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Quinn GA, Connolly M, Fenton NE, Hatfill SJ, Hynds P, ÓhAiseadha C, Sikora K, Soon W, Connolly R. Influence of Seasonality and Public-Health Interventions on the COVID-19 Pandemic in Northern Europe. J Clin Med 2024; 13:334. [PMID: 38256468 PMCID: PMC10816378 DOI: 10.3390/jcm13020334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 12/22/2023] [Accepted: 01/03/2024] [Indexed: 01/24/2024] Open
Abstract
BACKGROUND Most government efforts to control the COVID-19 pandemic revolved around non-pharmaceutical interventions (NPIs) and vaccination. However, many respiratory diseases show distinctive seasonal trends. In this manuscript, we examined the contribution of these three factors to the progression of the COVID-19 pandemic. METHODS Pearson correlation coefficients and time-lagged analysis were used to examine the relationship between NPIs, vaccinations and seasonality (using the average incidence of endemic human beta-coronaviruses in Sweden over a 10-year period as a proxy) and the progression of the COVID-19 pandemic as tracked by deaths; cases; hospitalisations; intensive care unit occupancy and testing positivity rates in six Northern European countries (population 99.12 million) using a population-based, observational, ecological study method. FINDINGS The waves of the pandemic correlated well with the seasonality of human beta-coronaviruses (HCoV-OC43 and HCoV-HKU1). In contrast, we could not find clear or consistent evidence that the stringency of NPIs or vaccination reduced the progression of the pandemic. However, these results are correlations and not causations. IMPLICATIONS We hypothesise that the apparent influence of NPIs and vaccines might instead be an effect of coronavirus seasonality. We suggest that policymakers consider these results when assessing policy options for future pandemics. LIMITATIONS The study is limited to six temperate Northern European countries with spatial and temporal variations in metrics used to track the progression of the COVID-19 pandemic. Caution should be exercised when extrapolating these findings.
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Affiliation(s)
- Gerry A. Quinn
- Centre for Molecular Biosciences, Ulster University, Coleraine BT52 1SA, UK
| | | | - Norman E. Fenton
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London E1 4NS, UK
| | | | - Paul Hynds
- Spatiotemporal Environmental Epidemiology Research (STEER) Group, Environmental Sustainability & Health Institute, Technological University Dublin, D07 H6K8 Dublin, Ireland
- Irish Centre for Research in Applied Geoscience, University College Dublin, D04 F438 Dublin, Ireland
| | - Coilín ÓhAiseadha
- Spatiotemporal Environmental Epidemiology Research (STEER) Group, Environmental Sustainability & Health Institute, Technological University Dublin, D07 H6K8 Dublin, Ireland
- Department of Public Health, Health Service Executive, Dr Steevens’ Hospital, D08 W2A8 Dublin, Ireland
| | - Karol Sikora
- Department of Medicine, University of Buckingham Medical School, Buckingham MK18 1EG, UK
| | - Willie Soon
- Institute of Earth Physics and Space Science (ELKH EPSS), H-9400 Sopron, Hungary
- Center for Environmental Research and Earth Sciences (CERES), Salem, MA 01970, USA
| | - Ronan Connolly
- Independent Researcher, D08 Dublin, Ireland
- Center for Environmental Research and Earth Sciences (CERES), Salem, MA 01970, USA
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Hodel K, Fonseca A, Barbosa I, Medina C, Alves B, Maciel C, Nascimento D, Oliveira-Junior G, Pedreira L, de Souza M, Godoy AL. Obesity and its Relationship with Covid-19: A Review of the Main Pharmaceutical Aspects. Curr Pharm Biotechnol 2024; 25:1651-1663. [PMID: 38258769 DOI: 10.2174/0113892010264503231108070917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 09/28/2023] [Accepted: 10/04/2023] [Indexed: 01/24/2024]
Abstract
Important physiological changes are observed in patients with obesity, such as intestinal permeability, gastric emptying, cardiac output, and hepatic and renal function. These differences can determine variations in the pharmacokinetics of different drugs and can generate different concentrations at the site of action, which can lead to sub therapeutic or toxic concentrations. Understanding the physiological and immunological processes that lead to the clinical manifestations of COVID-19 is essential to correlate obesity as a risk factor for increasing the prevalence, severity, and lethality of the disease. Several drugs have been suggested to control COVID- 19 like Lopinavir, Ritonavir, Ribavirin, Sofosbuvir, Remdesivir, Oseltamivir, Oseltamivir phosphate, Oseltamivir carboxylate, Hydroxychloroquine, Chloroquine, Azithromycin, Teicoplanin, Tocilizumab, Anakinra, Methylprednisolone, Prednisolone, Ciclesonide and Ivermectin. Similarly, these differences between healthy people and obese people can be correlated to mechanical factors, such as insufficient doses of the vaccine for high body mass, impairing the absorption and distribution of the vaccine that will be lower than desired or can be linked to the inflammatory state in obese patients, which can influence the humoral immune response. Additionally, different aspects make the obese population more prone to persistent symptoms of the disease (long COVID), which makes understanding these mechanisms fundamental to addressing the implications of the disease. Thus, this review provides an overview of the relationship between COVID-19 and obesity, considering aspects related to pharmacokinetics, immunosuppression, immunization, and possible implications of long COVID in these individuals.
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Affiliation(s)
- Katharine Hodel
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Ananda Fonseca
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Islania Barbosa
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Caio Medina
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Brenda Alves
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Carine Maciel
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Daniel Nascimento
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Gessualdo Oliveira-Junior
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Lorena Pedreira
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Monielly de Souza
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
| | - Ana Leonor Godoy
- Department of Clinical and Toxicological Analysis, Faculty of Pharmacy, Federal University of Bahia, Salvador, Brazil
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Xiong R, Li X. Geospatial analysis in the United States reveals the changing roles of temperature on COVID-19 transmission. GEOSPATIAL HEALTH 2023; 18. [PMID: 37470265 DOI: 10.4081/gh.2023.1213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Accepted: 06/30/2023] [Indexed: 07/21/2023]
Abstract
Environmental factors are known to affect outbreak patterns of infectious disease, but their impacts on the spread of COVID-19 along with the evolution of this relationship over time intervals and in different regions are unclear. This study utilized 3 years of data on COVID-19 cases in the continental United States from 2020 to 2022 and the corresponding weather data. We used regression analysis to investigate weather impacts on COVID-19 spread in the mainland United States and estimate the changes of these impacts over space and time. Temperature exhibited a significant and moderately strong negative correlation for most of the US while relative humidity and precipitation experienced mixed relationships. By regressing temperature factors with the spreading rate of waves, we found temperature change can explain over 20% of the spatial-temporal variation in the COVID-19 spreading, with a significant and negative response between temperature change and spreading rate. The pandemic in the continental United States during 2020-2022 was characterized by seven waves, with different transmission rates and wave peaks concentrated in seven time periods. When repeating the analysis for waves in the seven periods and nine climate zones, we found temperature impacts evolve over time and space, possibly due to virus mutation, changes in population susceptibility, social behavior, and control measures. Temperature impacts became weaker in 6 of 9 climate zones from the beginning of the epidemic to the end of 2022, suggesting that COVID-19 has increasingly adapted to wider weather conditions.
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Affiliation(s)
| | - Xiaolong Li
- Department of Environmental and Global Health, College of Public Health and Health Professions, University of Florida, Gainesville, FL.
