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Azad A, Iradukunda JC, Men Y, Verdi A, Liu H. Persulfate photolysis and limited irrigation of recycled wastewater for turfgrass growth: Accumulation of pharmaceutical and personal care products and physiological responses. WATER RESEARCH 2024; 262:122009. [PMID: 39024669 DOI: 10.1016/j.watres.2024.122009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 05/23/2024] [Accepted: 06/26/2024] [Indexed: 07/20/2024]
Abstract
Recycled wastewater effluent irrigation and implementing limited irrigation rates are two promising strategies for water conservation in agriculture. However, one major challenge is the accumulation and translocation of Pharmaceutical and Personal Care Products (PPCPs) from recycled water to crops. This study investigated the effects of UV persulfate (UV/PS) treatment of recycled water and limited irrigation rate on PPCPs accumulation and physiological responses of St. Augustine turfgrass via a 14-week field trial. Carbamazepine (CBZ), sulfamethoxazole (SMX), triclosan (TCS), fluoxetine (FLX) and diclofenac (DCF) were spiked at 0.1-1.5 µg/L into recycled water and two limited irrigation rates corresponding to 60 % and 80 % of reference Evapotranspiration (ETo) were applied. Results showed that UV/PS removed 60 % of CBZ and > 99 % of other PPCPs from recycled water. Irrigation with UV/PS treated recycled water resulted in approximately a 60 % reduction in CBZ accumulation and complete removal of SMX, DCF, FLX and TCS in both turfgrass leaves and roots. A more limited irrigation rate at 60 % ETo resulted in a higher accumulation of CBZ accumulation compared to 80 % ETo. Similarly, the canopy temperature increased under 60 % ETo irrigation rate compared to 80 % ETo, suggesting that turfgrass under 60 % ETo was more prone to water stress. Applying a 60 % ETo irrigation rate was not sufficient to maintain the turfgrass quality in the acceptable range. A negative correlation between the visual quality and cumulative mass of PPCPs in turfgrass leaves at different irrigation rates was observed, yet irrigation rate was the major driver of turfgrass overall quality and health. Insights from this study will help to integrate recycled water with treatment and limited irrigation, thereby enhancing agricultural water reuse practices.
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Affiliation(s)
- Ananta Azad
- Department of Chemical and Environmental Engineering, University of California at Riverside, Riverside, CA 92521 USA
| | - Jean Claude Iradukunda
- Department of Environmental Sciences, University of California at Riverside, Riverside, CA 92521 USA
| | - Yujie Men
- Department of Chemical and Environmental Engineering, University of California at Riverside, Riverside, CA 92521 USA
| | - Amir Verdi
- Department of Environmental Sciences, University of California at Riverside, Riverside, CA 92521 USA.
| | - Haizhou Liu
- Department of Chemical and Environmental Engineering, University of California at Riverside, Riverside, CA 92521 USA.
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Protto V, Bauget F, Rishmawi L, Nacry P, Maurel C. Primary, seminal and lateral roots of maize show type-specific growth and hydraulic responses to water deficit. PLANT PHYSIOLOGY 2024; 194:2564-2579. [PMID: 38217868 PMCID: PMC10980523 DOI: 10.1093/plphys/kiad675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 11/07/2023] [Accepted: 11/27/2023] [Indexed: 01/15/2024]
Abstract
The water uptake capacity of a root system is determined by its architecture and hydraulic properties, which together shape the root hydraulic architecture. Here, we investigated root responses to water deficit (WD) in seedlings of a maize (Zea mays) hybrid line (B73H) grown in hydroponic conditions, taking into account the primary root (PR), the seminal roots (SR), and their respective lateral roots. WD was induced by various polyethylene glycol concentrations and resulted in dose-dependent inhibitions of axial and lateral root growth, lateral root formation, and hydraulic conductivity (Lpr), with slightly distinct sensitivities to WD between PR and SR. Inhibition of Lpr by WD showed a half-time of 5 to 6 min and was fully (SR) or partially (PR) reversible within 40 min. In the two root types, WD resulted in reduced aquaporin expression and activity, as monitored by mRNA abundance of 13 plasma membrane intrinsic protein (ZmPIP) isoforms and inhibition of Lpr by sodium azide, respectively. An enhanced suberization/lignification of the epi- and exodermis was observed under WD in axial roots and in lateral roots of the PR but not in those of SR. Inverse modeling revealed a steep increase in axial conductance in root tips of PR and SR grown under WD that may be due to the decreased growth rate of axial roots in these conditions. Overall, our work reveals that these root types show quantitative differences in their anatomical, architectural, and hydraulic responses to WD, in terms of sensitivity, amplitude and reversibility. This distinct functionalization may contribute to integrative acclimation responses of whole root systems to soil WD.
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Affiliation(s)
- Virginia Protto
- Institute for Plant Sciences of Montpellier (IPSiM), Univ Montpellier, CNRS, INRAE, Institut Agro, 2 place Viala, 34060 Montpellier, France
| | - Fabrice Bauget
- Institute for Plant Sciences of Montpellier (IPSiM), Univ Montpellier, CNRS, INRAE, Institut Agro, 2 place Viala, 34060 Montpellier, France
| | - Louai Rishmawi
- Institute for Plant Sciences of Montpellier (IPSiM), Univ Montpellier, CNRS, INRAE, Institut Agro, 2 place Viala, 34060 Montpellier, France
| | - Philippe Nacry
- Institute for Plant Sciences of Montpellier (IPSiM), Univ Montpellier, CNRS, INRAE, Institut Agro, 2 place Viala, 34060 Montpellier, France
| | - Christophe Maurel
- Institute for Plant Sciences of Montpellier (IPSiM), Univ Montpellier, CNRS, INRAE, Institut Agro, 2 place Viala, 34060 Montpellier, France
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Dwiningsih Y, Thomas J, Kumar A, Gupta C, Gill N, Ruiz C, Alkahtani J, Baisakh N, Pereira A. QTLs and Candidate Loci Associated with Drought Tolerance Traits of Kaybonnet x ZHE733 Recombinant Inbred Lines Rice Population. Int J Mol Sci 2023; 24:15167. [PMID: 37894848 PMCID: PMC10606886 DOI: 10.3390/ijms242015167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 10/02/2023] [Accepted: 10/10/2023] [Indexed: 10/29/2023] Open
Abstract
Rice is the most important staple crop for the sustenance of the world's population, and drought is a major factor limiting rice production. Quantitative trait locus (QTL) analysis of drought-resistance-related traits was conducted on a recombinant inbred line (RIL) population derived from the self-fed progeny of a cross between the drought-resistant tropical japonica U.S. adapted cultivar Kaybonnet and the drought-sensitive indica cultivar ZHE733. K/Z RIL population of 198 lines was screened in the field at Fayetteville (AR) for three consecutive years under controlled drought stress (DS) and well-watered (WW) treatment during the reproductive stage. The effects of DS were quantified by measuring morphological traits, grain yield components, and root architectural traits. A QTL analysis using a set of 4133 single nucleotide polymorphism (SNP) markers and the QTL IciMapping identified 41 QTLs and 184 candidate genes for drought-related traits within the DR-QTL regions. RT-qPCR in parental lines was used to confirm the putative candidate genes. The comparison between the drought-resistant parent (Kaybonnet) and the drought-sensitive parent (ZHE733) under DS conditions revealed that the gene expression of 15 candidate DR genes with known annotations and two candidate DR genes with unknown annotations within the DR-QTL regions was up-regulated in the drought-resistant parent (Kaybonnet). The outcomes of this research provide essential information that can be utilized in developing drought-resistant rice cultivars that have higher productivity when DS conditions are prevalent.
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Affiliation(s)
- Yheni Dwiningsih
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; (Y.D.); (J.T.); (A.K.); (C.R.); (J.A.)
| | - Julie Thomas
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; (Y.D.); (J.T.); (A.K.); (C.R.); (J.A.)
| | - Anuj Kumar
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; (Y.D.); (J.T.); (A.K.); (C.R.); (J.A.)
| | - Chirag Gupta
- Waisman Center, University of Wisconsin-Madison, Madison, WI 53705, USA;
- Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Navdeep Gill
- Department of Biological Sciences, Nova Southeastern University, Fort Lauderdale, FL 33314, USA;
| | - Charles Ruiz
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; (Y.D.); (J.T.); (A.K.); (C.R.); (J.A.)
| | - Jawaher Alkahtani
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; (Y.D.); (J.T.); (A.K.); (C.R.); (J.A.)
| | - Niranjan Baisakh
- Department of School of Plant, Environmental and Soil Sciences, Louisiana State University, Baton Rouge, LA 70803, USA;
| | - Andy Pereira
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; (Y.D.); (J.T.); (A.K.); (C.R.); (J.A.)
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Shi R, Seiler C, Knoch D, Junker A, Altmann T. Integrated phenotyping of root and shoot growth dynamics in maize reveals specific interaction patterns in inbreds and hybrids and in response to drought. FRONTIERS IN PLANT SCIENCE 2023; 14:1233553. [PMID: 37719228 PMCID: PMC10502302 DOI: 10.3389/fpls.2023.1233553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 08/07/2023] [Indexed: 09/19/2023]
Abstract
In recent years, various automated methods for plant phenotyping addressing roots or shoots have been developed and corresponding platforms have been established to meet the diverse requirements of plant research and breeding. However, most platforms are only either able to phenotype shoots or roots of plants but not both simultaneously. This substantially limits the opportunities offered by a joint assessment of the growth and development dynamics of both organ systems, which are highly interdependent. In order to overcome these limitations, a root phenotyping installation was integrated into an existing automated non-invasive high-throughput shoot phenotyping platform. Thus, the amended platform is now capable of conducting high-throughput phenotyping at the whole-plant level, and it was used to assess the vegetative root and shoot growth dynamics of five maize inbred lines and four hybrids thereof, as well as the responses of five inbred lines to progressive drought stress. The results showed that hybrid vigour (heterosis) occurred simultaneously in roots and shoots and was detectable as early as 4 days after transplanting (4 DAT; i.e., 8 days after seed imbibition) for estimated plant height (EPH), total root length (TRL), and total root volume (TRV). On the other hand, growth dynamics responses to progressive drought were different in roots and shoots. While TRV was significantly reduced 10 days after the onset of the water deficit treatment, the estimated shoot biovolume was significantly reduced about 6 days later, and EPH showed a significant decrease even 2 days later (8 days later than TRV) compared with the control treatment. In contrast to TRV, TRL initially increased in the water deficit period and decreased much later (not earlier than 16 days after the start of the water deficit treatment) compared with the well-watered plants. This may indicate an initial response of the plants to water deficit by forming longer but thinner roots before growth was inhibited by the overall water deficit. The magnitude and the dynamics of the responses were genotype-dependent, as well as under the influence of the water consumption, which was related to plant size.
