabolism modulate the germination of non-dormant seeds. ABA and GA metabolism during incubation of both dormant and non-dormant seeds rather than hormone contents of dry seeds in the field is thought to be the key to understanding secondary dormancy and germination.
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Affiliation(s)
- Leilane C Barreto
- Laboratório de Fisiologia Vegetal, Departamento de Botânica, Universidade Federal de Minas Gerais, Caixa Postal 486, Belo Horizonte, MG, CEP 31.270-901, Brazil
| | - Daniela M D Herken
- Laboratório de Fisiologia Vegetal, Departamento de Botânica, Universidade Federal de Minas Gerais, Caixa Postal 486, Belo Horizonte, MG, CEP 31.270-901, Brazil
| | - Brenda M R Silva
- Laboratório de Fisiologia Vegetal, Departamento de Botânica, Universidade Federal de Minas Gerais, Caixa Postal 486, Belo Horizonte, MG, CEP 31.270-901, Brazil
| | - Sergi Munné-Bosch
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain
- Institut de Recerca de La Biodiversitat (IrBio), Universitat de Barcelona, Barcelona, Spain
| | - Queila S Garcia
- Laboratório de Fisiologia Vegetal, Departamento de Botânica, Universidade Federal de Minas Gerais, Caixa Postal 486, Belo Horizonte, MG, CEP 31.270-901, Brazil.
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Chen F, Zhou W, Yin H, Luo X, Chen W, Liu X, Wang X, Meng Y, Feng L, Qin Y, Zhang C, Yang F, Yong T, Wang X, Liu J, Du J, Liu W, Yang W, Shu K. Shading of the mother plant during seed development promotes subsequent seed germination in soybean. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2072-2084. [PMID: 31925954 PMCID: PMC7242070 DOI: 10.1093/jxb/erz553] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 12/12/2019] [Indexed: 05/03/2023]
Abstract
The effect of shading during seed development on subsequent germination remains largely unknown. In this study, two soybean (Glycine max) seed production systems, monocropping (MC) and maize-soybean intercropping (IC), were employed to examine the effects of shading of the mother plant on subsequent seed germination. Compared to the MC soybean seeds, which received light, the developing IC seeds were exposed to shade resulting from the taller neighboring maize plants. The IC seeds germinated faster than the MC seeds, although there was no significant difference in the thickness of the seed coat. The concentration of soluble pro-anthocyanidin in the IC seed coat was significantly lower than that in the MC seed coat. Changes in the concentrations of several types of fatty acids in IC seeds were also observed, the nature of which were consistent with the effect on germination. The expression levels of genes involved in abscisic acid (ABA) biosynthesis were down-regulated in IC seeds, while the transcription levels of the genes related to gibberellin (GA) biosynthesis were up-regulated. This was consistently reflected in decreased ABA concentrations and increased active GA4 concentrations in IC seeds, resulting in an increased GA4/ABA ratio. Our results thus indicated that shading of the mother plant during seed development in soybean promoted subsequent germination by mediating the biosynthesis of pro-anthocyanidins, fatty acids, and phytohormones.
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Affiliation(s)
- Feng Chen
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Wenguan Zhou
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Han Yin
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Xiaofeng Luo
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Wei Chen
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
| | - Xin Liu
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
- College of Agronomy, Shandong Agricultural University, Taian, China
| | - Xingcai Wang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Yongjie Meng
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Lingyang Feng
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Yuanyuan Qin
- Wuhan Metware Biotechnology Co., Ltd., Wuhan, China
| | | | - Feng Yang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Taiwen Yong
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Xiaochun Wang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Jiang Liu
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Junbo Du
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Weiguo Liu
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Wenyu Yang
- Key Laboratory of Crop Ecophysiology and Farming System in Southwest China, Institute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, China
| | - Kai Shu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi’an, China
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Zha P, Liu S, Li Y, Ma T, Yang L, Jing Y, Lin R. The Evening Complex and the Chromatin-Remodeling Factor PICKLE Coordinately Control Seed Dormancy by Directly Repressing DOG1 in Arabidopsis. PLANT COMMUNICATIONS 2020; 1:100011. [PMID: 33404551 PMCID: PMC7748002 DOI: 10.1016/j.xplc.2019.100011] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 11/23/2019] [Accepted: 11/28/2019] [Indexed: 05/22/2023]
Abstract
Primary seed dormancy is acquired during seed development and maturation, which is important for plant fitness and survival. DELAY OF GERMINATION1 (DOG1) plays a critical role in inducing seed dormancy. DOG1 expression increases rapidly during seed development, but the precise mechanism underlying this process remains elusive. In this study, we showed that mutants with a loss or reduced function of the chromatin-remodeling factor PICKLE (PKL) exhibit increased seed dormancy. PKL associates with DOG1 chromatin and inhibits its transcription. We found that PKL physically interacts with LUX ARRHYTHMO (LUX), a member of the evening complex (EC) of the circadian clock. Furthermore, LUX directly binds to a specific coding sequence of DOG1, and DOG1 acts genetically downstream of PKL and LUX. Mutations in either LUX or EARLY FLOWERING3 (ELF3) encoding another member of the EC led to increased DOG1 expression and enhanced seed dormancy. Surprisingly, these phenotypes were abolished when the parent plants were grown under continuous light. In addition, we observed that loss of function of either PKL or LUX decreased H3K27me3 levels at the DOG1 locus. Taken together, our study reveals a regulatory mechanism in which EC proteins coordinate with PKL to transmit circadian signals for directly regulating DOG1 expression and seed dormancy during seed development.
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Affiliation(s)
- Ping Zha
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Shuangrong Liu
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yang Li
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tingting Ma
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Liwen Yang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yanjun Jing
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- Corresponding author
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63
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Wade R, Augyte S, Harden M, Nuzhdin S, Yarish C, Alberto F. Macroalgal germplasm banking for conservation, food security, and industry. PLoS Biol 2020; 18:e3000641. [PMID: 32058997 PMCID: PMC7046291 DOI: 10.1371/journal.pbio.3000641] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Revised: 02/27/2020] [Indexed: 01/02/2023] Open
Abstract
Ex situ seed banking was first conceptualized and implemented in the early 20th century to maintain and protect crop lines. Today, ex situ seed banking is important for the preservation of heirloom strains, biodiversity conservation and ecosystem restoration, and diverse research applications. However, these efforts primarily target microalgae and terrestrial plants. Although some collections include macroalgae (i.e., seaweeds), they are relatively few and have yet to be connected via any international, coordinated initiative. In this piece, we provide a brief introduction to macroalgal germplasm banking and its application to conservation, industry, and mariculture. We argue that concerted effort should be made globally in germline preservation of marine algal species via germplasm banking with an overview of the technical advances for feasibility and ensured success. Seaweed germplasm banking is an important resource for biodiversity conservation, human food security, and industry innovation. This Perspective article maintains that an international, coordinative initiative is needed to fully develop and capitalize on this resource.
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Affiliation(s)
- Rachael Wade
- University of Wisconsin Milwaukee, Milwaukee, Wisconsin, United States of America
- * E-mail:
| | - Simona Augyte
- University of Connecticut Stamford, Stamford, Connecticut, United States of America
| | - Maddelyn Harden
- University of Southern California, Los Angeles, California, United States of America
| | - Sergey Nuzhdin
- University of Southern California, Los Angeles, California, United States of America
| | - Charles Yarish
- University of Connecticut Stamford, Stamford, Connecticut, United States of America
| | - Filipe Alberto
- University of Wisconsin Milwaukee, Milwaukee, Wisconsin, United States of America
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64
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Yang L, Jiang Z, Liu S, Lin R. Interplay between REVEILLE1 and RGA-LIKE2 regulates seed dormancy and germination in Arabidopsis. THE NEW PHYTOLOGIST 2020; 225:1593-1605. [PMID: 31580487 DOI: 10.1111/nph.16236] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 09/26/2019] [Indexed: 05/22/2023]
Abstract
Environmental light signal and GAs synergistically regulate seed dormancy and germination. The phytochrome B (phyB) photoreceptor regulates expression of the REVEILLE1 (RVE1) transcription factor, which directly inhibits GIBBERELLIN 3-OXIDASE2 transcription, suppressing GA biosynthesis. However, whether phyB-RVE1 coordinates with GA signaling in controlling seed dormancy and germination remains unknown. Here, we demonstrate that RVE1 regulation of seed dormancy and germination requires a DELLA repressor, REPRESSOR OF GA-LIKE2 (RGL2), in Arabidopsis thaliana. RVE1 interacts with both RGL2 and its E3 ubiquitin ligase SLEEPY1 (SLY1) and promotes RGL2 stability by restraining the RGL2-SLY1 interaction. Furthermore, RVE1 and RGL2 synergistically regulate global transcriptome changes; RGL2 enhances the DNA-binding capacity and transcriptional activity of RVE1 in regulating downstream gene expression. Moreover, RGL2 expression is repressed by phyB. Our study reveals a novel regulatory mechanism in which the RVE1-RGL2 module coordinately controls seed dormancy and germination by integrating light perception, GA metabolism and GA signaling pathways.
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Affiliation(s)
- Liwen Yang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Zhimin Jiang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Shuangrong Liu
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Rongcheng Lin
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Beijing, 100093, China
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65
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Mwando E, Angessa TT, Han Y, Li C. Salinity tolerance in barley during germination- homologs and potential genes. J Zhejiang Univ Sci B 2020; 21:93-121. [PMID: 32115909 PMCID: PMC7076347 DOI: 10.1631/jzus.b1900400] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Accepted: 09/25/2019] [Indexed: 12/13/2022]
Abstract
Salinity affects more than 6% of the world's total land area, causing massive losses in crop yield. Salinity inhibits plant growth and development through osmotic and ionic stresses; however, some plants exhibit adaptations through osmotic regulation, exclusion, and translocation of accumulated Na+ or Cl-. Currently, there are no practical, economically viable methods for managing salinity, so the best practice is to grow crops with improved tolerance. Germination is the stage in a plant's life cycle most adversely affected by salinity. Barley, the fourth most important cereal crop in the world, has outstanding salinity tolerance, relative to other cereal crops. Here, we review the genetics of salinity tolerance in barley during germination by summarizing reported quantitative trait loci (QTLs) and functional genes. The homologs of candidate genes for salinity tolerance in Arabidopsis, soybean, maize, wheat, and rice have been blasted and mapped on the barley reference genome. The genetic diversity of three reported functional gene families for salt tolerance during barley germination, namely dehydration-responsive element-binding (DREB) protein, somatic embryogenesis receptor-like kinase and aquaporin genes, is discussed. While all three gene families show great diversity in most plant species, the DREB gene family is more diverse in barley than in wheat and rice. Further to this review, a convenient method for screening for salinity tolerance at germination is needed, and the mechanisms of action of the genes involved in salt tolerance need to be identified, validated, and transferred to commercial cultivars for field production in saline soil.
