Dissipation of polycyclic aromatic hydrocarbons (PAHs) in the rhizosphere: synthesis through meta-analysis

Response and adaptation of rhizosphere microbiome to organic pollutants with enriching pollutant-degraders and genes for bioremediation: A critical review

Phytoremediation largely involves microbial degradation of organic pollutants in rhizosphere for removing organic pollutants like polycyclic aromatic hydrocarbons, phthalates and polychlorinated biphenyls. Microbial community in rhizosphere experiences complex processes of response-adaptation-feedback up on exposure to organic pollutants. This review summarizes recent research on the response and adaptation of rhizosphere microbial community to the stress of organic pollutants, and discusses the enrichment of the pollutant-degrading microbial community and genes in the rhizosphere for promoting bioremediation. Soil pollution by organic contaminants often reduces the diversity of rhizosphere microbial community, and changes its functions. Responses vary among rhizosphere microbiomes up on different classes of organic pollutants (including co-contamination with heavy metals), plant species, root-associated niches (e.g., rhizosphere, rhizoplane and endosphere), geographical location and soil properties. Soil pollution can deplete some sensitive microbial taxa and enrich some tolerant microbial taxa in rhizosphere. Furthermore, rhizosphere enriches pollutant-degrading microbial community and functional genes including different gene clusters responsible for biodegradation of organic pollutants and their intermediates, which improve the adaptation of microbiome and enhance the remediation efficiency of the polluted soil. The knowledge gaps and future research challenges are highlighted on rhizosphere microbiome in response-adaptation-feedback processes to organic pollution and rhizoremediation. This review will hopefully update understanding on response-adaptation-feedback processes of rhizosphere microbiomes and rhizoremediation for the soil with organic pollutants.

Impacts of rhizoremediation and biostimulation on soil microbial community, for enhanced degradation of petroleum hydrocarbons in crude oil-contaminated agricultural soils

Hydrocarbonoclastic bacterial strains were isolated from rhizosphere of plants growing in crude oil-contaminated sites of Assam, India. These bacteria showed plant growth-promoting attributes, even when exposed to crude oil. Two independent pot trials were conducted to test the rhizodegradation ability of the bacterial consortium in combination of plants Azadirchta indica or Delonix regia in crude oil-contaminated soil. Field experiments were conducted at two crude oil-contaminated agricultural field at Assam (India), where plants (A. indica or D. regia) were grown with the selected bacterial consortium consisting of five hydrocarbonoclastic bacterial isolates (Gordonia amicalis BB-DAC, Pseudomonas aeruginosa BB-BE3, P. citronellolis BB-NA1, Rhodococcus ruber BB-VND, and Ochrobactrum anthropi BB-NM2), and NPK was added to the soil for biostimulation. The bacterial consortium-NPK biostimulation led to change in rhizosphere microbiome with enhanced degradation of petroleum hydrocarbons (PHs) in soils contaminated with crude oil. After 120 days of planting A. indica + consortium + NPK treatment, degradation of PHs was found to be up to 67%, which was 55% with D. regia with the same treatment. Significant changes in the activities of plant and soil enzymes were also noted. The shift is bacterial community was also apparent as with A. indica, the relative abundance of Proteobacteria, Actinobacteria, and Acidobacteria increased by 35.35%, 26.59%, and 20.98%, respectively. In the case of D. regia, the relative abundance of Proteobacteria, Actinobacteria, and Acidobacteria were increased by 39.28%, 35.79%, and 9.60%, respectively. The predicted gene functions shifted in favor of the breakdown of xenobiotic compounds. This study suggests that a combination of plant-bacterial consortium and NPK biostimulation could be a productive approach to bioengineering the rhizosphere microbiome for the purpose of commercial bioremediation of crude oil-contaminated sites, which is a major environmental issue faced globally.

Soil microplastic characteristics and the effects on soil properties and biota: A systematic review and meta-analysis

The soil environment serves as an assembling area for microplastics, and is an important secondary source of microplastics in other environmental media. Recently, soil microplastics have been extensively studied; however, high variability is observed among the research results owing to different soil properties, and the complexity of soil microplastic composition. The present study amassed the findings of 2886 experimental groups, across 38 studies from 2016 to 2022, and used meta-analysis to quantitatively analyze the differences in the effects of microplastic exposure on soil physicochemical properties and biota. The results showed that among the existing soil microplastic research, agricultural soils maintained a higher environmental exposure distribution than other environments. Microplastic fibers and fragments were the predominant shapes, indicating that the extensive use of agricultural films are the primary influencing factor of soil microplastic pollution at present. The results of the meta-analysis found that microplastic exposure had a significant negative effect on soil bulk density (lnRR = -0.04) and aggregate stability (lnRR = -0.085), indicating that microplastics may damage the integrity of soil structure or damage the soil surface. The significant changes in plant root biomass and soil phosphatase further signified the potential impact of microplastics on soil nutrient and geochemical element cycling. We further constructed species sensitivity distribution curves, revealing that invertebrates had a higher species sensitivity to microplastics, as they can pass through the gut wall of soil nematodes, causing oxidative stress and affecting gene expression. In general, soil is an interconnected complex, and microplastic exposure can directly or indirectly interact with environmental chemical processes in the soil environment, potentially harming the soil ecosystem; however, current research remains insufficient with respect to breadth and depth in terms of the comprehensive "source-sink" mechanism of soil microplastics, the hazard of exposure, and the overall toxic effects.

Strategies to Control Human Health Risks Arising from Antibiotics in the Environment: Molecular Modification of QNs for Enhanced Plant-Microbial Synergistic Degradation

In the present work, a comprehensive screening and evaluation system was established to improve the plant-microbial synergistic degradation effects of QNs. The study included the construction of a 3D-QSAR model, the molecular modification, environmental friendliness and functional evaluation of drugs, degradation pathway simulation, and human health risk assessment. Molecular dynamics was applied to quantify the binding capacity of QNs toward the plant degradation enzyme (peroxidase) and microbial degradation enzymes (manganese peroxidase, lignin peroxidase, and laccase). The fuzzy comprehensive evaluation method was used in combination with the weighted average method for normalization and assigning equal weights to the plant and microbial degradation effect values of the QNs. Considering the synergistic degradation effect value as the dependent variable and the molecular information of the QNs as the independent variable, a 3D-QSAR model was constructed for the plant-microbial synergistic degradation effect of QNs. The constructed model was then employed to conduct the molecular modification, environmental friendliness and functional evaluation, degradation pathway simulation, and human health risk assessment of transformation products using pharmacokinetics and toxicokinetics. The results revealed that the synergistic degradation effect 3D-QSAR (CoMSIA) model exhibited good internal and external prediction ability, fitting ability, stability, and no overfitting phenomenon. Norfloxacin (NOR) was used as the target molecule in the molecular modification. A total of 35 NOR derivatives with enhanced plant-microbial synergistic degradation effect (1.32-21.51%) were designed by introducing small-volume, strongly electronegative, and hydrophobic hydrogen bond receptor groups into the active group of the norfloxacin structure. The environment-friendliness and the functionality of NOR were evaluated prior to and after the modification, which revealed seven environment-friendly FQs derivatives exhibiting moderate improvement in stability and bactericidal efficacy. The simulation of the NOR plant and microbial degradation pathways prior to and after the modification and the calculation of the reaction energy barrier revealed Pathway A (D-17 to D-17-2) and Pathway B (D-17 to D-17-4) as the most prone degradation pathways in plants and Pathway A (D-17 to D-17-1) and Pathway B (D-17 to D-17-4) as the most prone degradation pathways in microorganisms. This demonstrated that the degradation of the modified NOR derivatives was significantly enhanced, with the hydroxylation and piperazine ring substitution reaction playing an important role in the degradation process. Finally, the parameters, including hepatotoxicity, mutagenicity, and rodent carcinogenicity, among others, predicted using the pharmacokinetics and toxicokinetics analyses revealed a significant reduction in the human health risk associated with the modified NOR, along with a considerable reduction in the toxicity of its transformation products, implying that the human health risk associated with the transformation products was reduced remarkably. The present study provides a theoretical basis for novel ideas and evaluation programs for improving the plant-microbial synergistic degradation of the QNs antibiotics for source control and drug design, thereby reducing the residues of these antibiotics and the associated hazard in the complex plant-soil environment, ultimately decreasing the potential risks to human health.

