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Samukha V, Fantasma F, D’Urso G, Caprari C, De Felice V, Saviano G, Lauro G, Casapullo A, Chini MG, Bifulco G, Iorizzi M. NMR Metabolomics and Chemometrics of Commercial Varieties of Phaseolus vulgaris L. Seeds from Italy and In Vitro Antioxidant and Antifungal Activity. PLANTS (BASEL, SWITZERLAND) 2024; 13:227. [PMID: 38256780 PMCID: PMC10820859 DOI: 10.3390/plants13020227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 12/22/2023] [Accepted: 01/08/2024] [Indexed: 01/24/2024]
Abstract
The metabolite fingerprinting of four Italian commercial bean seed cultivars, i.e., Phaseolus Cannellino (PCANN), Controne (PCON), Vellutina (PVEL), and Occhio Nero (PON), were investigated by Nuclear Magnetic Resonance (NMR) spectroscopy and multivariate data analysis. The hydroalcoholic and organic extract analysis disclosed more than 32 metabolites from various classes, i.e., carbohydrates, amino acids, organic acids, nucleosides, alkaloids, and fatty acids. PVEL, PCON, and PCANN varieties displayed similar chemical profiles, albeit with somewhat different quantitative results. The PON metabolite composition was slightly different from the others; it lacked GABA and pipecolic acid, featured a higher percentage of malic acid than the other samples, and showed quantitative variations of several metabolites. The lipophilic extracts from all four cultivars demonstrated the presence of omega-3 and omega-6 unsaturated fatty acids. After the determination of the total phenolic, flavonoids, and condensed tannins content, in vitro antioxidant activity was then assessed using the DPPH scavenging activity, the ABTS scavenging assay, and ferric-reducing antioxidant power (FRAP). Compared to non-dark seeds (PCON, PCANN), brown seeds (PVEL, PON) featured a higher antioxidant capacity. Lastly, only PON extract showed in vitro antifungal activity against the sclerotia growth of S. rolfsii, by inhibiting halo growth by 75%.
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Affiliation(s)
- Vadym Samukha
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
| | - Francesca Fantasma
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
| | - Gilda D’Urso
- Department of Pharmacy, University of Salerno, Via Giovanni Paolo II 132, 84084 Salerno, Italy; (G.D.); (G.L.); (A.C.)
| | - Claudio Caprari
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
| | - Vincenzo De Felice
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
| | - Gabriella Saviano
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
| | - Gianluigi Lauro
- Department of Pharmacy, University of Salerno, Via Giovanni Paolo II 132, 84084 Salerno, Italy; (G.D.); (G.L.); (A.C.)
| | - Agostino Casapullo
- Department of Pharmacy, University of Salerno, Via Giovanni Paolo II 132, 84084 Salerno, Italy; (G.D.); (G.L.); (A.C.)
| | - Maria Giovanna Chini
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
| | - Giuseppe Bifulco
- Department of Pharmacy, University of Salerno, Via Giovanni Paolo II 132, 84084 Salerno, Italy; (G.D.); (G.L.); (A.C.)
| | - Maria Iorizzi
- Department of Biosciences and Territory, University of Molise, Contrada Fonte Lappone, 86090 Isernia, Italy; (V.S.); (F.F.); (C.C.); (V.D.F.); (G.S.); (M.I.)
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Van de Waal DB, White LA, Everett R, Asik L, Borer ET, Frenken T, González AL, Paseka R, Seabloom EW, Strauss AT, Peace A. Reconciling contrasting effects of nitrogen on host immunity and pathogen transmission using stoichiometric models. Ecology 2023; 104:e4170. [PMID: 37755721 DOI: 10.1002/ecy.4170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 06/10/2023] [Accepted: 07/29/2023] [Indexed: 09/28/2023]
Abstract
Hosts rely on the availability of nutrients for growth, and for defense against pathogens. At the same time, changes in host nutrition can alter the dynamics of pathogens that rely on their host for reproduction. For primary producer hosts, enhanced nutrient loads may increase host biomass or pathogen reproduction, promoting faster density-dependent pathogen transmission. However, the effect of elevated nutrients may be reduced if hosts allocate a growth-limiting nutrient to pathogen defense. In canonical disease models, transmission is not a function of nutrient availability. Yet, including nutrient availability is necessary to mechanistically understand the response of infection to changes in the environment. Here, we explore the implications of nutrient-mediated pathogen infectivity and host immunity on infection outcomes. We developed a stoichiometric disease model that explicitly integrates the contrasting dependencies of pathogen infectivity and host immunity on nitrogen (N) and parameterized it for an algal-host system. Our findings reveal dynamic shifts in host biomass build-up, pathogen prevalence, and the force of infection along N supply gradients with N-mediated host infectivity and immunity, compared with a model in which the transmission rate was fixed. We show contrasting responses in pathogen performance with increasing N supply between N-mediated infectivity and N-mediated immunity, revealing an optimum for pathogen transmission at intermediate N supply. This was caused by N limitation of the pathogen at a low N supply and by pathogen suppression via enhanced host immunity at a high N supply. By integrating both nutrient-mediated pathogen infectivity and host immunity into a stoichiometric model, we provide a theoretical framework that is a first step in reconciling the contrasting role nutrients can have on host-pathogen dynamics.
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Affiliation(s)
- Dedmer B Van de Waal
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Lauren A White
- National Socio-Environmental Synthesis Center (SESYNC), University of Maryland, Annapolis, Maryland, USA
| | - Rebecca Everett
- Department of Mathematics and Statistics, Haverford College, Haverford, Pennsylvania, USA
| | - Lale Asik
- Department of Mathematics and Statistics, University of the Incarnate Word, San Antonio, Texas, USA
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
| | - Elizabeth T Borer
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, USA
| | - Thijs Frenken
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands
- Great Lakes Institute for Environmental Research (GLIER), University of Windsor, Windsor, Ontario, Canada
| | - Angélica L González
- Department of Biology and Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, USA
| | - Rachel Paseka
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, USA
| | - Eric W Seabloom
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, USA
| | - Alexander T Strauss
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, USA
- Odum School of Ecology, University of Georgia, Athens, Georgia, USA
- River Basin Center, University of Georgia, Athens, Georgia, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, Georgia, USA
| | - Angela Peace
- Department of Mathematics and Statistics, Texas Tech University, Lubbock, Texas, USA
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Hazra A, Ghosh S, Naskar S, Rahaman P, Roy C, Kundu A, Chaudhuri RK, Chakraborti D. Global transcriptome analysis reveals fungal disease responsive core gene regulatory landscape in tea. Sci Rep 2023; 13:17186. [PMID: 37821523 PMCID: PMC10567763 DOI: 10.1038/s41598-023-44163-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 10/04/2023] [Indexed: 10/13/2023] Open
Abstract
Fungal infections are the inevitable limiting factor for productivity of tea. Transcriptome reprogramming recruits multiple regulatory pathways during pathogen infection. A comprehensive meta-analysis was performed utilizing previously reported, well-replicated transcriptomic datasets from seven fungal diseases of tea. The study identified a cumulative set of 18,517 differentially expressed genes (DEGs) in tea, implicated in several functional clusters, including the MAPK signaling pathway, transcriptional regulation, and the biosynthesis of phenylpropanoids. Gene set enrichment analyses under each pathogen stress elucidated that DEGs were involved in ethylene metabolism, secondary metabolism, receptor kinase activity, and various reactive oxygen species detoxification enzyme activities. Expressional fold change of combined datasets highlighting 2258 meta-DEGs shared a common transcriptomic response upon fungal stress in tea. Pervasive duplication events caused biotic stress-responsive core DEGs to appear in multiple copies throughout the tea genome. The co-expression network of meta-DEGs in multiple modules demonstrated the coordination of appropriate pathways, most of which involved cell wall organization. The functional coordination was controlled by a number of hub genes and miRNAs, leading to pathogenic resistance or susceptibility. This first-of-its-kind meta-analysis of host-pathogen interaction generated consensus candidate loci as molecular signatures, which can be associated with future resistance breeding programs in tea.
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Affiliation(s)
- Anjan Hazra
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Sanatan Ghosh
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Sudipta Naskar
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Piya Rahaman
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Chitralekha Roy
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Anirban Kundu
- Plant Genomics and Bioinformatics Laboratory, P.G. Department of Botany, Ramakrishna Mission Vivekananda Centenary College (Autonomous), Rahara, Kolkata, 700118, India
| | | | - Dipankar Chakraborti
- Department of Genetics, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
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Otify AM, ElBanna SA, Eltanany BM, Pont L, Benavente F, Ibrahim RM. A comprehensive analytical framework integrating liquid chromatography-tandem mass spectrometry metabolomics with chemometrics for metabolite profiling of lettuce varieties and discovery of antibacterial agents. Food Res Int 2023; 172:113178. [PMID: 37689928 DOI: 10.1016/j.foodres.2023.113178] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 06/17/2023] [Accepted: 06/19/2023] [Indexed: 09/11/2023]
Abstract
This study comprehensively characterized the metabolite profiles of six lettuce varieties and established the correlation between the elucidated profiles and their antivirulence effects. A total of 195 metabolites were annotated using LC-QTOF-MS/MS metabolomics assisted by molecular networking and integrated with chemometrics. Red varieties (red longifolia and lolla rosa) demonstrated higher chlorogenic and chicoric acids suggesting their antioxidant properties. In parallel, amino acids and disaccharides were enriched in romaine longifolia rationalizing its palatable taste and nutritional potential, while crispa, capitata, and lolla bionda presented a high β-carboline alkaloid content. The antibacterial and antihemolytic potential of all varieties against methicillin-sensitive and methicillin-resistant Staphylococcus aureus was assessed and validated by prominent downregulation of α-hemolysin transcriptional levels in both strains. Moreover, correlation analysis revealed sesquiterpenes, β-carboline alkaloids, amino acids, and oxy-fatty acids as the main bioactives. Results emphasize lettuce significance as a functional food and nutraceutical source, and highlight varieties naturally rich in antibacterial agents to adapt breeding programs.
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Affiliation(s)
- Asmaa M Otify
- Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, Cairo 11562, Egypt.
| | - Shahira A ElBanna
- Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo 11562, Egypt
| | - Basma M Eltanany
- Department of Analytical Chemistry, Faculty of Pharmacy, Cairo University, Cairo 11562, Egypt
| | - Laura Pont
- Department of Chemical Engineering and Analytical Chemistry, Institute for Research on Nutrition and Food Safety (INSA·UB), University of Barcelona, Barcelona 08028, Spain; Serra Húnter Program, Generalitat de Catalunya, Barcelona 08007, Spain
| | - Fernando Benavente
- Department of Chemical Engineering and Analytical Chemistry, Institute for Research on Nutrition and Food Safety (INSA·UB), University of Barcelona, Barcelona 08028, Spain.
| | - Rana M Ibrahim
- Department of Pharmacognosy, Faculty of Pharmacy, Cairo University, Cairo 11562, Egypt
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Tran TLC, Callahan DL, Islam MT, Wang Y, Arioli T, Cahill D. Comparative metabolomic profiling of Arabidopsis thaliana roots and leaves reveals complex response mechanisms induced by a seaweed extract. FRONTIERS IN PLANT SCIENCE 2023; 14:1114172. [PMID: 36968386 PMCID: PMC10035662 DOI: 10.3389/fpls.2023.1114172] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 02/15/2023] [Indexed: 06/18/2023]
Abstract
Seaweed extracts are a prominent class of biostimulants that enhance plant health and tolerance to biotic and abiotic stresses due to their unique bioactive components. However, the mechanisms of action of biostimulants are still unknown. Here, we have used a metabolomic approach, a UHPLC-MS method, to uncover the mechanisms induced following application to Arabidopsis thaliana of a seaweed extract derived from Durvillaea potatorum and Ascophyllum nodosum. We have identified, following the application of the extract, key metabolites and systemic responses in roots and leaves across 3 timepoints (0, 3, 5 days). Significant alterations in metabolite accumulation or reduction were found for those belonging to broad groups of compounds such as lipids, amino acids, and phytohormones; and secondary metabolites such as phenylpropanoids, glucosinolates, and organic acids. Strong accumulations of TCA cycle and N-containing and defensive metabolites such as glucosinolates were also found revealing the enhancement of carbon and nitrogen metabolism and defence systems. Our study has demonstrated that application of seaweed extract dramatically altered the metabolomic profiles of Arabidopsis and revealed differences in roots and leaves that varied across the timepoints tested. We also show clear evidence of systemic responses that were initiated in the roots and resulted in metabolic alterations in the leaves. Collectively, our results suggest that this seaweed extract promotes plant growth and activates defence systems by altering various physiological processes at the individual metabolite level.