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Affiliation(s)
- Edward Mwando
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
| | - Tefera Tolera Angessa
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
- Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA 6151, Australia
| | - Yong Han
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
| | - Chengdao Li
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
- Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA 6151, Australia
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66
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Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2020; 117:2526-2534. [PMID: 31964817 PMCID: PMC7007534 DOI: 10.1073/pnas.1912451117] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
The seasonal timing of seed germination is critical for plant fitness in different climates. To germinate at the right time of year, seeds respond to seasonal environmental cues, such as cold temperatures. We characterized genetic variation in seed dormancy responses to cold across the geographic range of a widespread annual plant. Induction of secondary seed dormancy during winter conditions (which restricts germination to autumn) was positively correlated with flowering time, constructing winter and spring seasonal life-history strategies. Variation in seed chilling responses was strongly associated with functional variants of a known dormancy gene. These variants showed evidence of ancient diversification associated with Pleistocene glacial cycles, and were associated with climate gradients across the species’ geographical range. The seasonal timing of seed germination determines a plant’s realized environmental niche, and is important for adaptation to climate. The timing of seasonal germination depends on patterns of seed dormancy release or induction by cold and interacts with flowering-time variation to construct different seasonal life histories. To characterize the genetic basis and climatic associations of natural variation in seed chilling responses and associated life-history syndromes, we selected 559 fully sequenced accessions of the model annual species Arabidopsis thaliana from across a wide climate range and scored each for seed germination across a range of 13 cold stratification treatments, as well as the timing of flowering and senescence. Germination strategies varied continuously along 2 major axes: 1) Overall germination fraction and 2) induction vs. release of dormancy by cold. Natural variation in seed responses to chilling was correlated with flowering time and senescence to create a range of seasonal life-history syndromes. Genome-wide association identified several loci associated with natural variation in seed chilling responses, including a known functional polymorphism in the self-binding domain of the candidate gene DOG1. A phylogeny of DOG1 haplotypes revealed ancient divergence of these functional variants associated with periods of Pleistocene climate change, and Gradient Forest analysis showed that allele turnover of candidate SNPs was significantly associated with climate gradients. These results provide evidence that A. thaliana’s germination niche and correlated life-history syndromes are shaped by past climate cycles, as well as local adaptation to contemporary climate.
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67
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Ali MH, Sobze JM, Pham TH, Nadeem M, Liu C, Galagedara L, Cheema M, Thomas R. Carbon Nanoparticles Functionalized with Carboxylic Acid Improved the Germination and Seedling Vigor in Upland Boreal Forest Species. NANOMATERIALS 2020; 10:nano10010176. [PMID: 31968542 PMCID: PMC7023356 DOI: 10.3390/nano10010176] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Revised: 12/14/2019] [Accepted: 01/14/2020] [Indexed: 12/21/2022]
Abstract
Nanopriming has been shown to significantly improve seed germination and seedling vigor in several agricultural crops. However, this approach has not been applied to native upland boreal forest species with complex seed dormancy to improve propagation. Herein, we demonstrate the effectiveness of carbon nanoparticles functionalized with carboxylic acids in resolving seed dormancy and improved the propagation of two native upland boreal forest species. Seed priming with carbon nanoparticles functionalized with carboxylic acids followed by stratification were observed to be the most effective in improving germination to 90% in green alder (Alnus viridis L.) compared to 60% in the control. Conversely, a combination of carbon nanoparticles (CNPs), especially multiwall carbon nanoparticles functionalized with carboxylic acid (MWCNT–COOH), cold stratification, mechanical scarification and hormonal priming (gibberellic acid) was effective for buffaloberry seeds (Shepherdia canadensis L.). Both concentrations (20 µg and 40 µg) of MWCNT–COOH had a higher percent germination (90%) compared to all other treatments. Furthermore, we observed the improvement in germination, seedling vigor and resolution of both embryo and seed coat dormancy in upland boreal forest species appears to be associated with the remodeling of C18:3 enriched fatty acids in the following seed membrane lipid molecular species: PC18:1/18:3, PG16:1/18:3, PE18:3/18:2, and digalactosyldiacylglycerol (DGDG18:3/18:3). These findings suggest that nanopriming may be a useful approach to resolve seed dormancy issues and improve the seed germination in non-resource upland boreal forest species ideally suited for forest reclamation following resource mining.
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Affiliation(s)
- Md. Hossen Ali
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Jean-Marie Sobze
- Northern Alberta Institute of Technology, 8102-99 Avenue, Peace River, AL T8S 1R2, Canada;
| | - Thu Huong Pham
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Muhammad Nadeem
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
- Correspondence: (M.N.); (R.T.)
| | - Chen Liu
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Lakshman Galagedara
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Mumtaz Cheema
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
| | - Raymond Thomas
- School of Science and the Environment/Boreal Ecosystem Research Facility, Grenfell Campus, Memorial University of Newfoundland, Corner Brook, NL A2H 5G5, Canada; (M.H.A.); (T.H.P.); (C.L.); (L.G.); (M.C.)
- Correspondence: (M.N.); (R.T.)
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Pellizzaro A, Neveu M, Lalanne D, Ly Vu B, Kanno Y, Seo M, Leprince O, Buitink J. A role for auxin signaling in the acquisition of longevity during seed maturation. THE NEW PHYTOLOGIST 2020; 225:284-296. [PMID: 31461534 DOI: 10.1111/nph.16150] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 08/14/2019] [Indexed: 05/23/2023]
Abstract
Seed longevity, the maintenance of viability during dry storage, is a crucial factor to preserve plant genetic resources and seed vigor. Inference of a temporal gene-regulatory network of seed maturation identified auxin signaling as a putative mechanism to induce longevity-related genes. Using auxin-response sensors and tryptophan-dependent auxin biosynthesis mutants of Arabidopsis thaliana L., the role of auxin signaling in longevity was studied during seed maturation. DII and DR5 sensors demonstrated that, concomitant with the acquisition of longevity, auxin signaling input and output increased and underwent a spatiotemporal redistribution, spreading throughout the embryo. Longevity of seeds of single auxin biosynthesis mutants with altered auxin signaling activity was affected in a dose-response manner depending on the level of auxin activity. Longevity-associated genes with promoters enriched in auxin response elements and the master regulator ABSCISIC ACID INSENSITIVE3 were induced by auxin in developing embryos and deregulated in auxin biosynthesis mutants. The beneficial effect of exogenous auxin during seed maturation on seed longevity was abolished in abi3-1 mutants. These data suggest a role for auxin signaling activity in the acquisition of longevity during seed maturation.
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Affiliation(s)
- Anthoni Pellizzaro
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, Beaucouzé, 49070, France
| | - Martine Neveu
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, Beaucouzé, 49070, France
| | - David Lalanne
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, Beaucouzé, 49070, France
| | - Benoit Ly Vu
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, Beaucouzé, 49070, France
| | - Yuri Kanno
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Mitsunori Seo
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Olivier Leprince
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, Beaucouzé, 49070, France
| | - Julia Buitink
- UMR 1345 Institut de Recherche en Horticulture et Semences, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, Beaucouzé, 49070, France
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Hussain S, Kim SH, Bahk S, Ali A, Nguyen XC, Yun DJ, Chung WS. The Auxin Signaling Repressor IAA8 Promotes Seed Germination Through Down-Regulation of ABI3 Transcription in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2020; 11:111. [PMID: 32153614 PMCID: PMC7045070 DOI: 10.3389/fpls.2020.00111] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 01/24/2020] [Indexed: 05/22/2023]
Abstract
Seed germination is a complex biological process controlled by various regulators, including phytohormones. Among these, abscisic acid and gibberellic acid inhibit and promote seed germination, respectively. Many studies have addressed the biological roles of auxin in plant growth and development, but very few have considered its role in seed germination. Here, we identified a novel function of the auxin signaling repressor Aux/IAA8 during seed germination. The IAA8 loss-of-function mutant iaa8-1 exhibited delayed seed germination. The phenotype of iaa8-1 was restored by ectopic expression of IAA8. Interestingly, IAA8 accumulated to high levels during seed germination, which was achieved not only by increased protein synthesis but also by the stabilization of IAA8 protein. We also showed that IAA8 down-regulates the transcription of ABSCISIC ACID INSENSITIVE3 (ABI3), a negative regulator of seed germination. Our study, thus strongly suggest that the auxin signaling repressor IAA8 acts as a positive regulator of seed germination in Arabidopsis thaliana.
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Affiliation(s)
- Shah Hussain
- Division of Applied Life Science (BK21 Plus program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, South Korea
| | - Sun Ho Kim
- Division of Applied Life Science (BK21 Plus program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, South Korea
| | - Sunghwa Bahk
- Division of Applied Life Science (BK21 Plus program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, South Korea
| | - Akhtar Ali
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, South Korea
| | - Xuan Canh Nguyen
- Faculty of Biotechnology, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Dae-Jin Yun
- Department of Biomedical Science and Engineering, Konkuk University, Seoul, South Korea
| | - Woo Sik Chung
- Division of Applied Life Science (BK21 Plus program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, South Korea
- *Correspondence: Woo Sik Chung,
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70
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Kim JY, Jeong S, Kim KH, Lim WJ, Lee HY, Jeong N, Moon JK, Kim N. Dissection of soybean populations according to selection signatures based on whole-genome sequences. Gigascience 2019; 8:giz151. [PMID: 31869408 PMCID: PMC6927394 DOI: 10.1093/gigascience/giz151] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Revised: 08/21/2019] [Accepted: 12/05/2019] [Indexed: 12/18/2022] Open
Abstract
BACKGROUND Domestication and improvement processes, accompanied by selections and adaptations, have generated genome-wide divergence and stratification in soybean populations. Simultaneously, soybean populations, which comprise diverse subpopulations, have developed their own adaptive characteristics enhancing fitness, resistance, agronomic traits, and morphological features. The genetic traits underlying these characteristics play a fundamental role in improving other soybean populations. RESULTS This study focused on identifying the selection signatures and adaptive characteristics in soybean populations. A core set of 245 accessions (112 wild-type, 79 landrace, and 54 improvement soybeans) selected from 4,234 soybean accessions was re-sequenced. Their genomic architectures were examined according to the domestication and improvement, and accessions were then classified into 3 wild-type, 2 landrace, and 2 improvement subgroups based on various population analyses. Selection and gene set enrichment analyses revealed that the landrace subgroups have selection signals for soybean-cyst nematode HG type 0 and seed development with germination, and that the improvement subgroups have selection signals for plant development with viability and seed development with embryo development, respectively. The adaptive characteristic for soybean-cyst nematode was partially underpinned by multiple resistance accessions, and the characteristics related to seed development were supported by our phenotypic findings for seed weights. Furthermore, their adaptive characteristics were also confirmed as genome-based evidence, and unique genomic regions that exhibit distinct selection and selective sweep patterns were revealed for 13 candidate genes. CONCLUSIONS Although our findings require further biological validation, they provide valuable information about soybean breeding strategies and present new options for breeders seeking donor lines to improve soybean populations.
