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Isidoro-Ayza M, Lorch JM, Klein BS. The skin I live in: Pathogenesis of white-nose syndrome of bats. PLoS Pathog 2024; 20:e1012342. [PMID: 39207947 PMCID: PMC11361426 DOI: 10.1371/journal.ppat.1012342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024] Open
Abstract
The emergence of white-nose syndrome (WNS) in North America has resulted in mass mortalities of hibernating bats and total extirpation of local populations. The need to mitigate this disease has stirred a significant body of research to understand its pathogenesis. Pseudogymnoascus destructans, the causative agent of WNS, is a psychrophilic (cold-loving) fungus that resides within the class Leotiomycetes, which contains mainly plant pathogens and is unrelated to other consequential pathogens of animals. In this review, we revisit the unique biology of hibernating bats and P. destructans and provide an updated analysis of the stages and mechanisms of WNS progression. The extreme life history of hibernating bats, the psychrophilic nature of P. destructans, and its evolutionary distance from other well-characterized animal-infecting fungi translate into unique host-pathogen interactions, many of them yet to be discovered.
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Affiliation(s)
- Marcos Isidoro-Ayza
- Department of Pediatrics, Medicine and Medical Microbiology and Immunology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
| | - Jeffrey M. Lorch
- U.S. Geological Survey, National Wildlife Health Center, Madison, Wisconsin, United States of America
| | - Bruce S. Klein
- Department of Pediatrics, Medicine and Medical Microbiology and Immunology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
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2
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Hassan A, Tapp ZA, Tran DK, Rychtář J, Taylor D. Mathematical model of rabies vaccination in the United States. Theor Popul Biol 2024; 157:47-54. [PMID: 38521097 DOI: 10.1016/j.tpb.2024.03.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 03/15/2024] [Accepted: 03/20/2024] [Indexed: 03/25/2024]
Abstract
Rabies is one of the oldest viral diseases and it has been present on every continent except Antarctica. Within the U.S. human rabies cases are quite rare. In the eastern USA, raccoons are the main reservoir hosts and pet vaccination serves as an important barrier against human rabies exposure. In this paper, we develop a compartmental model for rabies transmission amongst raccoons and domestic pets. We find the disease-free equilibria, reproduction numbers for the raccoons and domestic pets. We also determine the vaccination coverage/rates, both for raccoons and pets, needed to achieve the elimination of rabies.
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Affiliation(s)
- Annalise Hassan
- Department of Biology, Virginia Commonwealth University, Richmond, VA 23284, USA.
| | - Zoe A Tapp
- Department of Biology, Virginia Commonwealth University, Richmond, VA 23284, USA.
| | - Dan K Tran
- Department of Computer Science, Virginia Commonwealth University, Richmond, VA 23284, USA.
| | - Jan Rychtář
- Department of Mathematics and Applied Mathematics, Virginia Commonwealth University, Richmond, VA 23284, USA.
| | - Dewey Taylor
- Department of Mathematics and Applied Mathematics, Virginia Commonwealth University, Richmond, VA 23284, USA.
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3
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Eskew EA, Olival KJ, Mazet JAK, Daszak P. A global-scale dataset of bat viral detection suggests that pregnancy reduces viral shedding. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.25.581969. [PMID: 38464184 PMCID: PMC10925100 DOI: 10.1101/2024.02.25.581969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
Understanding viral infection dynamics in wildlife hosts can help forecast zoonotic pathogen spillover and human disease risk. Bats are particularly important reservoirs of zoonotic viruses, including some of major public health concern such as Nipah virus, Hendra virus, and SARS-related coronaviruses. Previous work has suggested that metapopulation dynamics, seasonal reproductive patterns, and other bat life history characteristics might explain temporal variation in spillover of bat-associated viruses into people. Here, we analyze viral dynamics in free-ranging bat hosts, leveraging a multi-year, global-scale viral detection dataset that spans eight viral families and 96 bat species from 14 countries. We fit hierarchical Bayesian models that explicitly control for important sources of variation, including geographic region, specimen type, and testing protocols, while estimating the influence of reproductive status on viral detection in female bats. Our models revealed that late pregnancy had a negative effect on viral shedding across multiple data subsets, while lactation had a weaker influence that was inconsistent across data subsets. These results are unusual for mammalian hosts, but given recent findings that bats may have high individual viral loads and population-level prevalence due to dampening of antiviral immunity, we propose that it would be evolutionarily advantageous for pregnancy to either not further reduce immunity or actually increase the immune response, reducing viral load, shedding, and risk of fetal infection. This novel hypothesis would be valuable to test given its potential to help monitor, predict, and manage viral spillover risk from bats.
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Affiliation(s)
- Evan A. Eskew
- EcoHealth Alliance, New York, NY 10018, USA
- Institute for Interdisciplinary Data Sciences, University of Idaho, Moscow, ID 83844, USA
| | | | - Jonna A. K. Mazet
- One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | | | - PREDICT Consortium
- One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
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4
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Xia Q, Yang Y, Zhang Y, Zhou L, Ma X, Xiao C, Zhang J, Li Z, Liu K, Li B, Shao D, Qiu Y, Wei J, Ma Z. Shift in dominant genotypes of Japanese encephalitis virus and its impact on current vaccination strategies. Front Microbiol 2023; 14:1302101. [PMID: 38045034 PMCID: PMC10690641 DOI: 10.3389/fmicb.2023.1302101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 11/01/2023] [Indexed: 12/05/2023] Open
Abstract
Japanese encephalitis (JE) is a zoonotic ailment from the Japanese encephalitis virus (JEV). JEV belongs to the flavivirus genus and is categorized into a solitary serotype consisting of five genetically diverse genotypes (I, II, III, IV, and V). The JEV genotype III (GIII) was the prevailing strain responsible for multiple outbreaks in countries endemic to JEV until 1990. In recent years, significant improvements have occurred in the epidemiology of JE, encompassing the geographical expansion of the epidemic zone and the displacement of prevailing genotypes. The dominant genotype of the JEV has undergone a progressive shift from GIII to GI due to variations in its adaptability within avian populations. From 2021 to 2022, Australia encountered an epidemic of viral encephalitis resulting from infection with the GIV JEV pathogen. The current human viral encephalitis caused by GIV JEV is the initial outbreak since its initial discovery in Indonesia during the late 1970s. Furthermore, following a time frame of 50 years, the detection and isolation of GV JEV have been reported in Culex mosquitoes across China and South Korea. Evidence suggests that the prevalence of GIV and GV JEV epidemic regions may be on the rise, posing a significant threat to public safety and the sustainable growth of animal husbandry. The global approach to preventing and managing JE predominantly revolves around utilizing the GIII strain vaccine for vaccination purposes. Nevertheless, research has demonstrated that the antibodies generated by the GIII strain vaccine exhibit limited capacity to neutralize the GI and GV strains. Consequently, these antibodies cannot protect against JEV challenge caused by animal GI and GV strains. The limited cross-protective and neutralizing effects observed between various genotypes may be attributed to the low homology of the E protein with other genotypes. In addition, due to the GIV JEV outbreak in Australia, further experiments are needed to evaluate the protective efficiency of the current GIII based JE vaccine against GIV JEV. The alteration of the prevailing genotype of JEV and the subsequent enlargement of the geographical extent of the epidemic have presented novel obstacles in JE prevention and control. This paper examines the emerging features of the JE epidemic in recent years and the associated problems concerning prevention and control.
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Affiliation(s)
- Qiqi Xia
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Yang Yang
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Yan Zhang
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
- College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, China
| | - Lujia Zhou
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Xiaochun Ma
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Changguang Xiao
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Junjie Zhang
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Zongjie Li
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Ke Liu
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Beibei Li
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Donghua Shao
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Yafeng Qiu
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Jianchao Wei
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
| | - Zhiyong Ma
- Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China
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5
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Cuyutupa VR, Moser D, Diedrich V, Cheng Y, Billaud JN, Haugg E, Singer D, Bereiter-Hahn J, Herwig A, Choukér A. Blood transcriptomics mirror regulatory mechanisms during hibernation-a comparative analysis of the Djungarian hamster with other mammalian species. Pflugers Arch 2023; 475:1149-1160. [PMID: 37542567 PMCID: PMC10499953 DOI: 10.1007/s00424-023-02842-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 06/13/2023] [Accepted: 07/11/2023] [Indexed: 08/07/2023]
Abstract
Hibernation enables many species of the mammalian kingdom to overcome periods of harsh environmental conditions. During this physically inactive state metabolic rate and body temperature are drastically downregulated, thereby reducing energy requirements (torpor) also over shorter time periods. Since blood cells reflect the organism´s current condition, it was suggested that transcriptomic alterations in blood cells mirror the torpor-associated physiological state. Transcriptomics on blood cells of torpid and non-torpid Djungarian hamsters and QIAGEN Ingenuity Pathway Analysis (IPA) revealed key target molecules (TMIPA), which were subjected to a comparative literature analysis on transcriptomic alterations during torpor/hibernation in other mammals. Gene expression similarities were identified in 148 TMIPA during torpor nadir among various organs and phylogenetically different mammalian species. Based on TMIPA, IPA network analyses corresponded with described inhibitions of basic cellular mechanisms and immune system-associated processes in torpid mammals. Moreover, protection against damage to the heart, kidney, and liver was deduced from this gene expression pattern in blood cells. This study shows that blood cell transcriptomics can reflect the general physiological state during torpor nadir. Furthermore, the understanding of molecular processes for torpor initiation and organ preservation may have beneficial implications for humans in extremely challenging environments, such as in medical intensive care units and in space.