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Affiliation(s)
- Rongli Shi
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Christiane Seiler
- Federal Research Centre for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Julius Kühn Institute (JKI), Quedlinburg, Germany
| | - Dominic Knoch
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Astrid Junker
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Thomas Altmann
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
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De novo transcriptome assembly from the nodal root growth zone of hydrated and water-deficit stressed maize inbred line FR697. Sci Rep 2023; 13:1960. [PMID: 36737660 PMCID: PMC9898524 DOI: 10.1038/s41598-023-29115-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 01/31/2023] [Indexed: 02/05/2023] Open
Abstract
Certain cultivars of maize show increased tolerance to water deficit conditions by maintenance of root growth. To better understand the molecular mechanisms related to this adaptation, nodal root growth zone samples were collected from the reference inbred line B73 and inbred line FR697, which exhibits a relatively greater ability to maintain root elongation under water deficits. Plants were grown under various water stress levels in both field and controlled environment settings. FR697-specific RNA-Seq datasets were generated and used for a de novo transcriptome assembly to characterize any genotype-specific genetic features. The assembly was aided by an Iso-Seq library of transcripts generated from various FR697 plant tissue samples. The Necklace pipeline was used to combine a Trinity de novo assembly along with a reference guided assembly and the Viridiplantae proteome to generate an annotated consensus "SuperTranscriptome" assembly of 47,915 transcripts with a N50 of 3152 bp in length. The results were compared by Blastn to maize reference genes, a Benchmarking Universal Single-Copy Orthologs (BUSCO) genome completeness report and compared with three maize reference genomes. The resultant 'SuperTranscriptome' was demonstrated to be of high-quality and will serve as an important reference for analysis of the maize nodal root transcriptomic response to environmental perturbations.
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Kang J, Sen S, Oliver MJ, Sharp RE. Comparative Transcriptomics Reveal Metabolic Rather than Genetic Control of Divergent Antioxidant Metabolism in the Primary Root Elongation Zone of Water-Stressed Cotton and Maize. Antioxidants (Basel) 2023; 12:antiox12020287. [PMID: 36829845 PMCID: PMC9952253 DOI: 10.3390/antiox12020287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/11/2023] [Accepted: 01/24/2023] [Indexed: 01/31/2023] Open
Abstract
Under water stress, the primary root elongation zones of cotton and maize exhibit both conserved and divergent metabolic responses, including variations in sulfur and antioxidant metabolism. To explore the relative importance of metabolic and genetic controls of these responses for each species, and the extent to which responses are mediated by similar gene expression networks within the framework of ortholog groups, comparative transcriptomics analyses were conducted under conditions of equivalent tissue water stress. Ortholog analysis revealed that 86% of the transcriptome response to water stress was phylogenetically unrelated between cotton and maize. Elevated transcript abundances for genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as key enzymes that enable osmotic adjustment, were conserved between the species. In contrast, antioxidant responses, at least with regard to glutathione metabolism and anti-oxidative enzymes, did not exhibit such a transcript abundance adaptive signature. In particular, previously characterized differential responses of the glutathione and sulfur metabolic pathways between cotton and maize were not evident in the transcriptomic responses. The findings indicate that the antioxidant response in both species results from a metabolic acclimation to water stress, and thus represents an example of water stress-related metabolic plasticity.
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Affiliation(s)
- Jian Kang
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | - Sidharth Sen
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- MU Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA
| | - Melvin J. Oliver
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | - Robert E. Sharp
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- Correspondence: ; Tel.: +1-573-882-1841
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Wang C, Li S, Wu M, Zhang W, He H, Yang D, Huang S, Guo Z, Xing X. Water use efficiency control for a maize field under mulched drip irrigation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159457. [PMID: 36252664 DOI: 10.1016/j.scitotenv.2022.159457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 09/26/2022] [Accepted: 10/11/2022] [Indexed: 06/16/2023]
Abstract
Agricultural ecosystem water use efficiency (WUE) is an important indicator reflecting carbon-water coupling, but its control mechanisms in managed fields remain unclear. In order to reveal the influencing factors of WUE in the agricultural field under mulched drip irrigation (DM), we carried out the 8-year continuous observations in a maize field from Northwestern China. The structural equation model, relative importance analysis and principal component analysis were used to quantify the regulation effects of environmental and biological factors on WUE at different time scales, in different growth stages and under different hydrothermal conditions. The results showed that annual WUE varied between 2.18 g C Kg-1 H2O and 3.60 g C Kg-1 H2O, with a multi-year mean of 2.91 g C Kg-1 H2O. The total effects of air temperature on the daily WUE in the whole growth period, the vegetative growth stage, the warm and dry years, the cold and wet years, and the warm and wet years were the largest, with values of 0.61, 0.80, 0.70, 0.70 and 0.91 respectively. However, vapor pressure deficit and net radiation had the largest total effect in the cold and dry years (-0.63) and the reproductive growth stage (-0.49), respectively. Leaf biomass played a leading role in regulating the daily and interannual WUE, and the relative importance of leaf biomass to WUE in the vegetative growth stage was up to 75 %. In the warm and wet years, the relative importance of root biomass to WUE was 33 %, slightly higher than that of leaf biomass (31 %). At the same time, we found that Ta has the potential to increase WUE under future climate warming. Our results improve the understanding of carbon-water coupling mechanisms and provide important enlightenment on how crop ecosystems should adapt to future climate change.
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Affiliation(s)
- Chunyu Wang
- Center for Agricultural Water Research in China, China Agricultural University, Beijing 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei 733009, China
| | - Sien Li
- Center for Agricultural Water Research in China, China Agricultural University, Beijing 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei 733009, China.
| | - Mousong Wu
- International Institute for Earth System Science, Nanjing University, Nanjing 210023, China.
| | - Wenxin Zhang
- Department of Physical Geography and Ecosystem Science, Lund University, Lund SE-22362, Sweden
| | - Hongxing He
- Department of Geography, McGill University, Burnside Hall, 805 Sherbrooke Street West, Montreal, Quebec H3A OB9, Canada
| | - Danni Yang
- Center for Agricultural Water Research in China, China Agricultural University, Beijing 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei 733009, China
| | - Siyu Huang
- Center for Agricultural Water Research in China, China Agricultural University, Beijing 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei 733009, China
| | - Zhenyu Guo
- Center for Agricultural Water Research in China, China Agricultural University, Beijing 100083, China; National Field Scientific Observation and Research Station on Efficient Water Use of Oasis Agriculture in Wuwei of Gansu Province, Wuwei 733009, China
| | - Xiuli Xing
- International Institute for Earth System Science, Nanjing University, Nanjing 210023, China
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Barnhart MH, Masalia RR, Mosley LJ, Burke JM. Phenotypic and transcriptomic responses of cultivated sunflower seedlings (Helianthus annuus L.) to four abiotic stresses. PLoS One 2022; 17:e0275462. [PMID: 36178944 PMCID: PMC9524668 DOI: 10.1371/journal.pone.0275462] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 09/18/2022] [Indexed: 11/19/2022] Open
Abstract
Plants encounter and respond to numerous abiotic stresses during their lifetimes. These stresses are often related and could therefore elicit related responses. There are, however, relatively few detailed comparisons between multiple different stresses at the molecular level. Here, we investigated the phenotypic and transcriptomic response of cultivated sunflower (Helianthus annuus L.) seedlings to three water-related stresses (i.e., dry-down, an osmotic challenge, and salt stress), as well as a generalized low-nutrient stress. All four stresses negatively impacted seedling growth, with the nutrient stress having a more divergent response from control as compared to the water-related stresses. Phenotypic responses were consistent with expectations for growth in low-resource environments, including increased (i.e., less negative) carbon fractionation values and leaf C:N ratios, as well as increased belowground biomass allocation. The number of differentially expressed genes (DEGs) under stress was greater in leaf tissue, but roots exhibited a higher proportion of DEGs unique to individual stresses. Overall, the three water-related stresses had a more similar transcriptomic response to each other vs. nutrient stress, though this pattern was more pronounced in root vs. leaf tissue. In contrast to our DEG analyses, co-expression network analysis revealed that there was little indication of a shared response between the four stresses in despite the majority of DEGs being shared between multiple stresses. Importantly, osmotic stress, which is often used to simulate drought stress in experimental settings, had little transcriptomic resemblance to true water limitation (i.e., dry-down) in our study, calling into question its utility as a means for simulating drought.
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Affiliation(s)
- Max H. Barnhart
- Department of Plant Biology, University of Georgia, Athens, GA, United States of America
- * E-mail:
| | - Rishi R. Masalia
- Department of Plant Biology, University of Georgia, Athens, GA, United States of America
| | - Liana J. Mosley
- Department of Plant Biology, University of Georgia, Athens, GA, United States of America
| | - John M. Burke
- Department of Plant Biology, University of Georgia, Athens, GA, United States of America
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Crop Root Responses to Drought Stress: Molecular Mechanisms, Nutrient Regulations, and Interactions with Microorganisms in the Rhizosphere. Int J Mol Sci 2022; 23:ijms23169310. [PMID: 36012575 PMCID: PMC9409098 DOI: 10.3390/ijms23169310] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 08/03/2022] [Accepted: 08/17/2022] [Indexed: 12/03/2022] Open
Abstract
Roots play important roles in determining crop development under drought. Under such conditions, the molecular mechanisms underlying key responses and interactions with the rhizosphere in crop roots remain limited compared with model species such as Arabidopsis. This article reviews the molecular mechanisms of the morphological, physiological, and metabolic responses to drought stress in typical crop roots, along with the regulation of soil nutrients and microorganisms to these responses. Firstly, we summarize how root growth and architecture are regulated by essential genes and metabolic processes under water-deficit conditions. Secondly, the functions of the fundamental plant hormone, abscisic acid, on regulating crop root growth under drought are highlighted. Moreover, we discuss how the responses of crop roots to altered water status are impacted by nutrients, and vice versa. Finally, this article explores current knowledge of the feedback between plant and soil microbial responses to drought and the manipulation of rhizosphere microbes for improving the resilience of crop production to water stress. Through these insights, we conclude that to gain a more comprehensive understanding of drought adaption mechanisms in crop roots, future studies should have a network view, linking key responses of roots with environmental factors.
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Kang J, Voothuluru P, Hoyos-Miernyk E, Alexander D, Oliver MJ, Sharp RE. Antioxidant Metabolism Underlies Different Metabolic Strategies for Primary Root Growth Maintenance under Water Stress in Cotton and Maize. Antioxidants (Basel) 2022; 11:antiox11050820. [PMID: 35624684 PMCID: PMC9137980 DOI: 10.3390/antiox11050820] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Revised: 04/16/2022] [Accepted: 04/19/2022] [Indexed: 01/24/2023] Open
Abstract
The divergence of metabolic responses to water stress in the elongation zone of cotton and maize primary roots was investigated by establishing water-deficit conditions that generated steady root elongation at equivalent tissue water potentials. In water-stressed cotton roots, cell elongation was maintained in the apical 3 mm but was progressively inhibited with further displacement from the apex. These responses are similar to previous findings in maize, providing the foundation for comparisons of metabolic responses in regions of growth maintenance and inhibition between the species. Metabolomics analyses showed region-specific and species-specific changes in metabolite abundance in response to water stress, revealing both conserved responses including osmolyte accumulation, and key differences in antioxidative and sulfur metabolism. Quantitative assessment showed contrasting glutathione responses in the root elongation zone between the species, with glutathione levels declining in cotton as stress duration progressed, whereas in maize, glutathione levels remained elevated. Despite the lesser glutathione response in cotton, hydrogen peroxide levels were low in water-stressed cotton compared with maize roots and were associated with higher catalase, ascorbate peroxidase, and superoxide dismutase activities in cotton. The results indicate alternative metabolic strategies underlying the responses of primary root growth to water stress between cotton and maize.
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Affiliation(s)
- Jian Kang
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA; (J.K.); (E.H.-M.); (M.J.O.)
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | - Priyamvada Voothuluru
- Center for Renewable Carbon, University of Tennessee Institute of Agriculture, Knoxville, TN 37996, USA;
| | - Elizabeth Hoyos-Miernyk
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA; (J.K.); (E.H.-M.); (M.J.O.)
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | | | - Melvin J. Oliver
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA; (J.K.); (E.H.-M.); (M.J.O.)