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4
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Mohseni Afshar Z, Barary M, Hosseinzadeh R, Karim B, Ebrahimpour S, Nazary K, Sio TT, Sullman MJM, Carson-Chahhoud K, Moudi E, Babazadeh A. COVID-19 vaccination challenges: A mini-review. Hum Vaccin Immunother 2022; 18:2066425. [PMID: 35512088 PMCID: PMC9302531 DOI: 10.1080/21645515.2022.2066425] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 02/11/2022] [Accepted: 02/28/2022] [Indexed: 02/07/2023] Open
Abstract
The emergence of SARS-CoV-2 has led to the infection of many people across the globe, over six million deaths, and has placed an unprecedented burden on public health worldwide. The pandemic has led to the high-speed development and production of vaccines against the COVID-19, as vaccines can end the pandemic. At the beginning of the program, vaccinations were initially targeted only at high-risk groups, such as the elderly, those with comorbidities, or healthcare workers. Although most of the mentioned populations have received the two recommended doses, limited resources have left many authorities with an effective vaccine undersupply. Therefore, policies have been implemented to manage the available doses of the vaccines more efficiently. As there is no universally agreed consensus on this topic, we discuss the different recommendations and guidelines regarding the time interval between the two vaccine doses and explain the different scenarios for applying the two doses.
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Affiliation(s)
- Zeinab Mohseni Afshar
- Clinical Research Development Center, Imam Reza Hospital, Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Mohammad Barary
- Student Research Committee, Virtual School of Medical Education and Management, Shahid Beheshti University of Medical Sciences, Tehran, Iran
- Students’ Scientific Research Center (SSRC), Tehran University of Medical Sciences, Tehran, Iran
| | - Rezvan Hosseinzadeh
- Student Research Committee, Babol University of Medical Sciences, Babol, Iran
| | - Bardia Karim
- Student Research Committee, Babol University of Medical Sciences, Babol, Iran
| | - Soheil Ebrahimpour
- Infectious Diseases and Tropical Medicine Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, Iran
| | - Kosar Nazary
- Student Research Committee, Babol University of Medical Sciences, Babol, Iran
| | - Terence T. Sio
- Department of Radiation Oncology, Mayo Clinic, Phoenix, Arizona, USA
| | - Mark J. M. Sullman
- Department of Social Sciences, University of Nicosia, Nicosia, Cyprus
- Department of Life and Health Sciences, University of Nicosia, Nicosia, Cyprus
| | | | - Emaduddin Moudi
- Clinical Research Development Center, Shahid Beheshti Hospital, Babol University of Medical Sciences, Babol, Iran
| | - Arefeh Babazadeh
- Infectious Diseases and Tropical Medicine Research Center, Health Research Institute, Babol University of Medical Sciences, Babol, Iran
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5
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Investigation of turning points in the effectiveness of Covid-19 social distancing. Sci Rep 2022; 12:17783. [PMID: 36273235 PMCID: PMC9588076 DOI: 10.1038/s41598-022-22747-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 10/19/2022] [Indexed: 01/19/2023] Open
Abstract
Covid-19 is the first digitally documented pandemic in history, presenting a unique opportunity to learn how to best deal with similar crises in the future. In this study we have carried out a model-based evaluation of the effectiveness of social distancing, using Austria and Slovenia as examples. Whereas the majority of comparable studies have postulated a negative relationship between the stringency of social distancing (reduction in social contacts) and the scale of the epidemic, our model has suggested a varying relationship, with turning points at which the system changes its predominant regime from 'less social distancing-more cumulative deaths and infections' to 'less social distancing-fewer cumulative deaths and infections'. This relationship was found to persist in scenarios with distinct seasonal variation in transmission and limited national intensive care capabilities. In such situations, relaxing social distancing during low transmission seasons (spring and summer) was found to relieve pressure from high transmission seasons (fall and winter) thus reducing the total number of infections and fatalities. Strategies that take into account this relationship could be particularly beneficial in situations where long-term containment is not feasible.
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6
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Gigler F, Urach C, Bicher M. Contact Tracing for Disease Containment: a Network-Based Analysis. IFAC-PAPERSONLINE 2022; 55:451-456. [PMID: 38620972 PMCID: PMC9507115 DOI: 10.1016/j.ifacol.2022.09.136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Since the outbreak of the COVID-19 pandemic in spring 2020, the concept of test, trace, and isolate (TTI) was used as a non-pharmaceutical intervention against further spreading of the disease. Hereby, recent contact partners of newly confirmed SARS-CoV-2 infected persons were identified and isolated along with the originally detected case to avoid potential secondary infections. While the policy is, given the compliance of the traced persons, generally deemed efficient, not much is known about network-specific impact factors. In this work, we aim to evaluate the effectiveness of the TTI strategy when used (1) for diseases with different infectiousness levels and (2) on different contact networks. For the prior, we vary the infection probability per contact, for the latter, we analyse different clustering coefficients. Our goal is to test the validity of two hypotheses: First, we expect the policy to be more efficient if the infectiousness of the disease is small, since the time delay for isolating persons is crucial. Second, due to the implications of the friendship paradox, we expect the policy to be more effective if the clustering coefficient of the underlying contact network is high. We make use of an agent-based network model consisting of three intertwined model parts: an epidemiological SEIR model, a quarantine model and a contact-tracing model. To test the hypotheses, the disease parameters and the clustering coefficient of the underlying contact network are varied. The simulation results show that, indeed, tracing seems to have a slightly larger containment impact for networks with higher clustering, in particular for fast-spreading diseases. Yet, the effects are small compared to the impact of the infectiousness of the disease. Therefore, we find a significant decrease of the policy effectiveness the higher the transmission probability. The latter implies that the containment impact of tracing and isolating contacts becomes more efficient, if supported by additional measures that limit the infection probability or if applied in periods with low negative seasonality effects.
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Affiliation(s)
- Felix Gigler
- Institute of Information Systems Engineering, TU Wien, Favoritenstraße 11, 1050 Vienna, Austria
- AIT Austrian Institute of Technology GmbH, Giefinggasse 4, 1210 Vienna, Austria
| | | | - Martin Bicher
- Institute of Information Systems Engineering, TU Wien, Favoritenstraße 11, 1050 Vienna, Austria
- dwh GmbH, Neustiftgasse 57-59, 1070 Vienna, Austria
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7
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Zhou Y, Guo M. Isolation in the control of epidemic. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2022; 19:10846-10863. [PMID: 36124572 DOI: 10.3934/mbe.2022507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Among many epidemic prevention measures, isolation is an important method to control the spread of infectious disease. Scholars rarely study the impact of isolation on disease dissemination from a quantitative perspective. In this paper, we introduce an isolation ratio and establish the corresponding model. The basic reproductive number and its biological explanation are given. The stability conditions of the disease-free and endemic equilibria are obtained by analyzing its distribution of characteristic values. It is shown that the isolation ratio has an important influence on the basic reproductive number and the stability conditions. Taking the COVID-19 in Wuhan as an example, isolating more than 68% of the population can control the spread of the epidemic. This method can provide precise epidemic prevention strategies for government departments. Numerical simulations verify the effectiveness of the results.