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Affiliation(s)
- Valeria Rojas Cuyutupa
- Laboratory of Translational Research 'Stress and Immunity', Department of Anesthesiology, LMU Hospital, Ludwig-Maximilians-Universität in Munich, Marchioninistr. 15, Munich, 81377, Germany
| | - Dominique Moser
- Laboratory of Translational Research 'Stress and Immunity', Department of Anesthesiology, LMU Hospital, Ludwig-Maximilians-Universität in Munich, Marchioninistr. 15, Munich, 81377, Germany
| | - Victoria Diedrich
- Institute of Neurobiology, Ulm University, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Yiming Cheng
- Gene Center and Department of Biochemistry, Ludwig-Maximilians-Universität in Munich, Munich, Germany
- Institute for Diabetes and Obesity, Helmholtz, Munich, Neuherberg, Germany
| | | | - Elena Haugg
- Institute of Neurobiology, Ulm University, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Dominique Singer
- Division of Neonatology and Pediatric Critical Care Medicine, University Medical Center Eppendorf, Hamburg, Germany
| | - Jürgen Bereiter-Hahn
- Institute for Cell Biology and Neurosciences, Goethe University Frankfurt, Frankfurt am Main, Germany
| | - Annika Herwig
- Institute of Neurobiology, Ulm University, Albert-Einstein-Allee 11, 89081, Ulm, Germany.
| | - Alexander Choukér
- Laboratory of Translational Research 'Stress and Immunity', Department of Anesthesiology, LMU Hospital, Ludwig-Maximilians-Universität in Munich, Marchioninistr. 15, Munich, 81377, Germany.
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6
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Chang WS, Wille M. Winter is coming-The role of seasonality through the lens of the rodent virome. Mol Ecol 2023; 32:4709-4712. [PMID: 37455332 DOI: 10.1111/mec.17078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 06/06/2023] [Accepted: 07/05/2023] [Indexed: 07/18/2023]
Abstract
Rodent virus communities (viromes) are overrepresented with zoonotic viruses, and as such are a key host system for the study of zoonotic viruses. However, the extent of viral diversity beyond characterized zoonotic viruses, and the factors that modulate the viromes of rodents remain opaque. In this issue of Molecular Ecology, Raghwani et al. (2023) use rodents as a model to understand the role of seasonality in dictating virome abundance and composition-a factor known to play an important role in most animal one-host, one-pathogen systems. These data are not only highly relevant to rodents, but have broad applications across understanding and disentangling animal virome ecology.
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Affiliation(s)
- Wei-Shan Chang
- Health and Biosecurity, Commonwealth Scientific and Industrial Research Organisation, Canberra, Australian Capital Territory, Australia
| | - Michelle Wille
- Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, New South Wales, Australia
- Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia
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7
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Raghwani J, Faust CL, François S, Nguyen D, Marsh K, Raulo A, Hill SC, Parag KV, Simmonds P, Knowles SCL, Pybus OG. Seasonal dynamics of the wild rodent faecal virome. Mol Ecol 2023; 32:4763-4776. [PMID: 36367339 PMCID: PMC7614976 DOI: 10.1111/mec.16778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 09/23/2022] [Accepted: 11/03/2022] [Indexed: 11/13/2022]
Abstract
Viral discovery studies in wild animals often rely on cross-sectional surveys at a single time point. As a result, our understanding of the temporal stability of wild animal viromes remains poorly resolved. While studies of single host-virus systems indicate that host and environmental factors influence seasonal virus transmission dynamics, comparable insights for whole viral communities in multiple hosts are lacking. Utilizing noninvasive faecal samples from a long-term wild rodent study, we characterized viral communities of three common European rodent species (Apodemus sylvaticus, A. flavicollis and Myodes glareolus) living in temperate woodland over a single year. Our findings indicate that a substantial fraction of the rodent virome is seasonally transient and associated with vertebrate or bacteria hosts. Further analyses of one of the most common virus families, Picornaviridae, show pronounced temporal changes in viral richness and evenness, which were associated with concurrent and up to ~3-month lags in host density, ambient temperature, rainfall and humidity, suggesting complex feedbacks from the host and environmental factors on virus transmission and shedding in seasonal habitats. Overall, this study emphasizes the importance of understanding the seasonal dynamics of wild animal viromes in order to better predict and mitigate zoonotic risks.
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Affiliation(s)
- Jayna Raghwani
- Department of BiologyUniversity of OxfordOxfordUK
- Department of Pathobiology and Population SciencesThe Royal Veterinary CollegeLondonUK
| | - Christina L. Faust
- Institute of Biodiversity, Animal Health, and Comparative MedicineUniversity of GlasgowGlasgowUK
| | | | - Dung Nguyen
- Nuffield Department of MedicineUniversity of OxfordOxfordUK
| | - Kirsty Marsh
- School of BiosciencesUniversity of ExeterExeterUK
| | - Aura Raulo
- Department of BiologyUniversity of OxfordOxfordUK
- University of TurkuTurkuFinland
| | - Sarah C. Hill
- Department of Pathobiology and Population SciencesThe Royal Veterinary CollegeLondonUK
| | | | - Peter Simmonds
- Nuffield Department of MedicineUniversity of OxfordOxfordUK
| | | | - Oliver G. Pybus
- Department of BiologyUniversity of OxfordOxfordUK
- Department of Pathobiology and Population SciencesThe Royal Veterinary CollegeLondonUK
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8
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Ukonaho S, Berger V, Franco dos Santos DJ, Htut W, Aung HH, Nyeing UK, Reichert S, Lummaa V. Seasonal variation in molecular and physiological stress markers in Asian elephants. CONSERVATION PHYSIOLOGY 2023; 11:coad029. [PMID: 38026806 PMCID: PMC10660384 DOI: 10.1093/conphys/coad029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 04/17/2023] [Accepted: 04/24/2023] [Indexed: 12/01/2023]
Abstract
Free-living species exhibit seasonal variation in various life history traits, including vital rates such as birth and death patterns. Different physiological mechanisms are thought to underlie the expression of life history traits that contribute to lifetime fitness. However, although the broad impacts of seasonality on life history traits and trade-offs is well established in many systems, the exact physiological mechanisms responsible for driving differences within and between individuals are poorly understood. Among them, molecular and physiological stress pathways, such as stress hypothalamic-pituitary-adrenal axis and oxidative stress, have potential to mediate relationships between individual survival, reproduction and environmental seasonality. Here, we determine how different physiological markers of stress including faecal cortisol metabolites (FCMs), heterophils/lymphocytes (H/L) ratio, two markers indicating oxidative balance including a marker of oxidative damage (reactive oxygen metabolites, ROM) and a marker of antioxidant defences (superoxide dismutase, SOD) and body weight vary in a large semi-captive population of Asian elephants (Elephas maximus) exposed to extreme seasonality (e.g. elevated temperatures). Individuals showed higher FCM levels and H/L ratios during cold season, indicating increased stress, and the lowest FCM levels during monsoon season and H/L ratios during hot and dry season, but we found no pattern in oxidative stress (ROM and SOD) levels. Hot season also associated with a decline in body weight. The present study shows how different physiological parameters (FCM levels and H/L ratio), molecular (oxidative stress) and body condition vary with seasonal changes, and how these parameters might allow individuals to adapt to such variations. Our results on an endangered long-lived species are crucial in indicating the most productive timing for conservation efforts, predicting how individuals cope with environmental changes, and allow for a more accurate representation of how animal physiology operates in nature.
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Affiliation(s)
- Susanna Ukonaho
- Department of Biology, University of Turku, Vesilinnantie, 5, Turku 20014, Finland
| | - Vérane Berger
- Department of Biology, University of Turku, Vesilinnantie, 5, Turku 20014, Finland
| | | | - Win Htut
- Myanma Timber Enterprise, MONREC, Myanmar
| | | | | | - Sophie Reichert
- Department of Biology, University of Turku, Vesilinnantie, 5, Turku 20014, Finland
| | - Virpi Lummaa
- Department of Biology, University of Turku, Vesilinnantie, 5, Turku 20014, Finland
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Kim Y, Leopardi S, Scaravelli D, Zecchin B, Priori P, Festa F, Drzewnioková P, De Benedictis P, Nouvellet P. Transmission dynamics of lyssavirus in Myotis myotis: mechanistic modelling study based on longitudinal seroprevalence data. Proc Biol Sci 2023; 290:20230183. [PMID: 37072038 PMCID: PMC10113028 DOI: 10.1098/rspb.2023.0183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2023] Open
Abstract
We investigated the transmission dynamics of lyssavirus in Myotis myotis and Myotis blythii, using serological, virological, demographic and ecological data collected between 2015 and 2022 from two maternity colonies in northern Italian churches. Despite no lyssavirus detection in 556 bats sampled over 11 events by reverse transcription-polymerase chain reaction (RT-PCR), 36.3% of 837 bats sampled over 27 events showed neutralizing antibodies to European bat lyssavirus 1, with a significant increase in summers. By fitting sets of mechanistic models to seroprevalence data, we investigated factors that influenced lyssavirus transmission within and between years. Five models were selected as a group of final models: in one model, a proportion of exposed bats (median model estimate: 5.8%) became infectious and died while the other exposed bats recovered with immunity without becoming infectious; in the other four models, all exposed bats became infectious and recovered with immunity. The final models supported that the two colonies experienced seasonal outbreaks driven by: (i) immunity loss particularly during hibernation, (ii) density-dependent transmission, and (iii) a high transmission rate after synchronous birthing. These findings highlight the importance of understanding ecological factors, including colony size and synchronous birthing timing, and potential infection heterogeneities to enable more robust assessments of lyssavirus spillover risk.