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | - Robert E. Sharp
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA; (J.K.); (E.H.-M.); (M.J.O.)
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
- Correspondence: ; Tel.: +1-573-882-1841
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11
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Wang J, Sidharth S, Zeng S, Jiang Y, Chan YO, Lyu Z, McCubbin T, Mertz R, Sharp RE, Joshi T. Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit. PHYSIOLOGIA PLANTARUM 2022; 174:e13672. [PMID: 35297059 DOI: 10.1111/ppl.13672] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 03/03/2022] [Accepted: 03/11/2022] [Indexed: 06/14/2023]
Abstract
Advances in next-generation sequencing and other high-throughput technologies have facilitated multiomics research, such as genomics, epigenomics, transcriptomics, proteomics, metabolomics, and phenomics. The resultant emerging multiomics data have brought new challenges as well as opportunities, as seen in the plant and agriculture science domains. We reviewed several bioinformatic and computational methods, models, and platforms, and we have highlighted some of our in-house developed efforts aimed at multiomics data analysis, integration, and management issues faced by the research community. A case study using multiomics datasets generated from our studies of maize nodal root growth under water deficit stress demonstrates the power of these datasets and some other publicly available tools. This analysis also sheds light on the landscape of such applied bioinformatic tools currently available for plant and crop science studies and introduces emerging trends and how they may affect the future.
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Affiliation(s)
- Juexin Wang
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
- Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri, USA
| | - Sen Sidharth
- Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri, USA
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri, USA
| | - Shuai Zeng
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
| | - Yuexu Jiang
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
- Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri, USA
| | - Yen On Chan
- MU Institute for Data Science and Informatics, University of Missouri, Columbia, Missouri, USA
| | - Zhen Lyu
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
| | - Tyler McCubbin
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri, USA
| | - Rachel Mertz
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri, USA
- Division of Biological Sciences, University of Missouri, Columbia, Missouri, USA
| | - Robert E Sharp
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri, USA
| | - Trupti Joshi
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
- Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri, USA
- Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri, USA
- MU Institute for Data Science and Informatics, University of Missouri, Columbia, Missouri, USA
- Department of Health Management and Informatics, University of Missouri, Columbia, Missouri, USA
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12
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Zhang Q, Yuan W, Wang Q, Cao Y, Xu F, Dodd IC, Xu W. ABA regulation of root growth during soil drying and recovery can involve auxin response. PLANT, CELL & ENVIRONMENT 2022; 45:871-883. [PMID: 34176142 DOI: 10.1111/pce.14137] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 06/19/2021] [Accepted: 06/19/2021] [Indexed: 06/13/2023]
Abstract
Abscisic acid (ABA) plays an important role in plant adaptation to water deficits, but its role in regulating root growth (primary root elongation and lateral root number) during different drought-phases remains unclear. Here, we exposed wild-type (WT) and ABA-deficient (not) tomato plants to three continuous drought-phases (moderate drying: day 0-21; severe drying: day 22-47 and re-watering: day 48-51). It was found that WT increased primary root growth during moderate drying; maintained more lateral roots, and greater primary root and total root length under severe drying; and produced more roots after re-watering. After RNA-Seq analysis, we found that the auxin-related genes in root showed different expression patterns between WT and not under drying or re-watering. Further, exogenous supply of IAA partially recovered the root growth of ABA-deficient not plants under three continuous drought-phases. Our results suggested that ABA regulation of tomato root growth during soil drying and recovery can involve auxin response.
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Affiliation(s)
- Qian Zhang
- Fujian Provincial Key Laboratory of Plant Functional Biology and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop and College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Wei Yuan
- Fujian Provincial Key Laboratory of Plant Functional Biology and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop and College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Qianwen Wang
- Fujian Provincial Key Laboratory of Plant Functional Biology and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop and College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Yiying Cao
- Fujian Provincial Key Laboratory of Plant Functional Biology and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop and College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Feiyun Xu
- Fujian Provincial Key Laboratory of Plant Functional Biology and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop and College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
- College of Agriculture, Yangzhou University, Yangzhou, China
| | - Ian C Dodd
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Weifeng Xu
- Fujian Provincial Key Laboratory of Plant Functional Biology and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop and College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
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13
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Iqbal N, Manalil S, Chauhan BS, Adkins S. Effect of Different Climate Change Variables on the Ecology and Management of Sesbania cannabina through Glyphosate. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10050910. [PMID: 34062859 PMCID: PMC8147314 DOI: 10.3390/plants10050910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 04/25/2021] [Accepted: 04/30/2021] [Indexed: 06/12/2023]
Abstract
An elevated atmospheric carbon dioxide (CO2) concentration and frequent droughts are two anticipated climate change scenarios in which certain invasive weeds may develop competitive advantages over crops and adversely impact productivity and herbicide efficacy. Hence, a study was conducted to explore the effect of different climatic scenarios on the growth and management of Sesbania cannabina (Retz.) Pers with glyphosate. The variables investigated were two CO2 concentrations (400 and 700 ppm), two soil moisture levels (100% and 50% of field capacity (FC)), and three glyphosate rates (0 (control), 517 (50% of recommended rate), and 1034 g ae ha-1 (recommended rate)). CO2 concentrations and soil moisture levels had different effects on the growth and management of S. cannabina. Overall, 100% FC and elevated [CO2] of 700 ppm recorded the maximum plant height (38 cm), leaves per plant (20), growth index (60), chlorophyll content (SPAD value 37), and dry biomass (3 g) in comparison with ambient [CO2] of 400 ppm and 50% FC treatment. The recommended glyphosate application gave 100% weed biomass reduction; however, efficacy was reduced (63%) when applied at 50% of the recommended rate under elevated [CO2] of 700 ppm and 50% FC conditions.
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Affiliation(s)
- Nadeem Iqbal
- School of Agriculture and Food Sciences, The University of Queensland, Gatton, QLD 4343, Australia; (B.S.C.); (S.A.)
| | - Sudheesh Manalil
- The Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Gatton, QLD 4343, Australia;
- School of Agriculture and Environment, Institute of Agriculture, The University of Western Australia, Crawley, Perth, WA 6009, Australia
- Amrita School of Agricultural Sciences, Amrita Vishwa Vidyapeetham, Coimbatore 641112, India
| | - Bhagirath Singh Chauhan
- School of Agriculture and Food Sciences, The University of Queensland, Gatton, QLD 4343, Australia; (B.S.C.); (S.A.)
- The Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Gatton, QLD 4343, Australia;
| | - Steve Adkins
- School of Agriculture and Food Sciences, The University of Queensland, Gatton, QLD 4343, Australia; (B.S.C.); (S.A.)
- The Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Gatton, QLD 4343, Australia;
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14
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Foxx AJ, Kramer AT. Hidden variation: cultivars and wild plants differ in trait variation with surprising root trait outcomes. Restor Ecol 2021. [DOI: 10.1111/rec.13336] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alicia J. Foxx
- United States Department of Agriculture; Agricultural Research Services Genomics and Bioinformatic Research Unit, Gainesville, FL, 32608, U.S.A
- Negaunee Institute for Plant Conservation Science and Action The Chicago Botanic Garden, Glencoe, IL, 60022, U.S.A
- Plant Biology and Conservation Program Northwestern University, Evanston, IL 60208, U.S.A
| | - Andrea T. Kramer
- Negaunee Institute for Plant Conservation Science and Action The Chicago Botanic Garden, Glencoe, IL, 60022, U.S.A
- Plant Biology and Conservation Program Northwestern University, Evanston, IL 60208, U.S.A
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15
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Lucob-Agustin N, Kawai T, Kano-Nakata M, Suralta RR, Niones JM, Hasegawa T, Inari-Ikeda M, Yamauchi A, Inukai Y. Morpho-physiological and molecular mechanisms of phenotypic root plasticity for rice adaptation to water stress conditions. BREEDING SCIENCE 2021; 71:20-29. [PMID: 33762873 PMCID: PMC7973496 DOI: 10.1270/jsbbs.20106] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 11/04/2020] [Indexed: 05/23/2023]
Abstract
Different types of water stress severely affect crop production, and the plant root system plays a critical role in stress avoidance. In the case of rice, a cereal crop cultivated under the widest range of soil hydrologic conditions, from irrigated anaerobic conditions to rainfed conditions, phenotypic root plasticity is of particular relevance. Recently, important plastic root traits under different water stress conditions, and their physiological and molecular mechanisms have been gradually understood. In this review, we summarize these plastic root traits and their contributions to dry matter production through enhancement of water uptake under different water stress conditions. We also discuss the physiological and molecular mechanisms regulating the phenotypic plasticity of root systems.
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Affiliation(s)
- Nonawin Lucob-Agustin
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8601, Japan
- Philippine Rice Research Institute, Central Experiment Station, Science City of Muñoz, Nueva Ecija, 3119, Philippines
| | - Tsubasa Kawai
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8601, Japan
| | - Mana Kano-Nakata
- International Center for Research and Education in Agriculture, Nagoya University, Nagoya, Aichi 464-8601, Japan
| | - Roel R. Suralta
- Philippine Rice Research Institute, Central Experiment Station, Science City of Muñoz, Nueva Ecija, 3119, Philippines
| | - Jonathan M. Niones
- Philippine Rice Research Institute, Central Experiment Station, Science City of Muñoz, Nueva Ecija, 3119, Philippines
| | - Tomomi Hasegawa
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8601, Japan
| | - Mayuko Inari-Ikeda
- International Center for Research and Education in Agriculture, Nagoya University, Nagoya, Aichi 464-8601, Japan
| | - Akira Yamauchi
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8601, Japan
| | - Yoshiaki Inukai
- International Center for Research and Education in Agriculture, Nagoya University, Nagoya, Aichi 464-8601, Japan
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16
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Brunel-Saldias N, Ferrio JP, Elazab A, Orellana M, del Pozo A. Root Architecture and Functional Traits of Spring Wheat Under Contrasting Water Regimes. FRONTIERS IN PLANT SCIENCE 2020; 11:581140. [PMID: 33262777 PMCID: PMC7686047 DOI: 10.3389/fpls.2020.581140] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 10/07/2020] [Indexed: 05/29/2023]
Abstract
Wheat roots are known to play an important role in the yield performance under water-limited (WL) conditions. Three consecutive year trials (2015, 2016, and 2017) were conducted in a glasshouse in 160 cm length tubes on a set of spring wheat (Triticum aestivum L.) genotypes under contrasting water regimes (1) to assess genotypic variability in root weight density (RWD) distribution in the soil profile, biomass partitioning, and total water used; and (2) to determine the oxygen and hydrogen isotopic signatures of plant and soil water in order to evaluate the contribution of shallow and deep soil water to plant water uptake and the evaporative enrichment of these isotopes in the leaf as a surrogate for plant transpiration. In the 2015 trial under well-watered (WW) conditions, the aerial biomass (AB) was not significantly different among 15 wheat genotypes, while the total root biomass and the RWD distribution in the soil profile were significantly different. In the 2016 and 2017 trials, a subset of five genotypes from the 2015 trial was grown under WW and WL regimes. The water deficit significantly reduced AB only in 2016. The water regimes did not significantly affect the root biomass and root biomass distribution in the soil depths for both the 2016 and 2017 trials. The study results highlighted that under a WL regime, the production of thinner roots with low biomass is more beneficial for increasing the water uptake than the production of large thick roots. The models applied to estimate the relative contribution of the plant's primary water sources (shallow or deep soil water) showed large interindividual variability in soil, and plant water isotopic composition resulted in large uncertainties in the model estimates. On the other side, the combined information of root architecture and the leaf stable isotope signatures could explain plant water status.