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Affiliation(s)
- Yong Zhou
- College of Science, Wuhan University of Science and Technology, Wuhan 430065, China
| | - Minrui Guo
- College of Energy Engineering, Huanghuai University, Zhumadian 463000, China
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8
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De Cos Guerra O, Castillo Salcines V, Cantarero Prieto D. Are spatial patterns of Covid-19 changing? Spatiotemporal analysis over four waves in the region of Cantabria, Spain. TRANSACTIONS IN GIS : TG 2022; 26:1981-2003. [PMID: 35601792 PMCID: PMC9115338 DOI: 10.1111/tgis.12919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
This research approaches the empirical study of the pandemic from a social science perspective. The main goal is to reveal spatiotemporal changes in Covid-19, at regional scale, using GIS technologies and the emerging three-dimensional bins method. We analyze a case study of the region of Cantabria (northern Spain) based on 29,288 geocoded positive Covid-19 cases in the four waves from the outset in March 2020 to June 2021. Our results suggest three main spatial processes: a reversal in the spatial trend, spreading first followed by contraction in the third and fourth waves; then the reduction of hot spots that represent problematic areas because of high presence of cases and growing trends; and finally, an increase in cold spots. All this generates relevant knowledge to help policy-makers from regional governments to design efficient containment and mitigation strategies. Our research is conducted from a geoprevention perspective, based on the application of targeted measures depending on spatial patterns of Covid-19 in real time. It represents an opportunity to reduce the socioeconomic impact of global containment measures in pandemic management.
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Affiliation(s)
- Olga De Cos Guerra
- Department of Geography, Urban and Regional PlanningUniversidad de CantabriaSantanderSpain
- Research Group on Health Economics and Health Services Management—Marqués de Valdecilla Research Institute (IDIVAL)SantanderSpain
| | - Valentín Castillo Salcines
- Department of Geography, Urban and Regional PlanningUniversidad de CantabriaSantanderSpain
- Research Group on Health Economics and Health Services Management—Marqués de Valdecilla Research Institute (IDIVAL)SantanderSpain
| | - David Cantarero Prieto
- Research Group on Health Economics and Health Services Management—Marqués de Valdecilla Research Institute (IDIVAL)SantanderSpain
- Department of EconomicsUniversidad de CantabriaSantanderSpain
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9
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Coccia M. COVID-19 pandemic over 2020 (withlockdowns) and 2021 (with vaccinations): similar effects for seasonality and environmental factors. ENVIRONMENTAL RESEARCH 2022; 208:112711. [PMID: 35033552 PMCID: PMC8757643 DOI: 10.1016/j.envres.2022.112711] [Citation(s) in RCA: 63] [Impact Index Per Article: 31.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 01/04/2022] [Accepted: 01/06/2022] [Indexed: 05/19/2023]
Abstract
How is the dynamics of Coronavirus Disease 2019 (COVID-19) in 2020 with an health policy of full lockdowns and in 2021 with a vast campaign of vaccinations? The present study confronts this question here by developing a comparative analysis of the effects of COVID-19 pandemic between April-September 2020 (based upon strong control measures) and April-September 2021 (focused on health policy of vaccinations) in Italy, which was one of the first European countries to experience in 2020 high numbers of COVID-19 related infected individuals and deaths and in 2021 Italy has a high share of people fully vaccinated against COVID-19 (>89% of population aged over 12 years in January 2022). Results suggest that over the period under study, the arithmetic mean of confirmed cases, hospitalizations of people and admissions to Intensive Care Units (ICUs) in 2020 and 2021 is significantly equal (p-value<0.01), except fatality rate. Results suggest in December 2021 lower hospitalizations, admissions to ICUs, and fatality rate of COVID-19 than December 2020, though confirmed cases and mortality rates are in 2021 higher than 2020, and likely converging trends in the first quarter of 2022. These findings reveal that COVID-19 pandemic is driven by seasonality and environmental factors that reduce the negative effects in summer period, regardless control measures and/or vaccination campaigns. These findings here can be of benefit to design health policy responses of crisis management considering the growth of COVID-19 pandemic in winter months having reduced temperatures and low solar radiations ( COVID-19 has a behaviour of influenza-like illness). Hence, findings here suggest that strategies of prevention and control of infectious diseases similar to COVID-19 should be set up in summer months and fully implemented during low-solar-irradiation periods (autumn and winter period).
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Affiliation(s)
- Mario Coccia
- CNR, National Research Council of Italy - Via Real Collegio, n. 30 (Collegio Carlo Alberto), 10024, Moncalieri (TO), Italy.
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10
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Zhang S, Wang B, Yin L, Wang S, Hu W, Song X, Feng H. Novel Evidence Showing the Possible Effect of Environmental Variables on COVID-19 Spread. GEOHEALTH 2022; 6:e2021GH000502. [PMID: 35317468 PMCID: PMC8923516 DOI: 10.1029/2021gh000502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 11/09/2021] [Accepted: 11/17/2021] [Indexed: 06/09/2023]
Abstract
Coronavirus disease (COVID-19) remains a serious issue, and the role played by meteorological indicators in the process of virus spread has been a topic of academic discussion. Previous studies reached different conclusions due to inconsistent methods, disparate meteorological indicators, and specific time periods or regions. This manuscript is based on seven daily meteorological indicators in the NCEP reanalysis data set and COVID-19 data repository of Johns Hopkins University from 22 January 2020 to 1 June 2021. Results showed that worldwide average temperature and precipitable water (PW) had the strongest correlation (ρ > 0.9, p < 0.001) with the confirmed COVID-19 cases per day from 22 January to 31 August 2020. From 22 January to 31 August 2020, positive correlations were observed between the temperature/PW and confirmed COVID-19 cases/deaths in the northern hemisphere, whereas negative correlations were recorded in the southern hemisphere. From 1 September to 31 December 2020, the opposite results were observed. Correlations were weak throughout the near full year, and weak negative correlations were detected worldwide (|ρ| < 0.4, p ≤ 0.05); the lag time had no obvious effect. As the latitude increased, the temperature and PW of the maximum confirmed COVID-19 cases/deaths per day generally showed a decreasing trend; the 2020-year fitting functions of the response latitude pattern were verified by the 2021 data. Meteorological indicators, although not a decisive factor, may influence the virus spread by affecting the virus survival rates and enthusiasm of human activities. The temperature or PW threshold suitable for the spread of COVID-19 may increase as the latitude decreases.