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Affiliation(s)
- Younjung Kim
- Department of Evolution, Behaviour, and Environment, School of Life Sciences, University of Sussex, BN1 9RH Brighton, UK
| | - Stefania Leopardi
- FAO and National Reference Centre for Rabies, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, Legnaro, 35020 Padua, Italy
| | - Dino Scaravelli
- S.T.E.R.N.A. and Museo Ornitologico 'F. Foschi', via Pedrali 12, 47121 Forlì, Italy
- Department of Biological, Geological and Environmental Sciences, University of Bologna, via Selmi 3, 40126 Bologna, Italy
| | - Barbara Zecchin
- FAO and National Reference Centre for Rabies, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, Legnaro, 35020 Padua, Italy
| | - Pamela Priori
- S.T.E.R.N.A. and Museo Ornitologico 'F. Foschi', via Pedrali 12, 47121 Forlì, Italy
| | - Francesca Festa
- FAO and National Reference Centre for Rabies, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, Legnaro, 35020 Padua, Italy
| | - Petra Drzewnioková
- FAO and National Reference Centre for Rabies, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, Legnaro, 35020 Padua, Italy
| | - Paola De Benedictis
- FAO and National Reference Centre for Rabies, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, Legnaro, 35020 Padua, Italy
| | - Pierre Nouvellet
- Department of Evolution, Behaviour, and Environment, School of Life Sciences, University of Sussex, BN1 9RH Brighton, UK
- Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, SW7 2AZ London, UK
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10
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Szentivanyi T, McKee C, Jones G, Foster JT. Trends in Bacterial Pathogens of Bats: Global Distribution and Knowledge Gaps. Transbound Emerg Dis 2023. [DOI: 10.1155/2023/9285855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
Abstract
Bats have received considerable recent attention for infectious disease research because of their potential to host and transmit viruses, including Ebola, Hendra, Nipah, and multiple coronaviruses. These pathogens are occasionally transmitted from bats to wildlife, livestock, and to humans, directly or through other bridging (intermediate) hosts. Due to their public health relevance, zoonotic viruses are a primary focus of research attention. In contrast, other emerging pathogens of bats, such as bacteria, are vastly understudied despite their ubiquity and diversity. Here, we describe the currently known host ranges and geographic distributional patterns of potentially zoonotic bacterial genera in bats, using published presence-absence data of pathogen occurrence. We identify apparent gaps in our understanding of the distribution of these pathogens on a global scale. The most frequently detected bacterial genera in bats are Bartonella, Leptospira, and Mycoplasma. However, a wide variety of other potentially zoonotic bacterial genera are also occasionally found in bats, such as Anaplasma, Brucella, Borrelia, Coxiella, Ehrlichia, Francisella, Neorickettsia, and Rickettsia. The bat families Phyllostomidae, Vespertilionidae, and Pteropodidae are most frequently reported as hosts of bacterial pathogens; however, the presence of at least one bacterial genus was confirmed in all 15 bat families tested. On a spatial scale, molecular diagnostics of samples from 58 countries and four overseas departments and island states (French Guiana, Mayotte, New Caledonia, and Réunion Island) reported testing for at least one bacterial pathogen in bats. We also identified geographical areas that have been mostly neglected during bacterial pathogen research in bats, such as the Afrotropical region and Southern Asia. Current knowledge on the distribution of potentially zoonotic bacterial genera in bats is strongly biased by research effort towards certain taxonomic groups and geographic regions. Identifying these biases can guide future surveillance efforts, contributing to a better understanding of the ecoepidemiology of zoonotic pathogens in bats.
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11
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Hill SC, François S, Thézé J, Smith AL, Simmonds P, Perrins CM, van der Hoek L, Pybus OG. Impact of host age on viral and bacterial communities in a waterbird population. THE ISME JOURNAL 2023; 17:215-226. [PMID: 36319706 PMCID: PMC9860062 DOI: 10.1038/s41396-022-01334-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 10/03/2022] [Accepted: 10/11/2022] [Indexed: 11/07/2022]
Abstract
Wildlife harbour pathogens that can harm human or livestock health and are the source of most emerging infectious diseases. It is rarely considered how changes in wildlife population age-structures or how age-stratified behaviours might alter the level of pathogen detection within a species, or risk of spillover to other species. Micro-organisms that occur in healthy animals can be an important model for understanding and predicting the dynamics of pathogens of greater health concern, which are hard to study in wild populations due to their relative rarity. We therefore used a metagenomic approach to jointly characterise viral and prokaryotic carriage in faeces collected from a healthy wild bird population (Cygnus olor; mute swan) that has been subject to long-term study. Using 223 samples from known individuals allowed us to compare differences in prokaryotic and eukaryotic viral carriage between adults and juveniles at an unprecedented level of detail. We discovered and characterised 77 novel virus species, of which 21% belong putatively to bird-infecting families, and described the core prokaryotic microbiome of C. olor. Whilst no difference in microbiota diversity was observed between juveniles and adult individuals, 50% (4/8) of bird-infecting virus families (picornaviruses, astroviruses, adenoviruses and bornaviruses) and 3.4% (9/267) of prokaryotic families (including Helicobacteraceae, Spirochaetaceae and Flavobacteriaceae families) were differentially abundant and/or prevalent between juveniles and adults. This indicates that perturbations that affect population age-structures of wildlife could alter circulation dynamics and spillover risk of microbes, potentially including pathogens.
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Affiliation(s)
- Sarah C Hill
- Department of Pathobiology and Population Sciences, Royal Veterinary College, London, UK.
- Department of Biology, University of Oxford, Oxford, UK.
| | - Sarah François
- Department of Biology, University of Oxford, Oxford, UK.
| | - Julien Thézé
- Department of Biology, University of Oxford, Oxford, UK
- UMR EPIA, Université Clermont Auvergne, INRAE, VetAgro Sup, Saint-Genès-Champanelle, France
| | - Adrian L Smith
- Department of Biology, University of Oxford, Oxford, UK
- Nuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford, UK
| | - Peter Simmonds
- Nuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford, UK
| | | | - Lia van der Hoek
- Amsterdam Institute for Infection and Immunity, Amsterdam, The Netherlands
- Laboratory of Experimental Virology, Department of Medical Microbiology and Infection Prevention, Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands
| | - Oliver G Pybus
- Department of Pathobiology and Population Sciences, Royal Veterinary College, London, UK.
- Department of Biology, University of Oxford, Oxford, UK.
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Starkloff NC, Civitello DJ. Cascading impacts of host seasonal adaptation on parasitism. Trends Parasitol 2022; 38:942-949. [PMID: 36088213 PMCID: PMC9588794 DOI: 10.1016/j.pt.2022.08.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 08/16/2022] [Accepted: 08/17/2022] [Indexed: 01/13/2023]
Abstract
The persistence of parasite populations through harsh seasonal bouts is often critical to circannual disease outbreaks. Parasites have a diverse repertoire of phenotypes for persistence, ranging from transitioning to a different life stage better suited to within-host dormancy to utilizing weather-hardy structures external to hosts. While these adaptive traits allow parasite species to survive through harsh seasons, it is often at survival rates that threaten population persistence. We argue that these periods of parasite (and vector) population busts could be ideal targets for disease intervention. As climate change portends abbreviated host dormancy and extended transmission periods in many host-parasite systems, it is essential to identify novel pathways to shore up current disease-intervention strategies.
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13
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Jacquot M, Wallace MA, Streicker DG, Biek R. Geographic Range Overlap Rather than Phylogenetic Distance Explains Rabies Virus Transmission among Closely Related Bat Species. Viruses 2022; 14:v14112399. [PMID: 36366496 PMCID: PMC9697534 DOI: 10.3390/v14112399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 10/27/2022] [Accepted: 10/27/2022] [Indexed: 01/31/2023] Open
Abstract
The cross-species transmission (CST) of pathogens can have dramatic consequences, as highlighted by recent disease emergence events affecting human, animal and plant health. Understanding the ecological and evolutionary factors that increase the likelihood of disease agents infecting and establishing in a novel host is therefore an important research area. Previous work across different pathogens, including rabies virus (RABV), found that increased evolutionary distance between hosts reduces the frequency of cross-species transmission and of permanent host shifts. However, whether this effect of host relatedness still holds for transmission among recently diverged hosts is not well understood. We aimed to ask if high host relatedness can still increase the probability of a host shift between more recently diverged hosts, and the importance of this effect relative to ecological predictors. We first addressed this question by quantifying the CST frequency of RABV between North American bat species within the genus Myotis, using a multi-decade data set containing 128 nucleoprotein (N) RABV sequences from ten host species. We compared RABV CST frequency within Myotis to the rates of CST between nine genera of North American bat species. We then examined whether host relatedness or host range overlap better explains the frequency of CST seen between Myotis species. We found that at the within genus scale, host range overlap, rather than host relatedness best explains the frequency of CST events. Moreover, we found evidence of CST occurring among a higher proportion of species, and CST more frequently resulting in sustained transmission in the novel host in the Myotis dataset compared to the multi-genus dataset. Our results suggest that among recently diverged species, the ability to infect a novel host is no longer restricted by physiological barriers but instead is limited by physical contact. Our results improve predictions of where future CST events for RABV might occur and clarify the relationship between host divergence and pathogen emergence.
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Affiliation(s)
- Maude Jacquot
- School of Biodiversity, One Health and Veterinary Medicine, Boyd Orr Centre for Population and Ecosystem Health, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
- Correspondence: (M.J.); (R.B.)
| | - Megan A. Wallace
- School of Biodiversity, One Health and Veterinary Medicine, Boyd Orr Centre for Population and Ecosystem Health, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Daniel G. Streicker
- School of Biodiversity, One Health and Veterinary Medicine, Boyd Orr Centre for Population and Ecosystem Health, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
- Centre for Virus Research, MRC-University of Glasgow, Glasgow G61 1QH, UK
| | - Roman Biek
- School of Biodiversity, One Health and Veterinary Medicine, Boyd Orr Centre for Population and Ecosystem Health, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
- Correspondence: (M.J.); (R.B.)