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Affiliation(s)
- Nidia Brunel-Saldias
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Talca, Chile
| | - Juan Pedro Ferrio
- Fundacion Agencia Aragonesa para la Investigacion y el Desarrollo (ARAID), Zaragoza, Spain
- Department of Forest Resources, Agrifood Research and Technology Center of Aragón (CITA), Zaragoza, Spain
- Department of Botany, Faculty of Natural Sciences and Oceanography, University of Concepción, Concepción, Chile
| | - Abdelhalim Elazab
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Talca, Chile
| | - Massiel Orellana
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Talca, Chile
| | - Alejandro del Pozo
- Centro de Mejoramiento Genético y Fenómica Vegetal, Facultad de Ciencias Agrarias, Universidad de Talca, Talca, Chile
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17
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Miao J, Li X, Li X, Tan W, You A, Wu S, Tao Y, Chen C, Wang J, Zhang D, Gong Z, Yi C, Yang Z, Gu M, Liang G, Zhou Y. OsPP2C09, a negative regulatory factor in abscisic acid signalling, plays an essential role in balancing plant growth and drought tolerance in rice. THE NEW PHYTOLOGIST 2020; 227:1417-1433. [PMID: 32433775 DOI: 10.1111/nph.16670] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 04/19/2020] [Indexed: 05/29/2023]
Abstract
Plants maintain a dynamic balance between plant growth and stress tolerance to optimise their fitness and ensure survival. Here, we investigated the roles of a clade A type 2C protein phosphatase (PP2C)-encoding gene, OsPP2C09, in regulating the trade-off between plant growth and drought tolerance in rice (Oryza sativa L.). The OsPP2C09 protein interacted with the core components of abscisic acid (ABA) signalling and showed PP2C phosphatase activity in vitro. OsPP2C09 positively affected plant growth but acted as a negative regulator of drought tolerance through ABA signalling. Transcript and protein levels of OsPP2C09 were rapidly induced by exogenous ABA treatments, which suppressed excessive ABA signalling and plant growth arrest. OsPP2C09 transcript levels in roots were much higher than those in shoots under normal conditions. After ABA, polyethylene glycol and dehydration treatments, the accumulation rate of OsPP2C09 transcripts in roots was more rapid and greater than that in shoots. This differential expression between the roots and shoots may increase the plant's root-to-shoot ratio under drought-stress conditions. This study sheds new light on the roles of OsPP2C09 in coordinating plant growth and drought tolerance. In particular, we propose that OsPP2C09-mediated ABA desensitisation contributes to root elongation under drought-stress conditions in rice.
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Affiliation(s)
- Jun Miao
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Xianfeng Li
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Xiangbo Li
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Wenchen Tan
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Aiqing You
- Institute of Food Crops, Hubei Academy of Agricultural Sciences, Wuhan, 430064, China
| | - Shujun Wu
- Crop Breeding and Cultivation Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China
| | - Yajun Tao
- Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Chen Chen
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Jun Wang
- Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Dongping Zhang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Zhiyun Gong
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Chuandeng Yi
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Zefeng Yang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Minghong Gu
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Guohua Liang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Yong Zhou
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou, 225009, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
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18
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Yobi A, Bagaza C, Batushansky A, Shrestha V, Emery ML, Holden S, Turner-Hissong S, Miller ND, Mawhinney TP, Angelovici R. The complex response of free and bound amino acids to water stress during the seed setting stage in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:838-855. [PMID: 31901179 DOI: 10.1111/tpj.14668] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Accepted: 12/20/2019] [Indexed: 06/10/2023]
Abstract
Free amino acids (FAAs) and protein-bound amino acids (PBAAs) in seeds play an important role in seed desiccation, longevity, and germination. However, the effect that water stress has on these two functional pools, especially when imposed during the crucial seed setting stage is unclear. To better understand these effects, we exposed Arabidopsis plants at the seed setting stage to a range of water limitation and water deprivation conditions and then evaluated physiological, metabolic, and proteomic parameters, with special focus on FAAs and PBAAs. We found that in response to severe water limitation, seed yield decreased, while seed weight, FAA, and PBAA content per seed increased. Nevertheless, the composition of FAAs and PBAAs remained unaltered. In response to severe water deprivation, however, both seed yield and weight were reduced. In addition, major alterations were observed in both FAA and proteome compositions, which indicated that both osmotic adjustment and proteomic reprogramming occurred in these naturally desiccation-tolerant organs. However, despite the major proteomic alteration, the PBAA composition did not change, suggesting that the proteomic reprogramming was followed by a proteomic rebalancing. Proteomic rebalancing has not been observed previously in response to stress, but its occurrence under stress strongly suggests its natural function. Together, our data show that the dry seed PBAA composition plays a key role in seed fitness and therefore is rigorously maintained even under severe water stress, while the FAA composition is more plastic and adaptable to changing environments, and that both functional pools are distinctly regulated.
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Affiliation(s)
- Abou Yobi
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Clement Bagaza
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Albert Batushansky
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Vivek Shrestha
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Marianne L Emery
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Samuel Holden
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Sarah Turner-Hissong
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
| | - Nathan D Miller
- Department of Botany, University of Wisconsin, Madison, WI, 53706, USA
| | - Thomas P Mawhinney
- Department of Biochemistry, University of Missouri, Columbia, MO, 65211, USA
| | - Ruthie Angelovici
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA
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19
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Ghosh A, Agrawal M, Agrawal SB. Effect of water deficit stress on an Indian wheat cultivar (Triticum aestivum L. HD 2967) under ambient and elevated level of ozone. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 714:136837. [PMID: 32018978 DOI: 10.1016/j.scitotenv.2020.136837] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 01/13/2020] [Accepted: 01/19/2020] [Indexed: 06/10/2023]
Abstract
The response of a wheat cultivar (HD 2967) under the combination of elevated ozone (O3) and water deficit stress (WS) was evaluated in terms of morphological, physiological and yield parameters along with nutrient uptake and their redistribution to different plant parts. An open-top chamber experiment has been conducted under O3 exposures (ambient (A) and ambient +20 ppb O3 (E)) along with two different water regimes (well-watered; WW and water deficit with 50% of soil capacity; WS). Most of the growth parameters showed significant reductions due to elevated O3 under both WW and WS conditions. Stomatal conductance and assimilation rate reduced significantly under the combined stress as compared to their controls (AWW). The maximum decrease in grain yield was observed under the additive effect of both the stresses of water deficit and elevated O3 (-43.6%), followed by water deficit stress (-19.8%) and elevated O3 (-17.9%) as compared to the control (AWW). Furthermore, the study displayed that reduced water availability has checked the uptake of nutrients in the roots, shoot and leaves, while, a higher carbon accumulation has been observed with subsequent increases in C: N and C: K ratios in the leaves. Such limitation of nutrients uptake and photosynthates availability weakened the antioxidative defense system of the test cultivar, making it more sensitive against combined stresses. Besides, the study displayed that the defense system has been remarkably suppressed under the presence of interactive stress factors, which allowed us to predict that the distribution of limited carbon pool has inverse relationship between the plant's defense system and growth.
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Affiliation(s)
- Annesha Ghosh
- Laboratory of Air Pollution and Global Climate Change, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Madhoolika Agrawal
- Laboratory of Air Pollution and Global Climate Change, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Shashi Bhushan Agrawal
- Laboratory of Air Pollution and Global Climate Change, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi 221005, India..
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20
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Foxx AJ, Fort F. Root and shoot competition lead to contrasting competitive outcomes under water stress: A systematic review and meta-analysis. PLoS One 2019; 14:e0220674. [PMID: 31825953 PMCID: PMC6905553 DOI: 10.1371/journal.pone.0220674] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 11/22/2019] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Competition is a critical process that shapes plant communities and interacts with environmental constraints. There are surprising knowledge gaps related to mechanisms that belie competitive processes, though important to natural communities and agricultural systems: the contribution of different plant parts on competitive outcomes and the effect of environmental constraints on these outcomes. OBJECTIVE Studies that partition competition into root-only and shoot-only interactions assess whether plant parts impose different competitive intensities using physical partitions and serve as an important way to fill knowledge gaps. Given predicted drought escalation due to climate change, we focused a systematic review-including a meta-analysis on the effects of water supply and competitive outcomes. METHODS We searched ISI Web of Science for peer-reviewed studies and found 2042 results. From which eleven suitable studies, five of which had extractable information of 80 effect sizes on 10 species to test these effects. We used a meta-analysis to compare the log response ratios (lnRR) on biomass for responses to competition between roots, shoots, and full plants at two water levels. RESULTS Water availability treatment and competition treatment (root-only, shoot-only, and full plant competition) significantly interacted to affect plant growth responses (p < 0.0001). Root-only and full plant competition are more intense in low water availability (-1.2 and -0.9 mean lnRR, respectively) conditions than shoot-only competition (-0.2 mean lnRR). However, shoot-only competition in high water availability was the most intense (- 0.78 mean lnRR) compared to root-only and full competition (-0.5 and 0.61 mean lnRR, respectively) showing the opposite pattern to low water availability. These results also show that the intensity of full competition is similar to root-only competition and that low water availability intensifies root competition while weakening shoot competition. CONCLUSIONS The outcome that competition is most intense between roots at low water availability emphasizes the importance of root competition and these patterns of competition may shift in a changing climate, creating further urgency for further studies to fil knowledge gaps addressing issues of drought on plant interactions and communities.
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Affiliation(s)
- Alicia J. Foxx
- Plant Biology and Conservation; Northwestern University, Evanston, Illinois, United States of America
- Plant Science and Conservation, The Chicago Botanic Garden, Glencoe, Illinois, United States of America
| | - Florian Fort
- CEFE, Montpellier SupAgro, Université de Montpellier, CNRS, EPHE, IRD, Université Paul Valéry, Montpellier, France
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21
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Seeve CM, Sunkar R, Zheng Y, Liu L, Liu Z, McMullen M, Nelson S, Sharp RE, Oliver MJ. Water-deficit responsive microRNAs in the primary root growth zone of maize. BMC PLANT BIOLOGY 2019; 19:447. [PMID: 31651253 PMCID: PMC6814125 DOI: 10.1186/s12870-019-2037-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/12/2019] [Indexed: 05/19/2023]
Abstract
BACKGROUND MicroRNA-mediated gene regulatory networks play a significant role in plant growth and development and environmental stress responses. RESULTS We identified 79 microRNAs (miRNAs) and multiple miRNA variants (isomiRs) belonging to 26 miRNA families in the primary root growth zone of maize seedlings grown at one of three water potentials: well-watered (- 0.02 MPa), mild water deficit stress (- 0.3 MPa), and severe water deficit stress (- 1.6 MPa). The abundances of 3 miRNAs (mild stress) and 34 miRNAs representing 17 families (severe stress) were significantly different in water-deficit stressed relative to well-watered controls (FDR < 0.05 and validated by stem loop RT-qPCR). Degradome sequencing revealed 213 miRNA-regulated transcripts and trancriptome profiling revealed that the abundance of 77 (miRNA-regulated) were regulated by water-defecit stress. miR399e,i,j-3p was strongly regulated by water-defcit stress implicating the possibility of nutrient deficiency during stress. CONCLUSIONS We have identified a number of maize miRNAs that respond to specific water deficits applied to the primary root growth zone. We have also identified transcripts that are targets for miRNA regulation in the root growth zone under water-deficit stress. The miR399e,i,j-3p that is known to regulate phosphate uptake in response to nutrient deficiencies responds to water-deficit stress, however, at the seedling stage the seed provides adequate nutrients for root growth thus miR399e,i,j-3p may play a separate role in water-deficit responses. A water-deficit regulated maize transcript, similar to known miR399 target mimics, was identified and we hypothesized that it is another regulatory player, moderating the role of miR399e,i,j-3p, in primary root growth zone water deficit responses.