Transcriptomic and metabolomic insights into the adaptive response of Salix viminalis to phenanthrene

Polycyclic aromatic hydrocarbons (PAHs) are widespread, persistent environmental pollutants. They exert toxic effects at different developmental stages of plants. Plant defense mechanisms against PAHs are poorly understood. To this end, transcriptomics and widely targeted metabolomic sequencing were used to study the changes in gene expression and metabolites that occur in the roots of Salix viminalis subjected to phenanthrene stress. Significant variations in genes and metabolites were observed between treatment groups and the control group. Thirteen amino acids and key genes involved in their biosynthesis were upregulated exposed to phenanthrene. Cysteine biosynthesis was upregulated. Sucrose, inositol galactoside, and mellidiose were the main carbohydrates that were largely accumulated. Glutathione biosynthesis was enhanced in order to scavenge reactive oxygen species and detoxify the phenanthrene. Glucosinolate and flavonoid biosynthesis were upregulated. The production of pinocembrin, apigenin, and epigallocatechin increased, which may play a role in antioxidation to resist phenanthrene stress. In addition, levels of six amino acids and N,N'-(p-coumaroyl)-cinnamoyl-caffeoyl-spermidine were significantly increased, which may have helped protect the plant against phenanthrene stress. These results demonstrated that S. viminalis had a positive defense strategy in response to phenanthrene challenge. Subsequent defense-related reactions may have also occurred within 24 h of phenanthrene exposure. The findings of the present study would be useful in elucidating the molecular mechanisms regulating plant responses to PAH challenges and would help guide crop and plant breeders in enhancing PAH resistance.

Iron Plaque Prevents Partitioning of Polycyclic Aromatic Hydrocarbons on Rice (Oryza sativa) Root Surface

Adsorption of polycyclic aromatic hydrocarbons (PAHs) on root surfaces has essential impacts on PAH phytoremediation. An Fe plaque is commonly formed on the root surface of aquatic plants. Therefore, it is worth investigating the impact of the Fe plaque on PAH adsorption on rice root surfaces. Using Bayesian linear water-methanol cosolvent models, we estimated accurate water-biosorbent partition coefficient values for phenanthrene, pyrene, and benzo[a]pyrene between water and rice root biosorbent fractions, including rice root materials with Fe plaque, removed Fe plaque, and removed Fe plaque and lipids. Our results showed that Fe plaque inhibited the adsorption of PAHs on rice root surface; the inhibition impacts increased with hydrophobicity of PAHs. This result highlights the need for considering the impact of Fe plaque on PAH adsorption during phytoremediation. Integr Environ Assess Manag 2020;16:392-399. © 2020 SETAC.

The effect of different levels of leachate on phytoremediation of pyrene-contaminated soil and simultaneous extraction of lead and cadmium

Pyrene is one of the 16 group combinations of polyaromatic hydrocarbons, which are known as primary pollutants in the U.S. Environmental Protection Agency (USEPA) list. This study aimed to investigate the cross effect of different levels of landfill leachate on phytoremediation of pyrene-contaminated soil using the sorghum bicolor plant. The study parameters included the presence or absence of the plant, different concentrations of pyrene (150, 300, 500, 750, and 1000 mg kg^-1), time (30, 60, and 90 days), and different levels of irrigation with leachate (0, 30, 50, 70, and 100%). Soil pyrene was measured every 30 days, and heavy metals (lead and cadmium) added to the soil by irrigation with leachate were measured in the soil and the plant at the end of 90 days. According to the results, pyrene removal efficiency after 90 days was 96% in irrigation treatments with 30% leachate in the presence of the plant and 67% in irrigation treatments with tap water in the presence of the plant. In addition, 95% of lead and 49% of cadmium added to the soil by irrigation with 30% leachate were extracted from the soil by the sorghum bicolor. According to the results, by increasing nutrients and number of soil bacteria during the cross treatment, landfill leachate increased the pyrene removal efficiency significantly during phytoremediation (p < 0.006) and the sorghum bicolor plant extracted the lead and cadmium of the leachate. In non-planting treatments, although adding high levels of leachate to the soil significantly improved the pyrene removal, it caused the levels of heavy metals, such as lead and cadmium, to exceed the allowable limit (p < 0.001).

Hydroponic approach to assess rhizodegradation by sudangrass (Sorghum x drummondii) reveals pH- and plant age-dependent variability in bacterial degradation of polycyclic aromatic hydrocarbons (PAHs)

Rhizodegradation of polycyclic aromatic hydrocarbons (PAHs) is a product of complex interactions between plant and bacteria. In this study, hydroponic culture of sudangrass was established in order to investigate the effects of the plant on PAHs degradation and vice versa through changes in rhizosphere bacterial community. Results showed a plant-induced variability in PAHs degradation dependent on a characteristic shift in bacterial community, with pH and plant age as driving factors. Moreover, bacterial communities with high diversity seemed to abate the phytotoxic effects of PAHs degradation as observed in the plant's gross health. Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and next-generation sequencing revealed that regardless of plant age and culture conditions, the increase or decrease of Sphingobium sp. could dictate the PAHs degradation potential of the bacterial consortium. Overall, this study utilized hydroponic culture of sudangrass to show that plant even of same species can suppress, support, or enhance PAHs degradation of bacteria depending on specific factors.

Anaerobic Microbial Degradation of Polycyclic Aromatic Hydrocarbons: A Comprehensive Review

Polycyclic aromatic hydrocarbons (PAHs) are a class of hazardous organic contaminants that are widely distributed in nature, and many of them are potentially toxic to humans and other living organisms. Biodegradation is the major route of detoxification and removal of PAHs from the environment. Aerobic biodegradation of PAHs has been the subject of extensive research; however, reports on anaerobic biodegradation of PAHs are so far limited. Microbial degradation of PAHs under anaerobic conditions is difficult because of the slow growth rate of anaerobes and low energy yield in the metabolic processes. Despite the limitations, some anaerobic bacteria degrade PAHs under nitrate-reducing, sulfate-reducing, iron-reducing, and methanogenic conditions. Anaerobic biodegradation, though relatively slow, is a significant process of natural attenuation of PAHs from the impacted anoxic environments such as sediments, subsurface soils, and aquifers. This review is intended to provide comprehensive details on microbial degradation of PAHs under various reducing conditions, to describe the degradation mechanisms, and to identify the areas that should receive due attention in further investigations.

Enhanced degradation of polycyclic aromatic hydrocarbons (PAHs) in the rhizosphere of sudangrass (Sorghum × drummondii)

Grasses are advantageous in the removal of polycyclic aromatic hydrocarbons (PAHs) in soil because of their fibrous root, high tolerance to environmental stress, and low nutritional requirements. In this study, a pot experiment was conducted to test the ability of four grasses to remove PAHs in the soil, and to investigate the corresponding bacterial community shift in the rhizosphere of each. Sudangrass achieved the maximum removal of PAHs at 98% dissipation rate after 20 days. Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and next-generation sequencing revealed that sudangrass specially enriched the growth of a known PAHs degrader, Sphingomonadales, regardless of the presence or absence of PAHs in the soil. Moreover, the gene copy numbers of PAHs catabolic genes, PAH-RHDα and nidA, as measured by real time-PCR (RT-PCR) were highest in the soil planted with sudangrass. Overall, this study suggested that sudangrass further enhanced the dissipation of PAHs by enriching Sphingomonadales in its rhizosphere.