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14
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Drivers of Spatial Expansions of Vampire Bat Rabies in Colombia. Viruses 2022; 14:v14112318. [PMID: 36366416 PMCID: PMC9697077 DOI: 10.3390/v14112318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 10/13/2022] [Accepted: 10/17/2022] [Indexed: 11/05/2022] Open
Abstract
Spatial expansions of vampire bat-transmitted rabies (VBR) are increasing the risk of lethal infections in livestock and humans in Latin America. Identifying the drivers of these expansions could improve current approaches to surveillance and prevention. We aimed to identify if VBR spatial expansions are occurring in Colombia and test factors associated with these expansions. We analyzed 2336 VBR outbreaks in livestock reported to the National Animal Health Agency (Instituto Colombiano Agropecuario-ICA) affecting 297 municipalities from 2000-2019. The area affected by VBR changed through time and was correlated to the reported number of outbreaks each year. Consistent with spatial expansions, some municipalities reported VBR outbreaks for the first time each year and nearly half of the estimated infected area in 2010-2019 did not report outbreaks in the previous decade. However, the number of newly infected municipalities decreased between 2000-2019, suggesting decelerating spatial expansions. Municipalities infected later had lower cattle populations and were located further from the local reporting offices of the ICA. Reducing the VBR burden in Colombia requires improving vaccination coverage in both endemic and newly infected areas while improving surveillance capacity in increasingly remote areas with lower cattle populations where rabies is emerging.
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15
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Rissmann M, Friedrichs V, Kley N, Straube M, Sadeghi B, Balkema-Buschmann A. Baseline of Physiological Body Temperature and Hematological Parameters in Captive Rousettus aegyptiacus and Eidolon helvum Fruit Bats. Front Physiol 2022; 13:910157. [PMID: 36105294 PMCID: PMC9465388 DOI: 10.3389/fphys.2022.910157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 06/16/2022] [Indexed: 11/30/2022] Open
Abstract
The discovery of bats as reservoir hosts for a number of highly pathogenic zoonotic agents has led to an increasing interest of infectious disease research in experimental studies with bats. Therefore, we established breeding colonies of Rousettus aegyptiacus and Eidolon helvum fruit bats, which both have been identified as reservoir hosts for relevant zoonotic disease agents, such as Marburg virus and Lagos bat virus. Since 2013, individuals of both species have been recruited to the Friedrich-Loeffler-Institut (FLI) from zoological gardens in Europe, to where these species had been introduced from the wild several decades ago. The aviaries have been designed according to national recommendations published by the Federal Ministry of Agriculture. Under these conditions, both species have been reproducing for years. To better understand the physiology of these animals, and to generate baseline knowledge for infection experiments, we monitored the body core temperatures of R. aegyptiacus bats in the aviaries, and found a circadian variation between 34°C and 41.5°C. We also determined the hematological parameters of both species, and detected specific differences between both bat species. For values of clinical chemistry, no correlation to age or sex was observed. However, species-specific differences were detected since ALT, BUN and CREA were found to be significantly higher in R. aegyptiacus and GLU and TP were significantly higher in E. helvum bats. A higher hematocrit, hemoglobin and red blood cell level was observed in subadult R. aegyptiacus, with hemoglobin and red blood cells also being significantly increased compared to E. helvum. Lymphocytes were found to be the dominant white blood cells in both species and are higher in female E. helvum. Neutrophil granulocytes were significantly higher in E. helvum bats. This underlines the necessity to define baseline profiles for each bat species prior to their use in experimental challenge.
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Affiliation(s)
- Melanie Rissmann
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald, Germany
- Department of Viroscience, Erasmus MC, Rotterdam, Netherlands
| | | | - Nils Kley
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald, Germany
| | - Martin Straube
- Landratsamt Ortenaukreis, Amt für Veterinärwesen und Lebensmittelüberwachung, Offenburg, Germany
| | - Balal Sadeghi
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald, Germany
| | - Anne Balkema-Buschmann
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald, Germany
- *Correspondence: Anne Balkema-Buschmann,
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16
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Abstract
Bats perform important ecological roles in our ecosystem. However, recent studies have demonstrated that bats are reservoirs of emerging viruses that have spilled over into humans and agricultural animals to cause severe diseases. These viruses include Hendra and Nipah paramyxoviruses, Ebola and Marburg filoviruses, and coronaviruses that are closely related to severe acute respiratory syndrome coronavirus (SARS-CoV), Middle East respiratory syndrome coronavirus (MERS-CoV), and the recently emerged SARS-CoV-2. Intriguingly, bats that are naturally or experimentally infected with these viruses do not show clinical signs of disease. Here we have reviewed ecological, behavioral, and molecular factors that may influence the ability of bats to harbor viruses. We have summarized known zoonotic potential of bat-borne viruses and stress on the need for further studies to better understand the evolutionary relationship between bats and their viruses, along with discovering the intrinsic and external factors that facilitate the successful spillover of viruses from bats.
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Affiliation(s)
- Victoria Gonzalez
- Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK S7N 5E3, Canada
- Department of Veterinary Microbiology, University of Saskatchewan, Saskatoon, SK S7N 5B4, Canada
| | - Arinjay Banerjee
- Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK S7N 5E3, Canada
- Department of Veterinary Microbiology, University of Saskatchewan, Saskatoon, SK S7N 5B4, Canada
- Department of Biology, University of Waterloo, Waterloo, ON N2L 3G1, Canada
- Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON M5S 1A8, Canada
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17
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Linhart P, Bandouchova H, Zukal J, Votýpka J, Baláž V, Heger T, Kalocsanyiova V, Kubickova A, Nemcova M, Sedlackova J, Seidlova V, Veitova L, Vlaschenko A, Divinova R, Pikula J. Blood Parasites and Health Status of Hibernating and Non-Hibernating Noctule Bats (Nyctalus noctula). Microorganisms 2022; 10:microorganisms10051028. [PMID: 35630470 PMCID: PMC9143927 DOI: 10.3390/microorganisms10051028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 05/09/2022] [Accepted: 05/12/2022] [Indexed: 11/16/2022] Open
Abstract
Co-existence of bats with a wide range of infectious agents relates to their co-evolutionary history and specific physiology. Here, we examined blood samples collected during hibernation and the post-hibernation period to assess the influence of trypanosomes and babesias on the health status of 50 Noctule bats (Nyctalus noctula) using nested PCR. The impact of blood parasites on health was assessed by analysis of haematology and blood chemistry parameters in 21 bats. Prevalence of trypanosomes (Trypanosoma dionisii and T. vespertilionis) and babesia (Babesia vesperuginis) was 44% and 8%, respectively. Analysis of blood parameters indicated impact of babesia on acid–base balance. Blood chemistry parameters showed a significant decrease in total dissolved carbon dioxide and bicarbonate, increased anion gap, and no change in blood pH, suggesting compensated metabolic acidosis. Adverse effects of babesia were only apparent in hibernating bats. Our results suggest differences in the pathogenicity of trypanosomes and babesia in bats. While trypanosomes in general had no significant impact on the health status, we observed alterations in the blood acid–base balance in Babesia-infected bats during hibernation. Despite being infected, Babesia-positive bats survived hibernation without showing any clinical signs.
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Affiliation(s)
- Petr Linhart
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
- Department of Animal Protection and Welfare and Veterinary Public Health, University of Veterinary Sciences, 61242 Brno, Czech Republic
| | - Hana Bandouchova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
- Correspondence: ; Tel.: +420-541-562-653
| | - Jan Zukal
- Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, 60365 Brno, Czech Republic;
- Department of Botany and Zoology, Masaryk University, 61137 Brno, Czech Republic;
| | - Jan Votýpka
- Department of Parasitology, Faculty of Science, Charles University, 12800 Prague, Czech Republic;
- Biology Centre, Institute of Parasitology, Czech Academy of Sciences, 37005 České Budějovice, Czech Republic
| | - Vojtech Baláž
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Tomas Heger
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Vendula Kalocsanyiova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Aneta Kubickova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Monika Nemcova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Jana Sedlackova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Veronika Seidlova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Lucie Veitova
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
| | - Anton Vlaschenko
- Bat Rehabilitation Center of Feldman Ecopark, Lisne, 62340 Kharkiv, Ukraine;
| | - Renata Divinova
- Department of Botany and Zoology, Masaryk University, 61137 Brno, Czech Republic;
| | - Jiri Pikula
- Department of Ecology and Diseases of Zoo Animals, Game, Fish and Bees, University of Veterinary Sciences, 61242 Brno, Czech Republic; (P.L.); (V.B.); (T.H.); (V.K.); (A.K.); (M.N.); (J.S.); (V.S.); (L.V.); (J.P.)
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18
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Djomsi DM, Mba Djonzo FA, Ndong Bass I, Champagne M, Lacroix A, Thaurignac G, Esteban A, De Nys H, Bourgarel M, Akoachere JF, Delaporte E, Ayouba A, Cappelle J, Mpoudi Ngole E, Peeters M. Dynamics of Antibodies to Ebolaviruses in an Eidolon helvum Bat Colony in Cameroon. Viruses 2022; 14:560. [PMID: 35336967 PMCID: PMC8951055 DOI: 10.3390/v14030560] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 02/24/2022] [Accepted: 02/25/2022] [Indexed: 11/16/2022] Open
Abstract
The ecology of ebolaviruses is still poorly understood and the role of bats in outbreaks needs to be further clarified. Straw-colored fruit bats (Eidolon helvum) are the most common fruit bats in Africa and antibodies to ebolaviruses have been documented in this species. Between December 2018 and November 2019, samples were collected at approximately monthly intervals in roosting and feeding sites from 820 bats from an Eidolon helvum colony. Dried blood spots (DBS) were tested for antibodies to Zaire, Sudan, and Bundibugyo ebolaviruses. The proportion of samples reactive with GP antigens increased significantly with age from 0-9/220 (0-4.1%) in juveniles to 26-158/225 (11.6-70.2%) in immature adults and 10-225/372 (2.7-60.5%) in adult bats. Antibody responses were lower in lactating females. Viral RNA was not detected in 456 swab samples collected from 152 juvenile and 214 immature adult bats. Overall, our study shows that antibody levels increase in young bats suggesting that seroconversion to Ebola or related viruses occurs in older juvenile and immature adult bats. Multiple year monitoring would be needed to confirm this trend. Knowledge of the periods of the year with the highest risk of Ebolavirus circulation can guide the implementation of strategies to mitigate spill-over events.