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Affiliation(s)
- Candace M. Seeve
- USDA-ARS, Plant Genetics Research Unit, Columbia, MO 65211 USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211 USA
| | - Ramanjulu Sunkar
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078 USA
| | - Yun Zheng
- Yunnan Key Laboratory of Primate Biomedical Research, Kunming University of Science and Technology, Kunming, 650500 Yunnan China
| | - Li Liu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500 Yunnan China
| | - Zhijie Liu
- Huazhong Agricultural University, Wuhan, 430070 Hubei Province China
| | - Michael McMullen
- Division of Plant Sciences, Columbia, University of Missouri, Columbia, MO 65211 USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211 USA
| | - Sven Nelson
- USDA-ARS, Plant Genetics Research Unit, Columbia, MO 65211 USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211 USA
| | - Robert E. Sharp
- Division of Plant Sciences, Columbia, University of Missouri, Columbia, MO 65211 USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211 USA
| | - Melvin J. Oliver
- USDA-ARS, Plant Genetics Research Unit, Columbia, MO 65211 USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211 USA
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22
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Abstract
Roots provide the primary mechanism that plants use to absorb water and nutrients from their environment. These functions are dependent on developmental mechanisms that direct root growth and branching into regions of soil where these resources are relatively abundant. Water is the most limiting factor for plant growth, and its availability is determined by the weather, soil structure, and salinity. In this review, we define the developmental pathways that regulate the direction of growth and branching pattern of the root system, which together determine the expanse of soil from which a plant can access water. The ability of plants to regulate development in response to the spatial distribution of water is a focus of many recent studies and provides a model for understanding how biological systems utilize positional cues to affect signaling and morphogenesis. A better understanding of these processes will inform approaches to improve crop water use efficiency to more sustainably feed a growing population.
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Affiliation(s)
- José R. Dinneny
- Department of Biology, Stanford University, Stanford, California 94305, USA
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23
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Kübert A, Götz M, Kuester E, Piayda A, Werner C, Rothfuss Y, Dubbert M. Nitrogen Loading Enhances Stress Impact of Drought on a Semi-natural Temperate Grassland. FRONTIERS IN PLANT SCIENCE 2019; 10:1051. [PMID: 31543886 PMCID: PMC6730263 DOI: 10.3389/fpls.2019.01051] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 07/29/2019] [Indexed: 05/22/2023]
Abstract
Two important threats to the sustainable functioning of seminatural grasslands in temperate zones are (1) nutrient loading due to agricultural fertilization and pollution, and (2) the increase of extreme drought events due to climate change. These threats may cause substantial shifts in species diversity and abundance and considerably affect the carbon and water balance of ecosystems. The synergistic effects between those two threats, however, can be complex and are poorly understood. Here, we experimentally investigated the effects of nitrogen addition and extreme drought (separately and in combination) on a seminatural temperate grassland, located in Freiburg (South Germany). To study the grassland response, we combined eddy-covariance techniques with open gas exchange systems. Open gas exchange chambers were connected to an infrared gas analyzer and water isotope spectrometer, which allowed the partitioning of net ecosystem exchange and evapotranspiration. Vegetation parameters were described by species richness, species abundance, and leaf area index. Our results suggest that grassland communities, strongly weakened in their stress response by nitrogen loading, can substantially lose their carbon sink function during drought. While nitrogen addition caused a significant loss in forb species (-25%), precipitation reduction promoted a strong dominance of grass species at season start. Consequently, the grass-dominated and species-poor community suffered from a strong above-ground dieback during the dry summer months, likely caused by lower water use efficiency and weaker drought adaptations of the species community. Over the growing season (April-September), the carbon sequestration of the studied grassland was reduced by more than 60% as a consequence of nitrogen addition. Nitrogen addition in combination with precipitation reduction decreased carbon sequestration by 73%. Eutrophication can severely threaten the resilient functioning of grasslands, in particular when drought periods will increase as predicted by future climate scenarios. Our findings emphasize the importance of preserving high diversity of grasslands to strengthen their resistance against extreme events such as droughts.
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Affiliation(s)
- Angelika Kübert
- Ecosystem Physiology, Freiburg University, Freiburg, Germany
| | - Miriam Götz
- Ecosystem Physiology, Freiburg University, Freiburg, Germany
| | - Emma Kuester
- Ecosystem Physiology, Freiburg University, Freiburg, Germany
| | - Arndt Piayda
- Thünen Institute of Climate-Smart Agriculture, Braunschweig, Germany
| | | | - Youri Rothfuss
- Institute of Bio- and Geosciences, Agrosphere Institute (IBG-3), Forschungszentrum Jülich, Jülich, Germany
| | - Maren Dubbert
- Ecosystem Physiology, Freiburg University, Freiburg, Germany
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24
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Dowd TG, Braun DM, Sharp RE. Maize lateral root developmental plasticity induced by mild water stress. I: Genotypic variation across a high-resolution series of water potentials. PLANT, CELL & ENVIRONMENT 2019; 42:2259-2273. [PMID: 29981147 DOI: 10.1111/pce.13399] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 06/27/2018] [Accepted: 06/27/2018] [Indexed: 06/08/2023]
Abstract
Lateral root developmental plasticity induced by mild water stress was examined across a high-resolution series of growth media water potentials (Ψw ) in two genotypes of maize. The suitability of several media for imposing near-stable Ψw treatments on transpiring plants over prolonged growth periods was assessed. Genotypic differences specific to responses of lateral root growth from the primary root system occurred between cultivars FR697 and B73 over a narrow series of water stress treatments ranging in Ψw from -0.25 to -0.40 MPa. In FR697, both the average length and number of first-order lateral roots were substantially enhanced at a Ψw of -0.25 MPa compared with well-watered controls. These effects were separated spatially, occurring primarily in the upper and lower regions of the axial root, respectively. Furthermore, first-order lateral roots progressively increased in diameter with increasing water stress, resulting in a maximum 2.3-fold increase in root volume at a Ψw of -0.40 MPa. In B73, in contrast, the length, diameter, nor number of lateral roots was increased in any of the water stress treatments. The genotype-specific responses observed over this narrow range of Ψw demonstrate the necessity of high-resolution studies at mild stress levels for characterization of lateral root developmental plasticity.
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Affiliation(s)
- Tyler G Dowd
- Divisions of Plant Sciences, University of Missouri, Columbia, Missouri, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri
| | - David M Braun
- Biological Sciences, University of Missouri, Columbia, Missouri
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri
| | - Robert E Sharp
- Divisions of Plant Sciences, University of Missouri, Columbia, Missouri, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri
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25
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Wang X, Guo C, Peng J, Li C, Wan F, Zhang S, Zhou Y, Yan Y, Qi L, Sun K, Yang S, Gong Z, Li J. ABRE-BINDING FACTORS play a role in the feedback regulation of ABA signaling by mediating rapid ABA induction of ABA co-receptor genes. THE NEW PHYTOLOGIST 2019; 221:341-355. [PMID: 30019753 DOI: 10.1111/nph.15345] [Citation(s) in RCA: 108] [Impact Index Per Article: 21.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 06/14/2018] [Indexed: 05/22/2023]
Abstract
Group A protein phosphatase 2Cs (PP2Cs) are abscisic acid (ABA) co-receptors that negatively regulate the ABA signaling pathway by inhibiting the downstream SnRK2 protein kinases. It has long been observed that exogenous ABA treatments dramatically induce the expression of group A PP2C genes, but the underlying molecular mechanisms and the biological significance remain largely unknown. Here, by using GUS reporter transgenic lines in which various lengths of ABI1 and ABI2 promoters were used to drive GUS gene expression, we defined the promoter fragments that confer ABA inducibility to ABI1 and ABI2. We further showed that ABRE-binding factors (ABFs), the bZIP family transcription factors, directly bind to the promoters of group A PP2C genes, and mediate rapid induction of their expression on exogenous ABA treatments. Moreover, our data indicated that ABA dramatically induces the expression of ABF genes and the accumulation of endogenous ABF proteins, and that ABFs themselves are involved in this induction, thus providing another layer of ABA regulation towards ABF proteins in addition to the well-characterized ABA-induced phosphorylation by SnRK2 protein kinases. Together, our data demonstrate that ABFs mediate rapid ABA induction of group A PP2C genes, thus playing a role in the negative feedback regulation of ABA signaling.
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Affiliation(s)
- Xiaoji Wang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Can Guo
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Jing Peng
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Cong Li
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Fangfang Wan
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Shaoman Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Yangyang Zhou
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Yan Yan
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Lijuan Qi
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Kaiwen Sun
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Shuhua Yang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Zhizhong Gong
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Jigang Li
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
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26
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Yura H. Comparative ecophysiology of Larix kaempferi
(Lamb.) Carr. and Abies veitchii
Lindl. III. Analysis of factors determining the differences in root depth. Ecol Res 2018. [DOI: 10.1007/bf02348609] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Hiroshi Yura
- ; Department of Botany, Faculty of Science; University of Tokyo; Tokyo 113 Japan
- ; Natural History Museum and Institute; Chiba, Aoba-cho 955-2, Chuou-ku Chiba 260 Japan
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27
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Suitability of Different Agricultural and Urban Organic Wastes as Feedstocks for the Production of Biochar—Part 2: Agronomical Evaluation as Soil Amendment. SUSTAINABILITY 2018. [DOI: 10.3390/su10062077] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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28
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Turner NC. Turgor maintenance by osmotic adjustment: 40 years of progress. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3223-3233. [PMID: 29767758 DOI: 10.1093/jxb/ery181] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Accepted: 05/11/2018] [Indexed: 05/23/2023]
Abstract
Osmotic adjustment (OA), the accumulation of solutes in higher plant cells in response to water deficits, was first reported more than four decades ago. Since then, variation in OA among genotypes/cultivars in response to drought has been reported in many crop plants, but its role in maintaining growth and yield in water-limited environments has been questioned. The role of OA in the physiological and agronomic adaptation to water stress of crops, the methods of reliably measuring the degree of OA among genotypes or species, the range of OA in many studies, and its impact on grain yield in water-limited environments are reviewed. The genetics of OA has received limited study, and the breeding and selection for high OA has only resulted in the release of one commercial cultivar of wheat as far as is known. The reasons for the limited interest in breeding for the OA trait are discussed.