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Affiliation(s)
- Jae-Yoon Kim
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Gwahak-ro 125, Yuseong-gu, Daejeon 34141, Republic of Korea
- Department of Bioinformatics, KRIBB School of Bioscience, University of Science and Technology (UST), Gajeong-ro 217, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Seongmun Jeong
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Gwahak-ro 125, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Kyoung Hyoun Kim
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Gwahak-ro 125, Yuseong-gu, Daejeon 34141, Republic of Korea
- Department of Bioinformatics, KRIBB School of Bioscience, University of Science and Technology (UST), Gajeong-ro 217, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Won-Jun Lim
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Gwahak-ro 125, Yuseong-gu, Daejeon 34141, Republic of Korea
- Department of Bioinformatics, KRIBB School of Bioscience, University of Science and Technology (UST), Gajeong-ro 217, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Ho-Yeon Lee
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Gwahak-ro 125, Yuseong-gu, Daejeon 34141, Republic of Korea
- Department of Bioinformatics, KRIBB School of Bioscience, University of Science and Technology (UST), Gajeong-ro 217, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Namhee Jeong
- National Institute of Crop Science, Rural Development Administration, Nongsaengmyeong-ro 370, Deokjin-gu, Jeon-Ju 54874, Republic of Korea
| | - Jung-Kyung Moon
- National Institute of Crop Science, Rural Development Administration, Nongsaengmyeong-ro 370, Deokjin-gu, Jeon-Ju 54874, Republic of Korea
| | - Namshin Kim
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Gwahak-ro 125, Yuseong-gu, Daejeon 34141, Republic of Korea
- Department of Bioinformatics, KRIBB School of Bioscience, University of Science and Technology (UST), Gajeong-ro 217, Yuseong-gu, Daejeon 34141, Republic of Korea
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Chen JC, Tong CG, Lin HY, Fang SC. Phalaenopsis LEAFY COTYLEDON1-Induced Somatic Embryonic Structures Are Morphologically Distinct From Protocorm-Like Bodies. FRONTIERS IN PLANT SCIENCE 2019; 10:1594. [PMID: 31850050 PMCID: PMC6896055 DOI: 10.3389/fpls.2019.01594] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 11/13/2019] [Indexed: 05/27/2023]
Abstract
Somatic embryogenesis is commonly used for clonal propagation of a wide variety of plant species. Induction of protocorm-like-bodies (PLBs), which are capable of developing into individual plants, is a routine tissue culture-based practice for micropropagation of orchid plants. Even though PLBs are often regarded as somatic embryos, our recent study provides molecular evidence to argue that PLBs are not derived from somatic embryogenesis. Here, we report and characterize the somatic embryonic tissues induced by Phalaenopsis aphrodite LEAFY COTYLEDON1 (PaLEC1) in Phalaenopsis equestris. We found that PaLEC1-induced somatic tissues are morphologically different from PLBs, supporting our molecular study that PLBs are not of somatic embryonic origin. The embryonic identity of PaLEC1-induced embryonic tissues was confirmed by expression of the embryonic-specific transcription factors FUSCA3 (FUS3) and ABSCISIC ACID INSENSITIVE3 (ABI3), and seed storage proteins 7S GLOBULIN and OLEOSIN. Moreover, PaLEC1-GFP protein was found to be associated with the Pa7S-1 and PaFUS3 promoters containing the CCAAT element, supporting that PaLEC1 directly regulates embryo-specific processes to activate the somatic embryonic program in P. equestris. Despite diverse embryonic structures, PaLEC1-GFP-induced embryonic structures are pluripotent and capable of generating new shoots. Our study resolves the long-term debate on the developmental identity of PLB and suggests that somatic embryogenesis may be a useful approach to clonally propagate orchid seedlings.
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Affiliation(s)
- Jhun-Chen Chen
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Chii-Gong Tong
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Hsiang-Yin Lin
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Su-Chiung Fang
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
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72
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Boter M, Calleja-Cabrera J, Carrera-Castaño G, Wagner G, Hatzig SV, Snowdon RJ, Legoahec L, Bianchetti G, Bouchereau A, Nesi N, Pernas M, Oñate-Sánchez L. An Integrative Approach to Analyze Seed Germination in Brassica napus. FRONTIERS IN PLANT SCIENCE 2019; 10:1342. [PMID: 31708951 PMCID: PMC6824160 DOI: 10.3389/fpls.2019.01342] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 09/26/2019] [Indexed: 05/23/2023]
Abstract
Seed germination is a complex trait determined by the interaction of hormonal, metabolic, genetic, and environmental components. Variability of this trait in crops has a big impact on seedling establishment and yield in the field. Classical studies of this trait in crops have focused mainly on the analyses of one level of regulation in the cascade of events leading to seed germination. We have carried out an integrative and extensive approach to deepen our understanding of seed germination in Brassica napus by generating transcriptomic, metabolic, and hormonal data at different stages upon seed imbibition. Deep phenotyping of different seed germination-associated traits in six winter-type B. napus accessions has revealed that seed germination kinetics, in particular seed germination speed, are major contributors to the variability of this trait. Metabolic profiling of these accessions has allowed us to describe a common pattern of metabolic change and to identify the levels of malate and aspartate metabolites as putative metabolic markers to estimate germination performance. Additionally, analysis of seed content of different hormones suggests that hormonal balance between ABA, GA, and IAA at crucial time points during this process might underlie seed germination differences in these accessions. In this study, we have also defined the major transcriptome changes accompanying the germination process in B. napus. Furthermore, we have observed that earlier activation of key germination regulatory genes seems to generate the differences in germination speed observed between accessions in B. napus. Finally, we have found that protein-protein interactions between some of these key regulator are conserved in B. napus, suggesting a shared regulatory network with other plant species. Altogether, our results provide a comprehensive and detailed picture of seed germination dynamics in oilseed rape. This new framework will be extremely valuable not only to evaluate germination performance of B. napus accessions but also to identify key targets for crop improvement in this important process.
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Affiliation(s)
- Marta Boter
- Centro de Biotecnología y Genómica de Plantas, (Universidad Politécnica de Madrid –Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria), Madrid, Spain
| | - Julián Calleja-Cabrera
- Centro de Biotecnología y Genómica de Plantas, (Universidad Politécnica de Madrid –Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria), Madrid, Spain
| | - Gerardo Carrera-Castaño
- Centro de Biotecnología y Genómica de Plantas, (Universidad Politécnica de Madrid –Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria), Madrid, Spain
| | - Geoffrey Wagner
- Department of Plant Breeding, Justus Liebig University Giessen, Giessen, Germany
| | - Sarah Vanessa Hatzig
- Department of Plant Breeding, Justus Liebig University Giessen, Giessen, Germany
| | - Rod J. Snowdon
- Department of Plant Breeding, Justus Liebig University Giessen, Giessen, Germany
| | - Laurie Legoahec
- Joint Laboratory for Genetics, Institute for Genetics, Environment and Plant Protection (IGEPP), Le Rheu, France
| | - Grégoire Bianchetti
- Joint Laboratory for Genetics, Institute for Genetics, Environment and Plant Protection (IGEPP), Le Rheu, France
| | - Alain Bouchereau
- Joint Laboratory for Genetics, Institute for Genetics, Environment and Plant Protection (IGEPP), Le Rheu, France
| | - Nathalie Nesi
- Joint Laboratory for Genetics, Institute for Genetics, Environment and Plant Protection (IGEPP), Le Rheu, France
| | - Mónica Pernas
- Centro de Biotecnología y Genómica de Plantas, (Universidad Politécnica de Madrid –Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria), Madrid, Spain
| | - Luis Oñate-Sánchez
- Centro de Biotecnología y Genómica de Plantas, (Universidad Politécnica de Madrid –Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria), Madrid, Spain
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73
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Sall K, Dekkers BJW, Nonogaki M, Katsuragawa Y, Koyari R, Hendrix D, Willems LAJ, Bentsink L, Nonogaki H. DELAY OF GERMINATION 1-LIKE 4 acts as an inducer of seed reserve accumulation. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 100:7-19. [PMID: 31359518 DOI: 10.1111/tpj.14485] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 06/10/2019] [Accepted: 06/17/2019] [Indexed: 05/18/2023]
Abstract
More than 70% of global food supply depends on seeds. The major seed reserves, such as proteins, lipids, and polysaccharides, are produced during seed maturation. Here, we report that DELAY OF GERMINATION 1-LIKE 4 (DOGL4) is a major inducer of reserve accumulation during seed maturation. The DOGL family proteins are plant-specific proteins of largely unknown biochemical function. DOGL4 shares only limited homology in amino acid sequence with DOG1, a major regulator of seed dormancy. DOGL4 was identified as one of the outstanding abscisic acid (ABA)-induced genes in our RNA sequencing analysis, whereas DOG1 was not induced by ABA. Induction of DOGL4 caused the expression of 70 seed maturation-specific genes, even in germinating seeds, including the major seed reserves ALBUMIN, CRUCIFERIN and OLEOSIN. Although DOG1 affects the expression of many seed maturation genes, the major seed reserve genes induced by DOGL4 are not altered by the dog1 mutation. Furthermore, the reduced dormancy and longevity phenotypes observed in the dog1 seeds were not observed in the dogl4 mutants, suggesting that these two genes have limited functional overlap. Taken together, these results suggest that DOGL4 is a central factor mediating reserve accumulation in seeds, and that the two DOG1 family proteins have diverged over the course of evolution into independent regulators of seed maturation, but retain some overlapping function.
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Affiliation(s)
- Khadidiatou Sall
- Department of Horticulture, Oregon State University, Corvallis, OR, 97331, USA
| | - Bas J W Dekkers
- Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, Wageningen, the Netherlands
| | - Mariko Nonogaki
- Department of Horticulture, Oregon State University, Corvallis, OR, 97331, USA
| | | | - Ryosuke Koyari
- Department of Horticulture, Oregon State University, Corvallis, OR, 97331, USA
| | - David Hendrix
- Department of Biochemistry and Biophysics, School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, 97331, USA
| | - Leo A J Willems
- Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, Wageningen, the Netherlands
| | - Leónie Bentsink
- Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, Wageningen, the Netherlands
| | - Hiroyuki Nonogaki
- Department of Horticulture, Oregon State University, Corvallis, OR, 97331, USA
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74
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Nguyen QTC, Lee SJ, Choi SW, Na YJ, Song MR, Hoang QTN, Sim SY, Kim MS, Kim JI, Soh MS, Kim SY. Arabidopsis Raf-Like Kinase Raf10 Is a Regulatory Component of Core ABA Signaling. Mol Cells 2019; 42:646-660. [PMID: 31480825 PMCID: PMC6776158 DOI: 10.14348/molcells.2019.0173] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 08/09/2019] [Indexed: 11/27/2022] Open
Abstract
Abscisic acid (ABA) is a phytohormone essential for seed development and seedling growth under unfavorable environmental conditions. The signaling pathway leading to ABA response has been established, but relatively little is known about the functional regulation of the constituent signaling components. Here, we present several lines of evidence that Arabidopsis Raf-like kinase Raf10 modulates the core ABA signaling downstream of signal perception step. In particular, Raf10 phosphorylates subclass III SnRK2s (SnRK2.2, SnRK2.3, and SnRK2.6), which are key positive regulators, and our study focused on SnRK2.3 indicates that Raf10 enhances its kinase activity and may facilitate its release from negative regulators. Raf10 also phosphorylates transcription factors (ABI5, ABF2, and ABI3) critical for ABAregulted gene expression. Furthermore, Raf10 was found to be essential for the in vivo functions of SnRK2s and ABI5. Collectively, our data demonstrate that Raf10 is a novel regulatory component of core ABA signaling.