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Affiliation(s)
- Dowbiss Meta Djomsi
- Laboratoire de Virologie-Cremer, Institut de Recherches Médicales et d’Études des Plantes Médicinales (IMPM), Yaoundé P.O. Box 13033, Cameroon; (D.M.D.); (F.A.M.D.); (I.N.B.)
| | - Flaubert Auguste Mba Djonzo
- Laboratoire de Virologie-Cremer, Institut de Recherches Médicales et d’Études des Plantes Médicinales (IMPM), Yaoundé P.O. Box 13033, Cameroon; (D.M.D.); (F.A.M.D.); (I.N.B.)
| | - Innocent Ndong Bass
- Laboratoire de Virologie-Cremer, Institut de Recherches Médicales et d’Études des Plantes Médicinales (IMPM), Yaoundé P.O. Box 13033, Cameroon; (D.M.D.); (F.A.M.D.); (I.N.B.)
| | - Maëliss Champagne
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
| | - Audrey Lacroix
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
| | - Guillaume Thaurignac
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
| | - Amandine Esteban
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
| | - Helene De Nys
- ASTRE, CIRAD, Harare, Zimbabwe; (H.D.N.); (M.B.)
- ASTRE, CIRAD, INRAE, University of Montpellier, 34398 Montpellier, France
| | - Mathieu Bourgarel
- ASTRE, CIRAD, Harare, Zimbabwe; (H.D.N.); (M.B.)
- ASTRE, CIRAD, INRAE, University of Montpellier, 34398 Montpellier, France
| | - Jane-Francis Akoachere
- Department of Microbiology and Parasitology, University of Buea, Buea P.O. Box 63, Cameroon; (J.-F.A.); (J.C.)
| | - Eric Delaporte
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
| | - Ahidjo Ayouba
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
| | - Julien Cappelle
- Department of Microbiology and Parasitology, University of Buea, Buea P.O. Box 63, Cameroon; (J.-F.A.); (J.C.)
| | - Eitel Mpoudi Ngole
- Laboratoire de Virologie-Cremer, Institut de Recherches Médicales et d’Études des Plantes Médicinales (IMPM), Yaoundé P.O. Box 13033, Cameroon; (D.M.D.); (F.A.M.D.); (I.N.B.)
| | - Martine Peeters
- Transvihmi, Institut de Recherche pour le Développement (IRD), University of Montpellier, Inserm, 34394 Montpellier, France; (M.C.); (A.L.); (G.T.); (A.E.); (E.D.); (A.A.)
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19
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Danczak RE, Sengupta A, Fansler SJ, Chu RK, Garayburu-Caruso VA, Renteria L, Toyoda J, Wells J, Stegen JC. Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly. Front Microbiol 2022; 13:803420. [PMID: 35250925 PMCID: PMC8894727 DOI: 10.3389/fmicb.2022.803420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 01/14/2022] [Indexed: 11/23/2022] Open
Abstract
Understanding the mechanisms underlying the assembly of communities has long been the goal of many ecological studies. While several studies have evaluated community wide ecological assembly, fewer have focused on investigating the impacts of individual members within a community or assemblage on ecological assembly. Here, we adapted a previous null model β-nearest taxon index (βNTI) to measure the contribution of individual features within an ecological community to overall assembly. This new metric, called feature-level βNTI (βNTIfeat), enables researchers to determine whether ecological features (e.g., individual microbial taxa) contribute to divergence, convergence, or have insignificant impacts across spatiotemporally resolved metacommunities or meta-assemblages. Using βNTIfeat, we revealed that unclassified microbial lineages often contributed to community divergence while diverse groups (e.g., Crenarchaeota, Alphaproteobacteria, and Gammaproteobacteria) contributed to convergence. We also demonstrate that βNTIfeat can be extended to other ecological assemblages such as organic molecules comprising organic matter (OM) pools. OM had more inconsistent trends compared to the microbial community though CHO-containing molecular formulas often contributed to convergence, while nitrogen and phosphorus-containing formulas contributed to both convergence and divergence. A network analysis was used to relate βNTIfeat values from the putatively active microbial community and the OM assemblage and examine potentially common contributions to ecological assembly across different communities/assemblages. This analysis revealed that P-containing formulas often contributed to convergence/divergence separately from other ecological features and N-containing formulas often contributed to assembly in coordination with microorganisms. Additionally, members of Family Geobacteraceae were often observed to contribute to convergence/divergence in conjunction with both N- and P-containing formulas, suggesting a coordinated ecological role for family members and the nitrogen/phosphorus cycle. Overall, we show that βNTIfeat offers opportunities to investigate the community or assemblage members, which shape the phylogenetic or functional landscape, and demonstrate the potential to evaluate potential points of coordination across various community types.
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Affiliation(s)
- Robert E. Danczak
- Ecosystem Sciences, Pacific Northwest National Laboratory, Richland, WA, United States
- *Correspondence: Robert E. Danczak,
| | - Aditi Sengupta
- Department of Biology, California Lutheran University, Thousand Oaks, CA, United States
| | - Sarah J. Fansler
- Ecosystem Sciences, Pacific Northwest National Laboratory, Richland, WA, United States
| | - Rosalie K. Chu
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, United States
| | | | - Lupita Renteria
- Ecosystem Sciences, Pacific Northwest National Laboratory, Richland, WA, United States
| | - Jason Toyoda
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, United States
| | - Jacqueline Wells
- Ecosystem Sciences, Pacific Northwest National Laboratory, Richland, WA, United States
| | - James C. Stegen
- Ecosystem Sciences, Pacific Northwest National Laboratory, Richland, WA, United States
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20
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Schaeffer R, Temeeyasen G, Hause BM. Alphacoronaviruses Are Common in Bats in the Upper Midwestern United States. Viruses 2022; 14:v14020184. [PMID: 35215778 PMCID: PMC8877427 DOI: 10.3390/v14020184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Revised: 01/13/2022] [Accepted: 01/17/2022] [Indexed: 02/05/2023] Open
Abstract
Bats are a reservoir for coronaviruses (CoVs) that periodically spill over to humans, as evidenced by severe acute respiratory syndrome coronavirus (SARS-CoV) and SARS-CoV-2. A collection of 174 bat samples originating from South Dakota, Minnesota, Iowa, and Nebraska submitted for rabies virus testing due to human exposure were analyzed using a pan-coronavirus PCR. A previously partially characterized CoV, Eptesicus bat CoV, was identified in 12 (6.9%) samples by nested RT-PCR. Six near-complete genomes were determined. Genetic analysis found a high similarity between all CoV-positive samples, Rocky Mountain bat CoV 65 and alphacoronavirus HCQD-2020 recently identified in South Korea. Phylogenetic analysis of genome sequences showed EbCoV is closely related to bat CoV HKU2 and swine acute diarrhea syndrome CoV; however, topological incongruences were noted for the spike gene that was more closely related to porcine epidemic diarrhea virus. Similar to some alphaCoVs, a novel gene, ORF7, was discovered downstream of the nucleocapsid, whose protein lacked similarity to known proteins. The widespread circulation of EbCoV with similarities to bat viruses that have spilled over to swine warrants further surveillance.
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21
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Klein A, Eggerbauer E, Potratz M, Zaeck LM, Calvelage S, Finke S, Müller T, Freuling CM. Comparative pathogenesis of different phylogroup I bat lyssaviruses in a standardized mouse model. PLoS Negl Trop Dis 2022; 16:e0009845. [PMID: 35041652 PMCID: PMC8797209 DOI: 10.1371/journal.pntd.0009845] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Revised: 01/28/2022] [Accepted: 12/14/2021] [Indexed: 12/24/2022] Open
Abstract
A plethora of bat-associated lyssaviruses potentially capable of causing the fatal disease rabies are known today. Transmitted via infectious saliva, occasionally-reported spillover infections from bats to other mammals demonstrate the permeability of the species-barrier and highlight the zoonotic potential of bat-related lyssaviruses. However, it is still unknown whether and, if so, to what extent, viruses from different lyssavirus species vary in their pathogenic potential. In order to characterize and systematically compare a broader group of lyssavirus isolates for their viral replication kinetics, pathogenicity, and virus release through saliva-associated virus shedding, we used a mouse infection model comprising a low (102 TCID50) and a high (105 TCID50) inoculation dose as well as three different inoculation routes (intramuscular, intranasal, intracranial). Clinical signs, incubation periods, and survival were investigated. Based on the latter two parameters, a novel pathogenicity matrix was introduced to classify lyssavirus isolates. Using a total of 13 isolates from ten different virus species, this pathogenicity index varied within and between virus species. Interestingly, Irkut virus (IRKV) and Bokeloh bat lyssavirus (BBLV) obtained higher pathogenicity scores (1.14 for IRKV and 1.06 for BBLV) compared to rabies virus (RABV) isolates ranging between 0.19 and 0.85. Also, clinical signs differed significantly between RABV and other bat lyssaviruses. Altogether, our findings suggest a high diversity among lyssavirus isolates concerning survival, incubation period, and clinical signs. Virus shedding significantly differed between RABVs and other lyssaviruses. Our results demonstrated that active shedding of infectious virus was exclusively associated with two RABV isolates (92% for RABV-DogA and 67% for RABV-Insectbat), thus providing a potential explanation as to why sustained spillovers are solely attributed to RABVs. Interestingly, 3D imaging of a selected panel of brain samples from bat-associated lyssaviruses demonstrated a significantly increased percentage of infected astrocytes in mice inoculated with IRKV (10.03%; SD±7.39) compared to RABV-Vampbat (2.23%; SD±2.4), and BBLV (0.78%; SD±1.51), while only individual infected cells were identified in mice infected with Duvenhage virus (DUVV). These results corroborate previous studies on RABV that suggest a role of astrocyte infection in the pathogenicity of lyssaviruses. Globally, there are at present 17 different officially recognized lyssavirus species posing a potential threat for human and animal health. Bats have been identified as carriers for the vast majority of those zoonotic viruses, which cause the fatal disease rabies and are transmitted through infectious saliva. The occurrence of sporadic spillover events where lyssaviruses are spread from bats to other mammalian species highlights the importance of studying pathogenicity and virus shedding in regard to a potentially sustained onward cross-species transmission. Therefore, as part of this study, we compared 13 different isolates from ten lyssavirus species in a standardized mouse infection model, focusing on clinical signs, incubation periods, and survival. Based on the latter two, a novel pathogenicity index to classify different lyssavirus species was established. This pathogenicity index varied within and between different lyssavirus species and revealed a higher ranking of other bat-related lyssaviruses in comparison to the tested Rabies virus (RABV) isolates. Altogether, our results demonstrate a high diversity among the investigated isolates concerning pathogenicity and clinical picture. Furthermore, we comparatively analyzed virus shedding via saliva and while there was no indication towards a reduced pathogenicity of bat-associated lyssaviruses as opposed to RABV, shedding was increased in RABV isolates. Additionally, we investigated neuronal cell tropism and revealed that bat lyssaviruses are not only capable of infecting neurons but also astrocytes.