Hormesis under oil-induced stress in Leersia hexandra Sw. used as phytoremediator in clay soils of the Mexican humid tropic

The oil industry has inherent risks of spills or leaks due to natural or anthropogenic causes, which cause alterations in the soil and damage to the plant. An experiment was carried to investigate the effect of oil on the growth, biomass production, biosynthesis of crude protein of Leersia hexandra grass and the remove of oil from the soil. The results showed different responses by L. hexandra depending on the age, low concentrations of oil induced a significant increase in stolon length, in relative growth rate, in dry matter production and in the biosynthesis of crude protein. The same parameters decreased at high concentrations of oil. However, at the end of the evaluation period of 180 days, high concentrations of oil induced a significant increase in the number of young plants and secondary roots, the terminal third of the main root and root dry matter. The dose response curves had the shape of an inverted U, showing that at days 15, 45, 90 and 180, in stolon length, aerial dry matter production, crude protein (day 90) and young plants (days 45 and 90) exhibited a typical biphasic response. The increase in oil concentration correlated with increases in young plants, number of secondary roots, number of roots at the middle, terminal third and root dry matter. After 180 days exposure the rhizosphere of L. hexandra a total oil removal of oil of 76.7 ± 4 was achieved; 61.7, 51, 44.6, 38 and 52% in soils that initially contained 7.9, 54, 102, 126, 145 and 238 g oil.

Bacteria-assisted removal of fluoroquinolones from wheat rhizospheres in an agricultural soil

Extensive fluoroquinolone antibiotics use results in their widespread occurrence in various environments including soil, which threatens the soil ecology and public health. The fate of fluoroquinolones in agricultural soil and the efficacy of enhanced degradation in the presence of an agricultural crops and antibiotic degrading bacteria could be better understood. The current study examined ciprofloxacin (CIP), enrofloxacin (ENR), and levofloxacin (LEV) biodegradation in a Maury Silt Loam soil in greenhouse conditions by bacterial-assisted removal of individual and mixed antibiotics in wheat rhizospheres. Fluoroquinolones were added at rates of 5, 50, and 100 mg kg^-1. Three bacterial isolates were applied at 10⁶ CFU g^-1 soil individually and in consortium. Antibiotics appeared in wheat tissue, with more accumulation in roots than shoots. Low recoveries (<50%) of CIP, ENR, and LEV were observed at all levels and treatments in a bacteria and wheat-free control compared to the initial concentrations applied Contaminated soil with wheat had greater antibiotic recovery than the wheat-free control. Antibiotic recovery with bacterial inoculum was less than that of the indigenous bacteria. The least antibiotic recovery occurred with wheat and bacterial inoculum together. At concentrations of 5 and 50 mg kg^-1, but not at 100 mg kg^-1, CIP, ENR, and LEV were below detection limits in soil after 30 days through the combination of wheat and bacteria compared to the control. This synergistic removal of the fluoroquinolone antibiotics is proposed to be due to enhanced antibiotic bioavailability, which suggests it as an environment-friendly approach to biodegradation.

Enhanced biodegradation of atrazine by Arthrobacter sp. DNS10 during co-culture with a phosphorus solubilizing bacteria: Enterobacter sp. P1

The interaction between pure culture microorganisms has been evaluated allowing for the enhanced biodegradation of various kinds of pollutants. Arthrobacter sp. DNS10 previously enriched in an atrazine-containing soil was capable of utilizing atrazine as the sole nitrogen source for growth, and Enterobacter sp. P1 is a phosphorus-solubilizing bacterium that releases various kinds of organic acids but lacks the ability to degrade atrazine. Whether strain P1 could enhance atrazine biodegradation by the degrader strain DNS10 was investigated in this experiment. Gas chromatography and high-performance liquid chromatography results showed that co-culture of both strains degraded 99.18 ± 1.00% of the atrazine (initial concentration was 100 mg L^-1), while the single strain DNS10 only degraded 38.57 ± 7.39% after a 48 h culture, and the resulting concentration of the atrazine final metabolite cyanuric acid were 63.91 ± 3.34 mg L^-1 and 26.60 ± 3.87 mg L^-1, respectively. In addition, the expression of the atrazine degradation-related genes trzN, atzB and atzC in co-culture treatments was 6.61, 1.81 and 3.09 times that of the single strain DNS10 culture treatment. A substrates utilization test showed that the atrazine-degrading metabolites ethylamine and isopropylamine could serve as the nitrogen source to support strain P1 growth, although strain P1 cannot degrade atrazine or utilize atrazine for growth. Furthermore, the pH of the medium was significantly decreased when strain P1 utilized ethylamine and isopropylamine as the nitrogen source for growth. The results suggest that nondegrader strain P1 could promote the atrazine biodegradation when co-cultured with strain DNS10. This phenomenon is due to metabolite exchange between the two strains. Culturing these two strains together is a new biostimulation strategy to enhance the biodegradation of atrazine by culturing these two strains together.

Responses of soil microbial community and enzymes during plant-assisted biodegradation of di-(2-ethylhexyl) phthalate and pyrene

A pot experiment was conducted to explore the plant-assisted degradation efficiency of di-(2-ethylhexyl) phthalate (DEHP) and pyrene. Three plant species: Ceylon spinach, sunflower, and leaf mustard were cultivated in co-contaminated soils under three contamination levels: control (T0), 20 mg kg^-1 (T20), and 50 mg kg^-1 (T50). The results showed that a higher DEHP and pyrene degradation efficiency was observed evidently in planted cases, increasing from 42 to 53-59% (T0), 61 to 65-76% (T20) and 52 to 68-78% (T50) for DEHP, and from 22 to 30-49% (T0), 58 to 62-72% (T20), and 54 to 57-70% (T50) for pyrene. Under T20 contamination level, soil phospholipid fatty-acid analysis depicted the increased microbial biomass in rhizosphere, especially the arbuscular mycorrhizal fungus that is effective for the degradation of organic pollutants. The study also revealed that the activities of dehydrogenase, acid phosphomonoesterase, urease, and phenol oxidase negatively correlated with pollutant concentration. In general, the removal rate of DEHP and pyrene was highest in the soil planted with leaf mustard for each contamination level considered. For soils at T20 level, sunflower and leaf mustard appeared as interesting phytoremediation plants due to the improved removal rates of organic pollutants and the soil microbial activity.

The responding and ecological contribution of biofilm-leaves of submerged macrophytes on phenanthrene dissipation in sediments

The bacterial communities and ecological contribution of biofilm-leaves of the Vallisneria natans (VN), Hydrilla verticillata (HV) and artificial plant (AP) settled in sediments with different polluted levels of phenanthrene were investigated by high-throughput sequencing in different growth periods. There was no significant difference among the detected Alpha diversity indices based on three classification, attached surface, spiking concentration and incubation time. While Beta diversity analysis assessed by PCoA on operational taxonomic units (OTU) indicated that bacterial community structures were significantly influenced in order of attached surface > incubation time > spiking concentration of phenanthrene in sediment. Moreover, the results of hierarchical dendrograms and heat maps at genus level were consistent with PCoA analysis. We speculated that the weak influence of phenanthrene spiking concentration in sediment might be related to lower concentration and smaller concentration gradient of phenanthrene in leaves. Meanwhile, difference analysis suggested that attached surface was inclined to influence the rare genera up to significant level than incubation time. In general, the results proved that phenanthrene concentrations, submerged macrophytes categories and incubation time did influence the bacterial community of biofilm-leaves. In turn, results also showed a non-negligible ecological contribution of biofilm-leaves in dissipating the phenanthrene in sediments (>13.2%-17.1%) in contrast with rhizosphere remediation (2.5%-3.2% for HV and 9.9%-10.6% for VN).