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Affiliation(s)
- Sixuan Zhang
- College of Atmospheric ScienceChengdu University of Information TechnologyChengduChina
| | - Bingyun Wang
- College of Atmospheric ScienceChengdu University of Information TechnologyChengduChina
| | - Li Yin
- Panzhihua Central HospitalPanzhihuaChina
| | - Shigong Wang
- College of Atmospheric ScienceChengdu University of Information TechnologyChengduChina
- Zunyi Academician Work CenterZunyiChina
| | - Wendong Hu
- College of Atmospheric ScienceChengdu University of Information TechnologyChengduChina
| | - Xueqian Song
- College of ManagementChengdu University of Information TechnologyChengduChina
| | - Hongmei Feng
- College of Atmospheric ScienceChengdu University of Information TechnologyChengduChina
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11
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Coccia M. Optimal levels of vaccination to reduce COVID-19 infected individuals and deaths: A global analysis. ENVIRONMENTAL RESEARCH 2022; 204:112314. [PMID: 34736923 PMCID: PMC8560189 DOI: 10.1016/j.envres.2021.112314] [Citation(s) in RCA: 95] [Impact Index Per Article: 47.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 10/26/2021] [Accepted: 10/28/2021] [Indexed: 05/14/2023]
Abstract
Coronavirus disease 2019 (COVID-19) continues to be a pandemic threat that is generating a constant state of alert in manifold countries. One of the strategies of defense against infectious diseases (e.g., COVID-19) is the vaccinations that decrease the numbers of infected individuals and deaths. In this context, the optimal level of vaccination for COVID-19 is a basic point to control this pandemic crisis in society. The study here,-using data of doses of vaccines administered per 100 inhabitants, confirmed cases and case fatality ratio of COVID-19 between countries (N=192) from March to May 2021,- clarifies the optimal levels of vaccination for reducing the number of infected individuals and, consequently, the numbers of deaths at global level. Findings reveal that the average level of administering about 80 doses of vaccines per 100 inhabitants between countries can sustain a reduction of confirmed cases and number of deaths. In addition, results suggest that an intensive vaccination campaign in the initial phase of pandemic wave leads to a lower optimal level of doses administered per 100 inhabitants (roughly 47 doses of vaccines administered) for reducing infected individuals; however, the growth of pandemic wave (in May, 2021) moves up the optimal level of vaccines to about 90 doses for reducing the numbers of COVID-19 related infected individuals. All these results here could aid policymakers to prepare optimal strategies directed to a rapid COVID-19 vaccination rollout, before the takeoff of pandemic wave, to lessen negative effects of pandemic crisis on environment and socioeconomic systems.
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Affiliation(s)
- Mario Coccia
- CNR -- National Research Council of Italy, Collegio Carlo Alberto, Via Real Collegio, n. 30, 10024, Moncalieri, TO, Italy.
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12
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Donneau AF, Guillaume M, Bours V, Dandoy M, Darcis G, Desmecht D, Diep AN, Fievez L, Garigliany MM, Gillain N, Husson E, Michel F, Moutschen M, Paridans M, Benoît P, Sabatel C, Saegerman C, Tytgat A, Gillet L, Bureau F. University population-based prospective cohort study of SARS-CoV-2 infection and immunity (SARSSURV-ULiège): a study protocol. BMJ Open 2022; 12:e055721. [PMID: 35078848 PMCID: PMC8795924 DOI: 10.1136/bmjopen-2021-055721] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
INTRODUCTION For a safe and sustainable return to normal functioning of academic activities in higher education, objective-driven testing strategies that are flexible and rapidly adaptable are essential to effectively monitor and respond to new developments of the COVID-19 pandemic. To date, prospective longitudinal research on SARS-CoV-2 antibody testing in saliva and seroprevalence in higher education contexts is substantially lacking, limiting our understanding of COVID-19 prevalence, incidence and nature of the immune response to SARS-CoV-2 at various stages of the infection and vaccination. To address this lack of evidence, a prospective population-based cohort study (SARSSURV-ULiège) has recently been started. METHODS AND ANALYSIS Students (n=1396) and staff members (n=1143) of the University of Liège are followed up over more than 1 year. All participants are required to complete anamnestic, clinical and vaccine hesitancy questionnaires for medical histories and undertaken treatments. Previous proven or suspected SARS-CoV-2 infection is also registered. In phase 1, weekly saliva samples to perform RT-qPCR to detect SARS-CoV-2 and monthly COVID-19 serological rapid test results are collected. Once being positive to either saliva RT-qPCR assay for SARS-CoV-2 presence or to serological test, the participant is invited to enter phase 2. If participants get vaccinated during the study period, they are invited to phase 2. In this second phase, besides weekly saliva self-test, depending on the participants' profiles, both gargle and blood samples are collected to obtain various biological data to measure the presence of neutralising antibodies against SARS-CoV-2, determine the magnitude and the duration of antibody responses over time. ETHICS AND DISSEMINATION The study has received the approval from the University Hospital of Liège Ethics Committee (reference number 2021/96, dated 26 March 2021). Potential protocol amendments will be presented to the Research Ethics Committee. The findings of the present study will be presented at scientific conferences and the results published in peer-review publications. Weekly reports will be submitted to the risk assessment group and the risk management group against COVID-19 of the university to enable a timely public health action if necessary.
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Affiliation(s)
| | - Michèle Guillaume
- Biostatistics Unit - Public Health Department, Liège University, Liège, Belgium
| | - Vincent Bours
- Human Genetics Department, Centre hospitalier universitaire de Liège, Liège, Belgium
| | - Margaux Dandoy
- COVID-19 Platform of University of Liège, Liège University, Liège, Belgium
| | - Gilles Darcis
- Infectious Diseases Department, Centre hospitalier universitaire de Liège, Liège, Belgium
| | - Daniel Desmecht
- Department of Pathology, FARAH, Liège University, Liège, Belgium
| | - Anh Nguyet Diep
- Biostatistics Unit - Public Health Department, Liège University, Liège, Belgium
| | - Laurence Fievez
- Laboratory of Cellular and Molecular Immunology, GIGA Institute, Liège University, Liège, Belgium
| | | | - Nicolas Gillain
- Biostatistics Unit - Public Health Department, Liège University, Liège, Belgium
| | - Eddy Husson
- Biostatistics Unit - Public Health Department, Liège University, Liège, Belgium
| | - Fabienne Michel
- Récolte et Analyse de Données et d'Information d'Utilité Stratégique (RADIUS), Liège University, Liège, Belgium
| | - Michel Moutschen
- Infectious Diseases Department, Centre hospitalier universitaire de Liège, Liège, Belgium
| | | | - Pétre Benoît
- Public Health Department, Liège University, Liège, Belgium
| | - Catherine Sabatel
- Laboratory of Cellular and Molecular Immunology, GIGA Institute, Liège University, Liège, Belgium
| | - Claude Saegerman
- Fundamental and Applied Research for Animal and Health (FARAH) Center, Liège University, Liège, Belgium
| | - Amandine Tytgat
- Laboratory of Cellular and Molecular Immunology, GIGA Institute, Liège University, Liège, Belgium
| | - Laurent Gillet
- Laboratory of Immunology-Vaccinology, FARAH, Liège University, Liège, Belgium
| | - Fabrice Bureau
- Laboratory of Cellular and Molecular Immunology, GIGA Institute, Liège University, Liège, Belgium
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13
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Tao S, Bragazzi NL, Wu J, Mellado B, Kong JD. Harnessing Artificial Intelligence to assess the impact of nonpharmaceutical interventions on the second wave of the Coronavirus Disease 2019 pandemic across the world. Sci Rep 2022; 12:944. [PMID: 35042945 PMCID: PMC8766477 DOI: 10.1038/s41598-021-04731-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Accepted: 12/23/2021] [Indexed: 02/07/2023] Open
Abstract
In the present paper, we aimed to determine the influence of various non-pharmaceutical interventions (NPIs) enforced during the first wave of COVID-19 across countries on the spreading rate of COVID-19 during the second wave. For this purpose, we took into account national-level climatic, environmental, clinical, health, economic, pollution, social, and demographic factors. We estimated the growth of the first and second wave across countries by fitting a logistic model to daily-reported case numbers, up to the first and second epidemic peaks. We estimated the basic and effective (second wave) reproduction numbers across countries. Next, we used a random forest algorithm to study the association between the growth rate of the second wave and NPIs as well as pre-existing country-specific characteristics. Lastly, we compared the growth rate of the first and second waves of COVID-19. The top three factors associated with the growth of the second wave were body mass index, the number of days that the government sets restrictions on requiring facial coverings outside the home at all times, and restrictions on gatherings of 10 people or less. Artificial intelligence techniques can help scholars as well as decision and policy-makers estimate the effectiveness of public health policies, and implement "smart" interventions, which are as efficacious as stringent ones.