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Affiliation(s)
- Antonia Klein
- Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Elisa Eggerbauer
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Madlin Potratz
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Luca M. Zaeck
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Sten Calvelage
- Institute of Diagnostic Virology, Federal Research Institute for Animal Health, Friedrich-Loeffler-Institut (FLI), Greifswald-Insel Riems, Germany
| | - Stefan Finke
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
| | - Conrad M. Freuling
- Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany
- * E-mail:
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22
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Dwyer G, Mihaljevic JR, Dukic V. Can Eco-Evo Theory Explain Population Cycles in the Field? Am Nat 2022; 199:108-125. [DOI: 10.1086/717178] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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23
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Caetano-Anollés K, Hernandez N, Mughal F, Tomaszewski T, Caetano-Anollés G. The seasonal behaviour of COVID-19 and its galectin-like culprit of the viral spike. METHODS IN MICROBIOLOGY 2021; 50:27-81. [PMID: 38620818 PMCID: PMC8590929 DOI: 10.1016/bs.mim.2021.10.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Seasonal behaviour is an attribute of many viral diseases. Like other 'winter' RNA viruses, infections caused by the causative agent of COVID-19, SARS-CoV-2, appear to exhibit significant seasonal changes. Here we discuss the seasonal behaviour of COVID-19, emerging viral phenotypes, viral evolution, and how the mutational landscape of the virus affects the seasonal attributes of the disease. We propose that the multiple seasonal drivers behind infectious disease spread (and the spread of COVID-19 specifically) are in 'trade-off' relationships and can be better described within a framework of a 'triangle of viral persistence' modulated by the environment, physiology, and behaviour. This 'trade-off' exists as one trait cannot increase without a decrease in another. We also propose that molecular components of the virus can act as sensors of environment and physiology, and could represent molecular culprits of seasonality. We searched for flexible protein structures capable of being modulated by the environment and identified a galectin-like fold within the N-terminal domain of the spike protein of SARS-CoV-2 as a potential candidate. Tracking the prevalence of mutations in this structure resulted in the identification of a hemisphere-dependent seasonal pattern driven by mutational bursts. We propose that the galectin-like structure is a frequent target of mutations because it helps the virus evade or modulate the physiological responses of the host to further its spread and survival. The flexible regions of the N-terminal domain should now become a focus for mitigation through vaccines and therapeutics and for prediction and informed public health decision making.
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Affiliation(s)
| | - Nicolas Hernandez
- Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois, Urbana, IL, United States
| | - Fizza Mughal
- Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois, Urbana, IL, United States
| | - Tre Tomaszewski
- Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois, Urbana, IL, United States
| | - Gustavo Caetano-Anollés
- Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois, Urbana, IL, United States
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24
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Hoarau AOG, Goodman SM, Al Halabi D, Ramasindrazana B, Lagadec E, Le Minter G, Köster M, Dos Santos A, Schoeman MC, Gudo ES, Mavingui P, Lebarbenchon C. Investigation of astrovirus, coronavirus and paramyxovirus co-infections in bats in the western Indian Ocean. Virol J 2021; 18:205. [PMID: 34641936 PMCID: PMC8506490 DOI: 10.1186/s12985-021-01673-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 09/28/2021] [Indexed: 11/10/2022] Open
Abstract
Co-infections have a key role in virus transmission in wild reservoir hosts. We investigated the simultaneous presence of astroviruses, coronaviruses, and paramyxoviruses in bats from Madagascar, Mayotte, Mozambique, and Reunion Island. A total of 871 samples from 28 bat species representing 8 families were tested by polymerase chain reactions (PCRs) targeting the RNA-dependent RNA-polymerase genes. Overall, 2.4% of bats tested positive for the presence of at least two viruses, only on Madagascar and in Mozambique. Significant variation in the proportion of co-infections was detected among bat species, and some combinations of co-infection were more common than others. Our findings support that co-infections of the three targeted viruses occur in bats in the western Indian Ocean region, although further studies are needed to assess their epidemiological consequences.
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Affiliation(s)
- Axel O G Hoarau
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France.
| | - Steven M Goodman
- Association Vahatra, Antananarivo, Madagascar.,Field Museum of Natural History, Chicago, USA
| | - Dana Al Halabi
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Beza Ramasindrazana
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France.,Association Vahatra, Antananarivo, Madagascar.,Institut Pasteur de Madagascar, Antananarivo 101, BP 1274, Ambatofotsikely, Madagascar
| | - Erwan Lagadec
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Gildas Le Minter
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Marie Köster
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | | | - M Corrie Schoeman
- School of Life Sciences, University of Kwa-Zulu Natal, Kwa-Zulu Natal, South Africa
| | | | - Patrick Mavingui
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
| | - Camille Lebarbenchon
- Processus Infectieux en Milieu Insulaire Tropical, INSERM 1187, CNRS 9192, IRD 249, Université de La Réunion, Sainte-Clotilde, La Réunion, France
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25
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Gupta P, Singh MP, Goyal K, Tripti P, Ansari MI, Obli Rajendran V, Dhama K, Malik YS. Bats and viruses: a death-defying friendship. Virusdisease 2021; 32:467-479. [PMID: 34518804 PMCID: PMC8426161 DOI: 10.1007/s13337-021-00716-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 06/19/2021] [Indexed: 01/10/2023] Open
Abstract
Bats have a primeval evolutionary origin and have adopted various survival methods. They have played a central role in the emergence of various viral diseases. The sustenance of a plethora of virus species inside them has been an earnest area of study. This review explains how the evolution of viruses in bats has been linked to their metabolic pathways, flight abilities, reproductive abilities and colonization behaviors. The utilization of host immune response by DNA and RNA viruses is a commencement of the understanding of differences in the impact of viral infection in bats from other mammals. Rabies virus and other lyssa viruses have had long documented history as bat viruses. While many others like Ebola virus, Nipah virus, Hantavirus, SARS-CoV, MERS-CoV and other new emerging viruses like Sosuga virus, Menangle and Tioman virus are now being studied extensively for their transmission in new hosts. The ongoing pandemic SARS-CoV-2 virus has also been implicated to be originated from bats. Certain factors have been linked to spillover events while the scope of entitlement of other conditions in the spread of diseases from bats still exists. However, certain physiological and ecological parameters have been linked to specific transmission patterns, and more definite proofs are awaited for establishing these connections.
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Affiliation(s)
- Parakriti Gupta
- Postgraduate Institute of Medical Education and Research, Chandigarh, India
| | - Mini P. Singh
- Postgraduate Institute of Medical Education and Research, Chandigarh, India
| | - Kapil Goyal
- Postgraduate Institute of Medical Education and Research, Chandigarh, India
| | - Pande Tripti
- Biological Standardization Division, ICAR-Indian Veterinary Research Institute (ICAR-IVRI), Izatnagar, Bareilly, Uttar Pradesh 243 122 India
| | - Mohd Ikram Ansari
- Department of Biosciences, Integral University, Dasauli, Kursi Road, Lucknow, Uttar Pradesh 226026 India
| | - Vinodhkumar Obli Rajendran
- Division of Epidemiology, ICAR-Indian Veterinary Research Institute (ICAR-IVRI), Izatnagar, Bareilly, Uttar Pradesh 243 122 India
| | - Kuldeep Dhama
- Division of Pathology, ICAR-Indian Veterinary Research Institute (ICAR-IVRI), Izatnagar, Bareilly, Uttar Pradesh 243 122 India
| | - Yashpal Singh Malik
- College of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Sciences University (GADVASU), Ludhiana, Punjab 141 004 India
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26
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Lu WG, Ai D, Song H, Xie Y, Liu S, Zhu W, Yang J. Epidemiological and numerical simulation of rabies spreading from canines to various human populations in mainland China. PLoS Negl Trop Dis 2021; 15:e0009527. [PMID: 34260584 PMCID: PMC8312940 DOI: 10.1371/journal.pntd.0009527] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 07/26/2021] [Accepted: 06/01/2021] [Indexed: 11/18/2022] Open
Abstract
BACKGROUND The mortality of humans due to rabies in China has been declining in recent years, but it is still a significant public health problem. According to the global framework, China strives to achieve the goal of eliminating human rabies before 2030. METHODS We reviewed the epidemiology of human deaths from rabies in mainland China from 2004 to 2018. We identified high risk regions, age and occupational groups, and used a continuous deterministic susceptibility-exposure-infection-recovery (SEIR) model with periodic transmission rate to explore seasonal rabies prevalence in different human populations. The SEIR model was used to simulate the data of human deaths from rabies reported by the Chinese Center for Disease Control and Prevention (China CDC). We calculated the relative transmission intensity of rabies from canines to different human groups, and they provided a reliable epidemiological basis for further control and prevention of human rabies. RESULTS Results showed that human deaths from rabies exhibited regional differences and seasonal characteristics in mainland China. The annual human death from rabies in different regions, age groups and occupational groups decreased steadily across time. Nevertheless, the decreasing rates and the calculated R0s of canines of various human groups were different. The transmission intensity of rabies from canines to human populations was the highest in the central regions of China, in people over 45 years old, and in farmers. CONCLUSIONS Although the annual cases of human deaths from rabies have decreased steadily since 2007, the proportion of human deaths from rabies varies with region, age, gender, and occupation. Further enhancement of public awareness and immunization status in high-risk population groups and blocking the transmission routes of rabies from canines to humans are necessary. The concept of One Health should be abided and human, animal, and environmental health should be considered simultaneously to achieve the goal of eradicating human rabies before 2030.