Effect of plant growth promoting bacterium; Pseudomonas putida UW4 inoculation on phytoremediation efficacy of monoculture and mixed culture of selected plant species for PAH and lead spiked soils

Plant growth promoting bacteria (PGPB) enhanced phytoremediation (PEP) is an attractive remedial strategy for the remediation of polycyclic aromatic hydrocarbon (PAH) and heavy metal (HM) contaminated sites. The effect of PGPB; Pseudomonas putida UW4 inoculation on the phytoremediation efficiency of Medicago sativa, Festuca arundinacea, Lolium perenne, and mixed plants (L. perenne and F. arundinacea) was assessed. This involved two contaminant treatments; "PAH" (phenanthrene; 300 mg·kg^-1, fluoranthene; 200 mg·kg^-1, and benzo[a]pyrene; 5 mg·kg^-1) and "PAH + HM" ('PAH' treatments +100 mg of Pb/kg). PGPB inoculation significantly enhanced root biomass yield of F. arundinacea in PAH treatment, and the mixed plant shoot biomass and L. perenne root biomass yields of the PAH + HM treatment. PGPB significantly enhanced dissipation of phenanthrene and fluoranthene for M. sativa-PAH + PGPB treatment and fluoranthene for F. arundinacea-PAH + HM + PGPB treatment. In others, PGPB inoculation either had no impact or inhibited PAH dissipation. PAH dissipation for the single and mixed plant treatments with PGPB inoculation were not different. The efficiency of PEP is dependent on different factors such as PGPB inoculum biomass, plant species, plant-microbe specificity and type of contaminants. Exploiting PEP technology would require proper understanding of plant tolerance and growth promoting mechanisms, and rhizosphere activities.

Metabolomics reveals defensive mechanisms adapted by maize on exposure to high molecular weight polycyclic aromatic hydrocarbons

Polycyclic aromatic hydrocarbons are an important group of persistent organic pollutants. Using plants to remediate PAHs has been recognized as a cost-effective and environmentally friendly technique. However, the overall impact of PAHs on the regulation of plant metabolism has not yet been explored. In this study, we analyzed the alteration in the maize (Zea mays L.) metabolome on exposure to high molecular weight PAHs such as benzo[a]pyrene (BaP) and pyrene (PYR) in a hydroponic medium, individually and as a mixture (BaP + PYR) using GC-MS. The differences in the metabolites were analyzed using XCMS (an acronym for various forms (X) of chromatography-mass spectrometry), an online-based data analysis tool. A significant variation in metabolites was observed between treatment groups and the unspiked control group. The univariate, multivariate and pathway impact analysis showed there were more significant alterations in metabolic profiles between individual PAHs and the mixture of BaP and PYR. The marked changes in the metabolites of galactose metabolism and aminoacyl tRNA biosynthesis in PAHs treated maize leaves exhibit the adaptive defensive mechanisms for individual and PAHs mixture. Therefore, the metabolomics approach is essential for an understanding of the complex biochemical responses of plants to PAHs contaminants. This knowledge will shed new light in the field of phytoremediation, bio-monitoring, and environmental risk assessment.

Reduced phytotoxicity of propazine on wheat, maize and rapeseed by salicylic acid

Propazine belongs to the triazine herbicide family and widely used in the farmland for crop production. Recent studies have shown that the residue of propazine in environment is accumulative. This inevitably results in accumulation of propazine in crops. Therefore, reduction of propazine toxicity and accumulation in crops is critically important. In this study, the growth of wheat, maize and rapeseed was significantly inhibited by 2, 8 and 0.4 mg kg^-1 propazine in soils. The chlorophyll content of the three crops also showed significant decrease, while the electrolyte permeability, a biomarker of cellular damage, increased in the plant cells. However, when plants were sprayed with 5 mg L^-1 of salicylic acid (SA), the propazine phytotoxicity of the crops was relieved, with increased chlorophyll content and reduced electrolyte permeability of all crops. Meanwhile, the activities of peroxidase (POD) and glutathione transferase (GST) remained lower. The propazine accumulation in the crops and the residues in the soil were determined by high performance liquid chromatography. The concentration of propazine in plants and soils treated by SA was less than that of the untreated control. Six propazine degraded products (derivatives) in rhizosphere of wheat were characterized using ultraperformance liquid chromatography with a quadrupole-time-of-flight tandem mass spectrometer. Our work indicates that the improved growth of crops was possibly due to the acceleration of propazine degradation by salicylic acid.

Rhizoremediation of petroleum hydrocarbons: a model system for plant microbiome manipulation

Phytoremediation is a green and sustainable alternative to physico-chemical methods for contaminated soil remediation. One of the flavours of phytoremediation is rhizoremediation, where plant roots stimulate soil microbes to degrade organic contaminants. This approach is particularly interesting as it takes advantage of naturally evolved interaction mechanisms between plant and microorganisms and often results in a complete mineralization of the contaminants (i.e. transformation to water and CO2 ). However, many biotic and abiotic factors influence the outcome of this interaction, resulting in variable efficiency of the remediation process. The difficulty to predict precisely the timeframe associated with rhizoremediation leads to low adoption rates of this green technology. Here, we review recent literature related to rhizoremediation, with a particular focus on soil organisms. We then expand on the potential of rhizoremediation to be a model plant-microbe interaction system for microbiome manipulation studies.

Occurrence of polycyclic aromatic hydrocarbons in surface water and hospital wastewater

The main objective of this study was to determine the occurrence of polycyclic aromatic hydrocarbons (PAHs) in surface water samples collected from different points along the stream that flows through the Campus of the Federal University of Santa Maria, RS-Brazil. Before reaching the campus, the water in the stream is already contaminated by wastewater discharged from the surrounding, and once inside the Campus, additional wastewater from a Gas Station situated close to the University hospital. A bench scale photodegradation experiment was conducted of the occurring traces of anthracene, phenanthrene and naphthalene, with the aid of a stirred tank reactor and polymer-supported TiO₂ as a catalyst. To prevent loss of the low soluble analytes, it was necessary to add 5% and 10% acetonitrile, as an organic modifier of the synthetic aqueous solutions and real samples, respectively. An experimental design was employed and the best conditions for the photocatalysis of the aqueous solutions and real samples were pH 9 and pH 7, and 35°C and 30°C, respectively. Under optimized conditions, the analytes were completely degraded after 60 min of irradiation. The subproducts of the photocatalysis were identified through gas chromatography/mass spectrometry, and fragmentation routes were proposed. The mean concentrations of PAHs in the polluted surface water and hospital wastewater were relatively high: 3.9 ± 1.7 and 21.5 ± 2.8 µg L^-1, respectively. A preliminary risk assessment revealed that the presence of anthracene requires particular attention. The risk posed by the occurrence of PAHs in the surface water and hospital wastewater samples confirms the need for an efficient treatment system.

Impact of plant photosystems in the remediation of benzo[a]pyrene and pyrene spiked soils

The phytoremediation potential of 14 different plant species belonging to C3 and C4 carbon fixation pathway for soils spiked with polycyclic aromatic hydrocarbons (PAHs) such as benzo[a]pyrene (B[a]P) and pyrene (PYR) was investigated. A glasshouse experiment was conducted to measure the changes in morphological, physiological, biochemical parameters and the bioaccumulation and biodegradation ability of the plants in soils spiked with 48 and 194 mg kg^-1 of B[a]P and PYR, respectively. The per cent removal efficacy of B[a]P and PYR by the tested plant species over a period of 50 days was from 6 to 26% and 14 to 40% respectively. The maximum removal of both B[a]P and PYR was observed in Sudan grass (C4), vetiver (C4), maize (C4), and sunflower (C3). In terms of accumulation in root and shoot, the concentration of PYR was higher in both C3 and C4 plant species when compared to B[a]P. Overall the results indicated that C4 plants were more efficient than their C3 counterparts in terms of morphological, physiological, biochemical and degradation ability of PAHs.

The relationship of chromophoric dissolved organic matter parallel factor analysis fluorescence and polycyclic aromatic hydrocarbons in natural surface waters

Polycyclic aromatic hydrocarbons (PAHs), a large group of persistent organic pollutants (POPs), have caused wide environmental pollution and ecological effects. Chromophoric dissolved organic matter (CDOM), which consists of complex compounds, was seen as a proxy of water quality. An attempt was made to understand the relationships of CDOM absorption parameters and parallel factor analysis (PARAFAC) components with PAHs under seasonal variation in the riverine, reservoir, and urban waters of the Yinma River watershed in 2016. These different types of water bodies provided wide CDOM and PAHs concentration ranges with CDOM absorption coefficients at a wavelength of 350 nm (a _CDOM(350)) of 1.17-20.74 m^-1 and total PAHs of 0-1829 ng/L. CDOM excitation-emission matrix (EEM) presented two fluorescent components, e.g., terrestrial humic-like (C1) and tryptophan-like (C2) were identified using PARAFAC. Tryptophan-like associated protein-like fluorescence often dominates the EEM signatures of sewage samples. Our finding is that seasonal CDOM EEM-PARAFAC and PAHs concentration showed consistent tendency indicated that PAHs were un-ignorable pollutants. However, the disparities in seasonal CDOM-PAH relationships relate to the similar sources of CDOM and PAHs, and the proportion of PAHs in CDOM. Overlooked and poorly appreciated, quantifying the relationship between CDOM and PAHs has important implications, because these results simplify ecological and health-based risk assessment of pollutants compared to the traditional chemical measurements.