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Affiliation(s)
- Quy Thi Cam Nguyen
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Sun-ji Lee
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Seo-wha Choi
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Yeon-ju Na
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Mi-ran Song
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Quyen Thi Ngoc Hoang
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Seo Young Sim
- Department of New Biology, Daegu Gyeongbuk Institute of Science & Technology (DGIST), Daegu 42988,
Korea
| | - Min-Sik Kim
- Department of New Biology, Daegu Gyeongbuk Institute of Science & Technology (DGIST), Daegu 42988,
Korea
| | - Jeong-Il Kim
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
| | - Moon-Soo Soh
- Department of Molecular Biology, Sejong University, Seoul 05006,
Korea
| | - Soo Young Kim
- Department of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186,
Korea
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75
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A Two-Stage Culture Method for Zygotic Embryos Effectively Overcomes Constraints Imposed by Hypocotyl and Epicotyl Seed Dormancy in Paeonia ostii 'Fengdan'. PLANTS 2019; 8:plants8100356. [PMID: 31547000 PMCID: PMC6843118 DOI: 10.3390/plants8100356] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Revised: 08/30/2019] [Accepted: 09/18/2019] [Indexed: 11/17/2022]
Abstract
The effect of the exogenous hormone and light quality on breaking hypocotyl and epicotyl dormancy was studied. The results showed that the greatest percentage of hypocotyl dormancy breaking was observed with the Murashige and Skoog (MS) medium supplemented with or without 1.0 mg·L-1 gibberellin 3 (GA3), while ABA and endosperm greatly inhibited hypocotyl dormancy breaking. This suggests that hypocotyl dormancy of the Paeonia ostii 'Fengdan' embryo could be easily overcome by removing constraints of the surrounding endosperm, and ABA may be one of the constraint factors contained in the endosperm. The percentage of epicotyl dormancy breaking was also greatly affected by the concentration of 6-benzylaminopurine (BA) and GA3. Compared to BA by itself, adding GA3 to the medium containing BA highly enhanced epicotyl dormancy breaking, with the greatest percentage of epicotyl dormancy breaking in MS medium supplemented with both 0.5 mg·L-1 BA and 0.5-1.0 mg·L-1 GA3. The percentage of hypocotyl and epicotyl dormancy breaking was also affected by light and its quality. Red light-emitting diodes (LEDs) had the same effect as a dark condition on the hypocotyl dormancy breaking, while blue LEDs and a combination of red and blue LEDs had a negative effect on the hypocotyl dormancy breaking. Unexpectedly, blue LEDs greatly enhanced, whereas red LEDs inhibited, epicotyl dormancy breaking. Conclusively, a two-stage culture method was recommended for breaking the hypocotyl and epicotyl dormancy: hypocotyl dormancy was broken first using the MS medium without any plant growth regulators in the dark (25 °C), and epicotyl dormancy was subsequently broken with the MS medium supplemented with both 1.0 mg·L-1 GA3 and 0.5 mg·L-1 BA under blue light.
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76
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Li PC, Ma JJ, Zhou XM, Li GH, Zhao CZ, Xia H, Fan SJ, Wang XJ. Arabidopsis MDN1 Is Involved in the Establishment of a Normal Seed Proteome and Seed Germination. FRONTIERS IN PLANT SCIENCE 2019; 10:1118. [PMID: 31552080 PMCID: PMC6746975 DOI: 10.3389/fpls.2019.01118] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 08/14/2019] [Indexed: 05/25/2023]
Abstract
Seed germination and formation are the beginning and ending, respectively, of a plant life cycle. These two processes are under fine regulation by the internal genetic information. Previously, we demonstrated that Arabidopsis MIDASIN 1 (MDN1) is required for ribosome biogenesis, and its dysfunction leads to pleiotropic developmental phenotypes, including impaired embryogenesis and slow seed germination. In this study, we further found that the weak mutant of MDN1, mdn1-1, exhibits an increased seed size phenotype. Seed proteomic analysis reveals that a number of proteins involved in seed development and response to external environments are mis-regulated by the MDN1 dysfunction. Many 2S seed storage proteins (SSPs) and late embryogenesis abundant (LEA) proteins are over-accumulated in the dry seeds of mdn1-1. Further, some genes encoding seed storage reserves are also upregulated in mdn1-1 seedlings. More interestingly, abscisic acid-insensitive 5 (ABI5) is over-accumulated in mdn1-1 seeds, and the loss of its function partially rescues the low seed germination rate of mdn1-1. Together, this study further demonstrates that MDN1 is essential for establishing a normal seed proteome, and its mutation triggers ABI5-mediated repression of seed germination.
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Affiliation(s)
- Peng-Cheng Li
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, China
| | - Jun-Jie Ma
- College of Life Science, Shandong University, Qingdao, China
| | - Xi-Meng Zhou
- College of Life Sciences, Shandong Normal University, Jinan, China
| | - Guang-Hui Li
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, China
| | - Chuan-Zhi Zhao
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, China
| | - Han Xia
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, China
| | - Shou-Jin Fan
- College of Life Sciences, Shandong Normal University, Jinan, China
| | - Xing-Jun Wang
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, China
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77
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Huybrechts M, Cuypers A, Deckers J, Iven V, Vandionant S, Jozefczak M, Hendrix S. Cadmium and Plant Development: An Agony from Seed to Seed. Int J Mol Sci 2019; 20:ijms20163971. [PMID: 31443183 PMCID: PMC6718997 DOI: 10.3390/ijms20163971] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 08/08/2019] [Accepted: 08/09/2019] [Indexed: 12/19/2022] Open
Abstract
Anthropogenic pollution of agricultural soils with cadmium (Cd) should receive adequate attention as Cd accumulation in crops endangers human health. When Cd is present in the soil, plants are exposed to it throughout their entire life cycle. As it is a non-essential element, no specific Cd uptake mechanisms are present. Therefore, Cd enters the plant through transporters for essential elements and consequently disturbs plant growth and development. In this review, we will focus on the effects of Cd on the most important events of a plant's life cycle covering seed germination, the vegetative phase and the reproduction phase. Within the vegetative phase, the disturbance of the cell cycle by Cd is highlighted with special emphasis on endoreduplication, DNA damage and its relation to cell death. Furthermore, we will discuss the cell wall as an important structure in retaining Cd and the ability of plants to actively modify the cell wall to increase Cd tolerance. As Cd is known to affect concentrations of reactive oxygen species (ROS) and phytohormones, special emphasis is put on the involvement of these compounds in plant developmental processes. Lastly, possible future research areas are put forward and a general conclusion is drawn, revealing that Cd is agonizing for all stages of plant development.
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Affiliation(s)
- Michiel Huybrechts
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium
| | - Ann Cuypers
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium
| | - Jana Deckers
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium
| | - Verena Iven
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium
| | - Stéphanie Vandionant
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium
| | - Marijke Jozefczak
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium
| | - Sophie Hendrix
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, B-3590 Diepenbeek, Belgium.
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78
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Liu J, Li L, Yuan F, Chen M. Exogenous salicylic acid improves the germination of Limonium bicolor seeds under salt stress. PLANT SIGNALING & BEHAVIOR 2019; 14:e1644595. [PMID: 31331225 PMCID: PMC6768418 DOI: 10.1080/15592324.2019.1644595] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 07/05/2019] [Accepted: 07/11/2019] [Indexed: 05/04/2023]
Abstract
Salicylic acid (SA) may improve plant tolerance to abiotic stresses; however, little is known about the underlying mechanisms by which this is achieved. Here, we investigated the effects of exogenous SA application on seed germination in the halophyte Limonium bicolor (Kuntze) under salt stress. Specifically, we examined the effect of salt stress on seed germination, sugar and protein contents, amylase activity, and the contents of various hormones, both in the presence and absence of exogenous SA treatments. Germination was significantly suppressed by a 200 mM NaCl treatment but was significantly improved when 0.08 mM SA was concurrently applied. During germination, the seeds treated with SA had high levels of gibberellic acid (GA) and high levels of amylase and α-amylase activity, but low abscisic acid (ABA) contents. The SA treatment upregulated the expression of key genes involved in GA biosynthesis while downregulating those involved in ABA biosynthesis, thereby triggering a favorable hormonal balance between GA and ABA that enhanced seed germination under salt stress.
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Affiliation(s)
- Jing Liu
- College of Life Science, Shandong Normal University, Jinan, P.R. China
| | - Lingyu Li
- College of Life Science, Shandong Normal University, Jinan, P.R. China
| | - Fang Yuan
- College of Life Science, Shandong Normal University, Jinan, P.R. China
| | - Min Chen
- College of Life Science, Shandong Normal University, Jinan, P.R. China
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79
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Wu J, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Yamaguchi N, Ito T. Abscisic acid-dependent histone demethylation during postgermination growth arrest in Arabidopsis. PLANT, CELL & ENVIRONMENT 2019; 42:2198-2214. [PMID: 30859592 DOI: 10.1111/pce.13547] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Accepted: 03/03/2019] [Indexed: 05/22/2023]
Abstract
After germination, seedlings undergo growth arrest in response to unfavourable conditions, a critical adaptation enabling plants to survive harsh environments. The plant hormone abscisic acid (ABA) plays a key role in this arrest. To arrest growth, ABA-dependent transcription factors change gene expression patterns in a flexible and reversible manner. Although the control of gene expression has important roles in growth arrest, the epigenetic mechanisms in the response to ABA are not fully understood. Here, we show that the histone demethylases JUMONJI-C domain-containing protein 30 (JMJ30) and JMJ32 control ABA-mediated growth arrest in Arabidopsis thaliana. During the postgermination stage (2-3 days after germination), the ABA-dependent transcription factor ABA-insensitive3 (ABI3) activates the expression of JMJ30 in response to ABA. JMJ30 then removes a repressive histone mark, H3 lysine 27 trimethylation (H3K27me3), from the SNF1-related protein kinase 2.8 (SnRK2.8) promoter, and hence activates SnRK2.8 expression. SnRK2.8 encodes a kinase that activates ABI3 and is responsible for JMJ30- and JMJ32-mediated growth arrest. A feed-forward loop involving the ABI3 transcription factor, JMJ histone demethylases, and the SnRK2.8 kinase fine-tunes ABA-dependent growth arrest in the postgermination phase. Our findings highlight the importance of the histone demethylases in mediating adaptation of plants to the environment.
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Affiliation(s)
- Jinfeng Wu
- Division of Biological Science, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan
| | - Yasunori Ichihashi
- RIKEN BioResource Research Center, Tsukuba, 305-0074, Japan
- Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, Kawaguchi-shi, 332-0012, Japan
| | - Takamasa Suzuki
- Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, Kasugai, 487-8501, Japan
| | - Arisa Shibata
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
| | - Ken Shirasu
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
- Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan
| | - Nobutoshi Yamaguchi
- Division of Biological Science, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan
- Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, Kawaguchi-shi, 332-0012, Japan
| | - Toshiro Ito
- Division of Biological Science, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan
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80
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Ponnaiah M, Gilard F, Gakière B, El-Maarouf-Bouteau H, Bailly C. Regulatory actors and alternative routes for Arabidopsis seed germination are revealed using a pathway-based analysis of transcriptomic datasets. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 99:163-175. [PMID: 30868664 DOI: 10.1111/tpj.14311] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Revised: 02/07/2019] [Accepted: 03/05/2019] [Indexed: 06/09/2023]
Abstract
Regulation of seed germination by dormancy relies on a complex network of transcriptional and post-transcriptional modifications during seed imbibition that controls seed adaptive responses to environmental cues. High-throughput technologies have brought significant progress in the understanding of this phenomenon and have led to identify major regulators of seed germination, mostly by studying the behaviour of highly differentially expressed genes. However, the actual models of transcriptome analysis cannot catch additive effects of small variations of gene expression in individual signalling or metabolic pathways, which are also likely to control germination. Therefore, the comprehension of the molecular mechanism regulating germination is still incomplete and to gain knowledge about this process we have developed a pathway-based analysis of transcriptomic Arabidopsis datasets, to identify regulatory actors of seed germination. The method allowed quantifying the level of deregulation of a wide range of pathways in dormant versus non-dormant seeds. Clustering pathway deregulation scores of germinating and dormant seed samples permitted the identification of mechanisms involved in seed germination such as RNA transport or vitamin B6 metabolism, for example. Using this method, which was validated by metabolomics analysis, we also demonstrated that Col and Cvi seeds follow different metabolic routes for completing germination, demonstrating the genetic plasticity of this process. We finally provided an extensive basis of analysed transcriptomic datasets that will allow further identification of mechanisms controlling seed germination.