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Affiliation(s)
- Thi Linh Chi Tran
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia
| | - Damien L. Callahan
- School of Life and Environmental Sciences, Centre for Cellular and Molecular Biology, Deakin University, Burwood, VIC, Australia
| | - Md Tohidul Islam
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia
| | - Yichao Wang
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia
| | - Tony Arioli
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia
- Seasol International R&D Department, Bayswater, VIC, Australia
| | - David Cahill
- School of Life and Environmental Sciences, Deakin University, Geelong, VIC, Australia
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Adhikary D, Kisiala A, Sarkar A, Basu U, Rahman H, Emery N, Kav NNV. Early-stage responses to Plasmodiophora brassicae at the transcriptome and metabolome levels in clubroot resistant and susceptible oilseed Brassica napus. Mol Omics 2022; 18:991-1014. [PMID: 36382681 DOI: 10.1039/d2mo00251e] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Clubroot, a devastating soil-borne root disease, in Brassicaceae is caused by Plasmodiophora brassicae Woronin (P. brassicae W.), an obligate biotrophic protist. Plant growth and development, as well as seed yield of Brassica crops, are severely affected due to this disease. Several reports described the molecular responses of B. napus to P. brassicae; however, information on the early stages of pathogenesis is limited. In this study, we have used transcriptomics and metabolomics to characterize P. brassicae pathogenesis at 1-, 4-, and 7-days post-inoculation (DPI) in clubroot resistant (CR) and susceptible (CS) doubled-haploid (DH) canola lines. When we compared between inoculated and uninoculated groups, a total of 214 and 324 putative genes exhibited differential expression (q-value < 0.05) at one or more time-points in the CR and CS genotypes, respectively. When the inoculated CR and inoculated CS genotypes were compared, 4765 DEGs were differentially expressed (q-value < 0.05) at one or more time-points. Several metabolites related to organic acids (e.g., citrate, pyruvate), amino acids (e.g., proline, aspartate), sugars, and mannitol, were differentially accumulated in roots in response to pathogen infection when the CR and CS genotypes were compared. Several DEGs also corresponded to differentially accumulated metabolites, including pyrroline-5-carboxylate reductase (BnaC04g11450D), citrate synthase (BnaC02g39080D), and pyruvate kinase (BnaC04g23180D) as detected by transcriptome analysis. Our results suggest important roles for these genes in mediating resistance to clubroot disease. To our knowledge, this is the first report of an integrated transcriptome and metabolome analysis aimed at characterizing the molecular basis of resistance to clubroot in canola.
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Affiliation(s)
- Dinesh Adhikary
- Department of Agricultural, Food & Nutritional Sciences, University of Alberta, Edmonton, AB, Canada.
| | - Anna Kisiala
- Biology Department, Trent University, Peterborough, ON, Canada
| | - Ananya Sarkar
- Department of Agricultural, Food & Nutritional Sciences, University of Alberta, Edmonton, AB, Canada.
| | - Urmila Basu
- Department of Agricultural, Food & Nutritional Sciences, University of Alberta, Edmonton, AB, Canada.
| | - Habibur Rahman
- Department of Agricultural, Food & Nutritional Sciences, University of Alberta, Edmonton, AB, Canada.
| | - Neil Emery
- Biology Department, Trent University, Peterborough, ON, Canada
| | - Nat N V Kav
- Department of Agricultural, Food & Nutritional Sciences, University of Alberta, Edmonton, AB, Canada.
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Integrated Transcriptome and Metabolome Analysis to Identify Sugarcane Gene Defense against Fall Armyworm ( Spodoptera frugiperda) Herbivory. Int J Mol Sci 2022; 23:ijms232213712. [PMID: 36430189 PMCID: PMC9694286 DOI: 10.3390/ijms232213712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/01/2022] [Accepted: 11/07/2022] [Indexed: 11/10/2022] Open
Abstract
Sugarcane is the most important sugar crop, contributing ≥80% to total sugar production around the world. Spodoptera frugiperda is one of the main pests of sugarcane, potentially causing severe yield and sugar loss. The identification of key defense factors against S. frugiperda herbivory can provide targets for improving sugarcane resistance to insect pests by molecular breeding. In this work, we used one of the main sugarcane pests, S. frugiperda, as the tested insect to attack sugarcane. Integrated transcriptome and metabolomic analyses were performed to explore the changes in gene expression and metabolic processes that occurred in sugarcane leaf after continuous herbivory by S. frugiperda larvae for 72 h. The transcriptome analysis demonstrated that sugarcane pest herbivory enhanced several herbivory-induced responses, including carbohydrate metabolism, secondary metabolites and amino acid metabolism, plant hormone signaling transduction, pathogen responses, and transcription factors. Further metabolome analysis verified the inducement of specific metabolites of amino acids and secondary metabolites by insect herbivory. Finally, association analysis of the transcriptome and metabolome by the Pearson correlation coefficient method brought into focus the target defense genes against insect herbivory in sugarcane. These genes include amidase and lipoxygenase in amino acid metabolism, peroxidase in phenylpropanoid biosynthesis, and pathogenesis-related protein 1 in plant hormone signal transduction. A putative regulatory model was proposed to illustrate the sugarcane defense mechanism against insect attack. This work will accelerate the dissection of the mechanism underlying insect herbivory in sugarcane and provide targets for improving sugarcane variety resistance to insect herbivory by molecular breeding.
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Kopczewski T, Kuźniak E, Ciereszko I, Kornaś A. Alterations in Primary Carbon Metabolism in Cucumber Infected with Pseudomonas syringae pv lachrymans: Local and Systemic Responses. Int J Mol Sci 2022; 23:ijms232012418. [PMID: 36293272 PMCID: PMC9603868 DOI: 10.3390/ijms232012418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/07/2022] [Accepted: 10/11/2022] [Indexed: 11/23/2022] Open
Abstract
The reconfiguration of the primary metabolism is essential in plant–pathogen interactions. We compared the local metabolic responses of cucumber leaves inoculated with Pseudomonas syringae pv lachrymans (Psl) with those in non-inoculated systemic leaves, by examining the changes in the nicotinamide adenine dinucleotides pools, the concentration of soluble carbohydrates and activities/gene expression of carbohydrate metabolism-related enzymes, the expression of photosynthesis-related genes, and the tricarboxylic acid cycle-linked metabolite contents and enzyme activities. In the infected leaves, Psl induced a metabolic signature with an altered [NAD(P)H]/[NAD(P)+] ratio; decreased glucose and sucrose contents, along with a changed invertase gene expression; and increased glucose turnover and accumulation of raffinose, trehalose, and myo-inositol. The accumulation of oxaloacetic and malic acids, enhanced activities, and gene expression of fumarase and l-malate dehydrogenase, as well as the increased respiration rate in the infected leaves, indicated that Psl induced the tricarboxylic acid cycle. The changes in gene expression of ribulose-l,5-bis-phosphate carboxylase/oxygenase large unit, phosphoenolpyruvate carboxylase and chloroplast glyceraldehyde-3-phosphate dehydrogenase were compatible with a net photosynthesis decline described earlier. Psl triggered metabolic changes common to the infected and non-infected leaves, the dynamics of which differed quantitatively (e.g., malic acid content and metabolism, glucose-6-phosphate accumulation, and glucose-6-phosphate dehydrogenase activity) and those specifically related to the local or systemic response (e.g., changes in the sugar content and turnover). Therefore, metabolic changes in the systemic leaves may be part of the global effects of local infection on the whole-plant metabolism and also represent a specific acclimation response contributing to balancing growth and defense.
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Affiliation(s)
- Tomasz Kopczewski
- Department of Plant Physiology and Biochemistry, Faculty of Biology and Environmental Protection, University of Lodz, 90-237 Lodz, Poland
| | - Elżbieta Kuźniak
- Department of Plant Physiology and Biochemistry, Faculty of Biology and Environmental Protection, University of Lodz, 90-237 Lodz, Poland
- Correspondence:
| | - Iwona Ciereszko
- Department of Plant Biology and Ecology, Faculty of Biology, University of Bialystok, 15-245 Bialystok, Poland
| | - Andrzej Kornaś
- Institute of Biology, Pedagogical University of Krakow, 30-084 Kraków, Poland
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Atanasov KE, Díaz-Narváez LC, Alcázar R. Ammonium and nitric oxide condition the establishment of Arabidopsis Ler/Kas-2 immune-related hybrid incompatibility. PLANTA 2022; 256:76. [PMID: 36087170 PMCID: PMC9464153 DOI: 10.1007/s00425-022-03990-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 09/01/2022] [Indexed: 06/15/2023]
Abstract
High ammonium suppresses hybrid incompatibility between Ler and Kas-2 accessions through lowering nitric oxide levels and nitrate reductase activity required for autoimmunity. The immune-related hybrid incompatibility (HI) between Landsberg erecta (Ler) and Kashmir-2 (Kas-2) accessions is due to a deleterious genetic interaction between the RPP1 (RECOGNITION OF PERONOSPORA PARASITICA1)-like Ler locus and Kas-2 alleles of the receptor-like kinase SRF3 (STRUBBELIG RECEPTOR FAMILY 3). The genetic incompatibility is temperature-dependent and leads to constitutive activation of the salicylic acid (SA) pathway, dwarfism and cell death at 14-16 °C. Here we investigated the effect of nutrition on the occurrence of Ler/Kas-2 HI and found that high ammonium suppresses Ler/Kas-2 incompatible phenotypes independently of the ammonium/nitrate ratio. Ammonium feeding leads to compromised disease resistance to Pseudomonas syringae pv. tomato DC3000, lower total SA, nitric oxide and nitrate reductase activity in Ler/Kas-2 incompatible hybrids. In addition, we find that Ler/Kas-2 incompatibility is dependent on NPR1 (NONEXPRESSER OF PR GENES 1) and nitric oxide production. Overall, this work highlights the effect of nutrition on the expression of incompatible phenotypes independently of temperature.
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Affiliation(s)
- Kostadin Evgeniev Atanasov
- Department of Biology, Healthcare and Environment, Section of Plant Physiology, Faculty of Pharmacy and Food Sciences, Universitat de Barcelona, 08028, Barcelona, Spain
| | - Lucía C Díaz-Narváez
- Department of Biology, Healthcare and Environment, Section of Plant Physiology, Faculty of Pharmacy and Food Sciences, Universitat de Barcelona, 08028, Barcelona, Spain
| | - Rubén Alcázar
- Department of Biology, Healthcare and Environment, Section of Plant Physiology, Faculty of Pharmacy and Food Sciences, Universitat de Barcelona, 08028, Barcelona, Spain.
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Transcriptome Meta-Analysis Identifies Candidate Hub Genes and Pathways of Pathogen Stress Responses in Arabidopsis thaliana. BIOLOGY 2022; 11:biology11081155. [PMID: 36009782 PMCID: PMC9404733 DOI: 10.3390/biology11081155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/25/2022] [Accepted: 07/29/2022] [Indexed: 11/17/2022]
Abstract
Simple Summary Meta-analysis and systems-biology analysis revealed molecular plant defense responses in Arabidopsis thaliana when attacked by various pathogens. Differentially expressed genes were involved in several biosynthetic metabolic pathways, including those responsible for the biosynthesis of secondary metabolites and pathways central to photosynthesis and plant–pathogen interactions. In addition, WRKY40, WRKY46, and STZ transcription factors served as major points in protein–protein interactions. Overall, the findings highlighted genes that are commonly expressed during plant–pathogen interactions and will be useful in the development of novel genetic resistance strategies. Abstract Following a pathogen attack, plants defend themselves using multiple defense mechanisms to prevent infections. We used a meta-analysis and systems-biology analysis to search for general molecular plant defense responses from transcriptomic data reported from different pathogen attacks in Arabidopsis thaliana. Data from seven studies were subjected to meta-analysis, which revealed a total of 3694 differentially expressed genes (DEGs), where both healthy and infected plants were considered. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis further suggested that the DEGs were involved in several biosynthetic metabolic pathways, including those responsible for the biosynthesis of secondary metabolites and pathways central to photosynthesis and plant–pathogen interactions. Using network analysis, we highlight the importance of WRKY40, WRKY46 and STZ, and suggest that they serve as major points in protein–protein interactions. This is especially true regarding networks of composite-metabolic responses by pathogens. In summary, this research provides a new approach that illuminates how different mechanisms of transcriptome responses can be activated in plants under pathogen infection and indicates that common genes vary in their ability to regulate plant responses to the pathogens studied herein.
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Moormann J, Heinemann B, Hildebrandt TM. News about amino acid metabolism in plant-microbe interactions. Trends Biochem Sci 2022; 47:839-850. [PMID: 35927139 DOI: 10.1016/j.tibs.2022.07.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 06/17/2022] [Accepted: 07/06/2022] [Indexed: 01/17/2023]
Abstract
Plants constantly come into contact with a diverse mix of pathogenic and beneficial microbes. The ability to distinguish between them and to respond appropriately is essential for plant health. Here we review recent progress in understanding the role of amino acid sensing, signaling, transport, and metabolism during plant-microbe interactions. Biochemical pathways converting individual amino acids into active compounds have recently been elucidated, and comprehensive large-scale approaches have brought amino acid sensors and transporters into focus. These findings show that plant central amino acid metabolism is closely interwoven with stress signaling and defense responses at various levels. The individual biochemical mechanisms and the interconnections between the different processes are just beginning to emerge and might serve as a foundation for new plant protection strategies.
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Affiliation(s)
- Jannis Moormann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany
| | - Björn Heinemann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany
| | - Tatjana M Hildebrandt
- Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Zülpicher Straße 47a, 50674 Cologne, Germany.
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12
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Protein glycosylation changes during systemic acquired resistance in Arabidopsis thaliana. Int J Biol Macromol 2022; 212:381-392. [PMID: 35623457 DOI: 10.1016/j.ijbiomac.2022.05.126] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/08/2022] [Accepted: 05/17/2022] [Indexed: 01/01/2023]
Abstract
N-glycosylation, an important post-translational modification of proteins in all eukaryotes, has been clearly shown to be involved in numerous diseases in mammalian systems. In contrast, little is known regarding the role of protein N-glycosylation in plant defensive responses to pathogen infection. We identified, for the first time, glycoproteins related to systemic acquired resistance (SAR) in an Arabidopsis thaliana model, using a glycoproteomics platform based on high-resolution mass spectrometry. 407 glycosylation sites corresponding to 378 glycopeptides and 273 unique glycoproteins were identified. 65 significantly changed glycoproteins with 80 N-glycosylation sites were detected in systemic leaves of SAR-induced plants, including numerous GDSL-like lipases, thioglucoside glucohydrolases, kinases, and glycosidases. Functional enrichment analysis revealed that significantly changed glycoproteins were involved mainly in N-glycan biosynthesis and degradation, phenylpropanoid biosynthesis, cutin and wax biosynthesis, and plant-pathogen interactions. Comparative analysis of glycoproteomics and proteomics data indicated that glycoproteomics analysis is an efficient method for screening proteins associated with SAR. The present findings clarify glycosylation status and sites of A. thaliana proteins, and will facilitate further research on roles of glycoproteins in SAR induction.
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13
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Song JB, Huang RK, Guo MJ, Zhou Q, Guo R, Zhang SY, Yao JW, Bai YN, Huang X. Lipids associated with plant-bacteria interaction identified using a metabolomics approach in an Arabidopsis thaliana model. PeerJ 2022; 10:e13293. [PMID: 35502205 PMCID: PMC9055996 DOI: 10.7717/peerj.13293] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 03/28/2022] [Indexed: 01/13/2023] Open
Abstract
Background Systemic acquired resistance (SAR) protects plants against a wide variety of pathogens. In recent decades, numerous studies have focused on the induction of SAR, but its molecular mechanisms remain largely unknown. Methods We used a metabolomics approach based on ultra-high-performance liquid chromatographic (UPLC) and mass spectrometric (MS) techniques to identify SAR-related lipid metabolites in an Arabidopsis thaliana model. Multiple statistical analyses were used to identify the differentially regulated metabolites. Results Numerous lipids were implicated as potential factors in both plant basal resistance and SAR; these include species of phosphatidic acid (PA), monogalactosyldiacylglycerol (MGDG), phosphatidylcholine (PC), phosphatidylethanolamine (PE), and triacylglycerol (TG). Conclusions Our findings indicate that lipids accumulated in both local and systemic leaves, while other lipids only accumulated in local leaves or in systemic leaves. PA (16:0_18:2), PE (34:5) and PE (16:0_18:2) had higher levels in both local leaves inoculated with Psm ES4326 or Psm avrRpm1 and systemic leaves of the plants locally infected with Psm avrRpm1 or Psm ES4326. PC (32:5) had high levels in leaves inoculated with Psm ES4326. Other differentially regulated metabolites, including PA (18:2_18:2), PA (16:0_18:3), PA (18:3_18:2), PE (16:0_18:3), PE (16:1_16:1), PE (34:4) and TGs showed higher levels in systemic leaves of the plants locally infected with Psm avrRpm1 or Psm ES4326. These findings will help direct future studies on the molecular mechanisms of SAR.
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Affiliation(s)
- Jian-Bo Song
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Rui-Ke Huang
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Miao-Jie Guo
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Qian Zhou
- Shanghai Omicsspace Biotechnology Co.Ltd., Shanghai, Shanghai, China
| | - Rui Guo
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Shu-Yuan Zhang
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Jing-Wen Yao
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Ya-Ni Bai
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
| | - Xuan Huang
- College of Life Sciences, Northwest University, Shaanxi, Xi’an, China,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Provincial Key Laboratory of Biotechnology of Shaanxi, Shaanxi, Xi’an, China
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14
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David L, Kang J, Nicklay J, Dufresne C, Chen S. Identification of DIR1-Dependant Cellular Responses in Guard Cell Systemic Acquired Resistance. Front Mol Biosci 2022; 8:746523. [PMID: 34977152 PMCID: PMC8718647 DOI: 10.3389/fmolb.2021.746523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 11/15/2021] [Indexed: 11/23/2022] Open
Abstract
After localized invasion by bacterial pathogens, systemic acquired resistance (SAR) is induced in uninfected plant tissues, resulting in enhanced defense against a broad range of pathogens. Although SAR requires mobilization of signaling molecules via the plant vasculature, the specific molecular mechanisms remain elusive. The lipid transfer protein defective in induced resistance 1 (DIR1) was identified in Arabidopsis thaliana by screening for mutants that were defective in SAR. Here, we demonstrate that stomatal response to pathogens is altered in systemic leaves by SAR, and this guard cell SAR defense requires DIR1. Using a multi-omics approach, we have determined potential SAR signaling mechanisms specific for guard cells in systemic leaves by profiling metabolite, lipid, and protein differences between guard cells in the wild type and dir1-1 mutant during SAR. We identified two long-chain 18 C and 22 C fatty acids and two 16 C wax esters as putative SAR-related molecules dependent on DIR1. Proteins and metabolites related to amino acid biosynthesis and response to stimulus were also changed in guard cells of dir1-1 compared to the wild type. Identification of guard cell-specific SAR-related molecules may lead to new avenues of genetic modification/molecular breeding for disease-resistant plants.
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Affiliation(s)
- Lisa David
- Department of Biology, University of Florida, Gainesville, FL, United States.,University of Florida Genetics Institute (UFGI), Gainesville, FL, United States
| | - Jianing Kang
- Department of Biology, University of Florida, Gainesville, FL, United States.,University of Florida Genetics Institute (UFGI), Gainesville, FL, United States.,College of Life Science, Northeast Agricultural University, Harbin, China
| | - Josh Nicklay
- Thermo Fisher Scientific, Somerset, NJ, United States
| | - Craig Dufresne
- Thermo Training Institute, Thermo Fisher Scientific, West Palm Beach, FL, United States
| | - Sixue Chen
- Department of Biology, University of Florida, Gainesville, FL, United States.,University of Florida Genetics Institute (UFGI), Gainesville, FL, United States.,Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL, United States.,Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research (ICBR), University of Florida, Gainesville, FL, United States
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15
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Chele KH, Steenkamp P, Piater LA, Dubery IA, Huyser J, Tugizimana F. A Global Metabolic Map Defines the Effects of a Si-Based Biostimulant on Tomato Plants under Normal and Saline Conditions. Metabolites 2021; 11:metabo11120820. [PMID: 34940578 PMCID: PMC8709197 DOI: 10.3390/metabo11120820] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Revised: 11/10/2021] [Accepted: 11/13/2021] [Indexed: 01/19/2023] Open
Abstract
The ongoing unpredictability of climate changes is exponentially exerting a negative impact on crop production, further aggravating detrimental abiotic stress effects. Several research studies have been focused on the genetic modification of crop plants to achieve more crop resilience against such stress factors; however, there has been a paradigm shift in modern agriculture focusing on more organic, eco-friendly and long-lasting systems to improve crop yield. As such, extensive research into the use of microbial and nonmicrobial biostimulants has been at the core of agricultural studies to improve crop growth and development, as well as to attain tolerance against several biotic and abiotic stresses. However, the molecular mechanisms underlying the biostimulant activity remain enigmatic. Thus, this study is a liquid chromatography-mass spectrometry (LC-MS)-based untargeted metabolomics approach to unravel the hypothetical biochemical framework underlying effects of a nonmicrobial biostimulant (a silicon-based formulation) on tomato plants (Solanum lycopersium) under salinity stress conditions. This metabolomics study postulates that Si-based biostimulants could alleviate salinity stress in tomato plants through modulation of the primary metabolism involving changes in the tricarboxylic acid cycle, fatty acid and numerous amino acid biosynthesis pathways, with further reprogramming of several secondary metabolism pathways such as the phenylpropanoid pathway, flavonoid biosynthesis pathways including flavone and flavanol biosynthesis. Thus, the postulated hypothetical framework, describing biostimulant-induced metabolic events in tomato plants, provides actionable knowledge necessary for industries and farmers to, confidently and innovatively, explore, design, and fully implement Si-based formulations and strategies into agronomic practices for sustainable agriculture and food production.
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Affiliation(s)
- Kekeletso H. Chele
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (K.H.C.); (P.S.); (L.A.P.); (I.A.D.)
| | - Paul Steenkamp
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (K.H.C.); (P.S.); (L.A.P.); (I.A.D.)
| | - Lizelle A. Piater
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (K.H.C.); (P.S.); (L.A.P.); (I.A.D.)
| | - Ian A. Dubery
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (K.H.C.); (P.S.); (L.A.P.); (I.A.D.)
| | - Johan Huyser
- International Research and Development Division, Omnia Group, Ltd., Johannesburg 2021, South Africa;
| | - Fidele Tugizimana
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (K.H.C.); (P.S.); (L.A.P.); (I.A.D.)
- International Research and Development Division, Omnia Group, Ltd., Johannesburg 2021, South Africa;
- Correspondence: ; Tel.: +27-011-559-7784
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16
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Soil Salinity, a Serious Environmental Issue and Plant Responses: A Metabolomics Perspective. Metabolites 2021; 11:metabo11110724. [PMID: 34822381 PMCID: PMC8620211 DOI: 10.3390/metabo11110724] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 10/16/2021] [Accepted: 10/18/2021] [Indexed: 12/12/2022] Open
Abstract
The effects of global warming have increasingly led to devastating environmental stresses, such as heat, salinity, and drought. Soil salinization is a serious environmental issue and results in detrimental abiotic stress, affecting 7% of land area and 33% of irrigated lands worldwide. The proportion of arable land facing salinity is expected to rise due to increasing climate change fuelled by anthropogenic activities, exacerbating the threat to global food security for the exponentially growing populace. As sessile organisms, plants have evolutionarily developed mechanisms that allow ad hoc responses to salinity stress. The orchestrated mechanisms include signalling cascades involving phytohormones, kinases, reactive oxygen species (ROS), and calcium regulatory networks. As a pillar in a systems biology approach, metabolomics allows for comprehensive interrogation of the biochemistry and a deconvolution of molecular mechanisms involved in plant responses to salinity. Thus, this review highlights soil salinization as a serious environmental issue and points to the negative impacts of salinity on plants. Furthermore, the review summarises mechanisms regulating salinity tolerance on molecular, cellular, and biochemical levels with a focus on metabolomics perspectives. This critical synthesis of current literature is an opportunity to revisit the current models regarding plant responses to salinity, with an invitation to further fundamental research for novel and actionable insights.
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17
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McIntyre KE, Bush DR, Argueso CT. Cytokinin Regulation of Source-Sink Relationships in Plant-Pathogen Interactions. FRONTIERS IN PLANT SCIENCE 2021; 12:677585. [PMID: 34504504 PMCID: PMC8421792 DOI: 10.3389/fpls.2021.677585] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 07/12/2021] [Indexed: 06/01/2023]
Abstract
Cytokinins are plant hormones known for their role in mediating plant growth. First discovered for their ability to promote cell division, this class of hormones is now associated with many other cellular and physiological functions. One of these functions is the regulation of source-sink relationships, a tightly controlled process that is essential for proper plant growth and development. As discovered more recently, cytokinins are also important for the interaction of plants with pathogens, beneficial microbes and insects. Here, we review the importance of cytokinins in source-sink relationships in plants, with relation to both carbohydrates and amino acids, and highlight a possible function for this regulation in the context of plant biotic interactions.
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Affiliation(s)
- Kathryn E. McIntyre
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO, United States
- Graduate Program in Cell and Molecular Biology, Colorado State University, Fort Collins, CO, United States
| | - Daniel R. Bush
- Department of Biology, Colorado State University, Fort Collins, CO, United States
| | - Cristiana T. Argueso
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO, United States
- Graduate Program in Cell and Molecular Biology, Colorado State University, Fort Collins, CO, United States
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18
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Hou S, Thiergart T, Vannier N, Mesny F, Ziegler J, Pickel B, Hacquard S. A microbiota-root-shoot circuit favours Arabidopsis growth over defence under suboptimal light. NATURE PLANTS 2021; 7:1078-1092. [PMID: 34226690 PMCID: PMC8367822 DOI: 10.1038/s41477-021-00956-4] [Citation(s) in RCA: 70] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 06/02/2021] [Indexed: 05/03/2023]
Abstract
Bidirectional root-shoot signalling is probably key in orchestrating stress responses and ensuring plant survival. Here, we show that Arabidopsis thaliana responses to microbial root commensals and light are interconnected along a microbiota-root-shoot axis. Microbiota and light manipulation experiments in a gnotobiotic plant system reveal that low photosynthetically active radiation perceived by leaves induces long-distance modulation of root bacterial communities but not fungal or oomycete communities. Reciprocally, microbial commensals alleviate plant growth deficiency under low photosynthetically active radiation. This growth rescue was associated with reduced microbiota-induced aboveground defence responses and altered resistance to foliar pathogens compared with the control light condition. Inspection of a set of A. thaliana mutants reveals that this microbiota- and light-dependent growth-defence trade-off is directly explained by belowground bacterial community composition and requires the host transcriptional regulator MYC2. Our work indicates that aboveground stress responses in plants can be modulated by signals from microbial root commensals.
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Affiliation(s)
- Shiji Hou
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
| | | | - Nathan Vannier
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
| | - Fantin Mesny
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
| | - Jörg Ziegler
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Halle, Germany
| | - Brigitte Pickel
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
| | - Stéphane Hacquard
- Max Planck Institute for Plant Breeding Research, Cologne, Germany.
- Cluster of Excellence on Plant Sciences (CEPLAS), Max Planck Institute for Plant Breeding Research, Cologne, Germany.
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19
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Lephatsi MM, Meyer V, Piater LA, Dubery IA, Tugizimana F. Plant Responses to Abiotic Stresses and Rhizobacterial Biostimulants: Metabolomics and Epigenetics Perspectives. Metabolites 2021; 11:457. [PMID: 34357351 PMCID: PMC8305699 DOI: 10.3390/metabo11070457] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 07/12/2021] [Accepted: 07/13/2021] [Indexed: 01/14/2023] Open
Abstract
In response to abiotic stresses, plants mount comprehensive stress-specific responses which mediate signal transduction cascades, transcription of relevant responsive genes and the accumulation of numerous different stress-specific transcripts and metabolites, as well as coordinated stress-specific biochemical and physiological readjustments. These natural mechanisms employed by plants are however not always sufficient to ensure plant survival under abiotic stress conditions. Biostimulants such as plant growth-promoting rhizobacteria (PGPR) formulation are emerging as novel strategies for improving crop quality, yield and resilience against adverse environmental conditions. However, to successfully formulate these microbial-based biostimulants and design efficient application programs, the understanding of molecular and physiological mechanisms that govern biostimulant-plant interactions is imperatively required. Systems biology approaches, such as metabolomics, can unravel insights on the complex network of plant-PGPR interactions allowing for the identification of molecular targets responsible for improved growth and crop quality. Thus, this review highlights the current models on plant defence responses to abiotic stresses, from perception to the activation of cellular and molecular events. It further highlights the current knowledge on the application of microbial biostimulants and the use of epigenetics and metabolomics approaches to elucidate mechanisms of action of microbial biostimulants.
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Affiliation(s)
- Motseoa M. Lephatsi
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (M.M.L.); (L.A.P.); (I.A.D.)
| | - Vanessa Meyer
- School of Molecular and Cell Biology, University of the Witwatersrand, Private Bag 3, WITS, Johannesburg 2050, South Africa;
| | - Lizelle A. Piater
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (M.M.L.); (L.A.P.); (I.A.D.)
| | - Ian A. Dubery
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (M.M.L.); (L.A.P.); (I.A.D.)
| | - Fidele Tugizimana
- Department of Biochemistry, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa; (M.M.L.); (L.A.P.); (I.A.D.)
- International Research and Development Division, Omnia Group, Ltd., Johannesburg 2021, South Africa
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20
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Bacteriophage-Mediated Control of Phytopathogenic Xanthomonads: A Promising Green Solution for the Future. Microorganisms 2021; 9:microorganisms9051056. [PMID: 34068401 PMCID: PMC8153558 DOI: 10.3390/microorganisms9051056] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 05/05/2021] [Accepted: 05/11/2021] [Indexed: 12/21/2022] Open
Abstract
Xanthomonads, members of the family Xanthomonadaceae, are economically important plant pathogenic bacteria responsible for infections of over 400 plant species. Bacteriophage-based biopesticides can provide an environmentally friendly, effective solution to control these bacteria. Bacteriophage-based biocontrol has important advantages over chemical pesticides, and treatment with these biopesticides is a minor intervention into the microflora. However, bacteriophages’ agricultural application has limitations rooted in these viruses’ biological properties as active substances. These disadvantageous features, together with the complicated registration process of bacteriophage-based biopesticides, means that there are few products available on the market. This review summarizes our knowledge of the Xanthomonas-host plant and bacteriophage-host bacterium interaction’s possible influence on bacteriophage-based biocontrol strategies and provides examples of greenhouse and field trials and products readily available in the EU and the USA. It also details the most important advantages and limitations of the agricultural application of bacteriophages. This paper also investigates the legal background and industrial property right issues of bacteriophage-based biopesticides. When appropriately applied, bacteriophages can provide a promising tool against xanthomonads, a possibility that is untapped. Information presented in this review aims to explore the potential of bacteriophage-based biopesticides in the control of xanthomonads in the future.
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21
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Frenken T, Paseka R, González AL, Asik L, Seabloom EW, White LA, Borer ET, Strauss AT, Peace A, Van de Waal DB. Changing elemental cycles, stoichiometric mismatches, and consequences for pathogens of primary producers. OIKOS 2021. [DOI: 10.1111/oik.08253] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Thijs Frenken
- Dept of Aquatic Ecology, Netherlands Inst. of Ecology (NIOO‐KNAW) Wageningen the Netherlands
- Great Lakes Inst. for Environmental Research (GLIER), Univ. of Windsor Windsor ON Canada
| | - Rachel Paseka
- Dept of Ecology, Evolution and Behavior, Univ. of Minnesota St. Paul MN USA
| | | | - Lale Asik
- Dept of Biology and Center for Computational and Integrative Biology, Rutgers Univ. Camden NJ USA
| | - Eric W. Seabloom
- Great Lakes Inst. for Environmental Research (GLIER), Univ. of Windsor Windsor ON Canada
| | - Lauren A. White
- National Socio‐Environmental Synthesis Center (SESYNC), Univ. of Maryland Annapolis MD USA
| | - Elizabeth T. Borer
- Great Lakes Inst. for Environmental Research (GLIER), Univ. of Windsor Windsor ON Canada
| | - Alex T. Strauss
- Great Lakes Inst. for Environmental Research (GLIER), Univ. of Windsor Windsor ON Canada
- Dept of Ecology, Evolution and Behavior, Univ. of Minnesota St. Paul MN USA
| | - Angela Peace
- Dept of Mathematics and Statistics, Texas Tech Univ. Lubbock TX USA
| | - Dedmer B. Van de Waal
- Dept of Aquatic Ecology, Netherlands Inst. of Ecology (NIOO‐KNAW) Wageningen the Netherlands
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22
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Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum. Cells 2021; 10:cells10030644. [PMID: 33805842 PMCID: PMC7999030 DOI: 10.3390/cells10030644] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 03/08/2021] [Accepted: 03/10/2021] [Indexed: 11/17/2022] Open
Abstract
Plants show an extraordinary diversity in chemical composition and are characterized by different functional traits. However, relationships between the foliar primary and specialized metabolism in terms of metabolite numbers and composition as well as links with the leaf economics spectrum have rarely been explored. We investigated these relationships in leaves of 20 woody species from the Mediterranean region grown as saplings in a common garden, using a comparative ecometabolomics approach that included (semi-)polar primary and specialized metabolites. Our analyses revealed significant positive correlations between both the numbers and relative composition of primary and specialized metabolites. The leaf metabolomes were highly species-specific but in addition showed some phylogenetic imprints. Moreover, metabolomes of deciduous species were distinct from those of evergreens. Significant relationships were found between the primary metabolome and nitrogen content and carbon/nitrogen ratio, important traits of the leaf economics spectrum, ranging from acquisitive (mostly deciduous) to conservative (evergreen) leaves. A comprehensive understanding of various leaf traits and their coordination in different plant species may facilitate our understanding of plant functioning in ecosystems. Chemodiversity is thereby an important component of biodiversity.
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23
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Rodrigues AM, Miguel C, Chaves I, António C. Mass spectrometry-based forest tree metabolomics. MASS SPECTROMETRY REVIEWS 2021; 40:126-157. [PMID: 31498921 DOI: 10.1002/mas.21603] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Accepted: 08/05/2019] [Indexed: 05/24/2023]
Abstract
Research in forest tree species has advanced slowly when compared with other agricultural crops and model organisms, mainly due to the long-life cycles, large genome sizes, and lack of genomic tools. Additionally, trees are complex matrices, and the presence of interferents (e.g., oleoresins and cellulose) challenges the analysis of tree tissues with mass spectrometry (MS)-based analytical platforms. In this review, advances in MS-based forest tree metabolomics are discussed. Given their economic and ecological significance, particular focus is given to Pinus, Quercus, and Eucalyptus forest tree species to better understand their metabolite responses to abiotic and biotic stresses in the current climate change scenario. Furthermore, MS-based metabolomics technologies produce large and complex datasets that require expertize to adequately manage, process, analyze, and store the data in dedicated repositories. To ensure that the full potential of forest tree metabolomics data are translated into new knowledge, these data should comply with the FAIR principles (i.e., Findable, Accessible, Interoperable, and Re-usable). It is essential that adequate standards are implemented to annotate metadata from forest tree metabolomics studies as is already required by many science and governmental agencies and some major scientific publishers. © 2019 John Wiley & Sons Ltd. Mass Spec Rev 40:126-157, 2021.
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Affiliation(s)
- Ana Margarida Rodrigues
- Plant Metabolomics Laboratory, GreenIT-Bioresources for Sustainability, Instituto de Tecnologia Química e Biológica António Xavie, Universidade Nova de Lisboa (ITQB NOVA) Avenida da República, Oeiras, 2780-157, Portugal
| | - Célia Miguel
- Forest Genomics & Molecular Genetics Lab, BioISI-Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of Lisboa, 1749-016, Lisboa, Portugal
- Instituto de Biologia Experimental e Tecnológica (iBET), 2780-157, Oeiras, Portugal
| | - Inês Chaves
- Forest Genomics & Molecular Genetics Lab, BioISI-Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of Lisboa, 1749-016, Lisboa, Portugal
- Instituto de Biologia Experimental e Tecnológica (iBET), 2780-157, Oeiras, Portugal
| | - Carla António
- Plant Metabolomics Laboratory, GreenIT-Bioresources for Sustainability, Instituto de Tecnologia Química e Biológica António Xavie, Universidade Nova de Lisboa (ITQB NOVA) Avenida da República, Oeiras, 2780-157, Portugal
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24
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Abstract
The study of metabolic changes associated with host-pathogen interactions have largely focused on the strategies that microbes use to subvert host metabolism to support their own proliferation. However, recent reports demonstrate that changes in host cell metabolism can also be detrimental to pathogens and restrict their growth. In this Review, I present a framework to consider how the host cell exploits the multifaceted roles of metabolites to defend against microbes. I also highlight how the rewiring of metabolic processes can strengthen cellular barriers to microbial invasion, regulate microbial virulence programs and factors, limit microbial access to nutrient sources and generate toxic environments for microbes. Collectively, the studies described here support a critical role for the rewiring of cellular metabolism in the defense against microbes. Further study of host-pathogen interactions from this framework has the potential to reveal novel aspects of host defense and metabolic control, and may inform how human metabolism impacts the progression of infectious disease.
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Affiliation(s)
- Lena Pernas
- Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany .,Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), University of Cologne, 50931 Cologne, Germany
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25
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Farag MA, Sharaf El-Din MG, Selim MA, Owis AI, Abouzid SF, Porzel A, Wessjohann LA, Otify A. Nuclear Magnetic Resonance Metabolomics Approach for the Analysis of Major Legume Sprouts Coupled to Chemometrics. Molecules 2021; 26:molecules26030761. [PMID: 33540661 PMCID: PMC7867271 DOI: 10.3390/molecules26030761] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 01/27/2021] [Accepted: 01/28/2021] [Indexed: 11/20/2022] Open
Abstract
Legume sprouts are a fresh nutritive source of phytochemicals of increasing attention worldwide owing to their many health benefits. Nuclear magnetic resonance (NMR) was utilized for the metabolite fingerprinting of 4 major legume sprouts, belonging to family Fabaceae, to be exploited for quality control purposes. Thirty-two metabolites were identified belonging to different classes, i.e., fatty acids, sugars, amino acids, nucleobases, organic acids, sterols, alkaloids, and isoflavonoids. Quantitative NMR was employed for assessing the major identified metabolite levels and multivariate data analysis was utilized to assess metabolome heterogeneity among sprout samples. Isoflavones were detected exclusively in Cicer sprouts, whereas Trigonella was characterized by 4-hydroxyisoleucine. Vicia sprouts were distinguished from other legume sprouts by the presence of L-Dopa versus acetate abundance in Lens. A common alkaloid in all sprouts was trigonelline, detected at 8–25 µg/mg, suggesting its potential role in legume seeds’ germination. Trigonelline was found at highest levels in Trigonella sprouts. The aromatic NMR region data (δ 11.0–5.0 ppm) provided a better classification power than the full range (δ 11.0–0.0 ppm) as sprout variations mostly originated from secondary metabolites, which can serve as chemotaxonomic markers.
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Affiliation(s)
- Mohamed A. Farag
- Pharmacognosy Department, Faculty of Pharmacy, Cairo University, Cairo 12613, Egypt; (M.A.S.); (A.O.)
- Chemistry Department, School of Sciences & Engineering, The American University in Cairo, New Cairo 11835, Egypt
- Correspondence: (M.A.F.); (L.A.W.)
| | | | - Mohamed A. Selim
- Pharmacognosy Department, Faculty of Pharmacy, Cairo University, Cairo 12613, Egypt; (M.A.S.); (A.O.)
- Pharmacognosy Department, Faculty of Pharmacy, Misr University for Science & Technology (MUST), 6th October City 12566, Egypt
| | - Asmaa I. Owis
- Pharmacognosy Department, Faculty of Pharmacy, Beni-Suef University, Beni-Suef 62521, Egypt; (A.I.O.); (S.F.A.)
| | - Sameh F. Abouzid
- Pharmacognosy Department, Faculty of Pharmacy, Beni-Suef University, Beni-Suef 62521, Egypt; (A.I.O.); (S.F.A.)
| | - Andrea Porzel
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany;
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany;
- Correspondence: (M.A.F.); (L.A.W.)
| | - Asmaa Otify
- Pharmacognosy Department, Faculty of Pharmacy, Cairo University, Cairo 12613, Egypt; (M.A.S.); (A.O.)
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26
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Besnard J, Sonawala U, Maharjan B, Collakova E, Finlayson SA, Pilot G, McDowell J, Okumoto S. Increased Expression of UMAMIT Amino Acid Transporters Results in Activation of Salicylic Acid Dependent Stress Response. FRONTIERS IN PLANT SCIENCE 2021; 11:606386. [PMID: 33574824 PMCID: PMC7870477 DOI: 10.3389/fpls.2020.606386] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 12/17/2020] [Indexed: 05/29/2023]
Abstract
In addition to their role in the biosynthesis of important molecules such as proteins and specialized metabolites, amino acids are known to function as signaling molecules through various pathways to report nitrogen status and trigger appropriate metabolic and cellular responses. Moreover, changes in amino acid levels through altered amino acid transporter activities trigger plant immune responses. Specifically, loss of function of major amino acid transporter, over-expression of cationic amino acid transporter, or over-expression of the positive regulators of membrane amino acid export all lead to dwarfed phenotypes and upregulated salicylic acid (SA)-induced stress marker genes. However, whether increasing amino acid exporter protein levels lead to similar stress phenotypes has not been investigated so far. Recently, a family of transporters, namely USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTERS (UMAMITs), were identified as amino acid exporters. The goal of this study was to investigate the effects of increased amino acid export on plant development, growth, and reproduction to further examine the link between amino acid transport and stress responses. The results presented here show strong evidence that an increased expression of UMAMIT transporters induces stress phenotypes and pathogen resistance, likely due to the establishment of a constitutive stress response via a SA-dependent pathway.
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Affiliation(s)
- Julien Besnard
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA, United States
- Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Texas A&M University, College Station, TX, United States
| | - Unnati Sonawala
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA, United States
| | - Bal Maharjan
- Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Texas A&M University, College Station, TX, United States
| | - Eva Collakova
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - Scott A. Finlayson
- Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Texas A&M University, College Station, TX, United States
- Faculty of Molecular and Environmental Plant Sciences, Texas A&M University, College Station, TX, United States
| | - Guillaume Pilot
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - John McDowell
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - Sakiko Okumoto
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA, United States
- Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Texas A&M University, College Station, TX, United States
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27
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Yang L, Wang Z, Hua J. A Meta-Analysis Reveals Opposite Effects of Biotic and Abiotic Stresses on Transcript Levels of Arabidopsis Intracellular Immune Receptor Genes. FRONTIERS IN PLANT SCIENCE 2021; 12:625729. [PMID: 33747005 PMCID: PMC7969532 DOI: 10.3389/fpls.2021.625729] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 02/01/2021] [Indexed: 05/06/2023]
Abstract
Plant intracellular immune receptor NLR (nucleotide-binding leucine-rich repeat) proteins sense the presence of pathogens and trigger strong and robust immune responses. NLR genes are known to be tightly controlled at the protein level, but little is known about their dynamics at the transcript level. In this study, we presented a meta-analysis of transcript dynamics of all 207 NLR genes in the Col-0 accession of Arabidopsis thaliana under various biotic and abiotic stresses based on 88 publicly available RNA sequencing datasets from 27 independent studies. We find that about two thirds of the NLR genes are generally induced by pathogens, immune elicitors, or salicylic acid (SA), suggesting that transcriptional induction of NLR genes might be an important mechanism in plant immunity regulation. By contrast, NLR genes induced by biotic stresses are often repressed by abscisic acid, high temperature and drought, suggesting that transcriptional regulation of NLR genes might be important for interaction between abiotic and biotic stress responses. In addition, pathogen-induced expression of some NLR genes are dependent on SA induction. Interestingly, a small group of NLR genes are repressed under certain biotic stress treatments, suggesting an unconventional function of this group of NLRs. This meta-analysis thus reveals the transcript dynamics of NLR genes under biotic and abiotic stress conditions and suggests a contribution of NLR transcript regulation to plant immunity as well as interactions between abiotic and biotic stress responses.
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28
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Zhou Q, Meng Q, Tan X, Ding W, Ma K, Xu Z, Huang X, Gao H. Protein Phosphorylation Changes During Systemic Acquired Resistance in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2021; 12:748287. [PMID: 34858456 PMCID: PMC8632492 DOI: 10.3389/fpls.2021.748287] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 10/08/2021] [Indexed: 05/03/2023]
Abstract
Systemic acquired resistance (SAR) in plants is a defense response that provides resistance against a wide range of pathogens at the whole-plant level following primary infection. Although the molecular mechanisms of SAR have been extensively studied in recent years, the role of phosphorylation that occurs in systemic leaves of SAR-induced plants is poorly understood. We used a data-independent acquisition (DIA) phosphoproteomics platform based on high-resolution mass spectrometry in an Arabidopsis thaliana model to identify phosphoproteins related to SAR establishment. A total of 8011 phosphorylation sites from 3234 proteins were identified in systemic leaves of Pseudomonas syringae pv. maculicola ES4326 (Psm ES4326) and mock locally inoculated plants. A total of 859 significantly changed phosphoproteins from 1119 significantly changed phosphopeptides were detected in systemic leaves of Psm ES4326 locally inoculated plants, including numerous transcription factors and kinases. A variety of defense response-related proteins were found to be differentially phosphorylated in systemic leaves of Psm ES4326 locally inoculated leaves, suggesting that these proteins may be functionally involved in SAR through phosphorylation or dephosphorylation. Significantly changed phosphoproteins were enriched mainly in categories related to response to abscisic acid, regulation of stomatal movement, plant-pathogen interaction, MAPK signaling pathway, purine metabolism, photosynthesis-antenna proteins, and flavonoid biosynthesis. A total of 28 proteins were regulated at both protein and phosphorylation levels during SAR. RT-qPCR analysis revealed that changes in phosphorylation levels of proteins during SAR did not result from changes in transcript abundance. This study provides comprehensive details of key phosphoproteins associated with SAR, which will facilitate further research on the molecular mechanisms of SAR.
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Affiliation(s)
- Qingfeng Zhou
- College of Biology and Food, Shangqiu Normal University, Shangqiu, China
| | - Qi Meng
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
| | - Xiaomin Tan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
| | - Wei Ding
- Shanghai Omicsspace Biotechnology Co., Ltd., Shanghai, China
| | - Kang Ma
- College of Biology and Food, Shangqiu Normal University, Shangqiu, China
| | - Ziqin Xu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
| | - Xuan Huang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi’an, China
- *Correspondence: Xuan Huang,
| | - Hang Gao
- College of Biology and Food, Shangqiu Normal University, Shangqiu, China
- Hang Gao,
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29
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Zhang J, Coaker G, Zhou JM, Dong X. Plant Immune Mechanisms: From Reductionistic to Holistic Points of View. MOLECULAR PLANT 2020; 13:1358-1378. [PMID: 32916334 PMCID: PMC7541739 DOI: 10.1016/j.molp.2020.09.007] [Citation(s) in RCA: 67] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 09/05/2020] [Accepted: 09/08/2020] [Indexed: 05/19/2023]
Abstract
After three decades of the amazing progress made on molecular studies of plant-microbe interactions (MPMI), we have begun to ask ourselves "what are the major questions still remaining?" as if the puzzle has only a few pieces missing. Such an exercise has ultimately led to the realization that we still have many more questions than answers. Therefore, it would be an impossible task for us to project a coherent "big picture" of the MPMI field in a single review. Instead, we provide our opinions on where we would like to go in our research as an invitation to the community to join us in this exploration of new MPMI frontiers.
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Affiliation(s)
- Jie Zhang
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; CAS Center for Excellence in Biotic Interactions, College of Advanced Agricutural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gitta Coaker
- Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA
| | - Jian-Min Zhou
- CAS Center for Excellence in Biotic Interactions, College of Advanced Agricutural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Xinnian Dong
- Howard Hughes Medical Institute, Duke University, Durham, NC 27708, USA; Department of Biology, Duke University, PO Box 90338, Durham, NC 27708, USA.
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30
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Gao H, Zhou Q, Yang L, Zhang K, Ma Y, Xu ZQ. Metabolomics analysis identifies metabolites associated with systemic acquired resistance in Arabidopsis. PeerJ 2020; 8:e10047. [PMID: 33062444 PMCID: PMC7532762 DOI: 10.7717/peerj.10047] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 09/05/2020] [Indexed: 12/22/2022] Open
Abstract
Background Systemic acquired resistance (SAR) is a type of plant defense response that provides a long-lasting resistance to broad-spectrum pathogens in uninfected distal tissues following an initial localized infection. However, little information is available at present on the biological basis of SAR at the molecular level, especially in uninfected distal leaves. Methods In the present work, we used two SAR-inducing pathogens, avirulent Pseudomonas syringae pv. maculicola ES4326 harboring avrRpm1 (Psm avrRpm1) and virulent P. syringae pv. maculicola ES4326 (Psm ES4326), to induce SAR in Arabidopsis ecotype Col-0. A metabolomics approach based on ultra-high-performance liquid chromatography (UPLC) coupled with mass spectrometry (MS) was used to identify SAR-related metabolites in infected local leaves, and in uninfected distal leaves. Results Differentially accumulated metabolites were distinguished by statistical analyses. The results showed that both the primary metabolism and the secondary metabolism were significantly altered in infected local leaves and in uninfected distal leaves, including phenolic compounds, amino acids, nucleotides, organic acids, and many other metabolites. Conclusions The content of amino acids and phenolic compounds increased in uninfected distal leaves, suggesting their contribution to the establishment of SAR. In addition, 2′-hydroxy-4, 4′, 6′-trimethoxychalcone, phenylalanine, and p-coumaric acid were identified as potential components which may play important roles both in basic resistance and in SAR. This work provides a reference for understanding of the metabolic mechanism associated with SAR in plants, which will be useful for further investigation of the molecular basis of the systemic immunity.
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Affiliation(s)
- Hang Gao
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Shaanxi Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi'an, Shaanxi, People's Republic of China
| | - Qian Zhou
- Shanghai Omicsspace Biotechnology Co. Ltd., Shanghai, People's Republic of China
| | - Liu Yang
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Shaanxi Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi'an, Shaanxi, People's Republic of China
| | - Kaili Zhang
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Shaanxi Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi'an, Shaanxi, People's Republic of China
| | - Yeye Ma
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Shaanxi Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi'an, Shaanxi, People's Republic of China
| | - Zi-Qin Xu
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), Shaanxi Provincial Key Laboratory of Biotechnology, College of Life Sciences, Northwest University, Xi'an, Shaanxi, People's Republic of China
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31
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Kopczewski T, Kuźniak E, Kornaś A, Rut G, Nosek M, Ciereszko I, Szczepaniak L. Local and Systemic Changes in Photosynthetic Parameters and Antioxidant Activity in Cucumber Challenged with Pseudomonas syringae pv lachrymans. Int J Mol Sci 2020; 21:E6378. [PMID: 32887449 PMCID: PMC7504232 DOI: 10.3390/ijms21176378] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 08/30/2020] [Accepted: 08/31/2020] [Indexed: 12/20/2022] Open
Abstract
We studied changes in gas exchange, photochemical activity and the antioxidant system in cucumber leaves locally infected with Pseudomonas syringae pv lachrymans and in uninfected systemic ones. Infection-induced declined net photosynthesis rate and the related changes in transpiration rate, the intracellular CO2 concentration, and prolonged reduction in maximal PSII quantum yield (Fv/Fm), accompanied by an increase in non-photochemical quenching (NPQ), were observed only in the infected leaves, along with full disease symptom development. Infection severely affected the ROS/redox homeostasis at the cellular level and in chloroplasts. Superoxide dismutase, ascorbate, and tocopherol were preferentially induced at the early stage of pathogenesis, whereas catalase, glutathione, and the ascorbate-glutathione cycle enzymes were activated later. Systemic leaves retained their net photosynthesis rate and the changes in the antioxidant system were partly like those in the infected leaves, although they occurred later and were less intense. Re-balancing of ascorbate and glutathione in systemic leaves generated a specific redox signature in chloroplasts. We suggest that it could be a regulatory element playing a role in integrating photosynthesis and redox regulation of stress, aimed at increasing the defense capacity and maintaining the growth of the infected plant.
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Affiliation(s)
- Tomasz Kopczewski
- Department of Plant Physiology and Biochemistry, Faculty of Biology and Environmental Protection, University of Łódź, Banacha 12/16, 90-237 Łódź, Poland;
| | - Elżbieta Kuźniak
- Department of Plant Physiology and Biochemistry, Faculty of Biology and Environmental Protection, University of Łódź, Banacha 12/16, 90-237 Łódź, Poland;
| | - Andrzej Kornaś
- Institute of Biology, Pedagogical University, Podchorążych 2, 30-084 Kraków, Poland; (A.K.); (G.R.); (M.N.)
| | - Grzegorz Rut
- Institute of Biology, Pedagogical University, Podchorążych 2, 30-084 Kraków, Poland; (A.K.); (G.R.); (M.N.)
| | - Michał Nosek
- Institute of Biology, Pedagogical University, Podchorążych 2, 30-084 Kraków, Poland; (A.K.); (G.R.); (M.N.)
| | - Iwona Ciereszko
- Department of Plant Biology and Ecology, Faculty of Biology, University of Bialystok, Ciolkowskiego 1J, 15-245 Bialystok, Poland;
| | - Lech Szczepaniak
- Department of Environmental Chemistry, Faculty of Chemistry, University of Bialystok, Ciolkowskiego 1K, 15-245 Bialystok, Poland;
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32
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Ranjbar Sistani N, Desalegn G, Kaul HP, Wienkoop S. Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach. FRONTIERS IN PLANT SCIENCE 2020; 11:872. [PMID: 32612631 PMCID: PMC7309134 DOI: 10.3389/fpls.2020.00872] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 05/28/2020] [Indexed: 06/11/2023]
Abstract
Pulses are one of the most important categories of food plants, and Pea (Pisum sativum L.) as a member of pulses is considered a key crop for food and feed and sustainable agriculture. Integrative multi-omics and microsymbiont impact studies on the plant's immune system are important steps toward more productive and tolerant food plants and thus will help to find solutions against food poverty. Didymella pinodes is a main fungal pathogen of pea plants. Arbuscular mycorrhizal fungi (AMF) promote plant growth and alleviate various stresses. However, it remained unclear as to how the AMF effect on seed metabolism and how this influences resistance against the pathogen. This study assesses the AMF impacts on yield components and seed quality upon D. pinodes infection on two different P. sativum cultivars, susceptible versus tolerant, grown in pots through phenotypic and seed molecular analyses. We found that AMF symbiosis affects the majority of all tested yield components as well as a reduction of disease severity in both cultivars. Seeds of mycorrhizal pea plants showed strong responses of secondary metabolites with nutritional, medicinal, and pharmaceutical attributes, also involved in pathogen response. This is further supported by proteomic data, functionally determining those primary and secondary metabolic pathways, involved in pathogen response and induced upon AMF-colonization. The data also revealed cultivar specific effects of AMF symbiosis that increase understanding of genotype related differences. Additionally, a suite of proteins and secondary metabolites are presented, induced in seeds of P. sativum upon AMF-colonization and pathogen attack, and possibly involved in induced systemic resistance against D. pinodes, useful for modern breeding strategies implementing microsymbionts toward increased pathogen resistance.
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Affiliation(s)
- Nima Ranjbar Sistani
- Department of Ecogenomics and Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
| | - Getinet Desalegn
- Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Hans-Peter Kaul
- Department of Crop Sciences, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Stefanie Wienkoop
- Department of Ecogenomics and Systems Biology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
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33
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Papaianni M, Paris D, Woo SL, Fulgione A, Rigano MM, Parrilli E, Tutino ML, Marra R, Manganiello G, Casillo A, Limone A, Zoina A, Motta A, Lorito M, Capparelli R. Plant Dynamic Metabolic Response to Bacteriophage Treatment After Xanthomonas campestris pv. campestris Infection. Front Microbiol 2020; 11:732. [PMID: 32390981 PMCID: PMC7189621 DOI: 10.3389/fmicb.2020.00732] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 03/27/2020] [Indexed: 02/05/2023] Open
Abstract
Periodic epidemics of black rot disease occur worldwide causing substantial yield losses. Xanthomonas campestris pv. campestris (Xcc) represents one of the most common bacteria able to cause the above disease in cruciferous plants such as broccoli, cabbage, cauliflower, and Arabidopsis thaliana. In agriculture, several strategies are being developed to contain the Xanthomonas infection. The use of bacteriophages could represent a valid and efficient approach to overcome this widespread phenomenon. Several studies have highlighted the potential usefulness of implementing phage therapy to control plant diseases as well as Xcc infection. In the present study, we characterized the effect of a lytic phage on the plant Brassica oleracea var. gongylodes infected with Xcc and, for the first time, the correlated plant metabolic response. The results highlighted the potential benefits of bacteriophages: reduction of bacterium proliferation, alteration of the biofilm structure and/or modulation of the plant metabolism and defense response.
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Affiliation(s)
- Marina Papaianni
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
| | - Debora Paris
- Institute of Biomolecular Chemistry, National Research Council, Naples, Italy
| | - Sheridan L Woo
- Department of Pharmacy, University of Naples Federico II, Naples, Italy.,Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
| | - Andrea Fulgione
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy.,Istituto Zooprofilattico Sperimentale del Mezzogiorno, Naples, Italy
| | - Maria Manuela Rigano
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
| | - Ermenegilda Parrilli
- Department of Chemical Sciences, University of Naples Federico II, Naples, Italy
| | - Maria L Tutino
- Department of Chemical Sciences, University of Naples Federico II, Naples, Italy
| | - Roberta Marra
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
| | - Gelsomina Manganiello
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
| | - Angela Casillo
- Department of Chemical Sciences, University of Naples Federico II, Naples, Italy
| | - Antonio Limone
- Istituto Zooprofilattico Sperimentale del Mezzogiorno, Naples, Italy
| | - Astolfo Zoina
- Institute for Sustainable Plant Protection, National Research Council, Naples, Italy
| | - Andrea Motta
- Institute of Biomolecular Chemistry, National Research Council, Naples, Italy
| | - Matteo Lorito
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy.,Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
| | - Rosanna Capparelli
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy.,Task Force on Microbiome Studies, University of Naples Federico II, Naples, Italy
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34
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Zhou Q, Zhao S, Zhu J, Li F, Tong W, Liu S, Wei C. Transcriptomic analyses reveal a systemic defense role of the uninfested adjacent leaf in tea plant (Camellia sinensis) attacked by tea geometrids (Ectropis obliqua). Genomics 2020; 112:3658-3667. [PMID: 32169501 DOI: 10.1016/j.ygeno.2020.03.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 03/05/2020] [Accepted: 03/06/2020] [Indexed: 11/28/2022]
Abstract
To get a more detailed understanding of the interaction between tea plant (Camellia sinensis) and tea geometrids (Ectropis obliqua), transcriptomic profile in undamaged adjacent leaf (TGL) of tea geometrids fed local leaves (LL) was investigated for the first time. Here, approximately 245 million clean reads contained 39.39 Gb of sequence data were obtained from TGL. Further analysis revealed that systemic response was induced in TGL after tea geometrids feeding on LL, although the defense response was weaker than that in LL. The differentially expressed genes (DEGs) identification analysis showed little overlap of DEGs between TGL and LL. Comparative transcriptome analysis suggested that JA signal regulated resistant pathway was induced in LL; whereas primary metabolism pathway was activated in TGL in response to tea geometrids feeding. This study reveals a novel resistance mechanism of TGL to tea geometrids feeding.
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Affiliation(s)
- Qiying Zhou
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China; Henan Key Laboratory of Tea Plant Biology, College of Life Sciences, Xinyang Normal University, Xinyang, China; Institute for Conservation and Utilization of Agro-Bioresources in Dabie Mountains, College of Life Sciences, Xinyang Normal University, Xinyang, China
| | - Shiqi Zhao
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Junyan Zhu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Fangdong Li
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Wei Tong
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Shengrui Liu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China
| | - Chaoling Wei
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, China.
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Yoo H, Greene GH, Yuan M, Xu G, Burton D, Liu L, Marqués J, Dong X. Translational Regulation of Metabolic Dynamics during Effector-Triggered Immunity. MOLECULAR PLANT 2020; 13:88-98. [PMID: 31568832 PMCID: PMC6946852 DOI: 10.1016/j.molp.2019.09.009] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 09/09/2019] [Accepted: 09/16/2019] [Indexed: 05/03/2023]
Abstract
Recent studies have shown that global translational reprogramming is an early activation event in pattern-triggered immunity, when plants recognize microbe-associated molecular patterns. However, it is not fully known whether translational regulation also occurs in subsequent immune responses, such as effector-triggered immunity (ETI). In this study, we performed genome-wide ribosome profiling in Arabidopsis upon RPS2-mediated ETI activation and discovered that specific groups of genes were translationally regulated, mostly in coordination with transcription. These genes encode enzymes involved in aromatic amino acid, phenylpropanoid, camalexin, and sphingolipid metabolism. The functional significance of these components in ETI was confirmed by genetic and biochemical analyses. Our findings provide new insights into diverse translational regulation of plant immune responses and demonstrate that translational coordination of metabolic gene expression is an important strategy for ETI.
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Affiliation(s)
- Heejin Yoo
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA
| | - George H Greene
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA
| | - Meng Yuan
- National Key Laboratory of Crop Genetic Improvement, National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, 430070 Wuhan, China
| | - Guoyong Xu
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA
| | - Derek Burton
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA
| | - Lijing Liu
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA
| | - Jorge Marqués
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA
| | - Xinnian Dong
- Howard Hughes Medical Institute, Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA.
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Singh J, Fabrizio J, Desnoues E, Silva JP, Busch W, Khan A. Root system traits impact early fire blight susceptibility in apple (Malus × domestica). BMC PLANT BIOLOGY 2019; 19:579. [PMID: 31870310 PMCID: PMC6929320 DOI: 10.1186/s12870-019-2202-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Accepted: 12/12/2019] [Indexed: 05/14/2023]
Abstract
BACKGROUND Although it is known that resistant rootstocks facilitate management of fire blight disease, incited by Erwinia amylovora, the role of rootstock root traits in providing systemic defense against E. amylovora is unclear. In this study, the hypothesis that rootstocks of higher root vigor provide higher tolerance to fire blight infection in apples is tested. Several apple scion genotypes grafted onto a single rootstock genotype and non-grafted 'M.7' rootstocks of varying root vigor are used to assess phenotypic and molecular relationships between root traits of rootstocks and fire blight susceptibility of apple scion cultivars. RESULTS It is observed that different root traits display significant (p < 0.05) negative correlations with fire blight susceptibility. In fact, root surface area partially dictates differential levels of fire blight susceptibility of 'M.7' rootstocks. Furthermore, contrasting changes in gene expression patterns of diverse molecular pathways accompany observed differences in levels of root-driven fire blight susceptibility. It is noted that a singular co-expression gene network consisting of genes from defense, carbohydrate metabolism, protein kinase activity, oxidation-reduction, and stress response pathways modulates root-dependent fire blight susceptibility in apple. In particular, WRKY75 and UDP-glycotransferase are singled-out as hub genes deserving of further detailed analysis. CONCLUSIONS It is proposed that low root mass may incite resource-limiting conditions to activate carbohydrate metabolic pathways, which reciprocally interact with plant immune system genes to elicit differential levels of fire blight susceptibility.
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Affiliation(s)
- Jugpreet Singh
- Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA
| | - Jack Fabrizio
- Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA
| | - Elsa Desnoues
- Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA
| | - Julliany Pereira Silva
- Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA
| | - Wolfgang Busch
- Salk Institute for Biological Studies, Plant Molecular and Cellular Biology Laboratory, and Integrative Biology Laboratory, 10010 N Torrey Pines Rd, La Jolla, CA, 92037, USA
| | - Awais Khan
- Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA.
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37
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Velásquez-Valle R, Villa-Ruano N, Hidalgo-Martínez D, Zepeda-Vallejo LG, Pérez-Hernández N, Reyes-López CA, Reyes-Cervantes E, Medina-Melchor DL, Becerra-Martínez E. Revealing the 1H NMR metabolome of mirasol chili peppers (Capsicum annuum) infected by Candidatus Phytoplasma trifolii. Food Res Int 2019; 131:108863. [PMID: 32247466 DOI: 10.1016/j.foodres.2019.108863] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 11/21/2019] [Accepted: 11/23/2019] [Indexed: 01/07/2023]
Abstract
The infection of Capsicum annuum cv. mirasol by Candidatus Phytoplasma trifolii (16SrVI) causes devastating crop losses in northern Mexico. This study addresses the metabolomics profiling of mirasol chili peppers (Capsicum annuum cv. mirasol) infected by Candidatus Phytoplasma trifolii. For this study, 25 diseased fruits and 25 healthy fruits were used. Principal component analysis (PCA) and orthogonal projections to latent structures discriminant analysis (OPLS-DA) revealed dramatic changes in the content of 42 metabolites which were identified in diseased and healthy mirasol chili peppers. The endogenous levels of fructose, glucose and formic acid were substantially decreased in the diseased chili peppers. In the same group of samples, high concentrations of alanine, asparagine, fumaric acid, sucrose and threonine were observed. The content of Choline didńt present a significant difference. This evidence supports the fact that Candidatus Phytoplasma trifolii infection reduces de CO2 fixation into carbohydrates, decreases invertase activity, and inhibits glycolysis in the diseased plant tissues. The levels of ascorbic acid, capsaicin and dihydrocapsaicinin in diseased fruits were dramatically decreased, suggesting that Candidatus Phytoplasma trifolii can reduce the pungency and the nutraceutical value of mirasol chili peppers.
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Affiliation(s)
- Rodolfo Velásquez-Valle
- INIFAP-Campo Experimental Zacatecas, Km. 24.5 Carretera Zacatecas-Fresnillo. Apdo, Postal # 18, Calera de V. R., Zacatecas, México CP 98500, Mexico
| | - Nemesio Villa-Ruano
- CONACyT-Centro Universitario de Vinculación y Transferencia de Tecnología, Benemérita Universidad Autónoma de Puebla, CP 72570 Puebla, Mexico
| | - Diego Hidalgo-Martínez
- Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, MC-3102, Berkeley, CA 94720-3102, USA
| | - L Gerardo Zepeda-Vallejo
- Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prol. de Carpio y Plan de Ayala S/N, Col. Santo Tomás, Delegación Miguel Hidalgo, Ciudad de México 11340, Mexico
| | - Nury Pérez-Hernández
- Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Guillermo Massieu Helguera, No. 239, Fracc. "La Escalera", Ticomàn, Ciudad de México 07320, Mexico
| | - Cesar A Reyes-López
- Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Guillermo Massieu Helguera, No. 239, Fracc. "La Escalera", Ticomàn, Ciudad de México 07320, Mexico
| | - Eric Reyes-Cervantes
- Centro Universitario de Vinculación y Transferencia de Tecnología, Benemérita Universidad Autónoma de Puebla, CP 72570 Puebla, Mexico
| | - Diana L Medina-Melchor
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional, Av. Luis Enrique Erro S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, Ciudad de México 07738, Mexico
| | - Elvia Becerra-Martínez
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional, Av. Luis Enrique Erro S/N, Unidad Profesional Adolfo López Mateos, Zacatenco, Delegación Gustavo A. Madero, Ciudad de México 07738, Mexico.
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38
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Nieva AS, Vilas JM, Gárriz A, Maiale SJ, Menéndez AB, Erban A, Kopka J, Ruiz OA. The fungal endophyte Fusarium solani provokes differential effects on the fitness of two Lotus species. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 144:100-109. [PMID: 31561198 DOI: 10.1016/j.plaphy.2019.09.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Revised: 08/31/2019] [Accepted: 09/16/2019] [Indexed: 06/10/2023]
Abstract
The interactions established between plants and endophytic fungi span a continuum from beneficial to pathogenic associations. The aim of this work was to isolate potentially beneficial fungal endophytes in the legume Lotus tenuis and explore the mechanisms underlying their effects. One of the nine fungal strains isolated was identified as Fusarium solani and shows the highest phosphate-solubilisation activity, and also grows endophytically in roots of L. japonicus and L. tenuis. Interestingly, fungal invasion enhances plant growth in L. japonicus but provokes a contrasting effect in L. tenuis. These differences were also evidenced when the rate of photosynthesis as well as sugars and K contents were assessed. Our results indicate that the differential responses observed are due to distinct mechanisms deployed during the establishment of the interactions that involve the regulation of photosynthesis, potassium homeostasis, and carbohydrate metabolism. These responses are employed by these plant species to maintain fitness during the endophytic interaction.
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Affiliation(s)
- Amira Susana Nieva
- Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús (IIB-INTECH), Av. Intendente Marino km 8.2, Chascomús, 7130, Argentina
| | - Juan Manuel Vilas
- Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús (IIB-INTECH), Av. Intendente Marino km 8.2, Chascomús, 7130, Argentina
| | - Andrés Gárriz
- Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús (IIB-INTECH), Av. Intendente Marino km 8.2, Chascomús, 7130, Argentina
| | - Santiago Javier Maiale
- Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús (IIB-INTECH), Av. Intendente Marino km 8.2, Chascomús, 7130, Argentina
| | - Ana Bernardina Menéndez
- Departamento de Biodiversidad y Biología Facultad de Ciencias Exactas y Naturales Universidad de Buenos Aires, PROPLAME-PRHIDEB (CONICET), Argentina
| | - Alexander Erban
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany
| | - Joachim Kopka
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany
| | - Oscar Adolfo Ruiz
- Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús (IIB-INTECH), Av. Intendente Marino km 8.2, Chascomús, 7130, Argentina; Instituto de Fisiología y Recursos Genéticos Vegetales-Instituto Nacional de Tecnología Agropecuaria (IFRGV-INTA), Camino 60 cuadras km 5.5, Córdoba, 5119, Argentina.
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Twamley T, Gaffney M, Feechan A. A Microbial Fermentation Mixture Primes for Resistance Against Powdery Mildew in Wheat. FRONTIERS IN PLANT SCIENCE 2019; 10:1241. [PMID: 31649703 PMCID: PMC6794463 DOI: 10.3389/fpls.2019.01241] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Accepted: 09/05/2019] [Indexed: 05/23/2023]
Abstract
Since many fungal pathogens develop resistance to fungicides, novel and low-cost alternative methods to improve plant health and fitness need to be developed. An approach to improve productivity in crops is to stimulate the plant's own defence mechanisms via priming. Therefore, we investigated if a fermentation-based elicitor could prime plant defences against powdery mildew in wheat by inducing the expression of endogenous defence-related genes. Wheat seedlings were spray-treated with a fermentation-based elicitor 8 days prior to inoculation with powdery mildew. Disease assays showed a significantly reduced number of powdery mildew pustules were formed on wheat treated with the mixed elicitor. In vitro sensitivity assays tested the ability of powdery mildew conidia to germinate on agar amended with the fermentation-based product and concluded that fungal germination and differentiation were also inhibited. Tissue samples were taken at time points pertaining to different developmental stages of powdery mildew infection. Significantly higher expression of PR genes (PR1, PR4, PR5, and PR9) was observed in the microbial fermentation mixture-treated plants compared with untreated plants. These genes are often associated with the elicitation of plant defence responses to specific biotrophic pathogens, such as powdery mildew, suggesting an elicitor-mediated response in the wheat plants tested. The product components were assessed, and the components were found to act synergistically in the microbial fermentation mixture. Therefore, this fermentation-based elicitor provides an effective method for powdery mildew control.
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Affiliation(s)
- Tony Twamley
- School of Agriculture and Food Science, University College Dublin, Dublin, Ireland
| | - Mark Gaffney
- Alltech Crop Science, Alltech European Bioscience Centre, Dunboyne, Ireland
| | - Angela Feechan
- School of Agriculture and Food Science, University College Dublin, Dublin, Ireland
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40
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Wang G, Kong J, Cui D, Zhao H, Niu Y, Xu M, Jiang G, Zhao Y, Wang W. Resistance against Ralstonia solanacearum in tomato depends on the methionine cycle and the γ-aminobutyric acid metabolic pathway. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 97:1032-1047. [PMID: 30480846 DOI: 10.1111/tpj.14175] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Revised: 11/14/2018] [Accepted: 11/21/2018] [Indexed: 05/28/2023]
Abstract
Bacterial wilt caused by Ralstonia solanacearum is a complex and destructive disease that affects over 200 plant species. To investigate the interaction of R. solanacearum and its tomato (Solanum lycopersicum) plant host, a comparative proteomic analysis was conducted in tomato stems inoculated with highly and mildly aggressive R. solanacearum isolates (RsH and RsM, respectively). The results indicated a significant alteration of the methionine cycle (MTC) and downregulation of γ-aminobutyric acid (GABA) biosynthesis. Furthermore, transcriptome profiling of two key tissues (stem and root) at three stages (0, 3 and 5 days post-inoculation) with RsH in resistant and susceptible tomato plants is presented. Transcript profiles of MTC and GABA pathways were analyzed. Subsequently, the MTC-associated genes SAMS2, SAHH1 and MS1 and the GABA biosynthesis-related genes GAD2 and SSADH1 were knocked-down by virus-induced gene silencing and the plants' defense responses upon infection with R. solanacearum RsM and RsH were analyzed. These results showed that silencing of SAHH1, MS1 and GAD2 in tomato leads to decreased resistance against R. solanacearum. In summary, the infection assays, proteomic and transcriptomic data described in this study indicate that both MTC and GABA biosynthesis play an important role in pathogenic interaction between R. solanacearum and tomato plants.