A review of germination and early growth as a proxy for plant fitness under petrogenic contamination - knowledge gaps and recommendations

Germination-an important stage in the life cycle of plants-is susceptible to the presence of soil contaminants. Since the early 1990s, the use of germination tests to screen multiple plant species to select candidates for phytoremediation has received much attention. This is due to its inexpensive methodology and fast assessment relative to greenhouse or field growth studies. Surprisingly, no comprehensive synthesis is available of these studies in the scientific literature. As more plant species are added to phytoremediation databases, it is important to encapsulate the knowledge thus far and revise protocols. In this review, we have summarised previously-documented effects of petroleum hydrocarbons on germination and seedling growth. The methods and materials of previous studies are presented in tabulated form. Common practice includes the use of cellulose acetate filter paper, plastic Petri dishes, and low numbers of seeds and replicates. A general bias was observed for the screening of cultivated crops as opposed to native species, even though the latter may be better suited to site conditions. The relevance of germination studies as important ecotoxicological tools is highlighted with the proposed use of root imaging software. Screening of novel plant species, particularly natives, is recommended with selection focussed on (i) species phylogeny, (ii) plant morphological and functional traits, and (iii) tolerance towards harsh environmental stresses. Recommendations for standardised protocols for germination and early growth monitoring are made in order to improve the robustness of statistical modelling and species selection in future phytoremediation evaluations and field programs.

Effect of wetland plants and bacterial inoculation on dissipation of phenanthrene

This study attempts to evaluate the capacity of wetland plants' ability to dissipate phenanthrene (PHE) under waterlogged conditions. The results indicate that Typha latifolia and Vetiveria zizanioides may efficiently degrade PHE, and were much more effective when under combined plant cultivation with the inoculation of Pseudomonas frederiksbergensis (ATCC BAA-257) . Concentrations of PHE declined from 200 to less than 52 mg kg^-1 in all treatments with plant cultivation. At the end of the experimental period, PHE was undetectable in combined plant cultivation in the presence of bacteria inoculation. Microbial biomass C(carbon), N(nitrogen), and P(phosphate) were significantly different (p < 0.05) in the presence and absence of bacteria inoculation with bacteria inoculation significantly (p < 0.05) increased microbial biomass P. The presence of bacteria inoculation and different plant species significantly (p < 0.05) decreased the PHE concentrations in the microcosms. The inoculation of bacteria and release of exudates from plant roots further enhanced the dissipation of PHE in sand. Concentrations of citric and malic acids were decreased up to 69% in bacteria-inoculated treatments, showing large citric and malic acids serving as a food source and growth substrate for bacteria.

The role of artificial root exudate components in facilitating the degradation of pyrene in soil

Root exudates play an important role in the phytoremediation of soils contaminated by organic pollutants, but how root exudate components affect the remediation process is not well understood. In this study, we explored the effects and mechanisms of the major root exudates, including glucose, organic acids, and serine, in the rhizoremediation of pyrene-contaminated soil. The results showed that glucose increased the degradation of pyrene (54.3 ± 1.7%) most significantly compared to the organic acids (45.5 ± 2.5%) and serine (43.2 ± 0.1%). Glucose could significantly facilitate the removal of pyrene in soil through promoting dehydrogenase activity indicated by a positive correlation between the removal efficiency of pyrene and the soil dehydrogenase activity (p < 0.01). Furthermore, root exudates were able to change soil microbial community, particularly the bacterial taxonomic composition, thereby affecting the biodegradation of pyrene. Glucose could alter soil microbial community and enhance the amount of Mycobacterium markedly, which is dominant in the degradation of pyrene. These findings provide insights into the mechanisms by which root exudates enhance the degradation of organic contaminants and advance our understanding of the micro-processes involved in rhizoremediation.

Comprehensive analysis of degradation and accumulation of ametryn in soils and in wheat, maize, ryegrass and alfalfa plants

Ametryn is a selective herbicide belonging to the triazine family and widely used for killing annual grasses or weeds in China and other parts of the world. However, reports on its environmental risk assessment with regard to soil and crop contamination are limited. In this study, accumulation of ametryn in wheat, maize, ryegrass and alfalfa crops along with ametryn residues in the soil planted with the plants were comparatively investigated. Soil enzyme activities and low molecular weight organic acids (LMWOAs), as well as antioxidant and degradation enzyme activities in plant tissues were measured. The maximum accumulation of ametryn was found in shoots and roots of wheat and alfalfa. Ryegrass had the maximum ametryn translocation factor (TF) from roots to shoots, with more than three times over the other crops. The ametryn residue in ryegrass-planted soil was much lower than that in soil planted with others. The residual content of ametryn in crop-planted soils was ordered as rhizosphere soil<bulk soil<non-rhizosphere soil<control (without plants). Activities of catalase (CAT), glutathione S-transferase (GST) and laccase (LAC) in ametryn-exposed ryegrass were significant higher than those in non-ametryn exposed ryegrass. The maximum activities of CAT in ryegrass shoot and root were increased by 6.16- and 28.84-fold over the control, respectively. Exudation of organic acids in the crop was induced by ametryn and contributed a lot to the degradation of the herbicide. Thus, ryegrass was shown to have a relatively strong ability to remove ametryn from ametryn-contaminated soil and its plant tissues as well.

Combined remediation of pyrene-contaminated soil with a coupled system of persulfate oxidation and phytoremediation with ryegrass

The in situ chemical oxidation technology (ISCO) and phytoremediation for PAHs have been studied respectively, but few focus on the feasibility of combining persulfate with ryegrass. This literature revealed the effect of persulfate oxidation on the growth of ryegrass and the removal ratios of pyrene in the couple system of persulfate oxidation and phytoremediation. The results demonstrated that half of pyrene in test soil was oxidized by persulfate in 7 days and then the residual pyrene concentration was decreased to a lower level by ryegrass in the following 2 months in oxidation treatment and drip washing and plants (OWP) and oxidation treatment and drip washing and plants and fertilization (OWFP) treatment. Ryegrass could grow well after persulfate oxidation with the oxidized soil washed by water. Ryegrass in OWP and OWFP treatments had higher ratios of overground and underground biomass. However, the seeds of ryegrass cannot germinate when drip washing was omitted. Pyrene together with residual persulfate changed soil enzyme activities. Drip washing and the growth of ryegrass made soil enzyme activities tend to returned to normal levels. Persulfate oxidation and phytoremediation were compatible to make contributions to the dissipation of pyrene. Persulfate oxidation activated by heat had higher removal efficiency of PAHs and phytoremediation could further decrease the pyrene concentration in spiked soil.

Amplified solubilization effects of inherent dissolved organic matter releasing from less-humified sediment on phenanthrene sorption

Soil/sediment organic matter (SOM) releasing with inherent dissolved organic matter (DOM) formed in solution was confirmed both in rhizosphere sediment (S) and uncultivated sediment (P) water systems, and correlations between SOM characteristics subject to sediment's humification degree and its releasing effects on phenanthrene sorption were emphasized. The sequential SOM releasing evidenced by fluorescence and (1)H-NMR profiles coupled with aqueous DOM solubilization was found to make sorption kinetics atypical and sorption capacity reduced, by comparing sorption results among sediments of different pretreatments. More importantly, the tested S was proved less humified with inherent DOM rich in microbial sources than P, and DOM affinity to phenanthrene was thus weakened (K doc values of 2.02-3.63 × 10(4) L kg(-1)), while the inhibitive effects of SOM releasing on sorption were strengthened, ascribing to the enlarged alterations of sediment characters, and particularly the amplified solubilization effects resulted from the larger proportion of soluble SOM and lower critical micelle concentration (5.66 mg L(-1)) of DOM. Moreover, relative contribution of DOM solubilization to the releasing effects enhanced from 0.67 for P to 0.78 for S relative to alterations of sediment characters. Consequently, mobility and exposure risk of polycyclic aromatic hydrocarbons would be enhanced in a plant-soil/sediment-water system.