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Affiliation(s)
| | - Nicola Luigi Bragazzi
- Africa-Canada Artificial Intelligence and Data Innovation Consortium, Department of Mathematics and Statistics, York University, Toronto, ON, M3J 1P3, Canada
| | - Jianhong Wu
- Africa-Canada Artificial Intelligence and Data Innovation Consortium, Department of Mathematics and Statistics, York University, Toronto, ON, M3J 1P3, Canada
| | - Bruce Mellado
- School of Physics, Institute for Collider Particle Physics, University of the Witwatersrand, Johannesburg, South Africa
- iThemba LABS, National Research Foundation, Somerset West, South Africa
| | - Jude Dzevela Kong
- Africa-Canada Artificial Intelligence and Data Innovation Consortium, Department of Mathematics and Statistics, York University, Toronto, ON, M3J 1P3, Canada.
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14
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Markovic S, Rodic A, Salom I, Milicevic O, Djordjevic M, Djordjevic M. COVID-19 severity determinants inferred through ecological and epidemiological modeling. One Health 2021; 13:100355. [PMID: 34869819 PMCID: PMC8626896 DOI: 10.1016/j.onehlt.2021.100355] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Revised: 11/25/2021] [Accepted: 11/26/2021] [Indexed: 12/23/2022] Open
Abstract
Understanding variations in the severity of infectious diseases is essential for planning proper mitigation strategies. Determinants of COVID-19 clinical severity are commonly assessed by transverse or longitudinal studies of the fatality counts. However, the fatality counts depend both on disease clinical severity and transmissibility, as more infected also lead to more deaths. Instead, we use epidemiological modeling to propose a disease severity measure that accounts for the underlying disease dynamics. The measure corresponds to the ratio of population-averaged mortality and recovery rates (m/r), is independent of the disease transmission dynamics (i.e., the basic reproduction number), and has a direct mechanistic interpretation. We use this measure to assess demographic, medical, meteorological, and environmental factors associated with the disease severity. For this, we employ an ecological regression study design and analyze different US states during the first disease outbreak. Principal Component Analysis, followed by univariate, and multivariate analyses based on machine learning techniques, is used for selecting important predictors. The usefulness of the introduced severity measure and the validity of the approach are confirmed by the fact that, without using prior knowledge from clinical studies, we recover the main significant predictors known to influence disease severity, in particular age, chronic diseases, and racial factors. Additionally, we identify long-term pollution exposure and population density as not widely recognized (though for the pollution previously hypothesized) significant predictors. The proposed measure is applicable for inferring severity determinants not only of COVID-19 but also of other infectious diseases, and the obtained results may aid a better understanding of the present and future epidemics. Our holistic, systematic investigation of disease severity at the human-environment intersection by epidemiological dynamical modeling and machine learning ecological regressions is aligned with the One Health approach. The obtained results emphasize a syndemic nature of COVID-19 risks.
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Affiliation(s)
- Sofija Markovic
- Quantitative Biology Group, Faculty of Biology, University of Belgrade, Serbia
| | - Andjela Rodic
- Quantitative Biology Group, Faculty of Biology, University of Belgrade, Serbia
| | - Igor Salom
- Institute of Physics Belgrade, National Institute of the Republic of Serbia, University of Belgrade, Serbia
| | - Ognjen Milicevic
- Department for Medical Statistics and Informatics, School of Medicine, University of Belgrade, Serbia
| | - Magdalena Djordjevic
- Institute of Physics Belgrade, National Institute of the Republic of Serbia, University of Belgrade, Serbia
| | - Marko Djordjevic
- Quantitative Biology Group, Faculty of Biology, University of Belgrade, Serbia
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15
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Machado BAS, Hodel KVS, Fonseca LMDS, Mascarenhas LAB, Andrade LPCDS, Rocha VPC, Soares MBP, Berglund P, Duthie MS, Reed SG, Badaró R. The Importance of RNA-Based Vaccines in the Fight against COVID-19: An Overview. Vaccines (Basel) 2021; 9:1345. [PMID: 34835276 PMCID: PMC8623509 DOI: 10.3390/vaccines9111345] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 11/02/2021] [Accepted: 11/15/2021] [Indexed: 12/23/2022] Open
Abstract
In recent years, vaccine development using ribonucleic acid (RNA) has become the most promising and studied approach to produce safe and effective new vaccines, not only for prophylaxis but also as a treatment. The use of messenger RNA (mRNA) as an immunogenic has several advantages to vaccine development compared to other platforms, such as lower coast, the absence of cell cultures, and the possibility to combine different targets. During the COVID-19 pandemic, the use of mRNA as a vaccine became more relevant; two out of the four most widely applied vaccines against COVID-19 in the world are based on this platform. However, even though it presents advantages for vaccine application, mRNA technology faces several pivotal challenges to improve mRNA stability, delivery, and the potential to generate the related protein needed to induce a humoral- and T-cell-mediated immune response. The application of mRNA to vaccine development emerged as a powerful tool to fight against cancer and non-infectious and infectious diseases, for example, and represents a relevant research field for future decades. Based on these advantages, this review emphasizes mRNA and self-amplifying RNA (saRNA) for vaccine development, mainly to fight against COVID-19, together with the challenges related to this approach.
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Affiliation(s)
- Bruna Aparecida Souza Machado
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
| | - Katharine Valéria Saraiva Hodel
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
| | - Larissa Moraes dos Santos Fonseca
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
| | - Luís Alberto Brêda Mascarenhas
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
| | - Leone Peter Correia da Silva Andrade
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
| | - Vinícius Pinto Costa Rocha
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
| | - Milena Botelho Pereira Soares
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
- Gonçalo Moniz Institute, Oswaldo Cruz Foundation (IGM-FIOCRUZ/BA), Salvador 40296-710, Brazil
| | - Peter Berglund
- HDT Bio, 1616 Eastlake Ave E, Seattle, WA 98102, USA; (P.B.); (M.S.D.); (S.G.R.)
| | - Malcolm S. Duthie
- HDT Bio, 1616 Eastlake Ave E, Seattle, WA 98102, USA; (P.B.); (M.S.D.); (S.G.R.)
| | - Steven G. Reed
- HDT Bio, 1616 Eastlake Ave E, Seattle, WA 98102, USA; (P.B.); (M.S.D.); (S.G.R.)
| | - Roberto Badaró
- SENAI Institute of Innovation (ISI) in Health Advanced Systems (CIMATEC ISI SAS), University Center SENAI/CIMATEC, Salvador 41650-010, Brazil; (K.V.S.H.); (L.M.d.S.F.); (L.A.B.M.); (L.P.C.d.S.A.); (V.P.C.R.); (M.B.P.S.); (R.B.)