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Affiliation(s)
- Maharajah Ponnaiah
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, F-75005, Paris, France
| | - Françoise Gilard
- Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université d'Evry, Université Paris-Diderot, Université Paris-Sud, Sorbonne Paris-Cité, Saclay Plant Sciences, Orsay, France
| | - Bertrand Gakière
- Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université d'Evry, Université Paris-Diderot, Université Paris-Sud, Sorbonne Paris-Cité, Saclay Plant Sciences, Orsay, France
| | | | - Christophe Bailly
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, F-75005, Paris, France
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81
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Unraveling Molecular and Genetic Studies of Wheat (Triticum aestivum L.) Resistance against Factors Causing Pre-Harvest Sprouting. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9030117] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Pre-harvest sprouting (PHS) is one of the most important factors having adverse effects on yield and grain quality all over the world, particularly in wet harvest conditions. PHS is controlled by both genetic and environmental factors and the interaction of these factors. Breeding varieties with high PHS resistance have important implications for reducing yield loss and improving grain quality. The rapid advancements in the wheat genomic database along with transcriptomic and proteomic technologies have broadened our knowledge for understanding the regulatory mechanism of PHS resistance at transcriptomic and post-transcriptomic levels. In this review, we have described in detail the recent advancements on factors influencing PHS resistance, including grain color, seed dormancy, α-amylase activity, plant hormones (especially abscisic acid and gibberellin), and QTL/genes, which are useful for mining new PHS-resistant genes and developing new molecular markers for multi-gene pyramiding breeding of wheat PHS resistance, and understanding the complicated regulatory mechanism of PHS resistance.
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Yang L, Wang S, Sun L, Ruan M, Li S, He R, Zhang W, Liang C, Wang X, Bi Y. Involvement of G6PD5 in ABA response during seed germination and root growth in Arabidopsis. BMC PLANT BIOLOGY 2019; 19:44. [PMID: 30700259 PMCID: PMC6354342 DOI: 10.1186/s12870-019-1647-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 01/11/2019] [Indexed: 05/15/2023]
Abstract
BACKGROUND Glucose-6-phosphate dehydrogenase (G6PDH or G6PD) functions in supply of NADPH, which is required for plant defense responses to stresses. However, whether G6PD functions in the abscisic acid (ABA) signaling pathway remains to be elucidated. In this study, we investigated the involvement of the cytosolic G6PD5 in the ABA signaling pathway in Arabidopsis. RESULTS We characterized the Arabidopsis single null mutant g6pd5. Phenotypic analysis showed that the mutant is more sensitive to ABA during seed germination and root growth, whereas G6PD5-overexpressing plants are less sensitive to ABA compared to wild type (WT). Furthermore, ABA induces excessive accumulation of reactive oxygen species (ROS) in mutant seeds and seedlings. G6PD5 participates in the reduction of H2O2 to H2O in the ascorbate-glutathione cycle. In addition, we found that G6PD5 suppressed the expression of Abscisic Acid Insensitive 5 (ABI5), the major ABA signaling component in dormancy control. When G6PD5 was overexpressed, the ABA signaling pathway was inactivated. Consistently, G6PD5 negatively modulates ABA-blocked primary root growth in the meristem and elongation zones. Of note, the suppression of root elongation by ABA is triggered by the cell cycle B-type cyclin CYCB1. CONCLUSIONS This study showed that G6PD5 is involved in the ABA-mediated seed germination and root growth by suppressing ABI5.
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Affiliation(s)
- Lei Yang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Shengwang Wang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Lili Sun
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Mengjiao Ruan
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Sufang Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Rui He
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Wenya Zhang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Cuifang Liang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
| | - Xiaomin Wang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, Qinghai 810016 People’s Republic of China
| | - Yurong Bi
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000 People’s Republic of China
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Li Z, Gao Y, Zhang Y, Lin C, Gong D, Guan Y, Hu J. Reactive Oxygen Species and Gibberellin Acid Mutual Induction to Regulate Tobacco Seed Germination. FRONTIERS IN PLANT SCIENCE 2018; 9:1279. [PMID: 30356911 PMCID: PMC6190896 DOI: 10.3389/fpls.2018.01279] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Accepted: 08/15/2018] [Indexed: 05/20/2023]
Abstract
Seed germination is a complex process controlled by various mechanisms. To examine the potential contribution of reactive oxygen species (ROS) and gibberellin acid (GA) in regulating seed germination, diphenylene iodonium chloride (DPI) and uniconazole (Uni), as hydrogen peroxide (H2O2) and GA synthesis inhibitor, respectively, were exogenously applied on tobacco seeds using the seed priming method. Seed priming with DPI or Uni decreased germination percentage as compared with priming with H2O, especially the DPI + Uni combination. H2O2 and GA completely reversed the inhibition caused by DPI or Uni. The germination percentages with H2O2 + Uni and GA + DPI combinations kept the same level as with H2O. Meanwhile, GA or H2O2 increased GA content and deceased ABA content through corresponding gene expressions involving homeostasis and signal transduction. In addition, the activation of storage reserve mobilization and the enhancement of soluble sugar content and isocitrate lyase (ICL) activity were also induced by GA or H2O2. These results strongly suggested that H2O2 and GA were essential for tobacco seed germination and by downregulating the ABA/GA ratio and inducing reserve composition mobilization mutually promoted seed germination. Meanwhile, ICL activity was jointly enhanced by a lower ABA/GA ratio and a higher ROS concentration.
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Affiliation(s)
| | | | | | | | | | - Yajing Guan
- Seed Science Center, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
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Bi L, Weng L, Jiang Z, Xiao H. The tomato IQD gene SUN24 regulates seed germination through ABA signaling pathway. PLANTA 2018; 248:919-931. [PMID: 29968062 DOI: 10.1007/s00425-018-2950-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Accepted: 06/28/2018] [Indexed: 05/14/2023]
Abstract
Gene expression and functional analysis of the tomato IQD gene SUN24 revealed that it regulates seed germination through ABA signaling pathway. Ca2+ signaling plays crucial roles in diverse biological processes including ABA-mediated seed germination. The plant-specific IQ67-Domain (IQD) proteins are hypothesized to regulate Ca2+ signaling and plant development through interactions with calmodulins (CaMs). Despite a few IQD genes have been identified to regulate herbivore resistance and plant growth and development, the molecular functions of most members in this gene family are not known. In this study, we characterized the role of the tomato IQD gene SUN24 in seed germination. Using pSUN24::GUS reporter lines and by quantitative reverse transcription PCR analysis, we show that SUN24 is mainly expressed in the roots, flowers, young fruits, seeds, and other young developing tissues, and its expression is repressed by ABA treatments. Functional analysis shows that knockdown of SUN24 expression by RNA interference delays seed germination, whereas overexpression of this IQD gene promotes germination. Further gene expression analysis reveals that SUN24 negatively regulates expression of two key ABA signaling genes Solanum lycopersicum ABA-insensitive 3 (SlABI3) and SlABI5 in germinating seeds. Moreover, SUN24, targeting to microtubule and nuclear bodies, can interact with four tomato CaMs (SlCaM1, 2, 3, and 6) in yeast cells. Our results demonstrate that SUN24 regulates seed germination through ABA signaling pathway, expanding our understanding of the roles of the IQD protein family members in plant physiological processes.
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Affiliation(s)
- Lulu Bi
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China
- University of the Chinese Academy of Sciences, No. 19A Yuquanlu, Beijing, 100049, China
| | - Lin Weng
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China
| | - Zhuyan Jiang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China
- University of the Chinese Academy of Sciences, No. 19A Yuquanlu, Beijing, 100049, China
| | - Han Xiao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China.
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Aguirre M, Kiegle E, Leo G, Ezquer I. Carbohydrate reserves and seed development: an overview. PLANT REPRODUCTION 2018; 31:263-290. [PMID: 29728792 DOI: 10.1007/s00497-018-0336-3] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 04/23/2018] [Indexed: 06/08/2023]
Abstract
Seeds are one of the most important food sources, providing humans and animals with essential nutrients. These nutrients include carbohydrates, lipids, proteins, vitamins and minerals. Carbohydrates are one of the main energy sources for both plant and animal cells and play a fundamental role in seed development, human nutrition and the food industry. Many studies have focused on the molecular pathways that control carbohydrate flow during seed development in monocot and dicot species. For this reason, an overview of seed biodiversity focused on the multiple metabolic and physiological mechanisms that govern seed carbohydrate storage function in the plant kingdom is required. A large number of mutants affecting carbohydrate metabolism, which display defective seed development, are currently available for many plant species. The physiological, biochemical and biomolecular study of such mutants has led researchers to understand better how metabolism of carbohydrates works in plants and the critical role that these carbohydrates, and especially starch, play during seed development. In this review, we summarize and analyze the newest findings related to carbohydrate metabolism's effects on seed development, pointing out key regulatory genes and enzymes that influence seed sugar import and metabolism. Our review also aims to provide guidelines for future research in the field and in this way to assist seed quality optimization by targeted genetic engineering and classical breeding programs.
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Affiliation(s)
- Manuel Aguirre
- Dipartimento di BioScienze, Università degli Studi di Milano, 20133, Milan, Italy
- FNWI, University of Amsterdam, 1098 XH, Amsterdam, The Netherlands
| | - Edward Kiegle
- Dipartimento di BioScienze, Università degli Studi di Milano, 20133, Milan, Italy
| | - Giulia Leo
- Dipartimento di BioScienze, Università degli Studi di Milano, 20133, Milan, Italy
| | - Ignacio Ezquer
- Dipartimento di BioScienze, Università degli Studi di Milano, 20133, Milan, Italy.
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86
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Lazare S, Burgos A, Brotman Y, Zaccai M. The metabolic (under)groundwork of the lily bulb toward sprouting. PHYSIOLOGIA PLANTARUM 2018; 163:436-449. [PMID: 29274128 DOI: 10.1111/ppl.12685] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2017] [Accepted: 12/19/2017] [Indexed: 06/07/2023]
Abstract
Large bulbs of Lilium longiflorum have an obligatory cold requirement to flower. Bulb cooling is widely used to induce and accelerate flowering. However, in-depth investigations of the effect of bulb cooling on major landmarks of plant development are lacking. It has been demonstrated that low temperature induces carbohydrate degradation, yet integrative studies on metabolic changes occurring in the bulb are not available. We detected that cold exposure mainly hastened bulb sprouting, rather than floral transition or blooming. Metabolite profiling of cooled and non-cooled bulbs was carried out, revealing cold-induced accumulation of soluble sugars, lipids and specific amino acids, and a significant reduction in tricarboxylic acid (TCA)-cycle elements. We observed that metabolic pathways located in the cytosol - including glycolysis, lipid synthesis and part of the gamma-Aminobutyric acid (GABA) shunt - were enhanced by cold exposure, while mitochondrial metabolism - namely the TCA cycle - was reduced by cold. We suggest a physiological model accounting for this metabolic discrepancy.