Diversity and distribution of 16S rRNA and phenol monooxygenase genes in the rhizosphere and endophytic bacteria isolated from PAH-contaminated sites

This is the first investigation of the diversity and distribution of 16S rRNA and phenol monooxygenase (PHE) genes in endophytic and rhizosphere bacteria of plants at sites contaminated with different levels of PAHs. Ten PAHs at concentrations from 34.22 to 55.29 and 45.79 to 97.81 mg·kg⁻¹ were measured in rhizosphere soils of Alopecurus aequalis Sobol and Oxalis corniculata L., respectively. The diversity of 16S rRNA and PHE genes in rhizosphere soils or plants changed with varying PAH pollution levels, as shown based on PCR-DGGE data. Generally, higher Shannon-Weiner indexes were found in mild or moderate contaminated areas. A total of 82 different bacterial 16S rRNA gene sequences belonging to five phyla; namely, Acfinobacteria, Proteobacteria, Chloroflexi, Cyanophyta, and Bacteroidetes, were obtained from rhizosphere soils. For the 57 identified PHE gene sequences, 18 were excised from rhizosphere bacteria and 39 from endophytic bacteria. The copy numbers of 16S rRNA and PHE genes in rhizosphere and endophytic bacteria varied from 3.83 × 10³ to 2.28 × 10⁶ and 4.17 × 10² to 1.99 × 10⁵, respectively. The copy numbers of PHE genes in rhizosphere bacteria were significantly higher than in endophytic bacteria. Results increase our understanding of the diversity of rhizosphere and endophytic bacteria from plants grown in PAH-contaminated sites.

Plant-assisted rhizoremediation of decabromodiphenyl ether for e-waste recycling area soil of Taizhou, China

To develop an effective phytoremediation approach to purify soils polluted by decabromodiphenyl ether (BDE-209) in e-waste recycling area, pot experiments were conducted through greenhouse growth of seven plant species in BDE-209-polluted soils. The hygrocolous rice (Oryza sativa L.) cultivars (XiuS and HuangHZ) and the xerophyte ryegrass (Lolium perenne L.) were found to be as the most effective functional plants for facilitating BDE-209 dissipation, with the removal of 52.9, 41.9, and 38.7% in field-contaminated soils (collected directly from field, with an average pollution concentration of 394.6 μg BDE-209 kg(-1) soil), as well as 21.7, 27.6, and 28.1% in freshly spiked soils (an average pollution concentration of 4413.57 μg BDE-209 kg(-1) soil, with additional BDE-209 added to field-contaminated soils), respectively. Changes in soil phospholipid fatty acid (PLFA) profiles revealed that different selective enrichments of functional microbial groups (e.g., arbuscular mycorrhizal fungi and gram-positive bacteria) were induced due to plant growth under contrasting water management (flooded-drained sequentially, flooded only, and drained only, respectively). The abundance of available electron donors and acceptors and the activities of soil oxido-reductases were also correspondingly modified, with the activity of catalase, and the content of NO3(-) and Fe(3+) increased generally toward most of the xerophyte treatments, while the activity of dehydrogenase and the content of dissolved organic carbon (DOC) and NH4(+) increased toward the hygrophyte treatments. This differentiated dissipation of BDE-209 in soils as function of plant species, pollution doses and time, and water-dependent redox condition. This study illustrates a possibility of phytoremediation for BDE-209-polluted soils by successive cultivation of rice followed by ryegrass coupling with suitable water management, possibly through dissipation pathway of microbial reductive debromination and subsequent aerobic oxidative cleavage of benzene ring.

Remedial effects of Potamogeton crispus L. on PAH-contaminated sediments

In this study, the remedial effects of submerged macrophyte Potamogeton crispus L. on polycyclic aromatic hydrocarbon (PAH)-contaminated sediments were investigated. After a 54-day experiment, the dissipation ratios of phenanthrene and pyrene were 84.8-88.3 and 72.4-78.5% in rhizosphere sediments, which were significantly higher than those in non-rhizosphere sediments (54.2-66.6 and 54.7-58.5%). The dissipation increment increased not only with increasing spiked concentration, but also over time, while plant uptake accounted for only a small portion (<6%) of the dissipation increment. Moreover, bioavailable fraction tests revealed that biodegradation was not controlled by the amount of bioavailable PAHs. For better understanding of the microbial mechanism involved, phospholipid fatty acid (PLFA) profiles were analyzed. Biomass of microorganisms indicated by the total PLFA content was higher in rhizosphere sediments than in non-rhizosphere sediments and was related well to the dissipation ratios of the two PAHs. Cluster analysis showed that community structure significantly changed in rhizosphere sediments. Moreover, the increments of PAH dissipation in rhizosphere sediments had a strong positive correlation with those of polyphenol oxidase activities in the same media. It can be concluded that the enhanced remediation of PAHs by P. crispus was mainly due to the increase of microbial biomass and activity as well as changes of microbial community structure in sediments as a result of plant growth stimulation.

Dissipation of phenanthrene and pyrene at the aerobic-anaerobic soil interface: differentiation induced by the rhizosphere of PAH-tolerant and PAH-sensitive rice (Oryza sativa L.) cultivars

A pot experiment was conducted to reveal the removal of two polycyclic aromatic hydrocarbons (PAHs) (phenanthrene, PHE, and pyrene, PYR) during rice cultivation in a paddy field. The rhizosphere effect on facilitating dissipation of PAHs varied simultaneously as a function of soil properties, PAH types, cultivation time, and genotypes within rice cultivars, with differences performed for PYR but not PHE. Changes in soil PLFA profiles evidenced that the growth of rice roots modified the dominant species within rhizosphere microbial communities and induced a selective enrichment of Gram-negative aerobic bacteria capable of degrading, thereby resulting in the differentiated dissipation of PYR. While the insignificant differences in PHE dissipation might be attributed to its higher solubility and availability under flooded condition that concealed the differences in improvement of bioavailability for microorganisms between rhizosphere and non-rhizosphere, and between both soils and both rice cultivars. Our findings illustrate that the removal of PAHs in paddy soils was more complex relative to those in dryland soils. This was possibly due to the specialty of rice roots for oxygen secretion that provides development of redox heterogeneous microbial habitats at root-soil interface under flooded condition.

Enhanced degradation of Herbicide Isoproturon in wheat rhizosphere by salicylic acid

This study investigated the herbicide isoproturon (IPU) residues in soil, where wheat was cultivated and sprayed with salicylic acid (SA). Provision of SA led to a lower level of IPU residues in rhizosphere soil compared to IPU treatment alone. Root exudation of tartaric acid, malic acid, and oxalic acids was enhanced in rhizosphere soil with SA-treated wheat. We examined the microbial population (e.g., biomass and phospholipid fatty acid), microbial structure, and soil enzyme (catalase, phenol oxidase, and dehydrogenase) activities, all of which are associated with soil activity and were activated in rhizosphere soil of SA-treated wheat roots. We further assessed the correlation matrix and principal component to figure out the association between the IPU degradation and soil activity. Finally, six IPU degraded products (derivatives) in rhizosphere soil were characterized using ultraperformance liquid chromatography with a quadrupole-time-of-flight tandem mass spectrometer (UPLC/Q-TOF-MS/MS). A relatively higher level of IPU derivatives was identified in soil with SA-treated wheat than in soil without SA-treated wheat plants.