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Affiliation(s)
- Neil C Turner
- UWA Institute of Agriculture and UWA School of Agriculture and Environment, The University of Western Australia, Locked Bag, Perth, WA, Australia
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29
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Biju S, Fuentes S, Gupta D. The use of infrared thermal imaging as a non-destructive screening tool for identifying drought-tolerant lentil genotypes. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 127:11-24. [PMID: 29544209 DOI: 10.1016/j.plaphy.2018.03.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Revised: 03/01/2018] [Accepted: 03/05/2018] [Indexed: 06/08/2023]
Abstract
Lentil (Lens culinaris, Medik.) is an important legume crop, which often experience drought stress especially at the flowering and grain filling phenological stages. The availability of efficient and robust screening tools based on relevant non-destructive quantifiable traits would facilitate research on crop improvement for drought tolerance. The objective of this study was to evaluate the drought tolerance of 37 lentil genotypes using infrared thermal imaging (IRTI), drought tolerance parameters and multivariate data analysis. Potted plants were kept in a completely randomized design in a growth chamber with five replicates. Plants were subjected to three different drought treatments: 100, 50 and 20% of field capacity at the onset of reproductive period. The relative drought stress tolerance was determined based on a set of morpho-physiological parameters including non-destructive measures based on IRTI, such as: canopy temperature (Tc), canopy temperature depression (CTD) and crop water stress index (CWSI) during the growing period and destructive measures at harvest, such as: dry root-shoot ratio (RS ratio), relative water content (RWC) and harvest index (HI). The drought tolerance indices used were drought susceptibility index (DSI) and drought tolerance efficiency (DTE). Results showed that drought stress treatments significantly reduced the RWC, HI, CTD and DSI, whereas, the values of Tc, CWSI, RS ratio and DTE significantly increased for all the genotypes. The cluster analysis from morpho-physiological parameters clustered genotypes in three distinctive groups as per the level of drought stress tolerance. The genotypes with higher values of RS ratio, RWC, HI, DTE and CTD and lower values of DSI, Tc and CWSI were identified as drought-tolerant genotypes. Based on this preliminary screening, the genotypes Digger, Cumra, Indianhead, ILL 5588, ILL 6002 and ILL 5582 were identified as promising drought-tolerant genotypes. It can be concluded that the IRTI analysis is a high-throughput constructive screening tool along with RS ratio, RWC, HI and other drought tolerance indices to define the drought stress tolerance variability within lentil plants. These results provide a foundation for future research directed at identifying powerful drought assessment traits using rapid and non-destructive techniques, such as IRTI along with the yield traits, and understanding the biochemical and molecular mechanisms underlying lentil tolerance to drought stress.
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Affiliation(s)
- Sajitha Biju
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Sigfredo Fuentes
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, 3010, Australia
| | - Dorin Gupta
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, 3010, Australia.
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30
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Trejo C, Else MA, Atkinson CJ. Responses of seminal wheat seedling roots to soil water deficits. JOURNAL OF PLANT PHYSIOLOGY 2018; 223:105-114. [PMID: 29567416 DOI: 10.1016/j.jplph.2018.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 03/05/2018] [Accepted: 03/05/2018] [Indexed: 06/08/2023]
Abstract
The aims of this paper are to develop our understanding of the ways by which soil water deficits influence early wheat root growth responses, particularly how seminal roots respond to soil drying and the extent to which information on differences in soil water content are conveyed to the shoot and their impact on shoot behaviour. To achieve this, wheat seedlings have been grown, individually for around 25 days after germination in segmented soil columns within vertical plastic compartments. Roots were exposed to different soil volumetric moisture contents (SVMC) within the two compartments. Experiments where the soil in the lower compartment was allowed to dry to different extents, while the upper was maintained close to field capacity, showed that wheat seedlings allocated proportionally more root dry matter to the lower drier soil compartment. The total production of root, irrespective of the upper or lower SVMC, was similar and there were no detected effects on leaf growth rate or gas exchange. The response of seminal roots to proportionally increase their allocation of dry matter, to the drier soil was unexpected with such plasticity of roots system development traditionally linked to heterogeneous nutrient distribution than accessing soil water. In experiments where the upper soil compartment was allowed to dry, root growth slowed and leaf growth and gas exchange declined. Subsequent experiments used root growth rates to determine when seminal root tips first came into contact with drying soil, with the intentions of determining how the observed root growth rates were maintained as an explanation for the observed changes in root allocation. Measurements of seminal root ABA and ethylene from roots within the drying soil are interpreted with respect to what is known about the physiological control of root growth in drying soil.
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Affiliation(s)
- Carlos Trejo
- Posgrado en Botánica, Colegio de Postgraduados, Carretera México-Texcoco, Montecillo, Estado de México, CP. 56230, Mexico; University of Greenwich, Natural Resources Institute, Central Avenue, Chatham Maritime, ME4 4TB, UK.
| | - Mark A Else
- NIAB EMR, New Road, East Malling, ME19 6BJ, UK.
| | - Christopher J Atkinson
- University of Greenwich, Natural Resources Institute, Central Avenue, Chatham Maritime, ME4 4TB, UK.
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31
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Li X, Wilkinson S, Shen J, Forde BG, Davies WJ. Stomatal and growth responses to hydraulic and chemical changes induced by progressive soil drying. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:5883-5894. [PMID: 29126265 PMCID: PMC5854116 DOI: 10.1093/jxb/erx381] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Accepted: 10/05/2017] [Indexed: 06/07/2023]
Abstract
A better understanding of physiological responses of crops to drought stress is important for ensuring sustained crop productivity under climate change. Here, we studied the effect on 15-day-old maize (Zea mays L.) plants of a 6 d non-lethal period of soil drying [soil water potential (SWP) decreased from -0.20 MPa to -0.81 MPa]. Root growth was initially stimulated during drying (when SWP decreased from -0.31 MPa to -0.38 MPa, compared with -0.29 MPa in well-watered pots), followed by inhibition during Days 5-6 (SWP from -0.63 MPa to -0.81 MPa). Abscisic acid (ABA) in the root began to accumulate as the root water potential declined during Days 2-3. Leaf elongation was inhibited from Day 4 (SWP less than -0.51 MPa), just after leaf ABA content began to increase, but coinciding with a decline in leaf water potential. The stomatal conductance was restricted earlier in the younger leaf (fourth) (on Day 3) than in the older leaf (third). The ethylene content of leaves and roots decreased during drying, but after the respective increase in ABA contents. This work identified critical timing of hydraulic and chemical changes at the onset of soil drying, which can be important in initiating early stomatal and growth responses to drought.
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Affiliation(s)
- Xiaoqing Li
- Lancaster Environment Centre, Lancaster University, UK
| | | | - Jianbo Shen
- Key Laboratory of Plant-Soil Interactions, Department of Plant Nutrition, Ministry of Education, China Agricultural University, China
| | - Brian G Forde
- Lancaster Environment Centre, Lancaster University, UK
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32
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Li X, Chen L, Forde BG, Davies WJ. The Biphasic Root Growth Response to Abscisic Acid in Arabidopsis Involves Interaction with Ethylene and Auxin Signalling Pathways. FRONTIERS IN PLANT SCIENCE 2017; 8:1493. [PMID: 28890725 PMCID: PMC5574904 DOI: 10.3389/fpls.2017.01493] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2017] [Accepted: 08/11/2017] [Indexed: 05/18/2023]
Abstract
Exogenous abscisic acid (ABA) is known to either stimulate or inhibit root growth, depending on its concentration. In this study, the roles of ethylene and auxin in this biphasic effect of ABA on root elongation were investigated using chemical inhibitors and mutants. Inhibitors of ethylene perception and biosynthesis and an auxin influx inhibitor were all found to block the inhibitory effect of high ABA concentrations, but not the stimulatory effect of low ABA concentrations. In addition, three ethylene-insensitive mutants (etr1-1, ein2-1, and ein3-1), two auxin influx mutants (aux1-7, aux1-T) and an auxin-insensitive mutant (iaa7/axr2-1) were all insensitive to the inhibitory effect of high ABA concentrations. In the case of the stimulatory effect of low ABA concentrations, it was blocked by two different auxin efflux inhibitors and was less pronounced in an auxin efflux mutant (pin2/eir1-1) and in the iaa7/axr2-1 auxin-insensitive mutant. Thus it appears that the stimulatory effect seen at low ABA concentrations is via an ethylene-independent pathway requiring auxin signalling and auxin efflux through PIN2/EIR1, while the inhibitory effect at high ABA concentrations is via an ethylene-dependent pathway requiring auxin signalling and auxin influx through AUX1.
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Affiliation(s)
| | - Lin Chen
- *Correspondence: Lin Chen, ; Xiaoqing Li,
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33
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Seeve CM, Cho IJ, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ. Water-deficit-induced changes in transcription factor expression in maize seedlings. PLANT, CELL & ENVIRONMENT 2017; 40:686-701. [PMID: 28039925 DOI: 10.1111/pce.12891] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 12/16/2016] [Accepted: 12/19/2016] [Indexed: 05/15/2023]
Abstract
Plants tolerate water deficits by regulating gene networks controlling cellular and physiological traits to modify growth and development. Transcription factor (TF)-directed regulation of transcription within these gene networks is key to eliciting appropriate responses. In this study, reverse transcription quantitative PCR (RT-qPCR) was used to examine the abundance of 618 transcripts from 536 TF genes in individual root and shoot tissues of maize seedlings grown in vermiculite under well-watered (water potential of -0.02 MPa) and water-deficit conditions (water potentials of -0.3 and -1.6 MPa). A linear mixed model identified 433 TF transcripts representing 392 genes that differed significantly in abundance in at least one treatment, including TFs that intersect growth and development and environmental stress responses. TFs were extensively differentially regulated across stressed maize seedling tissues. Hierarchical clustering revealed TFs with stress-induced increased abundance in primary root tips that likely regulate root growth responses to water deficits, possibly as part of abscisic acid and/or auxin-dependent signaling pathways. Ten of these TFs were selected for validation in nodal root tips of drought-stressed field-grown plants (late V1 to early V2 stage). Changes in abundance of these TF transcripts under a field drought were similar to those observed in the seedling system.
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Affiliation(s)
- Candace M Seeve
- Plant Genetics Research Unit, USDA-ARS, Columbia, MO, 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA
| | - In-Jeong Cho
- Plant Genetics Research Unit, USDA-ARS, Columbia, MO, 65211, USA
| | - Leonard B Hearne
- Statistics Department, University of Missouri, Columbia, MO, 65211, USA
| | | | - Trupti Joshi
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA
- Department of Molecular Microbiology and Immunology, School of Medicine, University of Missouri, Columbia, MO, 65211, USA
- Informatics Institute and Christopher S Bond Life Science Center, Columbia, MO, 65211, USA
| | - Dante O Smith
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA
- Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA
| | - Robert E Sharp
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA
- Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA
| | - Melvin J Oliver
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA
- Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA
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34
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Hua Y, Zhou T, Ding G, Yang Q, Shi L, Xu F. Physiological, genomic and transcriptional diversity in responses to boron deficiency in rapeseed genotypes. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:5769-5784. [PMID: 27639094 PMCID: PMC5066495 DOI: 10.1093/jxb/erw342] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Allotetraploid rapeseed (Brassica napus L. AnAnCnCn, 2n=4x=38) is highly susceptible to boron (B) deficiency, a widespread limiting factor that causes severe losses in seed yield. The genetic variation in the sensitivity to B deficiency found in rapeseed genotypes emphasizes the complex response architecture. In this research, a B-inefficient genotype, 'Westar 10' ('W10'), responded to B deficiencies during vegetative and reproductive development with an over-accumulation of reactive oxygen species, severe lipid peroxidation, evident plasmolysis, abnormal floral organogenesis, and widespread sterility compared to a B-efficient genotype, 'Qingyou 10' ('QY10'). Whole-genome re-sequencing (WGS) of 'QY10' and 'W10' revealed a total of 1 605 747 single nucleotide polymorphisms and 218 755 insertions/deletions unevenly distributed across the allotetraploid rapeseed genome (~1130Mb). Digital gene expression (DGE) profiling identified more genes related to B transporters, antioxidant enzymes, and the maintenance of cell walls and membranes with higher transcript levels in the roots of 'QY10' than in 'W10' under B deficiency. Furthermore, based on WGS and bulked segregant analysis of the doubled haploid (DH) line pools derived from 'QY10' and 'W10', two significant quantitative trait loci (QTLs) for B efficiency were characterized on chromosome C2, and DGE-assisted QTL-seq analyses then identified a nodulin 26-like intrinsic protein gene and an ATP-binding cassette (ABC) transporter gene as the corresponding candidates regulating B efficiency. This research facilitates a more comprehensive understanding of the differential physiological and transcriptional responses to B deficiency and abundant genetic diversity in rapeseed genotypes, and the DGE-assisted QTL-seq analyses provide novel insights regarding the rapid dissection of quantitative trait genes in plant species with complex genomes.