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Affiliation(s)
- Silit Lazare
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
| | - Asdrubal Burgos
- Laboratorio de Biotecnología, Centro Universitario de Ciencias Biológicas y Agropecuarias, Universidad de Guadalajara, CP 15110, Zapopan, Jalisco, Mexico
| | - Yariv Brotman
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
| | - Michele Zaccai
- Department of Life Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel
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87
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Humphries T, Chauhan BS, Florentine SK. Environmental factors effecting the germination and seedling emergence of two populations of an aggressive agricultural weed; Nassella trichotoma. PLoS One 2018; 13:e0199491. [PMID: 29975730 PMCID: PMC6033418 DOI: 10.1371/journal.pone.0199491] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2018] [Accepted: 06/10/2018] [Indexed: 11/19/2022] Open
Abstract
Nassella trichotoma (Nees) Hack. ex Arechav. (Serrated tussock) is an aggressive globally significant weed to agricultural and natural ecosystems. Herbicide resistant populations of this C3 perennial weed have emerged, increasing the need for effective wide-scale cultural control strategies. A thorough seed ecology study on two spatially distinct populations of N. trichotoma was conducted on this weed to identify differences in important environmental factors (drought, salinity, alternating temperature, photoperiod, burial depth, soil pH, artificial seed aging, and radiant heat) which influence seed dormancy. Seeds were collected from two spatially distinct populations; Gnarwarre (38 O 9' 8.892'' S, 144 O 7' 38.784'' E) and Ingliston (37O 40' 4.44'' S, 144 O 18' 39.24'' E) in December 2016 and February 2017, respectively. Twenty sterilized seeds were placed into Petri dishes lined with a single Whatman® No. 10 filter paper dampened with the relevant treatments solution and then incubated under the identified optimal alternating temperature and photoperiod regime of 25°C/15°C (light/dark, 12h/12h). For the burial depth treatment, 20 seeds were placed into plastic containers (10cm in diameter and 6cm in depth) and buried to the relevant depth in sterilized soil. All trials were monitored for 30 days and germination was indicated by 5mm exposure of the radicle and emergence was indicated by the exposure of the cotyledon. Each treatment had three replicates for each population, and each treatment was repeated to give a total of six replicates per treatment, per population. Nassella trichotoma was identified to be non-photoblastic, with germination (%) being similar under alternating light and dark and complete darkness conditions. With an increase of osmotic potential and salinity, a significant decline in germination was observed. There was no effect of pH on germination. Exposure to a radiant heat of 120°C for 9 minutes resulted in the lowest germination in the Ingliston population (33%) and the Gnarwarre population (60%). In the burial depth treatment, the Ingliston population and the Gnarwarre population had highest emergence of 75% and 80%, respectively at a depth of 1cm. Variation between the two populations was observed for the burial depth treatments; Gnarwarre had greater emergence than Ingliston from the 4cm burial depth, while Ingliston had greater emergence at the soil surface than Gnarwarre. The Gnarwarre population had greater overall germination than Ingliston, which could be attributed to the greater seed mass (0.86mg compared to 0.76mg, respectively). This study identifies that spatial variations in N. trichotoma's seed ecology are present between spatially distinct populations.
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Affiliation(s)
- Talia Humphries
- Centre for Environmental Management, Faculty of Science and Technology, Federation University Australia, Mount Helen, Victoria, Australia
| | - Bhagirath S. Chauhan
- Centre for Plant Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Toowoomba, Queensland, Australia
| | - Singarayer K. Florentine
- Centre for Environmental Management, Faculty of Science and Technology, Federation University Australia, Mount Helen, Victoria, Australia
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88
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Wang L, Waters MT, Smith SM. Karrikin-KAI2 signalling provides Arabidopsis seeds with tolerance to abiotic stress and inhibits germination under conditions unfavourable to seedling establishment. THE NEW PHYTOLOGIST 2018; 219:605-618. [PMID: 29726620 DOI: 10.1111/nph.15192] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 03/27/2018] [Indexed: 05/06/2023]
Abstract
The control of seed germination in response to environmental conditions is important for plant success. We investigated the role of the karrikin receptor KARRIKIN INSENSITIVE2 (KAI2) in the response of Arabidopsis seeds to osmotic stress, salinity and high temperature. Germination of the kai2 mutant was examined in response to NaCl, mannitol and elevated temperature. The effect of karrikin on germination of wild-type seeds, hypocotyl elongation and the expression of karrikin-responsive genes was also examined in response to such stresses. The kai2 seeds germinated less readily than wild-type seeds and germination was more sensitive to inhibition by abiotic stress. Karrikin-induced KAI2 signalling stimulated germination of wild-type seeds under favourable conditions, but, surprisingly, inhibited germination in the presence of osmolytes or at elevated temperature. By contrast, GA stimulated germination of wild-type seeds and mutants under all conditions. Karrikin induced expression of DLK2 and KUF1 genes and inhibited hypocotyl elongation independently of osmotic stress. Under mild osmotic stress, karrikin enhanced expression of DREB2A, WRKY33 and ERF5 genes, but not ABA signalling genes. Thus, the karrikin-KAI2 signalling system can protect against abiotic stress, first by providing stress tolerance, and second by inhibiting germination under conditions unfavourable to seedling establishment.
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Affiliation(s)
- Lu Wang
- School of Natural Sciences, University of Tasmania, Tasmania, 7001, Australia
| | - Mark T Waters
- School of Molecular Sciences and Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, 6009, Australia
| | - Steven M Smith
- School of Natural Sciences, University of Tasmania, Tasmania, 7001, Australia
- Institute of Genetics and Developmental Biology, Chinese Academy of sciences, Beijing, 100101, China
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89
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Nishimura N, Tsuchiya W, Moresco JJ, Hayashi Y, Satoh K, Kaiwa N, Irisa T, Kinoshita T, Schroeder JI, Yates JR, Hirayama T, Yamazaki T. Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme. Nat Commun 2018; 9:2132. [PMID: 29875377 PMCID: PMC5989226 DOI: 10.1038/s41467-018-04437-9] [Citation(s) in RCA: 101] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Accepted: 05/01/2018] [Indexed: 12/23/2022] Open
Abstract
Abscisic acid (ABA) regulates abiotic stress and developmental responses including regulation of seed dormancy to prevent seeds from germinating under unfavorable environmental conditions. ABA HYPERSENSITIVE GERMINATION1 (AHG1) encoding a type 2C protein phosphatase (PP2C) is a central negative regulator of ABA response in germination; however, the molecular function and regulation of AHG1 remain elusive. Here we report that AHG1 interacts with DELAY OF GERMINATION1 (DOG1), which is a pivotal positive regulator in seed dormancy. DOG1 acts upstream of AHG1 and impairs the PP2C activity of AHG1 in vitro. Furthermore, DOG1 has the ability to bind heme. Binding of DOG1 to AHG1 and heme are independent processes, but both are essential for DOG1 function in vivo. Our study demonstrates that AHG1 and DOG1 constitute an important regulatory system for seed dormancy and germination by integrating multiple environmental signals, in parallel with the PYL/RCAR ABA receptor-mediated regulatory system. The hormone abscisic acid (ABA) prevents seeds from germination when conditions are not suitable. Here the authors show that DOG1, a positive regulator of germination, impairs ABA signaling via genetic and physical interactions with the AHG1 phosphatase and that DOG1 binding to heme is required for this activity.
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Affiliation(s)
- Noriyuki Nishimura
- Radiation Breeding Division, Institute of Crop Science, National Agriculture and Food Research Organization, 2425 Kamimurata, Hitachiohmiya, Ibaraki, 319-2293, Japan. .,Division of Basic Research, Institute of Crop Science, National Agriculture and Food Research Organization, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan.
| | - Wataru Tsuchiya
- Structural Biology Team, Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-8602, Japan
| | - James J Moresco
- Department of Molecular Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Yuki Hayashi
- Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602, Japan
| | - Kouji Satoh
- Radiation Breeding Division, Institute of Crop Science, National Agriculture and Food Research Organization, 2425 Kamimurata, Hitachiohmiya, Ibaraki, 319-2293, Japan
| | - Nahomi Kaiwa
- Radiation Breeding Division, Institute of Crop Science, National Agriculture and Food Research Organization, 2425 Kamimurata, Hitachiohmiya, Ibaraki, 319-2293, Japan
| | - Tomoko Irisa
- Radiation Breeding Division, Institute of Crop Science, National Agriculture and Food Research Organization, 2425 Kamimurata, Hitachiohmiya, Ibaraki, 319-2293, Japan
| | - Toshinori Kinoshita
- Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602, Japan.,Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, 464-8602, Japan
| | - Julian I Schroeder
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0116, USA
| | - John R Yates
- Department of Molecular Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Takashi Hirayama
- Institute of Plant Science and Resources, Okayama University, 2-20-1 Chuo, Kurashiki, Okayama, 710-0046, Japan
| | - Toshimasa Yamazaki
- Structural Biology Team, Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-8602, Japan
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Zhao X, Guo X, Tang X, Zhang H, Wang M, Kong Y, Zhang X, Zhao Z, Lv M, Li L. Misregulation of ER-Golgi Vesicle Transport Induces ER Stress and Affects Seed Vigor and Stress Response. FRONTIERS IN PLANT SCIENCE 2018; 9:658. [PMID: 29868102 PMCID: PMC5968616 DOI: 10.3389/fpls.2018.00658] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 04/30/2018] [Indexed: 05/20/2023]
Abstract
Seeds of higher plants accumulate numerous storage proteins to use as nitrogen resources for early plant development. Seed storage proteins (SSPs) are synthesized as large precursors on the rough endoplasmic reticulum (rER), and are delivered to protein storage vacuoles (PSVs) via vesicle transport, where they are processed to mature forms. We previously identified an Arabidopsis ER-localized tethering complex, MAG2 complex, which might be involved in Golgi to ER retrograde transport. The MAG2 complex is composed of 4 subunits, MAG2, MIP1, MIP2, and MIP3. Mutants with defective alleles for these subunits accumulated SSP precursors inside the ER lumen. Here, we report that the mag2-1 mip3-1 and mip2-1 mip3-1 double mutant have more serious vesicle transport defects than the mag2-1, mip2-1, and mip3-1 single mutants, since they accumulate more SSP precursors than the corresponding single mutants, and ER stress is more severe than the single mutants. The mag2-1 mip3-1 and mip2-1 mip3-1 double mutants show growth and developmental defects rather than the single mutants. Both single and double mutant seeds are found to have lower protein content and decreased germinating vigor than wild type seeds. All the mutants are sensitive to abscisic acid (ABA) and salt stress, and exhibit alteration in ABA signaling pathway. Our study clarified that ER-Golgi vesicle transport affects seed vigor through controlling seed protein quality and content, as well as plant response to environmental stress via influencing ABA signaling pathway.