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16
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Busk PK, Kristiansen TB, Engsig-Karup A. Assessment of the National Test Strategy on the Development of the COVID-19 Pandemic in Denmark. EPIDEMIOLOGIA 2021; 2:540-552. [PMID: 36417215 PMCID: PMC9620886 DOI: 10.3390/epidemiologia2040037] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 11/02/2021] [Accepted: 11/04/2021] [Indexed: 12/15/2022] Open
Abstract
During the COVID-19 pandemic, Denmark has pursued a mass testing strategy culminating in the testing of 12.167 individuals per 100,000 inhabitants per day during the spring of 2021. The strategy included free access to COVID-19 testing, and since 2021, compulsory documentation for negative tests or vaccination has been required for access to workplace, educational institutions, restaurants, and many other places. Testing and subsequent isolation if testing was positive were voluntary. The present study provides an analysis of whether testing frequency in Denmark showed any correlation to hospitalizations throughout the relevant stages of the pandemic. Mass testing was found not to correlate significantly with the number of hospitalizations during the pandemic. Interestingly, during the highest level of testing in spring 2021 the fraction of positive tests increased slightly; thus, the Danish mass testing strategy, at its best, failed to reduce the prevalence of COVID-19. Furthermore, the relationship between positives in antigen testing and in rt-PCR testing indicated that many patients were not tested early in their infection when the risk of transmission was at the highest. In conclusion, the Danish mass testing strategy for COVID-19 does not appear to have a detectable correlation to the number of hospitalizations due to COVID-19.
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Affiliation(s)
- Peter Kamp Busk
- Department of Science and Environment, Roskilde University, 4000 Roskilde, Denmark
| | | | - Allan Engsig-Karup
- Department of Applied Mathematics and Computer Science, Technical University of Denmark, DK-2880 Kgs. Lyngby, Denmark;
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17
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Bontempi E, Coccia M. International trade as critical parameter of COVID-19 spread that outclasses demographic, economic, environmental, and pollution factors. ENVIRONMENTAL RESEARCH 2021; 201:111514. [PMID: 34139222 PMCID: PMC8204848 DOI: 10.1016/j.envres.2021.111514] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 05/15/2021] [Accepted: 06/05/2021] [Indexed: 05/19/2023]
Abstract
The novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that caused the Coronavirus Disease 2019 (COVID-19), generating high numbers of COVID-19 related infected individuals and deaths, is still circulating in 2021 with new variants of the coronavirus, such that the state of emergency remains in manifold countries. Currently, there is still a lack of a full understanding of the factors determining the COVID-19 diffusion that clarify the causes of the variability of infections across different provinces and regions within countries. The main goal of this study is to explain new and main determinants underlying the diffusion of COVID-19 in society. This study focuses on international trade because this factor, in a globalized world, can synthetize different drivers of virus spread, such as mobility patterns, economic potentialities, and social interactions of an investigated areas. A case study research is performed on 107 provinces of Italy, one of the first countries to experience a rapid increase in confirmed cases and deaths. Statistical analyses from March 2020 to February 2021 suggest that total import and export of provinces has a high association with confirmed cases over time (average r > 0.78, p-value <.001). Overall, then, this study suggests total import and export as complex indicator of COVID-19 transmission dynamics that outclasses other common parameters used to justify the COVID-19 spread, given by economic, demographic, environmental, and climate factors. In addition, this study proposes, for the first time, a time-dependent correlation analysis between trade data and COVID-19 infection cases to explain the relation between confirmed cases and social interactions that are a main source of the diffusion of SARS-CoV-2 and subsequent negative impact in society. These novel findings have main theoretical and practical implications directed to include a new parameter in modelling of the diffusion of COVID-19 pandemic to support effective policy responses of crisis management directed to constrain the impact of COVID-19 pandemic and similar infectious diseases in society.
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Affiliation(s)
- E Bontempi
- INSTM and Chemistry for Technologies Laboratory, University of Brescia, Via Branze 38, 25123, Brescia, Italy.
| | - M Coccia
- CNR -- National Research Council of Italy, Via Real Collegio, N. 30, (Collegio Carlo Alberto), 10024, Moncalieri, TO, Italy.
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18
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Wang N, Ferhan AR, Yoon BK, Jackman JA, Cho NJ, Majima T. Chemical design principles of next-generation antiviral surface coatings. Chem Soc Rev 2021; 50:9741-9765. [PMID: 34259262 DOI: 10.1039/d1cs00317h] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The ongoing coronavirus disease 2019 (COVID-19) pandemic has accelerated efforts to develop high-performance antiviral surface coatings while highlighting the need to build a strong mechanistic understanding of the chemical design principles that underpin antiviral surface coatings. Herein, we critically summarize the latest efforts to develop antiviral surface coatings that exhibit virus-inactivating functions through disrupting lipid envelopes or protein capsids. Particular attention is focused on how cutting-edge advances in material science are being applied to engineer antiviral surface coatings with tailored molecular-level properties to inhibit membrane-enveloped and non-enveloped viruses. Key topics covered include surfaces functionalized with organic and inorganic compounds and nanoparticles to inhibit viruses, and self-cleaning surfaces that incorporate photocatalysts and triplet photosensitizers. Application examples to stop COVID-19 are also introduced and demonstrate how the integration of chemical design principles and advanced material fabrication strategies are leading to next-generation surface coatings that can help thwart viral pandemics and other infectious disease threats.
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Affiliation(s)
- Nan Wang
- Hubei Key Laboratory of Bioinorganic Chemistry & Materia Medica, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, Wuhan 430074, China.
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19
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Jabłońska K, Aballéa S, Toumi M. The real-life impact of vaccination on COVID-19 mortality in Europe and Israel. Public Health 2021; 198:230-237. [PMID: 34482101 PMCID: PMC8413007 DOI: 10.1016/j.puhe.2021.07.037] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 07/14/2021] [Accepted: 07/26/2021] [Indexed: 12/15/2022]
Abstract
OBJECTIVES This study aimed at estimating the real-life impact of vaccination on COVID-19 mortality, with adjustment for SARS-CoV-2 variants spread and other factors across Europe and Israel. STUDY DESIGN Time series analysis. METHODS Time series analysis of the daily number of COVID-19 deaths was performed using non-linear Poisson mixed regression models. Variables such as variants' frequency, demographics, climate, health, and mobility characteristics of thirty-two countries between January 2020 and April 2021 were considered as potentially relevant adjustment factors. RESULTS The analysis revealed that vaccination efficacy in terms of protection against deaths was 72%, with a lower reduction of the number of deaths for B.1.1.7 vs non-B.1.1.7 variants (70% and 78%, respectively). Other factors significantly related to mortality were arrivals at airports, mobility change from the prepandemic level, and temperature. CONCLUSIONS Our study confirms a strong effectiveness of COVID-19 vaccination based on real-life public data, although lower than expected from clinical trials. This suggests the absence of indirect protection for non-vaccinated individuals. Results also show that vaccination effectiveness against mortality associated with the B.1.1.7 variant is slightly lower than that with other variants. Lastly, this analysis confirms the role of mobility reduction, within and between countries, as an effective way to reduce COVID-19 mortality and suggests the possibility of seasonal variations in COVID-19 incidence.
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Affiliation(s)
| | - Samuel Aballéa
- Creativ-Ceutical, Westblaak 90, Rotterdam, 3012KM, the Netherlands.
| | - Mondher Toumi
- Faculty of Medicine, Public Health Department, Aix-Marseille University, 27 Boulevard Jean Moulin, Marseille, 13005, France.