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Affiliation(s)
- Yingpeng Hua
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China
| | - Ting Zhou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China
| | - Guangda Ding
- Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China
| | - Qingyong Yang
- College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China
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Fletcher RS, Herrmann D, Mullen JL, Li Q, Schrider DR, Price N, Lin J, Grogan K, Kern A, McKay JK. Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing. G3 (BETHESDA, MD.) 2016; 6:793-803. [PMID: 26801646 PMCID: PMC4825650 DOI: 10.1534/g3.115.021279] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Accepted: 01/17/2016] [Indexed: 11/24/2022]
Abstract
Brassica napus is a globally important oilseed for which little is known about the genetics of drought adaptation. We previously mapped twelve quantitative trait loci (QTL) underlying drought-related traits in a biparental mapping population created from a cross between winter and spring B. napus cultivars. Here we resequence the genomes of the mapping population parents to identify genetic diversity across the genome and within QTL regions. We sequenced each parental cultivar on the Illumina HiSeq platform to a minimum depth of 23 × and performed a reference based assembly in order to describe the molecular variation differentiating them at the scale of the genome, QTL and gene. Genome-wide patterns of variation were characterized by an overall higher single nucleotide polymorphism (SNP) density in the A genome and a higher ratio of nonsynonymous to synonymous substitutions in the C genome. Nonsynonymous substitutions were used to categorize gene ontology terms differentiating the parent genomes along with a list of putative functional variants contained within each QTL. Marker assays were developed for several of the discovered polymorphisms within a pleiotropic QTL on chromosome A10. QTL analysis with the new, denser map showed the most associated marker to be that developed from an insertion/deletion polymorphism located in the candidate gene Bna.FLC.A10, and it was the only candidate within the QTL interval with observed polymorphism. Together, these results provide a glimpse of genome-wide variation differentiating annual and biennial B. napus ecotypes as well as a better understanding of the genetic basis of root and drought phenotypes.
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Affiliation(s)
| | - David Herrmann
- Cargill Specialty Seeds & Oils, Fort Collins, Colorado 80525
| | - Jack L Mullen
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, Colorado 80523
| | - Qinfei Li
- College of Agronomy and Biotechnology, Southwest University, Chongqing 400716, China
| | - Daniel R Schrider
- Department of Genetics, Rutgers University, Piscataway, New Jersey 08854
| | - Nicholas Price
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, Colorado 80523
| | - Junjiang Lin
- Department of Computer Science, University of Toronto, Ontario M5S 2J7, Canada
| | - Kelsi Grogan
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, Colorado 80523
| | - Andrew Kern
- Department of Genetics, Rutgers University, Piscataway, New Jersey 08854
| | - John K McKay
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, Colorado 80523
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Avramova V, Nagel KA, AbdElgawad H, Bustos D, DuPlessis M, Fiorani F, Beemster GTS. Screening for drought tolerance of maize hybrids by multi-scale analysis of root and shoot traits at the seedling stage. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:2453-66. [PMID: 26889006 DOI: 10.1093/jxb/erw055] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
We studied the drought response of eight commercial hybrid maize lines with contrasting drought sensitivity together with the reference inbred line B73 using a non-invasive platform for root and shoot phenotyping and a kinematics approach to quantify cell level responses in the leaf. Drought treatments strongly reduced leaf growth parameters including projected leaf area, elongation rate, final length and width of the fourth and fifth leaf. Physiological measurements including water use efficiency, chlorophyll fluorescence and photosynthesis were also significantly affected. By performing a kinematic analysis, we show that leaf growth reduction in response to drought is mainly due to a decrease in cell division rate, whereas a marked reduction in cell expansion rate is compensated by increased duration of cell expansion. Detailed analysis of root growth in rhizotrons under drought conditions revealed a strong reduction in total root length as well as rooting depth and width. This was reflected by corresponding decreases in fresh and dry weight of the root system. We show that phenotypic differences between lines differing in geographic origin (African vs. European) and in drought tolerance under field conditions can already be identified at the seedling stage by measurements of total root length and shoot dry weight of the plants. Moreover, we propose a list of candidate traits that could potentially serve as traits for future screening strategies.
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Affiliation(s)
- Viktoriya Avramova
- Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerpen, Belgium
| | - Kerstin A Nagel
- IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Hamada AbdElgawad
- Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerpen, Belgium
| | - Dolores Bustos
- Instituto de Investgatión de Fisiología y Recursos Genéticos Vegetales, Centro de Investigaciones Agropecuarias (CIAP), Instituto Nacional de Tecnología Agropecuaria (INTA), X5020ICA Cordoba, Argentina
| | - Magdeleen DuPlessis
- Department of Plant Production and Soil Science, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa
| | - Fabio Fiorani
- IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Gerrit T S Beemster
- Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerpen, Belgium
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Sutka MR, Manzur ME, Vitali VA, Micheletto S, Amodeo G. Evidence for the involvement of hydraulic root or shoot adjustments as mechanisms underlying water deficit tolerance in two Sorghum bicolor genotypes. JOURNAL OF PLANT PHYSIOLOGY 2016; 192:13-20. [PMID: 26803215 DOI: 10.1016/j.jplph.2016.01.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2015] [Revised: 01/06/2016] [Accepted: 01/06/2016] [Indexed: 05/26/2023]
Abstract
Sorghum bicolor (L.) Moench is an ancient drought-tolerant crop with potential to sustain high yields even in those environments where water is limiting. Understanding the performance of this species in early phenological stages could be a useful tool for future yield improvement programs. The aim of this work was to study the response of Sorghum seedlings under water deficit conditions in two genotypes (RedLandB2 and IS9530) that are currently employed in Argentina. Morphological and physiological traits were studied to present an integrated analysis of the shoot and root responses. Although both genotypes initially developed a conserved and indistinguishable response in terms of drought tolerance parameters (growth rate, biomass reallocation, etc.), water regulation displayed different underlying strategies. To avoid water loss, both genotypes adjusted their plant hydraulic resistance at different levels: RedLandB2 regulated shoot resistance through stomata (isohydric strategy), while IS9530 controlled root resistance (anisohydric strategy). Moreover, only in IS9530 was root hydraulic conductance restricted in the presence of HgCl2, in agreement with water movement through cell-to-cell pathways and aquaporins activity. The different responses between genotypes suggest a distinct strategy at the seedling stage and add new information that should be considered when evaluating Sorghum phenotypic plasticity in changing environments.
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Affiliation(s)
- Moira R Sutka
- Departamento de Biodiversidad y Biología Experimental e Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA, CONICET-UBA), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, (C1428EGA) Buenos Aires, Argentina
| | - Milena E Manzur
- Departamento de Biodiversidad y Biología Experimental e Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA, CONICET-UBA), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, (C1428EGA) Buenos Aires, Argentina
| | - Victoria A Vitali
- Departamento de Biodiversidad y Biología Experimental e Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA, CONICET-UBA), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, (C1428EGA) Buenos Aires, Argentina
| | - Sandra Micheletto
- CERZOS-CONICET, Camino La Carrindanga Km 7, (8000) Bahía Blanca, Argentina
| | - Gabriela Amodeo
- Departamento de Biodiversidad y Biología Experimental e Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA, CONICET-UBA), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, (C1428EGA) Buenos Aires, Argentina.
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38
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Bin Rahman ANMR, Zhang J. Flood and drought tolerance in rice: opposite but may coexist. Food Energy Secur 2016. [DOI: 10.1002/fes3.79] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- A. N. M. Rubaiyath Bin Rahman
- School of Life Sciences and State Key Laboratory of Agrobiotechnology The Chinese University of Hong Kong Hong Kong China
| | - Jianhua Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology The Chinese University of Hong Kong Hong Kong China
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Zwicke M, Picon-Cochard C, Morvan-Bertrand A, Prud'homme MP, Volaire F. What functional strategies drive drought survival and recovery of perennial species from upland grassland? ANNALS OF BOTANY 2015; 116:1001-15. [PMID: 25851134 PMCID: PMC4640119 DOI: 10.1093/aob/mcv037] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Revised: 01/26/2015] [Accepted: 02/24/2015] [Indexed: 05/17/2023]
Abstract
BACKGROUND AND AIMS Extreme climatic events such as severe droughts are expected to increase with climate change and to limit grassland perennity. The present study aimed to characterize the adaptive responses by which temperate herbaceous grassland species resist, survive and recover from a severe drought and to explore the relationships between plant resource use and drought resistance strategies. METHODS Monocultures of six native perennial species from upland grasslands and one Mediterranean drought-resistant cultivar were compared under semi-controlled and non-limiting rooting depth conditions. Above- and below-ground traits were measured under irrigation in spring and during drought in summer (50 d of withholding water) in order to characterize resource use and drought resistance strategies. Plants were then rehydrated and assessed for survival (after 15 d) and recovery (after 1 year). KEY RESULTS Dehydration avoidance through water uptake was associated with species that had deep roots (>1·2 m) and high root mass (>4 kg m(-3)). Cell membrane stability ensuring dehydration tolerance of roots and meristems was positively correlated with fructan content and negatively correlated with sucrose content. Species that survived and recovered best combined high resource acquisition in spring (leaf elongation rate >9 mm d(-1) and rooting depth >1·2 m) with both high dehydration avoidance and tolerance strategies. CONCLUSIONS Most of the native forage species, dominant in upland grassland, were able to survive and recover from extreme drought, but with various time lags. Overall the results suggest that the wide range of interspecific functional strategies for coping with drought may enhance the resilience of upland grassland plant communities under extreme drought events.
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Affiliation(s)
- Marine Zwicke
- INRA, UR874, Grassland Ecosystem Research Team, 5 chemin de Beaulieu, F-63039 Clermont-Ferrand, France
| | - Catherine Picon-Cochard
- INRA, UR874, Grassland Ecosystem Research Team, 5 chemin de Beaulieu, F-63039 Clermont-Ferrand, France,
| | - Annette Morvan-Bertrand
- Normandie Université, France, UCBN, UMR 950 Ecophysiologie Végétale and Agronomie, Nutritions NCS, F-14032 Caen, France, INRA, UMR 950 EVA, F-14032 Caen, France and
| | - Marie-Pascale Prud'homme
- Normandie Université, France, UCBN, UMR 950 Ecophysiologie Végétale and Agronomie, Nutritions NCS, F-14032 Caen, France, INRA, UMR 950 EVA, F-14032 Caen, France and
| | - Florence Volaire
- INRA, USC 1338, CEFE UMR 5175, Université de Montpellier-Université Paul Valéry-EPHE, 1919 route de Mende, F-34293 Montpellier Cedex 5, France
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Fletcher RS, Mullen JL, Heiliger A, McKay JK. QTL analysis of root morphology, flowering time, and yield reveals trade-offs in response to drought in Brassica napus. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:245-56. [PMID: 25371500 PMCID: PMC4265167 DOI: 10.1093/jxb/eru423] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Revised: 08/16/2014] [Accepted: 09/15/2014] [Indexed: 05/18/2023]
Abstract
Drought escape and dehydration avoidance represent alternative strategies for drought adaptation in annual crops. The mechanisms underlying these two strategies are reported to have a negative correlation, suggesting a trade-off. We conducted a quantitative trait locus (QTL) analysis of flowering time and root mass, traits representing each strategy, in Brassica napus to understand if a trade-off exists and what the genetic basis might be. Our field experiment used a genotyped population of doubled haploid lines and included both irrigated and rainfed treatments, allowing analysis of plasticity in each trait. We found strong genetic correlations among all traits, suggesting a trade-off among traits may exist. Summing across traits and treatments we found 20 QTLs, but many of these co-localized to two major QTLs, providing evidence that the trade-off is genetically constrained. To understand the mechanistic relationship between root mass, flowering time, and QTLs, we analysed the data by conditioning upon correlated traits. Our results suggest a causal model where such QTLs affect root mass directly as well as through their impacts on flowering time. Additionally, we used draft Brassica genomes to identify orthologues of well characterized Arabidopsis thaliana flowering time genes as candidate genes. This research provides valuable clues to breeding for drought adaptation as it is the first to analyse the inheritance of the root system in B. napus in relation to drought.