Selection of wild macrophytes for use in constructed wetlands for phytoremediation of contaminant mixtures

Constructed wetlands (CWs) offer an alternative to traditional industrial wastewater treatment systems that has been proved to be efficient, cost-effective and environmentally friendly. Most of the time, CWs are planted with proliferative species such as Phragmites australis or with plants originating from nurseries, both representing a risk for the natural biodiversity conservation of aquatic ecosystems located downstream of the CWs. For the removal of metals and organic pollutant mixtures present in industrial effluents, it is necessary to select tolerant plant species that are able to produce a high aboveground biomass and to develop a healthy belowground system. Wild plant species growing in aquatic bodies at industrial outfalls could constitute suitable tolerant species to use in CWs for industrial effluent treatment. To test this hypothesis, we assessed, under laboratory conditions (using an experimental design), the tolerance to mixtures of metals (Al, As, Cd, Cu, Cr, Fe, Mn, Ni, Pb, Sn, Zn) or/and organic pollutants (THC, PHE, PYR, LAS) of five European sub-cosmopolitan native macrophytes (Alisma lanceolatum, Carex cuprina, Epilobium hirsutum, Iris pseudacorus and Juncus inflexus) that had been collected in a polluted Mediterranean wetland, after a field study (crossing ecological relevés and analyses of contaminant concentrations in water and sediments). Our results demonstrated that research on phytoremediation of industrial effluents should focus much more on the use of native macrophytes growing at short distances from industrial discharges (such as C. cuprina in this study), and that root/shoot ratio, aerial height and proportion of green leaves are good and cost-effective indicators of plant tolerance to metals and organic pollutant mixtures in laboratory studies.

Influence of plants on the distribution and composition of PBDEs in soils of an e-waste dismantling area: evidence of the effect of the rhizosphere and selective bioaccumulation

Rhizosphere effects on the distribution of PBDEs in e-waste contaminated soils were investigated. The geometric means of the PBDEs in the rhizosphere and non-rhizosphere soils were 32.6 ng/g and 12.2 ng/g, whereas the geometric means of the PBDEs in vegetable shoots and roots were 2.15 ng/g and 3.02 ng/g, respectively. PBDEs in soil at different distances from the root surface may first rise appreciably and then decrease to a non-rhizosphere level for long-term contaminated soils. Different PBDE compositions in roots and shoots indicated that PBDEs in shoots may be mainly taken up from the air. The ratios of BDE99/100 and BDE153/154 in plants and their corresponding soils were different. The bioaccumulations of BDEs 100 and 154 were much higher than those of BDEs 99 and 153, respectively. This indicated that the bioaccumulation was selective and influenced by the substitution pattern, with ortho-substituted isomers being more prevalent than meta-substituted isomers.

The role of root exuded low molecular weight organic anions in facilitating petroleum hydrocarbon degradation: current knowledge and future directions

Rhizoremediation is a bioremediation technique whereby enhanced microbial degradation of organic contaminants occurs within the plant root zone (rhizosphere). It is considered an effective and affordable 'green technology' for remediating soils contaminated with petroleum hydrocarbons (PHCs). This paper critically reviews the potential role of root exuded compounds in rhizoremediation, with emphasis on commonly exuded low molecular weight aliphatic organic acid anions (carboxylates). The extent to which remediation is achieved shows wide disparity among plant species. Therefore, plant selection is crucial for the advancement and widespread adoption of this technology. Root exudation is speculated to be one of the predominant factors leading to microbial changes in the rhizosphere and thus the potential driver behind enhanced petroleum biodegradation. Carboxylates can form a significant component of the root exudate mixture and are hypothesised to enhance petroleum biodegradation by: i) providing an easily degradable energy source; ii) increasing phosphorus supply; and/or iii) enhancing the contaminant bioavailability. These differing hypotheses, which are not mutually exclusive, require further investigation to progress our understanding of plant-microbe interactions with the aim to improve plant species selection and the efficacy of rhizoremediation.

Generation and distribution of PAHs in the process of medical waste incineration

After the deadly earthquake on May 12, 2008 in Wenchuan county of China, several different incineration approaches were used for medical waste disposal. This paper investigates the generation properties of polycyclic aromatic hydrocarbons (PAHs) during the incineration. Samples were collected from the bottom ash in an open burning slash site, surface soil at the open burning site, bottom ash from a simple incinerator, bottom ash generated from the municipal solid waste (MSW) incinerator used for medical waste disposal, and bottom ash and fly ash from an incinerator exclusively used for medical waste. The species of PAHs were analyzed, and the toxicity equivalency quantities (TEQs) of samples calculated. Analysis results indicate that the content of total PAHs in fly ash was 1.8×10(3) times higher than that in bottom ash, and that the strongly carcinogenic PAHs with four or more rings accumulated sensitively in fly ash. The test results of samples gathered from open burning site demonstrate that Acenaphthylene (ACY), Acenaphthene (ACE), Fluorene (FLU), Phenanthrene (PHE), Anthracene (ANT) and other PAHs were inclined to migrate into surrounding environment along air and surface watershed corridors, while 4- to 6-ring PAHs accumulated more likely in soil. Being consistent with other studies, it has also been confirmed that increases in both free oxygen molecules and combustion temperatures could promote the decomposition of polycyclic PAHs. In addition, without the influence of combustion conditions, there is a positive correlation between total PCDD/Fs and total PAHs, although no such relationship has been found for TEQ.

Distribution of PAHs in tissues of wetland plants and the surrounding sediments in the Chongming wetland, Shanghai, China

Polycyclic aromatic hydrocarbons (PAHs) concentrations were determined in sediments and three types of wetland plants collected from the intertidal flats in the Chongming wetland. The concentration of total PAHs in sediments ranged from 38.7 to 136.2 ngg(-1). Surface sediment concentrations were higher in regions with plant cover than in bare regions. Rhizome-layer sediments (56.8-102.4 ngg(-1)) contained less PAHs than surface sediments (0-5 cm). Concentrations of PAHs in plant tissues ranged from 51.9 to 181.2 ngg(-1), with highest concentrations in the leaves of Scirpus. Most of the PAHs in the leaves and other plant tissues were low molecular weight compounds (LMW, 2-4 rings), and a similar distribution pattern of PAHs in different types of plants was also observed. Source analysis indicated that plants and sediments both came from pyrogenic sources, but plants had additional petroleum contamination. The low ratio of benzo[a]anthracene over chrysene suggests that the wetland PAHs came mainly from long-distance atmospheric transportation. Significant bioaccumulation of PAHs from the sediments into plants was not observed for high molecular weight PAHs (HMW, 5-6 rings) in Chongming wetland. The small RCFs (root concentration factor from sediments) for HMW PAHs and large RCFs for LMW PAHs suggested that roots accumulated LMW PAHs selectively from sediments in Chongming wetland.

Persistence of the fluoroquinolone antibiotic difloxacin in soil and lacking effects on nitrogen turnover

The environmental risks caused by the use of fluoroquinolone antibiotics in human therapeutics and animal husbandry are associated with their persistence and (bio)accessibility in soil. To assess these aspects, we administered difloxacin to pigs and applied the contaminated manure to soil. We then evaluated the dissipation and sequestration of difloxacin in soil in the absence and presence of plants within a laboratory trial, a mesocosm trial, and a field trial. A sequential extraction yielded antibiotic fractions of differing binding strength. We also assessed the antibiotic's effects on nitrogen turnover in soil (potential nitrification and denitrification). Difloxacin was hardly (bio)accessible and was very persistent under all conditions studied (dissipation half-life in bulk soil, >217 d), rapidly forming nonextractable residues. Although varying environmental conditions did not affect persistence, dissipation was accelerated in soil surrounding plant roots. Effects on nitrogen turnover were limited due to the compound's strong binding and small (bio)accessibility despite its persistence.