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20
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The prediction and analysis of COVID-19 epidemic trend by combining LSTM and Markov method. Sci Rep 2021; 11:17421. [PMID: 34465820 PMCID: PMC8408143 DOI: 10.1038/s41598-021-97037-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 08/17/2021] [Indexed: 12/20/2022] Open
Abstract
Corona Virus Disease 2019 (COVID-19) has spread rapidly to countries all around the world from the end of 2019, which caused a great impact on global health and has had a huge impact on many countries. Since there is still no effective treatment, it is essential to making effective predictions for relevant departments to make responses and arrangements in advance. Under the limited data, the prediction error of LSTM model will increase over time, and its prone to big bias for medium- and long-term prediction. To overcome this problem, our study proposed a LSTM-Markov model, which uses Markov model to reduce the prediction error of LSTM model. Based on confirmed case data in the US, Britain, Brazil and Russia, we calculated the training errors of LSTM and constructed the probability transfer matrix of the Markov model by the errors. And finally, the prediction results were obtained by combining the output data of LSTM model with the prediction errors of Markov Model. The results show that: compared with the prediction results of the classical LSTM model, the average prediction error of LSTM-Markov is reduced by more than 75%, and the RMSE is reduced by more than 60%, the mean [Formula: see text] of LSTM-Markov is over 0.96. All those indicators demonstrate that the prediction accuracy of proposed LSTM-Markov model is higher than that of the LSTM model to reach more accurate prediction of COVID-19.
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21
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Kerr GH, Badr HS, Gardner LM, Perez-Saez J, Zaitchik BF. Associations between meteorology and COVID-19 in early studies: Inconsistencies, uncertainties, and recommendations. One Health 2021; 12:100225. [PMID: 33585669 PMCID: PMC7871781 DOI: 10.1016/j.onehlt.2021.100225] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 01/06/2021] [Accepted: 02/04/2021] [Indexed: 12/12/2022] Open
Abstract
Meteorological variables, such as the ambient temperature and humidity, play a well-established role in the seasonal transmission of respiratory viruses and influenza in temperate climates. Since the onset of the novel coronavirus disease 2019 (COVID-19) pandemic, a growing body of literature has attempted to characterize the sensitivity of COVID-19 to meteorological factors and thus understand how changes in the weather and seasonality may impede COVID-19 transmission. Here we select a subset of this literature, summarize the diversity in these studies' scopes and methodologies, and show the lack of consensus in their conclusions on the roles of temperature, humidity, and other meteorological factors on COVID-19 transmission dynamics. We discuss how several aspects of studies' methodologies may challenge direct comparisons across studies and inflate the importance of meteorological factors on COVID-19 transmission. We further comment on outstanding challenges for this area of research and how future studies might overcome them by carefully considering robust modeling approaches, adjusting for mediating and covariate effects, and choosing appropriate scales of analysis.
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Affiliation(s)
- Gaige Hunter Kerr
- Department of Occupational and Environmental Health, George Washington University, Washington, DC, USA
| | - Hamada S. Badr
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, USA
| | - Lauren M. Gardner
- Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Javier Perez-Saez
- Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA
| | - Benjamin F. Zaitchik
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, USA
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22
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Coccia M. The impact of first and second wave of the COVID-19 pandemic in society: comparative analysis to support control measures to cope with negative effects of future infectious diseases. ENVIRONMENTAL RESEARCH 2021; 197:111099. [PMID: 33819476 PMCID: PMC8017951 DOI: 10.1016/j.envres.2021.111099] [Citation(s) in RCA: 99] [Impact Index Per Article: 33.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 03/08/2021] [Accepted: 03/26/2021] [Indexed: 05/07/2023]
Abstract
The goal of this study is a comparative analysis of the first and second wave of the Coronavirus disease 2019 (COVID-19) to assess the impact on health of people for designing effective policy responses to constrain negative effects of future pandemic waves of COVID-19 and similar infectious diseases in society. The research here focuses on a case study of Italy, one of the first countries to experience a rapid increase in numbers of COVID-19 related infected individuals and deaths. Statistical analyses, based on daily data from February 2020 to February 2021, suggest that the first wave of COVID-19 pandemic in Italy had a high negative impact on health of people over February-May 2020 period; after that, negative effects declined from June 2020 onwards. Second wave of COVID-19 pandemic from August 2020 to February 2021 had a growing incidence of confirmed cases also associated with variants of coronavirus, whereas admissions to Intensive Care Units and total deaths had lower levels compared to first wave of COVID-19. Lessons learned of this comparative analysis between first and second wave of the COVID-19 pandemic in Italy can be generalized in similar geo-economic areas to support effective policy responses of crisis management to constrain the negative impact on health of people of recurring waves of COVID-19 pandemic and similar infectious diseases in future.
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Affiliation(s)
- Mario Coccia
- CNR -- National Research Council of Italy, Via Real Collegio, N. 30 (Collegio Carlo Alberto), 10024, Moncalieri (TO), Italy.
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23
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Chillon SA, Millan M, Aramendia I, Fernandez-Gamiz U, Zulueta E, Mendaza-Sagastizabal X. Natural Ventilation Characterization in a Classroom under Different Scenarios. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:5425. [PMID: 34069502 PMCID: PMC8160776 DOI: 10.3390/ijerph18105425] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/13/2021] [Accepted: 05/17/2021] [Indexed: 12/23/2022]
Abstract
The COVID-19 pandemic has pointed to the need to increase our knowledge in fields related to human breathing. In the present study, temperature, relative humidity, carbon dioxide (CO2) concentration, and median particle size diameter measurements were taken into account. These parameters were analyzed in a computer classroom with 15 subjects during a normal 90-minute class; all the subjects wore surgical masks. For measurements, Arduino YUN, Arduino UNO, and APS-3321 devices were used. Natural ventilation efficiency was checked in two different ventilation scenarios: only windows open and windows and doors open. The results show how ventilation affects the temperature, CO2 concentration, and median particle diameter size parameters. By contrast, the relative humidity depends more on the outdoor meteorological conditions. Both ventilation scenarios tend to create the same room conditions in terms of temperature, humidity, CO2 concentration, and particle size. Additionally, the evolution of CO2 concentration as well as the particle size distribution along the time was studied. Finally, the particulate matter (PM2.5) was investigated together with particle concentration. Both parameters showed a similar trend during the time of the experiments.
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Affiliation(s)
- Sergio A. Chillon
- Nuclear Engineering and Fluid Mechanics Department, University of the Basque Country, UPV/EHU, Nieves Cano 12, Vitoria-Gasteiz, 01006 Araba, Spain; (S.A.C.); (I.A.); (X.M.-S.)
| | - Mikel Millan
- System Engineering and Automation Control Department, University of the Basque Country, UPV/EHU, Nieves Cano 12, Vitoria-Gasteiz, 01006 Araba, Spain; (M.M.); (E.Z.)
| | - Iñigo Aramendia
- Nuclear Engineering and Fluid Mechanics Department, University of the Basque Country, UPV/EHU, Nieves Cano 12, Vitoria-Gasteiz, 01006 Araba, Spain; (S.A.C.); (I.A.); (X.M.-S.)
| | - Unai Fernandez-Gamiz
- Nuclear Engineering and Fluid Mechanics Department, University of the Basque Country, UPV/EHU, Nieves Cano 12, Vitoria-Gasteiz, 01006 Araba, Spain; (S.A.C.); (I.A.); (X.M.-S.)
| | - Ekaitz Zulueta
- System Engineering and Automation Control Department, University of the Basque Country, UPV/EHU, Nieves Cano 12, Vitoria-Gasteiz, 01006 Araba, Spain; (M.M.); (E.Z.)
| | - Xabier Mendaza-Sagastizabal
- Nuclear Engineering and Fluid Mechanics Department, University of the Basque Country, UPV/EHU, Nieves Cano 12, Vitoria-Gasteiz, 01006 Araba, Spain; (S.A.C.); (I.A.); (X.M.-S.)