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Affiliation(s)
- Wen-gao Lu
- School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Danni Ai
- School of Optics and Photonics, Beijing Institute of Technology, Beijing, China
| | - Hong Song
- School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Yuan Xie
- National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Shuqing Liu
- National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
- * E-mail: (SL); (WZ); (JY)
| | - Wuyang Zhu
- National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
- * E-mail: (SL); (WZ); (JY)
| | - Jian Yang
- School of Optics and Photonics, Beijing Institute of Technology, Beijing, China
- * E-mail: (SL); (WZ); (JY)
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27
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RELATEDNESS AND GENETIC STRUCTURE OF BIG BROWN BAT (EPTESICUS FUSCUS) MATERNITY COLONIES IN AN URBAN-WILDLAND INTERFACE WITH PERIODIC RABIES VIRUS OUTBREAKS. J Wildl Dis 2021; 57:303-312. [PMID: 33822144 DOI: 10.7589/jwd-d-20-00112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Accepted: 09/23/2020] [Indexed: 11/20/2022]
Abstract
Big brown bats (Eptesicus fuscus) are the bat species in North America most frequently found to be rabid because of their high rate of human contact and thus submissions for rabies testing, of which, 4-5% are positive. The social behavior of big brown bats during the summer months may drive space use and potential viral exposure to conspecifics and mesocarnivores. We collected 88 unique genetic samples via buccal swabs from big brown bats captured at four maternity roosts surrounding a golf course during the summer of 2013. We used seven microsatellite loci to estimate genetic relatedness among individuals and genetic structure within and among colonies to infer whether females selected roosts based on kinship and used genetics and radio telemetry to determine the frequency of roost switching. We found roost switching through genetics and telemetry, and no evidence of elevated genetic relatedness within colonies or genetic structure among colonies. Social cohesion based on relatedness may not act to constrain the pathogen to a particular roost area, and thus, geographic mobility may increase viral exposure of bats in neighboring areas.
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28
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Attendance of adult males at maternity roosts of big brown bats ( Eptesicus fuscus). J Mammal 2021. [DOI: 10.1093/jmammal/gyaa136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Adult male big brown bats (Eptesicus fuscus) sometimes occur within maternity roosts. We investigated male attendance at big brown bat maternity roosts in a Colorado study area that shows a pattern of sexual segregation by elevation. We tested multiple predictions of three nonmutually exclusive hypotheses to explain male attendance patterns: 1) sex-specific differences in energetic strategies of males and females are maintained at the lower elevation; 2) natal philopatry of inexperienced young males accounts for most attendants; 3) males gain a reproductive advantage for late summer mating at maternity roosts. We tested predictions based on captures of bats at emergence, automated monitoring of annual, seasonal, and daily roost attendance by known-age bats tagged with passive integrated transponders, and anatomical evidence for mating. Findings were most consistent with the first two hypotheses. Adult males accounted for just 3.1% of 8,192 captures of bats at 285 evening emergences from 46 roosts during 2001–2005. Daily attendance rates of males during each active season (0.10 detections/day at age 1 year and 0.20 detections/day at ≥ 2 years old) were lower than in females (0.34 at age 1 year and 0.45 at ≥ 2 years old). Only 92 of 299 males tagged as volant juveniles were detected as adults at five maternity roosts monitored 2002–2005, far fewer than female returns in every age category. We detected known-age adult males almost exclusively at their natal roosts and most males that returned (91 of 92) in years after tagging as juveniles were first detected as 1-year-olds; 20 of 21 individuals that returned at 2–4 years of age were previously detected as 1-year-olds. One-year-old males were re-encountered at annual rates 5–16 times higher than 2- to 4-year-old males, and 1-year-old males and females had lower daily attendance rates than older bats. The male reproductive advantage hypothesis was not well supported. None of 80 females examined in late summer had evidence of insemination, and not all males showed distended scrota. Daily attendance rates of tagged adult males (n = 155) and females (n = 788) were lowest during late summer, suggesting that little reproductive advantage was accrued by males utilizing maternity roosts. Attendance of male big brown bats at maternity roosts at our study area is consistent with the sex-specific energetic strategies and natal philopatry hypotheses, and mating probably occurs at higher elevation autumn roosts and hibernacula.
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29
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Iglesias R, Cox-Witton K, Field H, Skerratt LF, Barrett J. Australian Bat Lyssavirus: Analysis of National Bat Surveillance Data from 2010 to 2016. Viruses 2021; 13:v13020189. [PMID: 33513882 PMCID: PMC7911197 DOI: 10.3390/v13020189] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 01/12/2021] [Accepted: 01/15/2021] [Indexed: 11/16/2022] Open
Abstract
Australian bat lyssavirus (ABLV) was first described in 1996 and has been regularly detected in Australian bats since that time. While the virus does not cause population level impacts in bats and has minimal impacts on domestic animals, it does pose a public health risk. For this reason, bats are monitored for ABLV and a national dataset is collated and maintained by Wildlife Health Australia. The 2010–2016 dataset was analysed using logistic regression and time-series analysis to identify predictors of infection status in bats and the factors associated with human exposure to bats. In common with previous passive surveillance studies, we found that little red flying-foxes (Pteropus scapulatus) are more likely than other species to be infected with ABLV. In the four Australian mainland species of flying-fox, there are seasonal differences in infection risk that may be associated with reproductive cycles, with summer and autumn the seasons of greatest risk. The risk of human contact was also seasonal, with lower risk in winter. In line with other studies, we found that the circumstances in which the bat is encountered, such as exhibiting abnormal behaviour or being grounded, are risk factors for ABLV infection and human contact and should continue be key components of public health messaging. We also found evidence of biased recording of some types of information, which made interpretation of some findings more challenging. Strengthening of “One Health” linkages between public health and animal health services at the operational level could help overcome these biases in future, and greater harmonisation nationally would increase the value of the dataset.
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Affiliation(s)
- Rachel Iglesias
- Australian Government Department of Agriculture, Water and the Environment, Canberra, ACT 2600, Australia
- Correspondence: ; Tel.: +61-2-6272-5975
| | | | - Hume Field
- EcoHealth Alliance, New York, NY 10018, USA;
- School of Veterinary Science, The University of Queensland, Gatton, QLD 4072, Australia
| | - Lee F. Skerratt
- One Health Research Group, Melbourne Veterinary School, University of Melbourne, Parkville, VIC 3010, Australia;
| | - Janine Barrett
- Queensland Department of Agriculture and Fisheries, Brisbane, QLD 4000, Australia;
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30
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Wang X, Wang H, Li MY. Modeling Rabies Transmission in Spatially Heterogeneous Environments via [Formula: see text]-diffusion. Bull Math Biol 2021; 83:16. [PMID: 33433727 DOI: 10.1007/s11538-020-00857-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 12/31/2020] [Indexed: 10/22/2022]
Abstract
Rabies among dogs remains a considerable risk to humans and constitutes a serious public health concern in many parts of the world. Conventional mathematical models for rabies typically assume homogeneous environments, with a standard diffusion term for the population of rabid animals. It has recently been recognized, however, that spatial heterogeneity plays an important role in determining spatial patterns of rabies and the cost-effectiveness of vaccinations. In this paper, we develop a spatially heterogeneous dog rabies model by using the [Formula: see text]-diffusion equation, where [Formula: see text] reflects the way individual dogs make movement decisions in the underlying random walk. We numerically investigate the dynamics of the model in three diffusion cases: homogeneous, city-wild, and Gaussian-type. We find that the initial conditions affect whether traveling waves or epizootic waves can be observed. However, different initial conditions have little impact on steady-state solutions. An "active" interface is observed between city and wild regions, with a "ridge" on the city side and a "valley" on the wild side for the infectious dog population. In addition, the progressing speed of epizootic waves changes in heterogeneous environments. It is impossible to eliminate rabies in the entire spatial domain if vaccination is focused only in the city region or only in the wild region. When a seasonal transmission is incorporated, the dog population size approaches a positive time-periodic spatially heterogeneous state eventually.