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Affiliation(s)
- Guoping Wang
- College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
- Guangdong Provincial Key Lab of Vegetable Genomics and Molecular Breeding, College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
- Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in South China, Ministry of Agriculture, College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
| | - Jie Kong
- Key Laboratory of Protein Function and Regulation in Agricultural Organisms, College of Life Sciences, South China Agricultural University, Guangdong, Guangzhou, 510642, China
| | - Dandan Cui
- College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
- Guangdong Provincial Key Lab of Vegetable Genomics and Molecular Breeding, College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
| | - Hongbo Zhao
- College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
- Guangdong Provincial Key Lab of Vegetable Genomics and Molecular Breeding, College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
| | - Yu Niu
- Tropical Crops Genetic Resources Research Institute, CATAS, Hainan, Danzhou, 571700, China
| | - Mengyun Xu
- Guangdong Provincial Key Lab of Vegetable Genomics and Molecular Breeding, College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
| | - Gaofei Jiang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing, 210000, China
| | - Yahua Zhao
- Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in South China, Ministry of Agriculture, College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
| | - Wenyi Wang
- College of Horticulture, South China Agricultural University, Guangdong, Guangzhou, 510642, China
- Department of Plant Science, Weizmann Institute of Science, Rehovot, 76100, Israel
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41
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Schwachtje J, Whitcomb SJ, Firmino AAP, Zuther E, Hincha DK, Kopka J. Induced, Imprinted, and Primed Responses to Changing Environments: Does Metabolism Store and Process Information? FRONTIERS IN PLANT SCIENCE 2019; 10:106. [PMID: 30815006 PMCID: PMC6381073 DOI: 10.3389/fpls.2019.00106] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 01/23/2019] [Indexed: 05/21/2023]
Abstract
Metabolism is the system layer that determines growth by the rate of matter uptake and conversion into biomass. The scaffold of enzymatic reaction rates drives the metabolic network in a given physico-chemical environment. In response to the diverse environmental stresses, plants have evolved the capability of integrating macro- and micro-environmental events to be prepared, i.e., to be primed for upcoming environmental challenges. The hierarchical view on stress signaling, where metabolites are seen as final downstream products, has recently been complemented by findings that metabolites themselves function as stress signals. We present a systematic concept of metabolic responses that are induced by environmental stresses and persist in the plant system. Such metabolic imprints may prime metabolic responses of plants for subsequent environmental stresses. We describe response types with examples of biotic and abiotic environmental stresses and suggest that plants use metabolic imprints, the metabolic changes that last beyond recovery from stress events, and priming, the imprints that function to prepare for upcoming stresses, to integrate diverse environmental stress histories. As a consequence, even genetically identical plants should be studied and understood as phenotypically plastic organisms that continuously adjust their metabolic state in response to their individually experienced local environment. To explore the occurrence and to unravel functions of metabolic imprints, we encourage researchers to extend stress studies by including detailed metabolic and stress response monitoring into extended recovery phases.
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Affiliation(s)
- Jens Schwachtje
- Department of Molecular Physiology, Applied Metabolome Analysis, Max-Planck-Institute of Molecular Plant Physiology, Potsdam, Germany
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Wenke K, Kopka J, Schwachtje J, van Dongen JT, Piechulla B. Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana. PLANT BIOLOGY (STUTTGART, GERMANY) 2019; 21 Suppl 1:109-119. [PMID: 30030887 DOI: 10.1111/plb.12878] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Accepted: 07/18/2018] [Indexed: 05/24/2023]
Abstract
The emission of volatiles is a common, but mostly neglected, ability of bacteria that is important for inter- and intraspecific interactions. Currently, limited information is available on how the bacterial volatile (mVOC) signal is integrated into a plant's life at the physiological, transcriptional and metabolic level. Previous results provided evidence for volatile-dependent regulation of WRKY18, a pathogen-responsive transcription factor of Arabidopsis thaliana in co-culture with two rhizobacteria, Serratia plymuthica HRO-C48 and Stenotrophomonas maltophilia R3089. Dual cultures of these bacteria and A. thaliana; application of the common mVOC 2-phenyl-ethanol; extraction of metabolites of A. thaliana after exposure to bacterial volatiles; and analysis of the metabolomes (GC-TOF/MS) were carried out. The prominent microbial aromatic compound 2-phenyl-ethanol, emitted by both bacteria, negatively affects growth of A. thaliana wild type, whereas WRKY18 T-DNA insertion mutants were significantly more tolerant than wild-type seedlings. This paper also demonstrates for the first time the impact of the rhizobacterial volatiles on the metabolome of A. thaliana. Upon mVOC exposure the plants rearrange their metabolism by accumulation of e.g. amino acids and TCA intermediates that potentially allow plants to cope with and survive this stress. Our findings illustrate the high degree of complexity of metabolic rearrangements underlying the interactions of bacterial volatile elicitors and resulting plant responses. Furthermore, the impact of the volatile 2-phenyl-ethanol as a signal in the WRKY18-dependent pathway highlights this compound as an important molecular player.
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Affiliation(s)
- K Wenke
- Institute for Biological Sciences, University of Rostock, Rostock, Germany
| | - J Kopka
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - J Schwachtje
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - J T van Dongen
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - B Piechulla
- Institute for Biological Sciences, University of Rostock, Rostock, Germany
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Augustijn D, van Tol N, van der Zaal BJ, de Groot HJM, Alia A. High-resolution magic angle spinning NMR studies for metabolic characterization of Arabidopsis thaliana mutants with enhanced growth characteristics. PLoS One 2018; 13:e0209695. [PMID: 30596736 PMCID: PMC6312362 DOI: 10.1371/journal.pone.0209695] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Accepted: 12/10/2018] [Indexed: 02/07/2023] Open
Abstract
Developing smart crops which yield more biomass to meet the increasing demand for plant biomass has been an active area of research in last few decades. We investigated metabolic alterations in two Arabidopsis thaliana mutants with enhanced growth characteristics that were previously obtained from a collection of plant lines expressing artificial transcription factors. The metabolic profiles were obtained directly from intact Arabidopsis leaves using high-resolution magic angle spinning (HR-MAS) NMR. Multivariate analysis showed significant alteration of metabolite levels between the mutants and the wild-type Col-0. Interestingly, most of the metabolites that were reduced in the faster-growing mutants are generally involved in the defence against stress. These results suggest a growth-defence trade-off in the phenotypically engineered mutants. Our results further corroborate the idea that plant growth can be enhanced by suppressing defence pathways.
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Affiliation(s)
| | - Niels van Tol
- Institute of Biology Leiden, Leiden University, BE, Leiden, The Netherlands
| | | | - Huub J. M. de Groot
- Leiden Institute of Chemistry, Leiden University, RA Leiden, The Netherlands
| | - A. Alia
- Leiden Institute of Chemistry, Leiden University, RA Leiden, The Netherlands
- Institute of Medical Physics and Biophysics, University of Leipzig, Leipzig, Germany
- * E-mail:
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Geuss D, Lortzing T, Schwachtje J, Kopka J, Steppuhn A. Oviposition by Spodoptera exigua on Solanum dulcamara Alters the Plant's Response to Herbivory and Impairs Larval Performance. Int J Mol Sci 2018; 19:ijms19124008. [PMID: 30545097 PMCID: PMC6321313 DOI: 10.3390/ijms19124008] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Revised: 12/10/2018] [Accepted: 12/10/2018] [Indexed: 11/23/2022] Open
Abstract
Plant resistance traits against insect herbivores are extremely plastic. Plants respond not only to the herbivory itself, but also to oviposition by herbivorous insects. How prior oviposition affects plant responses to larval herbivory is largely unknown. Combining bioassays and defense protein activity assays with microarray analyses and metabolite profiling, we investigated the impact of preceding oviposition on the interaction of Solanum dulcamara with the generalist lepidopteran herbivore Spodoptera exigua at the levels of the plant’s resistance, transcriptome and metabolome. We found that oviposition increased plant resistance to the subsequent feeding larvae. While constitutive and feeding-induced levels of defensive protease inhibitor activity remained unaffected, pre-exposure to eggs altered S. dulcamara’s transcriptional and metabolic response to larval feeding in leaves local and systemic to oviposition. In particular, genes involved in phenylpropanoid metabolism were more strongly expressed in previously oviposited plants, which was reflected by reciprocal changes of primary metabolites upstream and within these pathways. Our data highlight that plants integrate signals from non-threatening life stages of their natural enemies to optimize their response when they become actually attacked. The observed transcriptional and metabolic reshaping of S. dulcamara’s response to S. exigua herbivory suggests a role of phenylpropanoids in oviposition-primed plant resistance.
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Affiliation(s)
- Daniel Geuss
- Molecular Ecology, Dahlem Centre of Plant Sciences, Institute of Biology/Freie Universität Berlin, Albrecht-Thaer Weg 6, 14195, Berlin, Germany.
| | - Tobias Lortzing
- Molecular Ecology, Dahlem Centre of Plant Sciences, Institute of Biology/Freie Universität Berlin, Albrecht-Thaer Weg 6, 14195, Berlin, Germany.
| | - Jens Schwachtje
- Applied Metabolome Analysis, Max-Planck-Institute for Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.
| | - Joachim Kopka
- Applied Metabolome Analysis, Max-Planck-Institute for Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.
| | - Anke Steppuhn
- Molecular Ecology, Dahlem Centre of Plant Sciences, Institute of Biology/Freie Universität Berlin, Albrecht-Thaer Weg 6, 14195, Berlin, Germany.
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Botero K, Restrepo S, Pinzón A. A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism. BMC Genomics 2018; 19:863. [PMID: 30537923 PMCID: PMC6288859 DOI: 10.1186/s12864-018-5192-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
BACKGROUND Phytophthora infestans is a plant pathogen that causes an important plant disease known as late blight in potato plants (Solanum tuberosum) and several other solanaceous hosts. This disease is the main factor affecting potato crop production worldwide. In spite of the importance of the disease, the molecular mechanisms underlying the compatibility between the pathogen and its hosts are still unknown. RESULTS To explain the metabolic response of late blight, specifically photosynthesis inhibition in infected plants, we reconstructed a genome-scale metabolic network of the S. tuberosum leaf, PstM1. This metabolic network simulates the effect of this disease in the leaf metabolism. PstM1 accounts for 2751 genes, 1113 metabolic functions, 1773 gene-protein-reaction associations and 1938 metabolites involved in 2072 reactions. The optimization of the model for biomass synthesis maximization in three infection time points suggested a suppression of the photosynthetic capacity related to the decrease of metabolic flux in light reactions and carbon fixation reactions. In addition, a variation pattern in the flux of carboxylation to oxygenation reactions catalyzed by RuBisCO was also identified, likely to be associated to a defense response in the compatible interaction between P. infestans and S. tuberosum. CONCLUSIONS In this work, we introduced simultaneously the first metabolic network of S. tuberosum and the first genome-scale metabolic model of the compatible interaction of a plant with P. infestans.
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Affiliation(s)
- Kelly Botero
- Grupo de Bioinformática y Biología de Sistemas, Universidad Nacional del Colombia - Instituto de Genética, Calle 53- Carrera 32, Edificio 426, Bogotá, Colombia.,Centro de Bioinformática y Biología Computacional, Manizales, Colombia
| | - Silvia Restrepo
- Laboratorio de Micología y Fitopatología, Universidad de los Andes, Bogotá, Colombia
| | - Andres Pinzón
- Grupo de Bioinformática y Biología de Sistemas, Universidad Nacional del Colombia - Instituto de Genética, Calle 53- Carrera 32, Edificio 426, Bogotá, Colombia.
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Balmer A, Pastor V, Glauser G, Mauch-Mani B. Tricarboxylates Induce Defense Priming Against Bacteria in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2018; 9:1221. [PMID: 30177948 PMCID: PMC6110165 DOI: 10.3389/fpls.2018.01221] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 07/31/2018] [Indexed: 05/24/2023]
Abstract
Exposure of plants to biotic stress results in an effective induction of numerous defense mechanisms that involve a vast redistribution within both primary and secondary metabolisms. For instance, an alteration of tricarboxylic acid (TCA) levels can accompany the increase of plant resistance stimulated by various synthetic and natural inducers. Moreover, components of the TCA flux may play a role during the set-up of plant defenses. In this study, we show that citrate and fumarate, two major components of the TCA cycle, are able to induce priming in Arabidopsis against the bacterial pathogen Pseudomonas syringae pv. tomato DC3000. Both citrate and fumarate show no direct antimicrobial effect and therefore enhanced bacterial resistance found in planta is solely based on the induction of the plant defense system. During the priming phase, both TCA intermediates did not induce any changes in transcript abundances of a set of defense genes, and in phytohormones and camalexin levels. However, at early time points of bacterial challenge, citrate induced a stronger salicylic acid and camalexin accumulation followed later by a boost of the jasmonic acid pathway. On the other hand, adaptations of hormonal pathways in fumarate-treated plants were more complex. While jasmonic acid was not induced, mutants impaired in jasmonic acid perception failed to mount a proper priming response induced by fumarate. Our results suggest that changes in carboxylic acid abundances can enhance Arabidopsis defense through complex signaling pathways. This highlights a promising feature of TCAs as novel defense priming agents and calls for further exploration in other pathosystems and stress situations.
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Affiliation(s)
- Andrea Balmer
- Laboratory of Molecular and Cell Biology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland
| | - Victoria Pastor
- Metabolic Integration and Cell Signaling Group, Plant Physiology Section, Department of CAMN, Universitat Jaume I, Castellon, Spain
| | - Gaetan Glauser
- Neuchâtel Platform of Analytical Chemistry, University of Neuchâtel, Neuchâtel, Switzerland
| | - Brigitte Mauch-Mani
- Laboratory of Molecular and Cell Biology, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland
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