Evaluation of dissipation gradients of polycyclic aromatic hydrocarbons in rice rhizosphere utilizing a sequential extraction procedure

The aim of this study was to evaluate the spatial dissipation gradient of PAHs, including phenanthrene, pyrene, and benzo[a]pyrene, with various bioavailability represented with sequential extraction. Dissipation rates of PAHs in the rhizosphere were greater than those in the bulk soil. The n-butanol extracted fraction showed a general trend of dissipation during phytoremediation. Moreover, the formation of bound PAH residues was inhibited in the rhizosphere. While concerning the PAH toxicity, the reduction rates of PAH toxicity were significantly greater than total soil PAH concentrations. Microbial biomass was the highest at four mm away from the root surface. However, the PAH dissipation rates were the highest at one mm and two mm away from the root surface in high and low PAH treatments, respectively. These results suggest that rhizoremediation with rice is a useful approach to reduce the toxicity of PAHs in soil.

Bioremediation approaches for organic pollutants: a critical perspective

Due to human activities to a greater extent and natural processes to some extent, a large number of organic chemical substances such as petroleum hydrocarbons, halogenated and nitroaromatic compounds, phthalate esters, solvents and pesticides pollute the soil and aquatic environments. Remediation of these polluted sites following the conventional engineering approaches based on physicochemical methods is both technically and economically challenging. Bioremediation that involves the capabilities of microorganisms in the removal of pollutants is the most promising, relatively efficient and cost-effective technology. However, the current bioremediation approaches suffer from a number of limitations which include the poor capabilities of microbial communities in the field, lesser bioavailability of contaminants on spatial and temporal scales, and absence of bench-mark values for efficacy testing of bioremediation for their widespread application in the field. The restoration of all natural functions of some polluted soils remains impractical and, hence, the application of the principle of function-directed remediation may be sufficient to minimize the risks of persistence and spreading of pollutants. This review selectively examines and provides a critical view on the knowledge gaps and limitations in field application strategies, approaches such as composting, electrobioremediation and microbe-assisted phytoremediation, and the use of probes and assays for monitoring and testing the efficacy of bioremediation of polluted sites.

Responses of Scirpus triqueter, soil enzymes and microbial community during phytoremediation of pyrene contaminated soil in simulated wetland

The aim of this study was to determine the enhancement of Scirpus triqueter in the dissipation of pyrene and the interaction of pyrene with plant, soil enzymes and microbial community. The results indicated that the dissipation ratios of pyrene in the rhizospheric and non-rhizospheric soil were 64.65 ± 3.86% and 54.49 ± 2.74%, respectively, and were higher than that in the unplanted soil (42.60 ± 0.71%) at 80 d after planting S. triqueter. The pyrene was toxic to S. triqueter, as evidenced by growth inhibition in height, diameter, shoot number and biomass during the planting period. The activities of dehydrogenase decreased significantly at the presence of pyrene in soils, and increased remarkably with the introduction of S. triqueter. It was found that the pyrene addition increased the ratios of fungal/total fatty acids and gram-positive/gram-negative, but the presence of S. triqueter decreased the ratios of gram-positive/gram-negative. A larger stress level was found in the pyrene treated soils without S. triqueter. The ratio of aerobic/anaerobic bacteria decreased with increasing pyrene concentration, but increased when S. triqueter was planted. The principal analysis of phospholipid fatty acid signatures revealed that microbial community structures in the rhizospheric and non-rhizospheric soil were similar, but different from those in the unplanted and control soil.

Polynuclear aromatic hydrocarbons (PAHs) mediate cadmium toxicity to an emergent wetland species

Growth and pollutant removal by emergent wetland plants may be influenced by interactions among mixed pollutants in constructed wetlands. A glasshouse experiment was conducted to investigate interactive effects of cadmium (Cd) × polynuclear aromatic hydrocarbons (PAHs) × plant treatments on growth of Juncus subsecundus, Cd and PAH removal from soil and the total number of microorganisms in soil. Growth and biomass of J. subsecundus were significantly influenced by interaction of Cd and PAHs, significantly decreasing with either Cd or PAH additions, but with the effect of Cd on plant growth being stronger than that of PAHs. The mixture of low Cd and low PAH lessened Cd toxicity to plants, resulting in improved plant growth and increased Cd accumulation in plant tissues, thus enhancing Cd removal by plants. The dissipation of PAHs in soils was significantly influenced by interactions of Cd, PAH and plant presence or absence. The total number of microorganisms in soils was significantly increased by the PAH additions. The interactive effect of Cd and PAHs on plant growth may be linked to the changes in the abundance of microorganisms in the rhizosphere, probably via a positive effect of PAH metabolites and/or phytohormones produced by microorganisms on plant growth.

Phenanthrene and pyrene uptake by arbuscular mycorrhizal maize and their dissipation in soil

Polycyclic aromatic hydrocarbons (PAHs) commonly found in soils can be degraded in rhizosphere, but may also be taken up by plants. The effects of arbuscular mycorrhizal (AM) fungi on uptake of phenanthrene (PHE) and pyrene (PYR) in maize and on their dissipation in soil were investigated using the three-compartmentalized rhizoboxes. Inoculation of Glomus mosseae significantly (p<0.01) increased PHE and PYR concentrations in maize roots and significantly (p<0.05) enhanced PYR translocation from roots to stems in the soil treatments of the PHE+PYR spiked-soils added into the central compartment of the rhizoboxes. There was a significant (p<0.05) dissipation gradient of PHE and PYR observed away from the maize roots, with the highest dissipation rates recorded in rhizosphere zone in the central compartments of the rhizoboxes, followed by near rhizosphere zone and bulk soil zone in the outer compartments. However, G. mosseae only exerted minimal impacts on dissipation of PHE and PYR in the rhizosphere. The present study suggested that the hyphae and extraradical mycelium of AM fungi could play important roles in the uptake and translocation of PHE and PYR in plants. The present results indicated that there is a potential for the use of AM fungi and plant for remediating PAHs contaminated soils.

Polynuclear aromatic hydrocarbons (PAHs) differentially influence growth of various emergent wetland species

The growth of emergent wetland plants may be influenced by toxic organic pollutants, which would influence the extent of phytoremediation when used in constructed wetlands. A series of glasshouse experiments were conducted to investigate the influence of polynuclear aromatic hydrocarbons (PAHs) on the growth of various emergent wetland species. The response of species to PAHs varied significantly. A significant interaction (species x PAH treatment) was observed for relative growth rates (RGRs) of Baumea juncea, Baumea articulata, Schoenoplectus validus and Juncus subsecundus in hydroponics with naphthalene, and of B. juncea and J. subsecundus in soils freshly spiked with phenanthrene and pyrene. In hydroponics, biomass of B. articulata significantly increased in the treatments with relatively low addition of naphthalene, whereas that of S. validus significantly increased with all naphthalene additions. In both hydroponics and soils, the growth of B. juncea increased with the PAH (phenanthrene and pyrene) additions, whereas that of J. subsecundus decreased in the treatments with relatively high concentrations of PAHs. The removal of PAHs from soil was not affected significantly by J. subsecundus after 70 days of growth and B. juncea after 150 days of growth. The growth of J. subsecundus was slightly (but not significantly) influenced by the PAH residues in soil. The effect of PAHs on wetland plant growth could be species-specific regardless of PAH types and media. The response of species to PAHs needs to be taken into account when selecting species for wetlands constructed for phytoremediation.

Quantitative structure-activity relationship (QSAR) models for polycyclic aromatic hydrocarbons (PAHs) dissipation in rhizosphere based on molecular structure and effect size

Rhizoremediation is a significant form of bioremediation for polycyclic aromatic hydrocarbons (PAHs). This study examined the role of molecular structure in determining the rhizosphere effect on PAHs dissipation. Effect size in meta-analysis was employed as activity dataset for building quantitative structure-activity relationship (QSAR) models and accumulative effect sizes of 16 PAHs were used for validation of these models. Based on the genetic algorithm combined with partial least square regression, models for comprehensive dataset, Poaceae dataset, and Fabaceae dataset were built. The results showed that information indices, calculated as information content of molecules based on the calculation of equivalence classes from the molecular graph, were the most important molecular structural indices for QSAR models of rhizosphere effect on PAHs dissipation. The QSAR model, based on the molecular structure indices and effect size, has potential to be used in studying and predicting the rhizosphere effect of PAHs dissipation.