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Affiliation(s)
- Xiaonan Zhao
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Xiufen Guo
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Xiaofei Tang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
- Institute of Soybean Research, Heilongjiang Provincial Academy of Agricultural Sciences, Harbin, China
| | - Hailong Zhang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Mingjing Wang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Yun Kong
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Xiaomeng Zhang
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Zhenjie Zhao
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Min Lv
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
| | - Lixin Li
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin, China
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Xiong W, Ye T, Yao X, Liu X, Ma S, Chen X, Chen ML, Feng YQ, Wu Y. The dioxygenase GIM2 functions in seed germination by altering gibberellin production in Arabidopsis. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2018; 60:276-291. [PMID: 29205921 DOI: 10.1111/jipb.12619] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 11/30/2017] [Indexed: 05/28/2023]
Abstract
The phytohormones gibberellic acid (GA) and abscisic acid (ABA) antagonistically control seed germination. High levels of GA favor seed germination, whereas high levels of ABA hinder this process. The direct relationship between GA biosynthesis and seed germination ability need further investigation. Here, we identified the ABA-insensitive gain-of-function mutant germination insensitive to ABA mutant 2 (gim2) by screening a population of XVE T-DNA-tagged mutant lines. Based on two loss-of-function gim2-ko mutant lines, the disruption of GIM2 function caused a delay in seed germination. By contrast, upregulation of GIM2 accelerated seed germination, as observed in transgenic lines overexpressing GIM2 (OE). We detected a reduction in endogenous bioactive GA levels and an increase in endogenous ABA levels in the gim2-ko mutants compared to wild type. Conversely, the OE lines had increased endogenous bioactive GA levels and decreased endogenous ABA levels. The expression levels of a set of GA- and/or ABA-related genes were altered in both the gim2-ko mutants and the OE lines. We confirmed that GIM2 has dioxygenase activity using an in vitro enzyme assay, observing that GIM2 can oxidize GA12 . Hence, our characterization of GIM2 demonstrates that it plays a role in seed germination by affecting the GA metabolic pathway in Arabidopsis.
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Affiliation(s)
- Wei Xiong
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Tiantian Ye
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072, China
| | - Xuan Yao
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Xiong Liu
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Sheng Ma
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Xi Chen
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Ming-Luan Chen
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072, China
| | - Yu-Qi Feng
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), Department of Chemistry, Wuhan University, Wuhan 430072, China
| | - Yan Wu
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China
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92
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Zhang Z, Zhuo X, Zhao K, Zheng T, Han Y, Yuan C, Zhang Q. Transcriptome Profiles Reveal the Crucial Roles of Hormone and Sugar in the Bud Dormancy of Prunus mume. Sci Rep 2018; 8:5090. [PMID: 29572446 PMCID: PMC5865110 DOI: 10.1038/s41598-018-23108-9] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 03/01/2018] [Indexed: 01/09/2023] Open
Abstract
Bud dormancy transition is a vital developmental process for perennial plant survival. The process is precisely regulated by diverse endogenous genetic factors and environmental cues, but the mechanisms are not yet fully understood. Prunus mume is an ideal crop for bud dormancy analysis because of its early spring-flowering characteristics and small sequenced genome. Here, we analyzed the transcriptome profiles at the three endodormancy stages and natural flush stage using RNA sequencing combined with phytohormone and sugar content measurements. Significant alterations in hormone contents and carbohydrate metabolism have been observed, and α-amylases, Glucan Hydrolase Family 17 and diphosphate-glycosyltransferase family might play crucial roles in the interactions between hormones and sugars. The following hypothetical model for understanding the molecular mechanism of bud dormancy in Prunus mume is proposed: low temperatures exposure induces the significant up-regulation of eight C-repeat binding factor genes, which directly promotes all six dormancy-associated MADS-box genes, resulting in dormancy establishment. The prolonged cold and/or subsequently increasing temperature then decreases the expression levels of these two gene families, which alleviates the inhibition of FLOWERING LOCUS T and reopens the growth-promoting pathway, resulting in dormancy release and the initiation of the bud break process.
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Affiliation(s)
- Zhiyong Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - XiaoKang Zhuo
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Kai Zhao
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Tangchun Zheng
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Yu Han
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Cunquan Yuan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Qixiang Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
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93
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Bai B, Novák O, Ljung K, Hanson J, Bentsink L. Combined transcriptome and translatome analyses reveal a role for tryptophan-dependent auxin biosynthesis in the control of DOG1-dependent seed dormancy. THE NEW PHYTOLOGIST 2018; 217:1077-1085. [PMID: 29139127 DOI: 10.1111/nph.14885] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Accepted: 10/07/2017] [Indexed: 05/11/2023]
Abstract
The importance of translational regulation during Arabidopsis seed germination has been shown previously. Here the role of transcriptional and translational regulation during seed imbibition of the very dormant DELAY OF GERMINATION 1 (DOG1) near-isogenic line was investigated. Polysome profiling was performed on dormant and after-ripened seeds imbibed for 6 and 24 h in water and in the transcription inhibitor cordycepin. Transcriptome and translatome changes were investigated. Ribosomal profiles of after-ripened seeds imbibed in cordycepin mimic those of dormant seeds. The polysome occupancy of mRNA species is not affected by germination inhibition, either as a result of seed dormancy or as a result of cordycepin treatment, indicating the importance of the regulation of transcript abundance. The expression of auxin metabolism genes is discriminative during the imbibition of after-ripened and dormant seeds, which is confirmed by altered concentrations of indole-3-acetic acid conjugates and precursors.
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Affiliation(s)
- Bing Bai
- Molecular Plant Physiology, Institute of Environmental Biology, Utrecht University, 3584 CH, Utrecht, the Netherlands
- Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, 6708 PB, Wageningen, the Netherlands
| | - Ondřej Novák
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83, Umeå, Sweden
| | - Karin Ljung
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83, Umeå, Sweden
| | - Johannes Hanson
- Molecular Plant Physiology, Institute of Environmental Biology, Utrecht University, 3584 CH, Utrecht, the Netherlands
- Umeå Plant Science Center, Department of Plant Physiology, Umeå University, SE-901 87, Umeå, Sweden
| | - Leónie Bentsink
- Molecular Plant Physiology, Institute of Environmental Biology, Utrecht University, 3584 CH, Utrecht, the Netherlands
- Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, 6708 PB, Wageningen, the Netherlands
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94
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Taurino M, Costantini S, De Domenico S, Stefanelli F, Ruano G, Delgadillo MO, Sánchez-Serrano JJ, Sanmartín M, Santino A, Rojo E. SEIPIN Proteins Mediate Lipid Droplet Biogenesis to Promote Pollen Transmission and Reduce Seed Dormancy. PLANT PHYSIOLOGY 2018; 176:1531-1546. [PMID: 29203558 PMCID: PMC5813562 DOI: 10.1104/pp.17.01430] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Accepted: 11/30/2017] [Indexed: 05/08/2023]
Abstract
Lipid droplets (LDs) are ubiquitous organelles in plant cells, but their physiological roles are largely unknown. To gain insight into the function of LDs in plants, we have characterized the Arabidopsis homologs of SEIPIN proteins, which are crucial factors for LD biogenesis in yeast and animals. SEIPIN1 is expressed almost exclusively in embryos, while SEIPIN2 and SEIPIN3 have broader expression profiles with maximal levels in embryos and pollen, where LDs accumulate most abundantly. Genetic analysis demonstrates that all three SEIPINs contribute to proper LD biogenesis in embryos, whereas in pollen, only SEIPIN2 and SEIPIN3 play a significant role. The double seipin2 seipin3 and triple seipin mutants accumulate extremely enlarged LDs in seeds and pollen, which hinders their subsequent mobilization during germination. Interestingly, electron microscopy analysis reveals the presence of nuclear LDs attached to type I nucleoplasmic reticulum in triple seipin mutant embryos, supporting that SEIPINs are essential for maintaining the correct polarity of LD budding at the nuclear envelope, restricting it to the outer membrane. In pollen, the perturbations in LD biogenesis and turnover are coupled to reduced germination in vitro and with lower fertilization efficiency in vivo. In seeds, germination per se is not affected in seipin2 seipin3 and triple seipin mutants, but there is a striking increase in seed dormancy levels. Our findings reveal the relevance of SEIPIN-dependent LD biogenesis in pollen transmission and in adjusting the timing of seed germination, two key adaptive traits of great importance in agriculture.
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Affiliation(s)
- Marco Taurino
- Institute of Sciences of Food Production C.N.R. Unit of Lecce, via Monteroni, 73100 Lecce, Italy
| | - Sara Costantini
- Institute of Sciences of Food Production C.N.R. Unit of Lecce, via Monteroni, 73100 Lecce, Italy
- Centro Nacional de Biotecnología-CSIC, Cantoblanco, E-28049 Madrid, Spain
| | - Stefania De Domenico
- Institute of Sciences of Food Production C.N.R. Unit of Lecce, via Monteroni, 73100 Lecce, Italy
| | - Francesco Stefanelli
- Institute of Sciences of Food Production C.N.R. Unit of Lecce, via Monteroni, 73100 Lecce, Italy
- Centro Nacional de Biotecnología-CSIC, Cantoblanco, E-28049 Madrid, Spain
| | - Guillermo Ruano
- Centro Nacional de Biotecnología-CSIC, Cantoblanco, E-28049 Madrid, Spain
- Universidad Politécnica de Madrid, E-28223 Madrid, Spain
| | | | | | - Maite Sanmartín
- Centro Nacional de Biotecnología-CSIC, Cantoblanco, E-28049 Madrid, Spain
| | - Angelo Santino
- Institute of Sciences of Food Production C.N.R. Unit of Lecce, via Monteroni, 73100 Lecce, Italy
- Address correspondence to or
| | - Enrique Rojo
- Centro Nacional de Biotecnología-CSIC, Cantoblanco, E-28049 Madrid, Spain
- Address correspondence to or
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95
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Lin JS, Kuo CC, Yang IC, Tsai WA, Shen YH, Lin CC, Liang YC, Li YC, Kuo YW, King YC, Lai HM, Jeng ST. MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2018; 9:68. [PMID: 29449855 PMCID: PMC5799662 DOI: 10.3389/fpls.2018.00068] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Accepted: 01/12/2018] [Indexed: 05/21/2023]
Abstract
Global warming is causing a negative impact on plant growth and adversely impacts on crop yield. MicroRNAs (miRNAs) are critical in regulating the expression of genes involved in plant development as well as defense responses. The effects of miRNAs on heat-stressed Arabidopsis warrants further investigation. Heat stress increased the expression of miR160 and its precursors but considerably reduced that of its targets, ARF10, ARF16, and ARF17. To study the roles of miR160 during heat stress, transgenic Arabidopsis plants overexpressing miR160 precursor a (160OE) and artificial miR160 (MIM160), which mimics an inhibitor of miR160, were created. T-DNA insertion mutants of miR160 targets were also used to examine their tolerances to heat stress. Results presented that overexpressing miR160 improved seed germination and seedling survival under heat stress. The lengths of hypocotyl elongation and rachis were also longer in 160OE than the wild-type (WT) plants under heat stress. Interestingly, MIM160 plants showed worse adaption to heat. In addition, arf10, arf16, and arf17 mutants presented similar phenotypes to 160OE under heat stress to advance abilities of thermotolerance. Moreover, transcriptome and qRT-PCR analyses revealed that HSP17.6A, HSP17.6II, HSP21, and HSP70B expression levels were regulated by heat in 160OE, MIM160, arf10, arf16, and arf17 plants. Hence, miR160 altered the expression of the heat shock proteins and plant development to allow plants to survive heat stress.