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Affiliation(s)
- Richard S Fletcher
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523, USA Cargill Specialty Seeds and Oils, Fort Collins, CO 80525, USA
| | - Jack L Mullen
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523, USA
| | - Annie Heiliger
- Cargill Specialty Seeds and Oils, Fort Collins, CO 80525, USA Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523, USA
| | - John K McKay
- Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523, USA Plant Genomics LLC, Fort Collins, CO 80524, USA
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Rich SM, Watt M. Soil conditions and cereal root system architecture: review and considerations for linking Darwin and Weaver. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:1193-208. [PMID: 23505309 DOI: 10.1093/jxb/ert043] [Citation(s) in RCA: 95] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Charles Darwin founded root system architecture research in 1880 when he described a root bending with gravity. Curving, elongating, and branching are the three cellular processes in roots that underlie root architecture. Together they determine the distribution of roots through soil and time, and hence the plants' access to water and nutrients, and anchorage. Most knowledge of these cellular processes comes from seedlings of the model dicotyledon, Arabidopsis, grown in soil-less conditions with single treatments. Root systems in the field, however, face multiple stimuli that interact with the plant genetics to result in the root system architecture. Here we review how soil conditions influence root system architecture; focusing on cereals. Cereals provide half of human calories, and their root systems differ from those of dicotyledons. We find that few controlled-environment studies combine more than one soil stimulus and, those that do, highlight the complexity of responses. Most studies are conducted on seedling roots; those on adult roots generally show low correlations to seedling studies. Few field studies report root and soil conditions. Until technologies are available to track root architecture in the field, soil analyses combined with knowledge of the effects of factors on elongation and gravitropism could be ranked to better predict the interaction between genetics and environment (G×E) for a given crop. Understanding how soil conditions regulate root architecture can be effectively used to design soil management and plant genetics that best exploit synergies from G×E of roots.
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Affiliation(s)
- Sarah M Rich
- CSIRO Plant Industry, GPO Box 1600, Canberra ACT, Australia 2601.
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Ranjan A, Pandey N, Lakhwani D, Dubey NK, Pathre UV, Sawant SV. Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought. BMC Genomics 2012. [PMID: 23194183 PMCID: PMC3558330 DOI: 10.1186/1471-2164-13-680] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Background Root length and its architecture govern the adaptability of plants to various stress conditions, including drought stress. Genetic variations in root growth, length, and architecture are genotypes dependent. In this study, we compared the drought-induced transcriptome of four genotypes of Gossypium herbaceum that differed in their drought tolerance adaptability. Three different methodologies, namely, microarray, pyrosequencing, and qRT–PCR, were used for transcriptome analysis and validation. Results The variations in root length and growth were found among four genotypes of G.herbaceum when exposed to mannitol-induced osmotic stress. Under osmotic stress, the drought tolerant genotypes Vagad and GujCot-21 showed a longer root length than did by drought sensitive RAHS-14 and RAHS-IPS-187. Further, the gene expression patterns in the root tissue of all genotypes were analyzed. We obtained a total of 794 differentially expressed genes by microarray and 104928 high-quality reads representing 53195 unigenes from the root transcriptome. The Vagad and GujCot-21 respond to water stress by inducing various genes and pathways such as response to stresses, response to water deprivation, and flavonoid pathways. Some key regulatory genes involved in abiotic stress such as AP2 EREBP, MYB, WRKY, ERF, ERD9, and LEA were highly expressed in Vagad and GujCot-21. The genes RHD3, NAP1, LBD, and transcription factor WRKY75, known for root development under various stress conditions, were expressed specifically in Vagad and GujCot-21. The genes related to peroxidases, transporters, cell wall-modifying enzymes, and compatible solutes (amino acids, amino sugars, betaine, sugars, or sugar alcohols) were also highly expressed in Vagad and Gujcot-21. Conclusion Our analysis highlights changes in the expression pattern of genes and depicts a small but highly specific set of drought responsive genes induced in response to drought stress. Some of these genes were very likely to be involved in drought stress signaling and adaptation, such as transmembrane nitrate transporter, alcohol dehydrogenase, pyruvate decarboxylase, sucrose synthase, and LEA. These results might serve as the basis for an in-depth genomics study of Gossypium herbaceum, including a comparative transcriptome analysis and the selection of genes for root traits and drought tolerance.
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Affiliation(s)
- Alok Ranjan
- CSIR-, National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001, India
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Elazab A, Molero G, Serret MD, Araus JL. Root traits and δ 13C and δ 18O of durum wheat under different water regimes. FUNCTIONAL PLANT BIOLOGY : FPB 2012; 39:379-393. [PMID: 32480790 DOI: 10.1071/fp11237] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2011] [Accepted: 03/13/2012] [Indexed: 06/11/2023]
Abstract
Plant growth, root characteristics and the stable carbon (δ13C) and oxygen (δ18O) composition were studied in durum wheat. Four recombinant inbred lines with good agronomic adaptation were grown under well watered (WW) and water stress (WS) conditions until mid-grain filling in lysimeters. Gas exchange was measured in the flag leaf just before harvest and then the aerial dry matter (Aerial DM), root weight density (RWD) and root length density (RLD) and the specific root length (SRL) were evaluated and the δ13C and δ18O of the roots, the flag leaf blade and the spike were analysed. Water stress decreased stomatal conductance, plant accumulated transpiration and Aerial DM, whereas δ13C and δ18O increased. Genotypic differences were found for all gas-exchange and root traits and isotope signatures. Aerial DM was positively correlated with RLD, regardless of the water regime, whereas it was negatively correlated with δ13C and δ18O, but only under WW conditions. Moreover, RWD and RLD were negatively related to both δ13C and δ18O under the WW regime, but no clear pattern existed under WS. Our study supports the use of δ13C and δ18O as proxies for selecting root traits associated with higher growth in the absence of water stress.
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Affiliation(s)
- Abdelhalim Elazab
- Unitat de Fisiologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 647, 08028 Barcelona, Spain
| | - Gemma Molero
- Unitat de Fisiologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 647, 08028 Barcelona, Spain
| | - Maria Dolores Serret
- Unitat de Fisiologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 647, 08028 Barcelona, Spain
| | - Jos Luis Araus
- Unitat de Fisiologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 647, 08028 Barcelona, Spain
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Peng Y, Li X, Li C. Temporal and spatial profiling of root growth revealed novel response of maize roots under various nitrogen supplies in the field. PLoS One 2012; 7:e37726. [PMID: 22624062 PMCID: PMC3356300 DOI: 10.1371/journal.pone.0037726] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2011] [Accepted: 04/23/2012] [Indexed: 11/18/2022] Open
Abstract
A challenge for Chinese agriculture is to limit the overapplication of nitrogen (N) without reducing grain yield. Roots take up N and participate in N assimilation, facilitating dry matter accumulation in grains. However, little is known about how the root system in soil profile responds to various N supplies. In the present study, N uptake, temporal and spatial distributions of maize roots, and soil mineral N (Nmin) were thoroughly studied under field conditions in three consecutive years. The results showed that in spite of transient stimulation of growth of early initiated nodal roots, N deficiency completely suppressed growth of the later-initiated nodal roots and accelerated root death, causing an early decrease in the total root length at the rapid vegetative growth stage of maize plants. Early N excess, deficiency, or delayed N topdressing reduced plant N content, resulting in a significant decrease in dry matter accumulation and grain yield. Notably, N overapplication led to N leaching that stimulated root growth in the 40–50 cm soil layer. It was concluded that the temporal and spatial growth patterns of maize roots were controlled by shoot growth and local soil Nmin, respectively. Improving N management involves not only controlling the total amount of chemical N fertilizer applied, but also synchronizing crop N demand and soil N supply by split N applications.
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Affiliation(s)
- Yunfeng Peng
- Key Laboratory of Plant-Soil Interactions, Ministry of Education, Department of Plant Nutrition, China Agricultural University, Beijing, China
| | - Xuexian Li
- Key Laboratory of Plant-Soil Interactions, Ministry of Education, Department of Plant Nutrition, China Agricultural University, Beijing, China
| | - Chunjian Li
- Key Laboratory of Plant-Soil Interactions, Ministry of Education, Department of Plant Nutrition, China Agricultural University, Beijing, China
- * E-mail:
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Islam M, Garcia S, Horadagoda A. Effects of irrigation and rates and timing of nitrogen fertilizer on dry matter yield, proportions of plant fractions of maize and nutritive value and in vitro gas production characteristics of whole crop maize silage. Anim Feed Sci Technol 2012. [DOI: 10.1016/j.anifeedsci.2011.11.013] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Hummel I, Pantin F, Sulpice R, Piques M, Rolland G, Dauzat M, Christophe A, Pervent M, Bouteillé M, Stitt M, Gibon Y, Muller B. Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis. PLANT PHYSIOLOGY 2010; 154:357-72. [PMID: 20631317 PMCID: PMC2938159 DOI: 10.1104/pp.110.157008] [Citation(s) in RCA: 248] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2010] [Accepted: 07/09/2010] [Indexed: 05/18/2023]
Abstract
Growth and carbon (C) fluxes are severely altered in plants exposed to soil water deficit. Correspondingly, it has been suggested that plants under water deficit suffer from C shortage. In this study, we test this hypothesis in Arabidopsis (Arabidopsis thaliana) by providing an overview of the responses of growth, C balance, metabolites, enzymes of the central metabolism, and a set of sugar-responsive genes to a sustained soil water deficit. The results show that under drought, rosette relative expansion rate is decreased more than photosynthesis, leading to a more positive C balance, while root growth is promoted. Several soluble metabolites accumulate in response to soil water deficit, with K(+) and organic acids as the main contributors to osmotic adjustment. Osmotic adjustment costs only a small percentage of the daily photosynthetic C fixation. All C metabolites measured (not only starch and sugars but also organic acids and amino acids) show a diurnal turnover that often increased under water deficit, suggesting that these metabolites are readily available for being metabolized in situ or exported to roots. On the basis of 30 enzyme activities, no in-depth reprogramming of C metabolism was observed. Water deficit induces a shift of the expression level of a set of sugar-responsive genes that is indicative of increased, rather than decreased, C availability. These results converge to show that the differential impact of soil water deficit on photosynthesis and rosette expansion results in an increased availability of C for the roots, an increased turnover of C metabolites, and a low-cost C-based osmotic adjustment, and these responses are performed without major reformatting of the primary metabolism machinery.
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Affiliation(s)
- Irène Hummel
- INRA, Ecophysiologie des Plantes sous Stress Environnementaux, UMR 759, Montpellier, France
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