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Abstract
Background: The main purpose of this research is to describe the mathematical asymmetric patterns of susceptible, infectious, or recovered (SIR) model equation application in the light of coronavirus disease 2019 (COVID-19) skewness patterns worldwide. Methods: The research modeled severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) spreading and dissemination patterns sensitivity by redesigning time series data extraction of daily new cases in terms of deviation consistency concerning variables that sustain COVID-19 transmission. The approach opened a new scenario where seasonality forcing behavior was introduced to understand SARS-COV-2 non-linear dynamics due to heterogeneity and confounding epidemics scenarios. Results: The main research results are the elucidation of three birth- and death-forced seasonality persistence phases that can explain COVID-19 skew patterns worldwide. They are presented in the following order: (1) the environmental variables (Earth seasons and atmospheric conditions); (2) health policies and adult learning education (HPALE) interventions; (3) urban spaces (local indoor and outdoor spaces for transit and social-cultural interactions, public or private, with natural physical features (river, lake, terrain). Conclusions: Three forced seasonality phases (positive to negative skew) phases were pointed out as a theoretical framework to explain uncertainty found in the predictive SIR model equations that might diverge in outcomes expected to express the disease’s behaviour.
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The collateral fallout of COVID19 lockdown on patients with head injury from north-west India. Acta Neurochir (Wien) 2021; 163:1053-1060. [PMID: 33475830 DOI: 10.1007/s00701-021-04723-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Accepted: 01/17/2021] [Indexed: 12/30/2022]
Abstract
BACKGROUND The COVID19 lockdown has altered the dynamics of living. Its collateral fallout on head injury care has not been studied in detail, especially from low- and middle-income countries, possibly overwhelmed more than developed nations. Here, we analyze the effects of COVID19 restrictions on head injury patients in a high-volume Indian referral trauma center. METHODS From the prospective trauma registry, clinico-epidemiological and radiological parameters of patients managed during 190 days before and 190 days during COVID19 phases were studied. As an indicator of care, the inpatient mortality of patients with severe HI was also compared with appropriate statistical analyses. RESULTS Of the total 3372 patients, there were 83 head injury admissions per week before COVID19 restrictions, which decreased to 33 every week (60% drop) during the lock phases and stabilized at 46 per week during the unlock phases. COVID19 restrictions caused a significant increase in the proportion of patients arriving directly without resuscitation at peripheral centers and later than 6 h of injury. Though the most common mechanism was vehicular, a relative increase in the proportion of assaults was noted during COVID19. There was no change in the distribution of mild, moderate, and severe injuries. Despite a decrease in the percentage of patients with systemic illnesses, severe head injury mortality was significantly more during the lock phases than before COVID19 (59% vs. 47%, p = 0.02). CONCLUSIONS COVID19 restrictions have amplified the already delayed admission among patients of head injury from north-west India. The severe head injury mortality was significantly greater during lock phases than before COVID19, highlighting the collateral fallout of lockdown. Pandemic control measures in the future should not ignore the concerns of trauma emergency care.
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The COVID-19 pandemic is deepening the health crisis in South Kivu, Democratic Republic of Congo. Int J Infect Dis 2021; 105:716-720. [PMID: 33744480 PMCID: PMC7968148 DOI: 10.1016/j.ijid.2021.03.043] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 03/10/2021] [Accepted: 03/12/2021] [Indexed: 12/24/2022] Open
Abstract
OBJECTIVE The outbreak of coronavirus disease 2019 (COVID-19) in South Kivu, Democratic Republic of Congo raised concerns regarding additional morbidity and mortality. Updating these indicators before a second wave is essential in order to prepare for additional help. METHODS From mid-May to mid-December 2020, weekly surveys were undertaken in sampled streets from 10 health areas to quantify the use of barrier measures, and interview pedestrians about sickness and deaths in their households. Crude death rates (CDRs) were estimated. RESULTS Minimal use or no use of face masks was observed in at least half of the streets. From May to December 2020, the number of suspected cases of COVID-19 increased six-fold (P < 0.05). Of deaths within 30 days preceding the interviews, 20% were considered to be related to COVID-19. The monthly CDRs at the beginning and end of the study were approximately 5 and 25 per 1000 population, respectively (P < 0.05); that is, annual CDRs of 60 and 260 per 1000 population, respectively. Thus, during the first wave, the estimated mortality rate increased by 50% compared with previous years, and increased at least four-fold by the end of 2020. CONCLUSION Despite possible overestimations, the excess mortality in South Kivu is extremely concerning. This crisis calls for a rapid response and increased humanitarian assistance.
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Rho Y, Cho DY, Son Y, Lee YJ, Kim JW, Lee HJ, You SC, Park RW, Lee JY. COVID-19 International Collaborative Research by the Health Insurance Review and Assessment Service Using Its Nationwide Real-world Data: Database, Outcomes, and Implications. J Prev Med Public Health 2021; 54:8-16. [PMID: 33618494 PMCID: PMC7939755 DOI: 10.3961/jpmph.20.616] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 01/18/2021] [Indexed: 12/11/2022] Open
Abstract
This article aims to introduce the inception and operation of the COVID-19 International Collaborative Research Project, the world’s first coronavirus disease 2019 (COVID-19) open data project for research, along with its dataset and research method, and to discuss relevant considerations for collaborative research using nationwide real-world data (RWD). COVID-19 has spread across the world since early 2020, becoming a serious global health threat to life, safety, and social and economic activities. However, insufficient RWD from patients was available to help clinicians efficiently diagnose and treat patients with COVID-19, or to provide necessary information to the government for policy-making. Countries that saw a rapid surge of infections had to focus on leveraging medical professionals to treat patients, and the circumstances made it even more difficult to promptly use COVID-19 RWD. Against this backdrop, the Health Insurance Review and Assessment Service (HIRA) of Korea decided to open its COVID-19 RWD collected through Korea’s universal health insurance program, under the title of the COVID-19 International Collaborative Research Project. The dataset, consisting of 476 508 claim statements from 234 427 patients (7590 confirmed cases) and 18 691 318 claim statements of the same patients for the previous 3 years, was established and hosted on HIRA’s in-house server. Researchers who applied to participate in the project uploaded analysis code on the platform prepared by HIRA, and HIRA conducted the analysis and provided outcome values. As of November 2020, analyses have been completed for 129 research projects, which have been published or are in the process of being published in prestigious journals.
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Affiliation(s)
- Yeunsook Rho
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea
| | - Do Yeon Cho
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea
| | - Yejin Son
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea
| | - Yu Jin Lee
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea
| | - Ji Woo Kim
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea
| | - Hye Jin Lee
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea
| | - Seng Chan You
- Department of Biomedical Informatics, Ajou University School of Medicine, Suwon, Korea
| | - Rae Woong Park
- Department of Biomedical Informatics, Ajou University School of Medicine, Suwon, Korea
| | - Jin Yong Lee
- HIRA Research Institute, Health Insurance Review and Assessment Service, Wonju, Korea.,Public Healthcare Center, Seoul National University Hospital, Seoul, Korea.,Deparment of Health Policy and Management, Seoul National University College of Medicine, Seoul, Korea
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