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Affiliation(s)
- Jeng-Shane Lin
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan
| | - Chia-Chia Kuo
- Department of Life Science, Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - I-Chu Yang
- Department of Life Science, Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Wei-An Tsai
- Department of Crop Environment, Hualien District Agricultural Research and Extension Station, Council of Agriculture, Hualien, Taiwan
| | - Yu-Hsing Shen
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Chih-Ching Lin
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Yi-Chen Liang
- Department of Life Sciences, National Chung Hsing University, Taichung, Taiwan
| | - Yu-Chi Li
- Department of Life Science, Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Yun-Wei Kuo
- Department of Life Science, Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Yu-Chi King
- Department of Life Science, Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Hsi-Mei Lai
- Department of Agricultural Chemistry, National Taiwan University, Taipei, Taiwan
| | - Shih-Tong Jeng
- Department of Life Science, Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
- *Correspondence: Shih-Tong Jeng
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96
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Salem MA, Li Y, Wiszniewski A, Giavalisco P. Regulatory-associated protein of TOR (RAPTOR) alters the hormonal and metabolic composition of Arabidopsis seeds, controlling seed morphology, viability and germination potential. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 92:525-545. [PMID: 28845535 DOI: 10.1111/tpj.13667] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Revised: 08/04/2017] [Accepted: 05/18/2017] [Indexed: 06/07/2023]
Abstract
Target of Rapamycin (TOR) is a positive regulator of growth and development in all eukaryotes, which positively regulates anabolic processes like protein synthesis, while repressing catabolic processes, including autophagy. To better understand TOR function we decided to analyze its role in seed development and germination. We therefore performed a detailed phenotypic analysis using mutants of the REGULATORY-ASSOCIATED PROTEIN OF TOR 1B (RAPTOR1B), a conserved TOR interactor, acting as a scaffold protein, which recruits substrates for the TOR kinase. Our results show that raptor1b plants produced seeds that were delayed in germination and less resistant to stresses, leading to decreased viability. These physiological phenotypes were accompanied by morphological changes including decreased seed-coat pigmentation and reduced production of seed-coat mucilage. A detailed molecular analysis revealed that many of these morphological changes were associated with significant changes of the metabolic content of raptor1b seeds, including elevated levels of free amino acids, as well as reduced levels of protective secondary metabolites and storage proteins. Most of these observed changes were accompanied by significantly altered phytohormone levels in the raptor1b seeds, with increases in abscisic acid, auxin and jasmonic acid, which are known to inhibit germination. Delayed germination and seedling growth, observed in the raptor1b seeds, could be partially restored by the exogenous supply of gibberellic acid, indicating that TOR is at the center of a regulatory hub controlling seed metabolism, maturation and germination.
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Affiliation(s)
- Mohamed A Salem
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, Kasr El-Aini Street, Cairo, 11562, Egypt
| | - Yan Li
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Andrew Wiszniewski
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Patrick Giavalisco
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
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97
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Luxmi R, Garg R, Srivastava S, Sane AP. Expression of the SIN3 homologue from banana, MaSIN3, suppresses ABA responses globally during plant growth in Arabidopsis. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 264:69-82. [PMID: 28969804 DOI: 10.1016/j.plantsci.2017.08.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2017] [Revised: 08/12/2017] [Accepted: 08/26/2017] [Indexed: 06/07/2023]
Abstract
The SIN3 family of co-repressors is a family of highly conserved eukaryotic repressor proteins that regulates diverse functions in yeasts and animals but remains largely uncharacterized functionally even in plants like Arabidopsis. The sole SIN3 homologue in banana, MaSIN3, was identified as a 1408 amino acids, nuclear localized protein conserved to other SIN3s in the PAH, HID and HCR domains. Interestingly, MaSIN3 over-expression in Arabidopsis mimics a state of reduced ABA responses throughout plant development affecting growth processes such as germination, root growth, stomatal closure and water loss, flowering and senescence. The reduction in ABA responses is not due to reduced ABA levels but due to suppression of expression of several transcription factors mediating ABA responses. Transcript levels of negative regulators of germination (ABI3, ABI5, PIL5, RGL2 and RGL3) are reduced post-imbibition while those responsible for GA biosynthesis are up-regulated in transgenic MaSIN3 over-expressers. ABA-associated transcription factors are also down-regulated in response to ABA treatment. The HDAC inhibitors, SAHA and sodium butyrate, in combination with ABA differentially suppress germination in control and transgenic lines suggesting the recruitment by MaSIN3 of HDACs involved in suppression of ABA responses in different processes. The studies provide an insight into the ability of MaSIN3 to specifically affect a subset of developmental processes governed largely by ABA.
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Affiliation(s)
- Raj Luxmi
- Plant Gene Expression Lab, CSIR-National Botanical Research Institute (CSIR-NBRI), Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Rafi Marg, New Delhi 110001, India
| | - Rashmi Garg
- Plant Gene Expression Lab, CSIR-National Botanical Research Institute (CSIR-NBRI), Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Rafi Marg, New Delhi 110001, India
| | - Sudhakar Srivastava
- Plant Gene Expression Lab, CSIR-National Botanical Research Institute (CSIR-NBRI), Lucknow 226001, India; French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Sede Boqer Campus, Ben-Gurion University, Beer Sheva 84105, Israel
| | - Aniruddha P Sane
- Plant Gene Expression Lab, CSIR-National Botanical Research Institute (CSIR-NBRI), Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Rafi Marg, New Delhi 110001, India.
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98
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Geilen K, Heilmann M, Hillmer S, Böhmer M. WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep 2017; 7:14235. [PMID: 29079824 DOI: 10.1038/s41598-017-14695-14690] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 10/16/2017] [Indexed: 05/24/2023] Open
Abstract
Seed germination and postgerminative growth of Arabidopsis thaliana and various other plant species are arrested in response to unfavourable environmental conditions by signalling events involving the phytohormone abscisic acid (ABA). In this study, we showed that loss of the seed-specific WRKY DNA-BINDING PROTEIN 43 (WRKY43) conferred increased tolerance towards high salt, high osmolarity and low temperature during seed germination in Arabidopsis. The wrky43 loss of function lines displayed increased inhibition of seed germination in response to exogenous ABA; whereas lines overexpressing WRKY43 were more tolerant towards exogenous ABA. Biochemical analysis of fatty acid composition revealed that loss of WRKY43 increased polyunsaturated fatty acid content in seeds, particularly 18:2Δ9,12 and 18:3Δ9,12,15 in triacylglycerols and phospholipids, indicating an important physiological effect on fatty acid desaturation with ramifications for the tolerance of plants to cold and osmotic stress and possibly, for oilseed engineering. Molecular analyses showed that ABA-induced regulation of FUSCA3, ZAT10 and seed storage proteins were absent in the wrky43 mutant. In summary, WRKY43 encodes for a novel positive regulator of ABA-dependent gene regulation and as a potent modulator of fatty acid desaturation and seed filling, which results in increased tolerance to abiotic stress.
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Affiliation(s)
- Katja Geilen
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, Schlossplatz 7, Münster, Germany
| | - Mareike Heilmann
- Institute of Biochemistry/Biotechnology, Martin-Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3, D-06120, Halle, Germany
| | - Stefan Hillmer
- Electron Microscopy Core Facility, University of Heidelberg, Im Neuenheimer Feld 345, 69120, Heidelberg, Germany
| | - Maik Böhmer
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, Schlossplatz 7, Münster, Germany.
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99
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WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep 2017; 7:14235. [PMID: 29079824 PMCID: PMC5660175 DOI: 10.1038/s41598-017-14695-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 10/16/2017] [Indexed: 11/13/2022] Open
Abstract
Seed germination and postgerminative growth of Arabidopsis thaliana and various other plant species are arrested in response to unfavourable environmental conditions by signalling events involving the phytohormone abscisic acid (ABA). In this study, we showed that loss of the seed-specific WRKY DNA-BINDING PROTEIN 43 (WRKY43) conferred increased tolerance towards high salt, high osmolarity and low temperature during seed germination in Arabidopsis. The wrky43 loss of function lines displayed increased inhibition of seed germination in response to exogenous ABA; whereas lines overexpressing WRKY43 were more tolerant towards exogenous ABA. Biochemical analysis of fatty acid composition revealed that loss of WRKY43 increased polyunsaturated fatty acid content in seeds, particularly 18:2Δ9,12 and 18:3Δ9,12,15 in triacylglycerols and phospholipids, indicating an important physiological effect on fatty acid desaturation with ramifications for the tolerance of plants to cold and osmotic stress and possibly, for oilseed engineering. Molecular analyses showed that ABA-induced regulation of FUSCA3, ZAT10 and seed storage proteins were absent in the wrky43 mutant. In summary, WRKY43 encodes for a novel positive regulator of ABA-dependent gene regulation and as a potent modulator of fatty acid desaturation and seed filling, which results in increased tolerance to abiotic stress.
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100
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Cechová M, Válková M, Hradilová I, Janská A, Soukup A, Smýkal P, Bednář P. Towards Better Understanding of Pea Seed Dormancy Using Laser Desorption/Ionization Mass Spectrometry. Int J Mol Sci 2017; 18:E2196. [PMID: 29065445 PMCID: PMC5666877 DOI: 10.3390/ijms18102196] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 10/11/2017] [Accepted: 10/16/2017] [Indexed: 02/07/2023] Open
Abstract
Seed coats of six pea genotypes contrasting in dormancy were studied by laser desorption/ionization mass spectrometry (LDI-MS). Multivariate statistical analysis discriminated dormant and non-dormant seeds in mature dry state. Separation between dormant and non-dormant types was observed despite important markers of particular dormant genotypes differ from each other. Normalized signals of long-chain hydroxylated fatty acids (HLFA) in dormant JI64 genotype seed coats were significantly higher than in other genotypes. These compounds seem to be important markers likely influencing JI64 seed imbibition and germination. HLFA importance was supported by study of recombinant inbred lines (JI64xJI92) contrasting in dormancy but similar in other seed properties. Furthemore HLFA distribution in seed coat was studied by mass spectrometry imaging. HLFA contents in strophiole and hilum are significantly lower compared to other parts indicating their role in water uptake. Results from LDI-MS experiments are useful in understanding (physical) dormancy (first phases of germination) mechanism and properties related to food processing technologies (e.g., seed treatment by cooking).
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Affiliation(s)
- Monika Cechová
- Regional Centre of Advanced Technologies and Materials, Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 771 46 Olomouc, Czech Republic.
| | - Markéta Válková
- Regional Centre of Advanced Technologies and Materials, Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 771 46 Olomouc, Czech Republic.
| | - Iveta Hradilová
- Department of Botany, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic.
| | - Anna Janská
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic.
| | - Aleš Soukup
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná 5, 128 44 Prague, Czech Republic.
| | - Petr Smýkal
- Department of Botany, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic.
| | - Petr Bednář
- Regional Centre of Advanced Technologies and Materials, Department of Analytical Chemistry, Faculty of Science, Palacký University, 17. Listopadu 12, 771 46 Olomouc, Czech Republic.
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