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Affiliation(s)
- Xiunan Wang
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB T6G 2G1, Canada.
| | - Hao Wang
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB T6G 2G1, Canada
| | - Michael Y Li
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB T6G 2G1, Canada
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31
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Seroprevalence of Toscana Virus and Sandfly Fever Sicilian Virus in European Bat Colonies Measured Using a Neutralization Test. Viruses 2021; 13:v13010088. [PMID: 33440618 PMCID: PMC7826795 DOI: 10.3390/v13010088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 01/06/2021] [Accepted: 01/07/2021] [Indexed: 01/01/2023] Open
Abstract
Toscana phlebovirus (TOSV) and Sicilian phlebovirus (SFSV) are endemic in the Mediterranean area where they are transmitted to humans by infected sandflies. Vertebrates of several species have been postulated to act as reservoirs of these viruses, but convincing evidence is still awaited. Among them, bats have been suggested, however documented evidence is lacking. Here we tested a total of 329 bats belonging to eight species collected from twelve localities in southern Spain for the presence of neutralizing antibodies specific to TOSV and SFSV. Positive sera were detected in Schreiber’s long-fingered bat (Miniopterus schreibersii), mouse-eared Myotis (Myotis myotis), European free-tailed bat (Tadarida teniotis), and common serotine (Eptesicus serotinus) with the latter showing the highest prevalence rates for SFSV (22.6%) and TOSV (10%). There was no difference between females and males. Results suggest that bats are not likely to play a major role in the natural cycle of these two sandfly-borne phleboviruses. However, large breeding colonies of bats can be used as sentinels for surveillance of the presence of such viruses in a given locality. In addition, capture–recapture studies should be initiated in order to understand better the dynamics of TOSV and SFSV in bat populations.
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32
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da Silva PG, Mesquita JR, de São José Nascimento M, Ferreira VAM. Viral, host and environmental factors that favor anthropozoonotic spillover of coronaviruses: An opinionated review, focusing on SARS-CoV, MERS-CoV and SARS-CoV-2. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 750:141483. [PMID: 32829257 PMCID: PMC7405882 DOI: 10.1016/j.scitotenv.2020.141483] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Revised: 07/31/2020] [Accepted: 08/03/2020] [Indexed: 05/21/2023]
Abstract
Environmental factors play a key role in the zoonotic transmission of emerging pathogenic viruses as mankind is constantly disturbing wildlife's ecosystems usually by cutting down forests to build human settlements or by catching wild animals for food, which deprives the viruses of their natural hosts and gives them opportunity to infect humans. In December 2019, a new coronavirus emerged from bats and was named SARS-CoV-2 by the International Committee for Taxonomy of Viruses, and the disease it causes named COVID-19 by the World Health Organization. Disease outbreaks such as SARS in 2002-2003, MERS in 2012 and the current COVID-19 pandemic are the result of higher mutation rates of coronaviruses and their unique capacity for genetic recombination, resulting in adaptations that make them more suitable to cross the species barriers and infect other species. This ability for host switching and interspecies infection is often attributed to the great diversity of these viruses, which is a result of viral and host factors such as the low fidelity of their RNA-dependent RNA polymerase, the high frequency of their homologous RNA recombination, and the adaptation of the S protein to bind host receptors like the angiotensin converting enzyme 2 (ACE2) in the case of SARS-CoV and SARS-CoV-2, and dipeptidyl peptidase 4 (DDP4) in MERS-CoV. This review presents an overview of the zoonotic transmission of SARS, MERS and COVID-19, focusing on the viral, host and environmental factors that favor the spillover of these viruses into humans, as well as the biological and ecological factors that make bats the perfect animal reservoir of infection for these viruses.
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Affiliation(s)
| | - João Rodrigo Mesquita
- Abel Salazar Institute of Biomedical Sciences (ICBAS), University of Porto, Porto, Portugal; Epidemiology Research Unit (EPIUnit), Institute of Public Health, University of Porto, Porto, Portugal
| | - Maria de São José Nascimento
- Epidemiology Research Unit (EPIUnit), Institute of Public Health, University of Porto, Porto, Portugal; Faculty of Pharmacy, University of Porto (FFUP), Porto, Portugal
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33
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Gentles AD, Guth S, Rozins C, Brook CE. A review of mechanistic models of viral dynamics in bat reservoirs for zoonotic disease. Pathog Glob Health 2020; 114:407-425. [PMID: 33185145 PMCID: PMC7759253 DOI: 10.1080/20477724.2020.1833161] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
The emergence of SARS-CoV-2, a coronavirus with suspected bat origins, highlights a critical need for heightened understanding of the mechanisms by which bats maintain potentially zoonotic viruses at the population level and transmit these pathogens across species. We review mechanistic models, which test hypotheses of the transmission dynamics that underpin viral maintenance in bat systems. A search of the literature identified only twenty-five mechanistic models of bat-virus systems published to date, derived from twenty-three original studies. Most models focused on rabies and related lyssaviruses (eleven), followed by Ebola-like filoviruses (seven), Hendra and Nipah-like henipaviruses (five), and coronaviruses (two). The vast majority of studies has modelled bat virus transmission dynamics at the population level, though a few nested within-host models of viral pathogenesis in population-level frameworks, and one study focused on purely within-host dynamics. Population-level studies described bat virus systems from every continent but Antarctica, though most were concentrated in North America and Africa; indeed, only one simulation model with no associated data was derived from an Asian bat-virus system. In fact, of the twenty-five models identified, only ten population-level models were fitted to data - emphasizing an overall dearth of empirically derived epidemiological inference in bat virus systems. Within the data fitted subset, the vast majority of models were fitted to serological data only, highlighting extensive uncertainty in our understanding of the transmission status of a wild bat. Here, we discuss similarities and differences in the approach and findings of previously published bat virus models and make recommendations for improvement in future work.
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Affiliation(s)
| | - Sarah Guth
- Department of Integrative Biology, University of California, Berkeley, CA, USA
| | - Carly Rozins
- Department of Integrative Biology, University of California, Berkeley, CA, USA
| | - Cara E. Brook
- Department of Integrative Biology, University of California, Berkeley, CA, USA
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34
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Albery GF, Becker DJ. Fast-lived Hosts and Zoonotic Risk. Trends Parasitol 2020; 37:117-129. [PMID: 33214097 DOI: 10.1016/j.pt.2020.10.012] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 10/25/2020] [Accepted: 10/26/2020] [Indexed: 01/02/2023]
Abstract
Because most emerging human pathogens originate in mammals, many studies aim to identify host traits that determine the risk of sourcing zoonotic outbreaks. Studies regularly assert that 'fast-lived' mammal species exhibiting greater fecundity and shorter lifespans tend to host more zoonoses; however, the causes of this association remain poorly understood and they cover a range of immune and nonimmune mechanisms. We discuss these drivers in the context of evolutionary ecology and wildlife-human interactions. Ultimately, differentiating these mechanisms will require linking interspecific variation in life history with immunity, pathogen diversity, transmissibility, and zoonotic risk, and critical data gaps currently limit our ability to do so. We highlight sampling and analytical frameworks to address this gap and to better inform zoonotic reservoir prediction.
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Affiliation(s)
- Gregory F Albery
- Department of Biology, Georgetown University, Washington, DC, USA.
| | - Daniel J Becker
- Department of Biology, University of Oklahoma, Norman, OK, USA.
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35
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Povolyaeva O, Chalenko Y, Kalinin E, Kolbasova O, Pivova E, Kolbasov D, Yurkov S, Ermolaeva S. Listeria monocytogenes Infection of Bat Pipistrellus nathusii Epithelial cells Depends on the Invasion Factors InlA and InlB. Pathogens 2020; 9:pathogens9110867. [PMID: 33105852 PMCID: PMC7690591 DOI: 10.3390/pathogens9110867] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 10/20/2020] [Accepted: 10/21/2020] [Indexed: 12/20/2022] Open
Abstract
L. monocytogenes is a widespread facultative intracellular pathogen. The range of natural hosts that supporting L. monocytogenes persistence in the environment has not been fully established yet. In this study, we were interested in the potential of L. monocytogenes to infect cells of bats, which are being increasingly recognized as a reservoir for microorganisms that are pathogenic to humans and domestic animals. A stable epithelial cell line was developed from the kidneys of Pipistrellus nathusii, a small bat widely distributed across Europe. The wild-type L. monocytogenes strain EGDe infected this cell line with an invasion efficiency of 0.0078 ± 0.0009%. Once it entered bat cells, L. monocytogenes doubled within about 70 min. When L. monocytogenes lacked either of the major invasion factors, InlA and InlB, invasion efficiency decreased by a factor of 10 and 25 respectively (p < 0.000001). The obtained results suggest that bat epithelial cells are susceptible to L. monocytogenes infection and that L. monocytogenes invasion of bat cells depends on the major invasion factors InlA and InlB. These results constitute the first report on in vitro studies of L. monocytogenes infection in bats.
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Affiliation(s)
- Olga Povolyaeva
- Federal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia; (O.P.); (O.K.); (E.P.); (D.K.); (S.Y.)
| | - Yaroslava Chalenko
- Federal Research Center for Virology and Microbiology (FRCVM), Nizhny Novgorod Research Veterinary Institute Branch, Laboratory of Molecular Microbiology, 603022 Nizhny Novgorod, Russia;
- Gamaleya Research Center of Epidemiology and Microbiology, Laboratory of Ecology of Pathogenic Bacteria, 123098 Moscow, Russia;
- Correspondence: ; Tel.: +7-92-5936-7317
| | - Egor Kalinin
- Gamaleya Research Center of Epidemiology and Microbiology, Laboratory of Ecology of Pathogenic Bacteria, 123098 Moscow, Russia;
| | - Olga Kolbasova
- Federal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia; (O.P.); (O.K.); (E.P.); (D.K.); (S.Y.)
| | - Elena Pivova
- Federal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia; (O.P.); (O.K.); (E.P.); (D.K.); (S.Y.)
| | - Denis Kolbasov
- Federal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia; (O.P.); (O.K.); (E.P.); (D.K.); (S.Y.)
| | - Sergey Yurkov
- Federal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia; (O.P.); (O.K.); (E.P.); (D.K.); (S.Y.)
| | - Svetlana Ermolaeva
- