Pathway and mechanism of nitrogen transformation during composting: Functional enzymes and genes under different concentrations of PVP-AgNPs

Insight into mitigation mechanisms of N2O emission by biochar during agricultural waste composting

The effects and mitigation mechanisms of biochar added at different composting stages on N2O emission were investigated. Four treatments were set as follows: CK: control, BB10%: +10 % biochar at beginning of composting, BB5%&T5%: +5% biochar at beginning and + 5 % biochar after thermophilic stage of composting, BT10%: +10 % after thermophilic stage of composting. Results showed that treatment BB10%, BB5%&T5%, and BT10% reduced total N2O emissions by 55 %, 37 %, and 36 %, respectively. N2O emission was closely related to most physicochemical properties, while it was only related to amoA gene and hydroxylamine oxidoreductase. Different addition strategies of biochar changed the contributions of physicochemical properties, functional genes and enzymes to N2O emission. Organic matter and C/N contributed 23.7 % and 27.6 % of variations in functional gene abundances (P < 0.05), respectively. pH and C/N (P < 0.05) contributed 37.3 % and 17.3 % of variations in functional enzyme activities. These findings provided valuable insights into mitigating N2O emissions during composting.

Effects of N levels on land productivity and N2O emissions in maize-soybean relay intercropping

BACKGROUND

Relay intercropping of maize and soybean can improve land productivity. However, the mechanism behind N2O emissions in this practice remains unclear. A two-factor randomized block field trial was conducted to reveal the mechanism of N2O emissions in a full additive maize-soybean relay intercropping. Factor A was three cropping systems - that is, monoculture maize (Zea mays L.), monoculture soybean (Glycine max L. Merr.) and maize-soybean relay intercropping. Factor B was different N supply, containing no N, reduced N and conventional N. Differences in N2O emissions, soil properties, rhizosphere bacterial communities and yield advantage were evaluated.

RESULTS

The land equivalent ratio was 1.55-2.44, and the cumulative N2O emission (C E N 2 O $$ \mathrm{C}{\mathrm{E}}_{{\mathrm{N}}_2\mathrm{O}} $$ ) was notably lower by 60.2% in intercropping than in monoculture, respectively. Reduced N declinedC E N 2 O $$ \mathrm{C}{\mathrm{E}}_{{\mathrm{N}}_2\mathrm{O}} $$ without penalty on the yield advantages. The relay intercropping shifted soil properties - for example, soil organic matter, total N,NH 4 + $$ {\mathrm{NH}}_4^{+} $$ and protease activity - and improved the soil microorganism community - for example, Proteobacteria and Acidobacteria. Intercropping reducedC E N 2 O $$ \mathrm{C}{\mathrm{E}}_{{\mathrm{N}}_2\mathrm{O}} $$ by directly suppressing nirS- and amoA-regulated N2O generation during soil N cycling, or nirS- and amoA-mediated soil properties shifted to reduceC E N 2 O $$ \mathrm{C}{\mathrm{E}}_{{\mathrm{N}}_2\mathrm{O}} $$ indirectly. Reduced N directly reducedC E N 2 O $$ \mathrm{C}{\mathrm{E}}_{{\mathrm{N}}_2\mathrm{O}} $$ by decreasing soil N content and reducing soil microorganism activities to alleviate N2O produced in soil N cycling.

CONCLUSION

Conducting a full additive maize-soybean relay intercropping with reduced nitrogen supply provides a way to alleviate N2O emissions without the penalty on the yield advantage by changing rhizosphere bacterial communities and soil N cycling. © 2024 Society of Chemical Industry.

Insight into N2O emission and denitrifier communities under different aeration intensities in composting of cattle manure from perspective of multi-factor interaction analysis

Nitrous oxide (N2O) emission from composting is a significant contributor to greenhouse effect and ozone depletion, which poses a threat to environment. To address the challenge of mitigating N2O emission during composting, this study investigated the response of N2O emission and denitrifier communities (detected by metagenome sequencing) to aeration intensities of 6 L/min (C6), 12 L/min (C12), and 18 L/min (C18) in cattle manure composting using multi-factor interaction analysis. Results showed that N2O emission occurred mainly at mesophilic phase. Cumulative N2O emission (QN2O, 9.79 mg·kg-1 DW) and total nitrogen loss (TN loss, 16.40 %) in C12 composting treatment were significantly lower than those in the other two treatments. The lower activity of denitrifying enzymes and the more complex and balanced network of denitrifiers and environmental factors might be responsible for the lower N2O emission. Denitrification was confirmed to be the major pathway for N2O production. Moisture content (MC) and Luteimonas were the key factors affecting N2O emission, and nosZ-carrying denitrifier played a significant role in reducing N2O emission. Although relative abundance of nirS was lower than that of nirK significantly (P < 0.05), nirS was the key gene influencing N2O emission. Community composition of denitrifier varied significantly with different aeration treatments (R2 = 0.931, P = 0.001), and Achromobacter was unique to C12 at mesophilic phase. Physicochemical factors had higher effect on QN2O, whereas denitrifying genes, enzymes and NOX- had lower effect on QN2O in C12. The complex relationship between N2O emission and the related factors could be explained by multi-factor interaction analysis more comprehensively. This study provided a novel understanding of mechanism of N2O emission regulated by aeration intensity in composting.

Strategies of soil microbial N-cycling in different cadmium contaminated soil with wheat straw return

Cadmium contamination inevitably affects the microbially mediated transformation of nitrogen in soils with wheat straw return. The responses of nitrogen functional microorganisms to cadmium in acidic and alkaline soils under wheat straw returned are still unclear. In this study, quantitative polymerase chain reaction (qPCR) and sequencing of nitrifying and denitrifying bacteria were performed to investigate the effects of wheat straw application on nitrogen conversion in different Cd-contaminated soils during an incubation experiment. Results showed that the presence of Cd decreased the abundance of hao gene catalyzing nitrification and norB gene catalyzing denitrification process, resulting the accumulation of NH4+-N and reduction of NO3--N in the acidic soils. Additionally, Cd-contamination stimulates the nitrification catalyzed by bacterial amoA gene and thus reduced the NH4+-N content in the alkaline soils. Meanwhile, Cd dominated the decrease of NO3--N content by promoting denitrification process catalyzed by nirS gene. Among all nitrifying and denitrifying microorganisms, Nitrosospira are tolerant to Cd stress under alkaline condition but sensitive to acidic condition, which dominantly harbored hao gene in the acidic soils and bacterial amoA gene in the alkaline soils. This study aimed to provide reasonable information for the rational adoption of wheat straw returning strategies to realize nitrogen regulation in Cd-contaminated farmland soil.

Effects of C/N ratio on N2O emissions and nitrogen functional genes during vegetable waste composting

Nitrous oxide (N2O) generation during composting not only leads to losses of nitrogen (N) but also reduces the agronomic values and environmental benefits of composting. This study aimed to investigate the effect of the C/N ratio on N2O emissions and its underlying mechanisms at the genetic level during the composting of vegetable waste. The experiment was set up with three treatments, including low C/N treatment (LT, C/N = 18), middle C/N treatment (MT, C/N = 30), and high C/N treatment (HT, C/N = 50). The results showed that N2O emission was mainly concentrated in the cooling and maturation periods, and the cumulative N2O emissions decreased as the C/N ratio increased. Specifically, the cumulative N2O emission was 57,401 mg in LT, significantly higher than 2155 mg in MT and 1353 mg in HT. Lowering the C/N ratio led to increasing TN, NH4+-N, and NO3--N contents throughout the composting process. All detected nitrification-related gene abundances in LT continued to increase during composting, significantly surpassing those in MT during the cooling period. By contrast, in HT, there was a slight increase in the abundance of detected nitrification-related genes but a significant decrease in the abundance of narG, napA, and norB genes in the thermophilic and cooling periods. The structural equation model revealed that hao and nosZ genes were vital in N2O emissions. In conclusion, increasing the C/N ratio effectively contributed to N2O reduction during vegetable waste composting.

Antibacterial applications of biologically synthesized Pichia pastoris silver nanoparticles

Objectives

This article highlights the biological synthesis of silver nanoparticles (AgNPs) with their characteristic analysis, and it focuses on the application of synthesized NPs against multidrug resistance (MDR) bacteria. A cytotoxicity study was performed to assess the biocompatibility.

Methods

Silver nanoparticle (AgNPs) formation was confirmed by different characterization methods such as UV-Vis spectrophotometer, Dynamic light scattering (DLS)- Zeta, Fourier transform infrared (FTIR), and Transmission electron microscope (TEM). The antimicrobial activity of the AgNPs was checked against various bacterial strains of Staphylococcus aureus (S. aureus), Escherichia coli (E. coli), Enterococcus faecalis (E. faecalis), and Klebsiella pneumonia (K. pneumonia) by disc diffusion, minimum inhibition concentration test (MIC), and kinetic studies. The cytotoxicity of NPs against the Vero cell line was studied by cytotoxic assay.

Results

The primary analysis of the formation of nanoparticles (NPs) was made by UV-Vis spectrophotometric analysis at 400 nm. At the same time, the efficient capping checked by FTIR shows the presence of a functional group at different wavelengths 3284, 1641,1573,1388,1288, and 1068 cm-1. At the same time, the transmission electron microscopic analysis (TEM) and DLS show that the shape and size of the synthesized NPs possess an average size of around ∼10-30 nm with spherical morphology. Further, the zeta potential confirmed the stability of the NPs. While the yield of NPs formation from silver salt was determined by an online yield calculator with the EDX analysis results. Synthesized NPs showed bactericidal effects against all the selected MDR pathogens with nontoxic effects against mammalian cells.

Conclusion

Our findings indicate the remarkable antimicrobial activity of the biologically synthesized AgNPs, which can be an antimicrobial agent against multi-drug-resistant bacteria.

Metagenomic binning analyses of swine manure composting reveal mechanism of nitrogen cycle amendment using kaolin

The efficient control of nitrogen loss in composting and the enhancement of product quality have become prominent concerns in current research. The positive role of varying concentrations kaolin in reducing nitrogen loss during composting was revealed using metagenomic binning combined with reverse transcription quantitative polymerase chain reaction. The results indicated that the addition of 0.5 % kaolin significantly (P < 0.05) up-regulated the expression of nosZ and nifH on day 35, while concurrently reducing norB abundance, resulting in a reduction of NH3 and N2O emissions by 61.4 % and 17.5 %, respectively. Notably, this study represents the first investigation into the co-occurrence of nitrogen functional genes and heavy metal resistance genes within metagenomic assembly genomes during composting. Emerging evidence indicates that kaolin effectively impedes the binding of Cu/Zn to nirK and nosZ gene reductases through passivation. This study offers a novel approach to enhance compost quality and waste material utilization.

Relating bacterial dynamics and functions to greenhouse gas and odor emissions during facultative heap composting of four kinds of livestock manure

Although facultative heap composting is widely used in small and medium-sized livestock farms in China, there are few studies on greenhouse gas (GHG) and odor emissions from this composting system. This study focused on GHG and odor emissions from facultative heap composting of four types of livestock manure and revealed the relationship between the gaseous emissions and microbial communities. Results showed that pig, sheep, and cow manure reached high compost maturity (germination index (GI) > 70%), whereas chicken manure had higher phytotoxicity (GI = 0.02%) with higher electrical conductivity and a lower carbon/nitrogen ratio. The four manure types significantly differed in the total GHG emission, with the following pattern: pig manure (308 g CO2-eq·kg-1) > cow manure (146 g CO2-eq·kg-1) > chicken manure (136 g CO2-eq·kg-1) > sheep manure (95 g CO2-eq·kg-1). Bacterium with Fermentative, Methanotrophy and Nitrite respiratory functions (e.g. Pseudomonas and Lactobacillus) are enriched within the pile so that more than 90% of the GHGs are produced in the early (days 0-15) and late (days 36-49) composting periods. CO2 contributed more than 90% in the first 35 d, N2O contributed 40-75% in the late composting period, and CH4 contributed less than 8.0%. NH3 and H2S emissions from chicken and pig manure were 4.8 times those from sheep and cow manure. Overall, the gas emissions from facultative heap composting significantly differed among the four manure types due to the significant differences in their physicochemical properties and microbial communities.

Co-occurrence pattern of ARGs and N-functional genes in the aerobic composting system with initial elevated temperature

Animal manure is known to harbor antibiotic resistance genes (ARGs). Aerobic composting is a prevalent cost-effective and sustainable method to treat animal waste. However, the effect of initially elevated temperature on antibiotic resistome during the composting process is unclear. In this study composting was subjected to initial external heating (EHC) for a period of 5 days compared to conventional composting (CC). After composting ARGs abundance was significantly reduced by 2.43 log in EHC and 1.95 log in CC. Mobile genetic elements (MGEs) also exhibited a reduction of 1.95 log in EHC and 1.49 log in CC. However, during the cooling phase, the genes resisting macrolide lincosamide and streptogramin B (MLSB) rebounded by 0.04 log in CC. The potential human pathogenic bacteria Pseudomonas (41.5-61.5%) and Actinobacteria (98.4-98.8%) were significantly reduced in both treatments and the bulk of targeted antibiotics were eliminated by 80.74% in EHC and 68.98% in CC. ARGs and N-functional genes (NFGs), mainly denitrification genes, were carried by the same microbial species, such as Corynebacterium sp. and Bacillus sp., of the dominant phylum. Redundancy analysis (RDA) revealed that CC microbial communities played a key role in the enrichment of ARGs while in EHC the variation of ARGs was attributed to the composting temperature. The number of high-risk ARGs was also lower in EHC (4) compared with CC (6) on day 30. These results provide insight into the effects of an initially enhanced temperature on ARGs removal and the relationship between ARGs and NFGs during the composting process.

Bidirectional potential effects of DON transformation in vadose zones on groundwater nitrate contamination: Different contributions to nitrification and denitrification

The main cause of groundwater nitrate contamination is the continual downward migration of dissolved nitrogen (N) in vadose zone with leachate. In recent years it has been found that dissolved organic N (DON) rise to forefront due to its great migration capacity and environmental effects. However, it remains unknown how the transformation behaviors of DONs with different properties in vadose zone profile may impact N forms distribution and groundwater nitrate contamination. To address the issue, we conducted a series of 60-day microcosm incubation experiments to investigate the effects of various DONs transformation behaviors on the distribution of N forms, microbial communities, and functional genes. The results revealed that urea and amino acids mineralized immediately after substrates addition. By contrast, amino sugars and proteins caused less dissolved N throughout entire incubation period. The transformation behaviors could substantially alter the microbial communities. Moreover, we discovered that amino sugars remarkably increased the absolute abundances of denitrification function genes. These results delineated that DONs with unique characteristics (such as amino sugar) promoted different N geochemical processes in distinct ways: different contributions to nitrification and denitrification. This can provide new insights for nitrate non-point source pollution control in groundwater.

Effects of silver nanoparticles on denitrification and anammox in sediments of hypertrophic and mesotrophic lakes

The abundant production and wide usage of silver nanoparticles (Ag NPs) inevitably lead to their release into aquatic ecosystems. However, it is still unclear about how Ag NPs influence denitrification and anammox (DA) in freshwater sediments. To address this, the sediments of hypertrophic and mesotrophic lakes were exposed to 0.5 and 50 mg/L Ag NPs under anaerobic conditions for 7 days to explore the effects of Ag NPs on environmental variables, including redox potential (Eh), pH, organic matter (OM) and acid volatile sulfide (AVS), and the resulting influence on DA. Experimental results indicated that NO₃^--N and NH₄⁺-N levels were increased by the low (p > 0.05) and high doses of Ag NPs (p < 0.05) in comparison with the non-Ag control, revealing an inhibitive impact on DA. The level of total nitrogen (TN) was notably increased by the low and high doses of Ag NPs (p < 0.05), perhaps due to inhibited enzyme activity and corresponding encoding gene abundance, which were related to generating gaseous nitrogen such as N₂O and N₂. In addition, environmental factor Eh was significantly raised by Ag NPs (p < 0.05), further inhibiting DA. Moreover, the quantitative analysis unveiled that denitrifying and anammox bacteria in hypertrophic lakes evinced a stronger resistance to Ag NPs toxicity than those in mesotrophic lakes. Overall, our study revealed that short-term exposure to Ag NPs could inhibit DA in sediments. These findings provide an understanding enabling evaluation and prediction of the environmental risks of Ag NPs in freshwater lakes.

Reactive oxygen species accelerate humification process during iron mineral-amended sludge composting

The production of hydroxyl radicals (OH) has been documented during composting. However, the effect of OH on composting efficiency remains unclear. Here, iron mineral supplemented thermophilic composting (imTC) is proposed and demonstrated for enhancing OH production and accelerating the maturation of composting. The results indicated that the maximum OH production of imTC was 1922.74 μmol·kg^-1, which increased by 1.39 times than that of ordinary thermophilic composting (oTC). Importantly, the increase of OH could greatly enhance organic matter degradation and humic substances formation during imTC, resulting in shorting the maturity time by 25 %. Enrichment of laccase-producing bacteria resulted in higher laccase activity (31.85 U·g^-1) in imTC compared with oTC (23.82 U·g^-1), which may have contributed to the higher level of humification in imTC treatment. This work, for the first time, proposes a feasible strategy for improving composting efficiency through the regulation of OH production during aerobic composting.

Effect of hydrothermal pretreatment and compound microbial agents on compost maturity and gaseous emissions during aerobic composting of kitchen waste

Though aerobic composting is commonly used in kitchen waste (KW) disposal, the high-oil and high-salt characteristics of KW could affect composting efficiency and lead to the land using risk of produced fertilizer. The impact of hydrothermal pretreatment (HTP) and addition of compound microbial agent (CMA) on compost maturity, greenhouse gas (GHGs) emissions and bacterial community during the kitchen waste composting were evaluated in the present work. Results indicated that N2O, CH4 and CO2 emissions from treatment by HTP and CMA addition were reduced by 82.72%, 13.77% and 20.78 %, respectively, comparing with the control (without HTP and without CMA addition). The seed germination index (GI) value of the HTP and CMA addition treatment was 1.03 and had the highest maturity in all treatments. Furthermore, the bacterial community analysis indicated that CMA inoculation could increase the relative abundance of genus Bacillus at the thermophilic stage of composting to accelerate organic biodegradation. This work provided important insight into mitigating GHGs emissions and improving compost quality in kitchen waste composting.

Effect of microbial agents on maturity, humification, and stability and the bacterial succession of spent mushroom substrate composting

Two composting experiments were conducted to investigate the effects of commercial microbial agents on microbial succession and nutrient flow such as humification, maturation, and stability during the aerobic composting of the spent mushroom substrate (SMS). The cellulose degradation rate of T (added microbial agents at the initial stage) reached 41.8%, which was much significantly (p < 0.05) higher than that of CK (14.9%). The seed germination index (GI) in T (82.38%) was significantly (p < 0.05) higher than that in CK (74.74%) in the maturation phase. Moreover, the total organic carbon/total nitrogen ratio (C/N) and electrical conductivity (EC) value of T decreased to 10.5 and 2.37 mS/cm, respectively. Chemical detection and fluorescence excitation-emission region integration method (EEM-FRI) analysis showed that the microbial agents significantly accelerated the organic matter (OM) decomposition and promoted the quality of mature compost using SMS as a single raw material. The bacterial abundance of T was significantly richer than the CK due to the addition of microbial agents. The results could provide a comprehensive understanding of adding microbial agents into composting SMS and a scientific feasibility strategy to rational utilization of resources in the edible fungi industry, which was conducive to the waste management and sustainable development of the edible fungi industry.

Differentiated strategies of animal-derived and plant-derived biochar to reduce nitrogen loss during paper mill sludge composting

This work aimed to reveal the differences of nitrogen (N) transformation between animal-derived and plant-derived biochar during paper mill sludge composting. Three treatments were established, including CK (no biochar), ABC (animal-derived biochar), and PBC (plant-derived biochar). Results showed that N loss was reduced by 24.43% and 35.50% in ABC and PBC, respectively, compared with CK. Moreover, the contents of acid-insoluble N (AIN) in ABC and bioavailable organic N (BON) in PBC were 6.180 g/kg and 9.269 g/kg higher than in CK (2.602 g/kg and 8.988 g/kg). The protease activity and bacterial abundance associated with the generation of humic N-containing precursors increased in ABC. Low urease activity and a more complex bacterial N-cycling network were found in PBC. Structural equation model confirmed that AIN formation and BON retention were the dominant strategies for animal-derived and plant-derived biochar, respectively. The findings provided multiple pathways to produce N-enriched compost products.

State of the Art in Smart Portable, Wearable, Ingestible and Implantable Devices for Health Status Monitoring and Disease Management

Several illnesses that are chronic and acute are becoming more relevant as the world's aging population expands, and the medical sector is transforming rapidly, as a consequence of which the need for "point-of-care" (POC), identification/detection, and real time management of health issues that have been required for a long time are increasing. Biomarkers are biological markers that help to detect status of health or disease. Biosensors' applications are for screening for early detection, chronic disease treatment, health management, and well-being surveillance. Smart devices that allow continual monitoring of vital biomarkers for physiological health monitoring, medical diagnosis, and assessment are becoming increasingly widespread in a variety of applications, ranging from biomedical to healthcare systems of surveillance and monitoring. The term "smart" is used due to the ability of these devices to extract data with intelligence and in real time. Wearable, implantable, ingestible, and portable devices can all be considered smart devices; this is due to their ability of smart interpretation of data, through their smart sensors or biosensors and indicators. Wearable and portable devices have progressed more and more in the shape of various accessories, integrated clothes, and body attachments and inserts. Moreover, implantable and ingestible devices allow for the medical diagnosis and treatment of patients using tiny sensors and biomedical gadgets or devices have become available, thus increasing the quality and efficacy of medical treatments by a significant margin. This article summarizes the state of the art in portable, wearable, ingestible, and implantable devices for health status monitoring and disease management and their possible applications. It also identifies some new technologies that have the potential to contribute to the development of personalized care. Further, these devices are non-invasive in nature, providing information with accuracy and in given time, thus making these devices important for the future use of humanity.

The individual and combined effects of polystyrene and silver nanoparticles on nitrogen transformation and bacterial communities in an agricultural soil

The effects of emerging contaminants micro/nanoplastics (MPs/NPs) and silver nanoparticles (Ag NPs) on health have attracted universal concern throughout the world. However, it is unclear on the combined effects of MPs/NPs and Ag NPs on the biogeochemistry cycle such as nitrogen transformation and functional microorganism in the soil. In the present study, we conducted a 45-day soil microcosm experiment with polystyrene (PS) MPs/NPs and Ag NPs to investigate their combined impact on nitrogen cycling and the bacterial community. The results showed that MPs or NPs exerted limited effects on nitrogen transformation in the soil. The combined effects of PS MPs/NPs and Ag NPs were mainly caused by the presence of Ag NPs. However, PS NPs alleviated the inhibition of anammox and denitrification induced by Ag NPs via upregulating anammox-related genes and elevating nitrate and nitrite reductase activities. PS MPs + Ag NPs treatment significantly reduced bacterial diversity. PS MPs/NPs + Ag NPs increased the relative abundances of denitrifying Cupriavidus by 0.32% and 0.06% but decreased nitrogen-fixing functional microorganisms of Microvirga (by 2.05% and 2.24%), Bacillus (by 0.16% and 0.22%), and Herbaspirillum (by 0.14% and 0.07%) at the genus level compared with Ag NPs alone. The significant downregulation of nitrogen-fixing genes (K02586, K02588, and K02591) was observed in PS MPs/NPs + Ag NPs treatment compared to Ag NPs in the nitrogen metabolism pathway. Moreover, g-Lysobacter and g-Aquimonas were identified as biomarkers in PS MPs + Ag NPs and PS NPs + Ag NPs by LEfSe analysis. Our study sheds the light that changes of functional microorganism abundances contributed to the alteration of nitrogen transformation. Taking the particle size of plastics into account will be helpful to accurately assess the combined ecological risks of plastics and nanomaterial contaminants.

Effects of Turning Frequency on Ammonia Emission during the Composting of Chicken Manure and Soybean Straw

Here, we investigated the impact of different turning frequency (TF) on dynamic changes of N fractions, NH3 emission and bacterial/archaeal community during chicken manure composting. Compared to higher TF (i.e., turning every 1 or 3 days in CMS1 or CMS3 treatments, respectively), lower TF (i.e., turning every 5 or 7 days in CMS5 or CMS7 treatments, respectively) decreased NH3 emission by 11.42-18.95%. Compared with CMS1, CMS3 and CMS7 treatments, the total nitrogen loss of CMS5 decreased by 38.03%, 17.06% and 24.76%, respectively. Ammonia oxidizing bacterial/archaeal (AOB/AOA) communities analysis revealed that the relative abundance of Nitrosospira and Nitrososphaera was higher in lower TF treatment during the thermophilic and cooling stages, which could contribute to the reduction of NH3 emission. Thus, different TF had a great influence on NH3 emission and microbial community during composting. It is practically feasible to increase the abundance of AOB/AOA through adjusting TF and reduce NH3 emission the loss of nitrogen during chicken manure composting.

Bacterial Community Structure and Metabolic Function Succession During the Composting of Distilled Grain Waste

Distilled grain waste (DGW) can be converted to organic fertilizer via aerobic composting process without inoculating exogenous microorganisms. To illustrate the material conversion mechanism, this study investigated the dynamic changes of bacterial community structure and metabolic function involved in DGW composting. Results showed that a significant increase in microbial community alpha diversity was observed during DGW composting. Moreover, unique community structures occurred at each composting stage. The dominant phyla were Firmicutes, Proteobacteria, Actinobacteriota, Bacteroidota, Myxococcota, and Chloroflexi, whose abundance varied according to different composting stages. Keystone microbes can be selected as biomarkers for each stage, and Microbispora, Chryseolinea, Steroidobacter, Truepera, and Luteimonas indicating compost maturity. Co-occurrence network analysis revealed a significant relationship between keystone microbes and environmental factors. The carbohydrate and amino acid metabolism were confirmed as the primary metabolic pathways by metabolic function profiles. Furthermore, nitrogen metabolism pathway analysis indicated that denitrification and NH₃ volatilization induced higher nitrogen loss during DGW composting. This study can provide new understanding of the microbiota for organic matter and nitrogen conversion in the composting process of DGW.

Insight into the influence of biochar on nitrification based on multi-level and multi-aspect analyses of ammonia-oxidizing microorganisms during cattle manure composting

In this study, influence of biochar on nitrification was explored using multi-level (DNA, RNA, protein) and multi-aspect (diversity, structure, key community, co-occurrence pattern and functional modules) analyses (M-LAA) of ammonia-oxidizing microorganisms (AOMs) during cattle manure composting. Biochar addition increased the copy numbers and diversity of AOMs, restricted (36.02%) the amoA gene transcripts of archaea but increased (24.53%) those of bacteria, and reduced (75.86%) ammonooxygenase (AMO) activity. Crenarchaeota and Thaumarcheota mediated NH₄⁺-N, Unclassified_k_norank_d_Archaea and Crenarchaeota regulated AMO activity and potential ammonia oxidation (PAO) rates. Nitrosomonas and Nitrosospira were the predominant microbial taxa influencing NH₄⁺-N variation and PAO rates, respectively. Additionally, both Crenarchaeota and Nitrosospira played crucial roles in mediating NO₃^--N and NO₂^--N. Furthermore, biochar altered the network patterns of AOMs community by changing the keystone species and the interactivity among communities. These findings indicated that influence of biochar on nitrification could be better explained using M-LAA of AOMs.

Characterization and structural analysis of a thermophilic GH11 xylanase from compost metatranscriptome

Xylanase is efficient for xylan degradation and widely applied in industries. We found a GH11 family xylanase (Xyn11A) with high thermostability and catalytic activity from compost metatranscriptome. This xylanase has the optimal reaction temperature at 80 °C with the activity of 2907.3 U/mg. The X-ray crystallographic structure shows a typical "right hand" architecture, which is the characteristics of the GH11 family enzymes. Comparing it with the mesophilic XYN II, a well-studied GH11 xylanase from Trichoderma reesei, Xyn11A is more compact with more H-bonds. Our mutagenic results show that the electrostatic interactions in the thumb and palm region of Xyn11A could result in its high thermostability and activity. Introducing a disulfide bond at the N-terminus further increased its optimal reaction temperature to 90 °C with augmented activity. KEY POINTS: • A hyperthermophilic xylanase with high activity was discovered using the metatranscriptomic method. • The mechanisms of thermophilicity and high activity were revealed using X-ray crystallography, mutagenesis, and molecular dynamics simulations. • The thermostability and activity were further improved by introducing a disulfide bond.

Biosynthesis of silver nanoparticles with antimicrobial and anticancer properties using two novel yeasts

AgNPs are nanomaterials with many potential biomedical applications. In this study, the two novel yeast strains HX-YS and LPP-12Y capable of producing biological silver nanoparticles were isolated. Sequencing of ribosomal DNA-ITS fragments, as well as partial D1/D2 regions of 26S rDNA indicated that the strains are related to species from the genus Metschnikowia. The BioAgNPs produced by HX-YS and LPP-12Y at pH 5.0-6.0 and 26 °C ranged in size from 50 to 500 nm. The antibacterial activities of yeast BioAgNPs against five pathogenic bacteria were determined. The highest antibacterial effect was observed on P. aeruginosa, with additional obvious effects on E. coli ATCC8099 and S. aureus ATCC10231. Additionally, the BioAgNPs showed antiproliferative effects on lung cancer cell lines H1975 and A579, with low toxicity in Beas 2B normal lung cells. Therefore, the AgNPs biosynthesized by HX-YS and LPP-12Y may have potential applications in the treatment of bacterial infections and cancer.

Effects of TiO2 and ZnO nanoparticles on vermicomposting of dewatered sludge: studies based on the humification and microbial profiles of vermicompost

Nanoparticles (NPs) are prevalent in dewatered sludge, and their presence increases the environmental risks associated with the subsequent sludge treatment process. However, until now, their potential effects on sludge vermicomposting have not been clarified. This study investigated the effects of NPs on sludge humification and microbial profiles during vermicomposting by comparing fresh dewatered sludge substrates with substrates mixed with 0 mg/kg NPs (control), 100 mg/kg TiO₂, 500 mg/kg TiO₂, 100 mg/kg ZnO, and 500 mg/kg ZnO. The results showed that addition of TiO₂ and ZnO NPs to sludge did not significantly affect the growth rate of earthworms and the superoxide dismutase activity in their guts during vermicomposting. Moreover, higher concentrations of the selected NPs promoted the humification index of sludge by 20.7-49.6%, through the formation of polysaccharides, aromatic substances, and organic acids in final vermicomposts. Compared with the control without NP addition, bacterial community diversity was enhanced in treatments with TiO₂ and ZnO NPs, and dominant genera differed according to the type and concentration of NPs. This study suggests that the presence of TiO₂ and ZnO NP residuals modify the microbial community of sludge, thus promoting sludge humification during vermicomposting.

Evolution of humic substances and the forms of heavy metals during co-composting of rice straw and sediment with the aid of Fenton-like process

The Fenton-like process was established by Fe₃O₄ nanomaterials (NMs) and Phanerochaete chrysosporium or oxalate, and applied to the co-composting of rice straw and sediment to study its effect on the formation of humic substance and the bioavailability of Cd, Cu, and Pb. Results shown that the application of Fenton-like process significantly promoted the passivation of Cd and Cu, while not shown obvious enhancement for Pb. The decrease of exchangeable fraction Cd (EXC-Cd) and the humic acid (HA) content in pile B with Fe₃O₄ NMs and oxalate were highest, which were 22.35% and 20.3 g/kg, respectively. Redundancy analyses (RDA) manifested that the Fenton-like process enhanced the influence of humus substance on the bioavailability of Cd, Cu, and Pb. Excitation-emission matrix (EEM) fluorescence spectra analysis suggested that Fenton-like process could obviously enhance the generation of humic substance. This research provides a new perspective and way for composting to remediate heavy metals pollution.

Gases emission during the continuous thermophilic composting of dairy manure amended with activated oil shale semicoke

NH₃ and greenhouse gases emission are big problems during composting, which can cause great nitrogen nutrient loss and environmental pollution. This study investigated effects of the porous bulking agent of oil shale semicoke and its activated material on the gases emission during the continuous thermophilic composting. Results showed addition of semicoke could significantly reduce the NH₃ emission by 74.65% due to its great adsorption capacity to NH₄⁺-N and NH₃, further the effect could be enhanced to 85.92% when utilizing the activated semicoke with larger pore volume and specific surface area. In addition, the CH₄ emission in the semicoke and activated semicoke group was also greatly mitigated, with a reduction of 67.23% and 87.62% respectively, while the N₂O emission was significantly increased by 93.14% and 100.82%. Quantification analysis of the functional genes found the abundance of mcrA was high at the massive CH₄-producing stage and the archaeal amoA was dominant at the N₂O-producing stage in all the composting groups. Correlation and redundancy analysis suggested there was a positive correlation between the CH₄ emission and mcrA. Addition of semicoke especially activated semicoke could reduce the CH₄ production by inhibiting the methanogens. For the NH₃ and N₂O, it was closely related with the nitrification process conducted by archaeal amoA. Addition of semicoke especially activated semicoke was beneficial for the growth of ammonia-oxidizing archaea, causing the less NH₄⁺-N transformation to NH₃ but more N₂O emission.

Impacts of Ag and Ag2S nanoparticles on the nitrogen removal within vertical flow constructed wetlands treating secondary effluent

In this study, the effects of silver (Ag NPs) and sliver sulfide nanoparticles (Ag₂S NPs) on nitrogen removal and nitrogen functional microbes in constructed wetlands were investigated. The obtained results demonstrated that inhibition extent on nitrogen removal relied on NPs types and high concentrations NPs showed higher negative effects. 0.5 mg/L Ag NPs had no influence on NH₄⁺-N removal, amoA and nxrA gene copies, whereas Ag₂S NPs and Ag⁺ decreased NH₄⁺-N removal by reducing abundances of nitrifying genes. The concentrations of NO₃^--N and TN in all 0.5 mg/L obviously increased compared with control, resulting from decreasing functional genes and denitrifying bacteria. And 0.5 mg/L Ag NPs exhibited largest inhibitory effects, with the highest NO₃^--N effluent concentrations. 2 mg/L Ag NPs decreased NH₄⁺-N removal, but adverse effects gradually vanished with extension of time, whereas both Ag₂S NPs and Ag⁺ at 2 mg/L influenced NH₄⁺-N transformation and decreased the abundance of amoA and nxrA genes and the AOB Nitrosomonas in CWs. Moreover, 2 mg/L of Ag NPs reduced NO₃^--N removal by decreasing abundance of nirS and key denitrifying bacteria. To sum up, the inhibition mechanisms concluded from current results were possibly in that Ag NPs exhibited nanotoxicity rather than ionic toxicity.

Pathways and mechanisms of nitrogen transformation during co-composting of pig manure and diatomite

The aim of this study was to investigate the pathways and mechanisms of nitrogen transformation during the composting process, by adding diatomite (0%, 2.5%, 5%, 10%, 15% and 20%) into initial mixtures of pig manure and sawdust. The results revealed that diatomite facilitated the conversion from NH₄⁺-N to amino acid nitrogen and hydrolysis undefined nitrogen, then reduced NH₃ and N₂O emission by 8.63-35.29% and 14.34-73.21%, respectively. Moreover, the structure and abundance of nitrogen functional genes provided evidence for nitrogen loss. Furthermore, compared with the control (0.03), the treatment blended with 10% diatomite (T3) had the highest value in composting score (-1.27). Additionally, the ratio of carbon and nitrogen (57.30%) was vital for reducing nitrogen loss among all physio-chemical parameters in this study. In conclusion, adding diatomite was a practical way to enhance nitrogen conservation and increase quality of end products, and the optimum added dosage was at 10%.

Comprehensive analysis of environmental factors mediated microbial community succession in nitrogen conversion and utilization of ex situ fermentation system

An ex situ fermentation system (EFS) can efficiently transform and utilize nitrogen in swine wastewater and reduce environmental pollution. High-throughput sequencing was used to study the relationship between the succession of total bacteria, fungi, and functional bacteria in a swine wastewater EFS, as well as nitrogen metabolism and environmental factors. During the fermentation process, inorganic nitrogen gradually accumulated and the pH changed rapidly from weakly acidic to alkaline. The dominant genera of bacteria, fungi and functional bacteria carrying amoA, nirK, and nosZ genes changed gradually, and Clostridium sensu stricto 1, Thermomyces, Nitrosomonas, Mesorhizobium, and Pseudomonas genera became the most abundant, which showed positive correlations with temperature, pH, and nitrogen levels. Other changed populations showed different correlations with environmental factors, and physical-chemical factors explained more variation of microorganisms than nitrogen resources. These findings contribute to a comprehensive understanding of nitrogen metabolism in EFSs from a molecular micro-ecology perspective.

Temperature-induced changes in the proteome of Pseudomonas aeruginosa during petroleum hydrocarbon degradation

Petroleum hydrocarbon contaminants, which are among the most serious pollutants in the petroleum industry, can be degraded sufficiently by Pseudomonas aeruginosa. However, temperature-induced stress will severely inhibit this biodegradation. In this study, the proteome of P. aeruginosa P6 at 25 °C, 43 °C and 37 °C was used to examine the impact of temperature on the molecular mechanism of biodegradation of petroleum hydrocarbon by P. aeruginosa P6. Differentially expressed proteins were identified by iTRAQ technology, and the functions of these proteins were identified by bioinformatic analysis. The impact of 25 °C and 43 °C on cellular processes has also been discussed. The results showed that the expression of proteins in chemotaxis toward petroleum hydrocarbons, terminal oxidation of aromatic rings in petroleum hydrocarbons and trans-membrane transport of fatty acids and nutriments were clearly inhibited under 25 °C condition. The expression of proteins in chemotaxis, emulsification, adhesion and terminal oxidation of petroleum hydrocarbons; catalysis of fatty alcohols and fatty aldehydes; trans-membrane transport of nutriments and β-oxidation were clearly inhibited under 43 °C condition.

Effects of phosphogypsum and medical stone on nitrogen transformation, nitrogen functional genes, and bacterial community during aerobic composting

This study explored the effects of adding phosphogypsum (PPG), medical stone (MS), and both (PPM) during composting on nitrogen transformation, nitrogen functional genes, the bacterial community, and their relationships with NH₃ and N₂O emissions. Adding MS and PPM reduced NH₃ emissions by 25.78-68.37% and N₂O emissions by 19.00-42.86%. PPG reduced NH₃ emissions by 59.74% but slightly increased N₂O emissions by 8.15%. MS was strongly correlated with the amoA-dominated nitrification process. PPG and PPM had strong correlations with nirS- and nirK-dominated, and nosZ-dominated denitrification processes, respectively. PPM promoted nitrification and denitrification processes more than PPG and MS. Different functional bacteria had key roles in nitrification and denitrification during different composting stages. Firmicutes probably contributed to the conversion and release of nitrogen in the thermophilic period, whereas Proteobacteria, Chloroflexi, Bacteroidetes, and other phyla might have played important roles in the cooling and maturation periods. PPM obtained the greatest reductions in NH₃ and N₂O release via the regulation of environmental variables, nitrogen functional genes, and the bacterial community. Overall, these results provide insights at a molecular level into the effects of PPG and MS on nitrogen transformation and NH₃ and N₂O emissions during composting.

Elucidating the role of earthworms in N2O emission and production pathway during vermicomposting of sewage sludge and rice straw

Vermicomposting is a sustainable option for the recycling of biodegradable organic waste. However, it also produces nitrous oxide (N₂O), which is a highly potent greenhouse gas. In this study, the N₂O stable isotope and functional genes for nitrogen cycling were determined to investigate the sources of N₂O during vermicomposting. The results showed that vermicomposting promoted the organic degradation and nitrogen nitrification, and the presence of earthworms increased the emission of N₂O during vermicomposting compared to that during the control treatment with no earthworms. The site preference analysis of N₂O stable isotope showed that both nitrification and denitrification were present during the early stages of vermicomposting, while nitrification was the dominant contributor to N₂O production in the later stages. Moreover, earthworms increased the gene copies of amoA, and stimulated the nitrifying bacteria, and hence, increased the N₂O emission via nitrification. In addition, the activity of earthworms reduced the gene number of nosZ during vermicomposting, while the denitrification was the main source of N₂O in the earthworm gut, as the conditions inside the gut inhibited nosZ. Overall, nitrification was the major pathway (55.8-88.7 %) for N₂O production, which was promoted by the introduction of earthworms through nitrification.

Production of volatile fatty acids and H2 for different ratio of inoculum to kitchen waste

The aim of this study was to evaluate the effect of different inoculum ratio on the dark fermentation of kitchen waste in terms of volatile fatty acids (VFAs) and H₂ production. The experiments were performed in batch bioreactors of effective volume 1 L without pH regulation. The ratio between the DS and KW was being increased from 0.11 to 0.51 on a volatile solids (VS) basis, while the initial content of KW was equal to 34.1 g VS/L. Increase of the DS/KW ratio from 0.11 to 0.28 resulted in the rise of VFAs and H₂ production. Further increase in the amount of added DS did not cause a significant change in the production of VFAs and H₂. In the bioreactor with the DS/KW ratio of 0.28, the production of VFAs and H₂ was equal to 16.0 g/L and 68.1 mL/g VS, respectively. Acetic and butyric acids were produced in the largest amount and their content, for DS/KW ratio of 0.28, were equal 37% and 43%, respectively. At the ratio of DS/KW above 0.4, the caproic acid content attained the level of 25%. Based on the DS and KW microbiological analysis, it was observed that dominant bacteria were Bacteroidetes, Firmicutes, Proteobacteria, Spirochaetes and WWE1 at the phylum level.

Investigation of nitrogen pollutants transformation and its pathways along the long-distance prechlorinated raw water distribution system

Understanding the transformation pattern of nitrogen (N) pollutants and its pathways in the prechlorinated raw water distribution system (PRWDS) is vital for controlling the stablitiy and safety of raw water qulity. This study investigated the N transformation, N functional genes and their correlations to find the N transformation pathways along the PRWDS. Results suggested that simultaneous nitrification, anaerobic ammonium oxidation and denitrification (SNAD) contribute to the N transformationin the PRWDS. Along the pipeline, anammox 16S rRNA (9.18 × 10⁷-8.41 × 10⁸ copies/g), limited by prechlorination, was the most abundant N functional genes and anammox process was the main pathway of ammonia nitrogen (NH₄⁺-N). The decreasing NH₄⁺-N was connected with Planctomycetes, Nitrospira and abundance of nxrA attributing to the joint effort of anammox and declined nitrification. The concentration of nitrate (NO₃^--N) increasing at first and then decreasing, was correlated positively with Sphingomonas. because of the declined nitritication and increased denitrification. Besides, the NO₃^--N→NO₂^--N process was considered to be primary NO₃^--N transformation pathways. Increases in the concentration of dissolved organic nitrogen (DON) and nitrite (NO₂^--N) observed in the PRWDS had positive correlation with relative abundance of Pseudomonas. We believe that prechlorination shaped the particular bacterialcharacteristics in biofilms and influenced the N transformation pathways indirectly, resulting in the varying N transformation rules in PRWDSs. Moreover, systematic and extended research is particularly vital for determining the effects of changes in source water quality and environmental conditions on bacterial community structure and N conversion along PRWDSs.

Humus formation driven by ammonia-oxidizing bacteria during mixed materials composting

The aim of this study was to identify the effects of ammonia-oxidizing bacteria (AOB) inoculation on humus formation. Both nitrogen conversion and humus formation were considered as the main processes, because NH₄⁺-N-like compounds not only substrates of nitrification, but also precursors of humus. During composting, the inoculation of AOB indeed increased humus concentration by fixing NH₃ emission as NH₄⁺-N, but it has also promoted nitrogen transformation. While the main reason was the changed bacteria community structure caused by inoculating AOB. Moreover, the relationship between bacteria and nitrogen transformation and humus formation has become closer. And bacteria were more likely to synthesize humus. Therefore, it is conjectured that AOB inoculation could not only provide NH₄⁺-N for humus formation, but also enhance the anabolism of microorganisms. This suppose has been confirmed by structural equation model in this study. Therefore, AOB inoculation has a driving effect on promoting humus formation.

Using the modified pine wood as a novel recyclable bulking agent for sewage sludge composting: Effect on nitrogen conversion and microbial community structures

This study investigated the effect of a recoverable sulphuric acid and sodium hydroxide-modified pinewood (MOP) as a bulking agent during sewage sludge and sawdust composting (MOPC), with a control experiment using unpretreated pinewood (UNP; UNPC) as the bulking agent. Results show that addition of MOP effectively promoted the degradation of organic matter during composting. The maximum temperature increased by 1.50 °C and the high temperature period (T > 50 °C) of composting was extended 4 days longer than the control experiment. Furthermore, MOP addition reduced the loss of nitrogen by 9.40%. High-throughput sequencing analysis showed that the bacterial communities in the UNPC and MOPC treatments were significantly different. Pseudoxanthomonas was the dominant bacteria during the thermophilic and cooling phases of the MOPC treatment. In addition, the recycling efficiency of the UNP and MOP was 99.18% and 99.37%, respectively.

Dynamic change of bacterial community during dairy manure composting process revealed by high-throughput sequencing and advanced bioinformatics tools

The aim of this work was to study the dynamic change in structure and potential function of bacterial community during dairy manure composting process using high-throughput sequencing and advanced bioinformatics tools. Alpha diversity of microbial community significantly decreased during the thermophilic phase and then recovered gradually. Beta diversity analysis showed unique community structures in different composting phases. Keystone microbes such as genus Corynebacterium, Bacillus, Luteimonas and Nonomuraea were identified for different composting phases. Six functional modules were identified for bacterial community during the composting process using co-occurrence analysis. These modules were significantly associated with temperature, pH, degradation of organic matter and maturation of compost. Predicted metagenomics analysis showed that the relative abundance of amino acid, lipid, energy and xenobiotics metabolism increased during the composting process. These results provide valuable insights into the microbiota during dairy manure composting and how the structures and metabolic functions changed in response to composting phases.

Stimulating methane production from microalgae by alkaline pretreatment and co-digestion with sludge

Methane production through anaerobic digestion (AD) is a solution of energy recovery from microalgae, but some features of microalgae limit the efficiency of AD. In this study, alkaline pretreatment and co-digestion with sludge were both applied to enhance the methane production from microalgae in batch experiments. The results showed that alkaline pretreatment increased the disintegration degree of microalgae from 20% to 34% at maximum after 12-h treatment, but the specific methane production (SMP) only increased from 279 to 298 ml/g volatile solids (VS). Co-digestion with sludge stimulated methane production, and the best synergy with an SMP of 343 ml/g VS occurred when the ratio of microalgae to sludge reached 2:1 based on their VS. The yield was 12.4% and 20.0% higher than those from mono digestion of microalgae and sludge, respectively, and the synergy was evaluated at 14.8%. Therefore, co-digestion is a better choice for improving methane production from microalgae.

Insight into the microbiology of nitrogen cycle in the dairy manure composting process revealed by combining high-throughput sequencing and quantitative PCR

Nitrogen cycling during composting process is not yet fully understood. This study explored the key genes involved in nitrogen cycling during dairy manure composting process using high-throughput sequencing and quantitative PCR technologies. Results showed that nitrogen fixation occurred mainly during the thermophilic and cooling phases, and significantly enhanced the nitrogen content of compost. Thermoclostridium stercorarium was the main diazotroph. Ammonia oxidation occurred during the maturation phase and Nitrosomonas sp. was the most abundant ammonia oxidizing bacteria. Denitrification contributed to the greatest nitrogen loss during the composting process. The nirK community was dominated by Luteimonas sp. and Achromobacter sp., while the nirS community was dominated by Alcaligenes faecalis and Pseudomonas stutzeri. The nosZ community varied in a succession of Halomonas ilicicola, Pseudomonas flexibili and Labrenzia alba dominated communities according to different composting phases. Based on these results, nitrogen cycling models for different phases of the dairy manure composting process were established.

Enzymatic activities triggered by the succession of microbiota steered fiber degradation and humification during co-composting of chicken manure and rice husk

The carbon to nitrogen ratio (C/N) is well known for its importance in the composting process, however the fiber degradation and humification associated with enzymatic activity and microbial variation derived from different C/N ratios are poorly studied. Here, we designed two treatments of chicken manure with 15% (initial C/N ratio 9.61) and 50% (initial C/N ratio 17.3) rice husk to adjust the moisture of mixtures for turning feasibly by towable fertilizer turner in industrial level. Compared to the C/N ratio 9.61, the suitable C/N ratio of 17.3 significantly enhanced the composting efficiency and the final germination index (23.7%). Moreover, the suitable C/N ratio increased the relative abundance of Bacilli, which played an important role during the mesophilic and thermophilic phases. Bacilli abundance was related to cellulose and β-glycosidase activities, thus improved fiber degradation and humification. This study not only seeks a swift method in industrial level to process chicken manure but also provides insight into the enzymatic activity of microbial community related to high-efficient composting.

Minimizing ammonia emissions from dairy manure composting by biofiltration using a pre-composted material as the packing media

Compost-based biofiltration is a method widely used to mitigate ammonia emissions during composting. To improve the efficiency of a composting-biofiltration system, it is necessary to determine the most effective degree of composting at which to process the packing media used in the biofiltration system. In this study, materials pre-composted for 20 and 30 d (C20 and C30, respectively), and mature compost (CM) that had been treated for 60 d, were applied as biofilter media to remove ammonia from dairy manure composting exhaust gases. A comparison of the results revealed that the C30 biofilter not only completely removed ammonia, but also produced the least nitrogen loss (1.84%). The C20 biofilter exhibited an inferior performance, indicating that enough pre-composted time is necessary for material used as the packing media. Though the CM biofilter displayed good performance with regard to ammonia removal (97.8%), it had a high nitrogen loss (6.46%). A spearman rank correlation matrix revealed that the abundance of nitrogen cycle genes including amoA, nosZ, nirK, and nirS, had a strong correlation with the physicochemical properties such as nitrate content, carbon source, moisture content, and pH of the biofilter media. C30 provided advantageous conditions and contained a relatively high abundance of nitrifiers and the lowest abundance of denitrifiers. As a result, C30 rather than CM was a more appropriate biofilter media for ammonia removal. Moreover, the occurrence of biological nitrification during the dairy manure composting process indicates the effectiveness of a material for use as biofilter media.

Evidence for positive response of soil bacterial community structure and functions to biosynthesized silver nanoparticles: An approach to conquer nanotoxicity?

The environmental impacts of biosynthesized nanoparticles on the soil bacterial community assemblage and functions are not sufficiently understood. Given the broad application of silver nanoparticles (AgNPs), the present study aims to reveal the effects of biosynthesized AgNPs (~12 nm) on the soil bacterial community structure and functions. Specifically, we used a quantitative real-time PCR (qPCR) approach to quantify the relative abundance of bacterial taxon/group and representative functional genes (AOA, AOB, NirK, NirS, NosZ, and PhoD). Results showed high relative abundance of Actinobacteria (1.53 × 10⁷, p = 0.000) followed by Alphaproteobacteria (1.18 × 10⁶, p = 0.000) and Betaproteobacteria (2.01 × 10⁶, p = 0.000) in the soil exposed to biosynthesized AgNPs (100 mg/kg soil) after 30 days of treatment. Bacteroidetes group was observed to be negatively affected by AgNPs treatment. In the case of functional genes abundance, more pronounced impact was observed after 30 days of application. The biosynthesized AgNPs treatment accounted for significant increase in the relative abundance of all targeted functional genes except NirS. We conclude that the biosynthesized AgNPs did not cause toxic effects on nitrifiers, denitrifiers and organic phosphorus metabolizing bacterial community. While AgNO₃ caused higher toxicity in the soil bacterial community structure and function. Based on our findings, we propose two key research questions for further studies; (i) is there any adaptation strategy or silver resistance embraced by the soil microbial community? and (ii) are biosynthesized nanoparticles environmentally safe and do not pose any risk to the soil microbial community? There is a necessity to address these questions to predict the environmental safety of biosynthesized AgNPs and to apply appropriate soil management policies to avoid nanotoxicity. Since this study provides preliminary evidence for the positive response of the soil bacterial community structure and functions to biosynthesized AgNPs, additional investigations under different soil conditions with varying soil physico-chemical properties are required to authenticate their environmental impact.

The changes in functional marker genes associated with nitrogen biological transformation during organic-inorganic co-composting

In this article, the changes in the functional marker genes associated with nitrogen biological transformation during the organic-inorganic co-composting process with adding biochar or not were studied. Results showed that the addition of biochar increased the abundance of ureC, AOA amoA and AOB amoA gene while decreased the abundance of nirK gene. The addition of 10% biochar by weight ratio was better for the optimization of nitrogen biological transformation process. The correlation analysis showed that the ureC gene was highly correlated with NH₄⁺-N concentration while the AOA amoA and AOB amoA genes were moderately correlated with NH₄⁺-N concentration. Similarly, the nirK gene was moderately correlated with NO₃^--N concentration. This work would contribute to understanding the mechanisms underlying in the nitrogen bio-transformation further at the molecular level during organic-inorganic co-composting.

Changes in structure and function of bacterial and fungal communities in open composting of Chinese herb residues

In this study, dynamic changes in bacterial and fungal communities, metabolic characteristics, and trophic modes in Chinese herb residues open composting for 30 days were analyzed by using high-throughput sequencing, PICRUSt, and FUNGuild, respectively. Bacillaceae and Basidiomycota predominated at the early composting stage, while Proteobacteria and Ascomycota became the dominant phyla during the active phase. Aerobic composting had a significant effect on bacterial metabolic characteristics and fungal trophic modes over the composting time. The function of the bacterial communities changed from environmental information processing to metabolism. Fungal communities changed as well, with the pathogenic fungi decreasing and wood saprotrophs increasing. These results indicated that open composting of Chinese herb residues not only influenced microbial community structure but also changed metabolic characteristics and trophic modes, which became the internal dynamics of composting.

Genetic associations as indices for assessing nitrogen transformation processes in co-composting of cattle manure and rice straw

In this study, mechanism of nitrogen transformation was investigated in terms of genetic associations (nitrogen-related gene groups) in co-composting of cattle manure and rice straw. Mutual validation among KEGG, Pearson correlation, stepwise regression, and Path analyses indicated that the functional genes synergistically affected on nitrogen transformation in composting process. NxrA/qnorB (0.9419 ± 0.0334) and (amoA + anammox)/Bacteria (0.7187 ± 0.0334) were the key functional gene groups mediating NH₄⁺-N transformation. AmoA/(narG + napA) (-0.8400 ± 0.0129), amoA/bacteria (0.8692 ± 0.0273), and (nirK + nirS)/nosZ (1.1652 ± 0.0089) determined NO₃^--N, NO₂^--N and N₂O transformation, respectively. AmoA/(napA + narG) mediated both NO₃^--N and NO₂^--N transformation. AmoA/anammox (-0.7172 ± 0.0591) and (nirK + nirS)/nosZ (-0.6626 ± 0.0825) served as predominant factors for total nitrogen removal. These results provided a molecular-level insight that nitrification, anaerobic ammonia oxidation and denitrification (SNAD) might simultaneously contribute to nitrogen transformation during composting, rather than sequentially.

Evolutions of different microbial populations and the relationships with matrix properties during agricultural waste composting with amendment of iron (hydr)oxide nanoparticles

This study investigated the evolutions of different microbial populations and multivariate relationships between their abundances and environmental variables during composting with amendment of Fe (hydr)oxide nanoparticles. Piles treated with nanohematite and nanomagnetite were denoted as T-nanohematite and T-nanomagnetite, and another one was T-control. It was found that nanohematite more effectively increased bacteria and fungi abundances with 1.24∼1.58 times average value of T-control, while nanomagnetite was more useful to actinomycetes. As the most significant variable, the total effect of temperature in T-control and T-nanomagnetite was increased to 0.87 and 0.92, respectively, because both the direct and indirect effects were positive, while it in T-nanohematite was reduced to 0.18 by the negative indirect effect. Partial redundancy analysis suggested that each microbial abundance shared different relationships with composting parameters. Overall, actinomycetes was more sensitive to changes of composting parameters than bacteria and fungi.

Influence of FeONPs amendment on nitrogen conservation and microbial community succession during composting of agricultural waste: Relative contributions of ammonia-oxidizing bacteria and archaea to nitrogen conservation

Composting amended with iron oxide nanoparticles (FeONPs, α-Fe₂O₃ and Fe₃O₄ NPs) were conducted to study the impacts of FeONPs on nitrogen conservation and microbial community. It was found that amendment of FeONPs, especially α-Fe₂O₃ NPs, reduced total nitrogen (TN) loss, and reserved more NH₄⁺-N and mineral N. Pearson correlation analysis revealed that decrease of ammonia-oxidizing bacteria (AOB) in FeONPs treatments played more important role than ammonia-oxidizing archaea (AOA) in reserving more NH₄⁺-N and mineral N, and reducing TN loss. Bacterial community composition at phylum level did not shift with addition of FeONPs. Firmicutes, Actinobacteria, and Proteobacteria were the three most dominant phyla in all treatments. Overall, this study provides a method to reduce TN loss and improve mineral N reservation during composting, and gives a deep insight into the role of AOB and AOA in nitrogen transformation.

Effects of earthworms on nitrogen transformation and the correspond genes (amoA and nirS) in vermicomposting of sewage sludge and rice straw

The effects of earthworms on nitrogen transformation and the responsible functional genes during disposal of sewage sludge and rice straw were investigated in this study. Vermicomposting resulted in the lower pH and total organic carbon (TOC) compared to the control treatment without earthworms. Moreover, the presence of earthworms could promote the nitrogen mineralization and nitrification process in vermicomposting. Earthworms increased the activity of ammonia monooxygenase and abundance of amoA-nitrifier and reduced its diversity, whereas they reduced the density of nirS-denitrifying bacteria but enhanced its diversity. Nitrosospira was the dominant amoA-nitrifier and earthworms stimulated its growth in the vermicomposting. The presence of earthworms could also affect the community composition of nirS-denitrifying bacteria despite most of the nirS-denitrifier was not be classified at the genus level. In conclusion, the presence of earthworms had significant influence on the diversity and abundances of amoA and nirS genes and affect the nitrogen bio-transformation in vermicomposting.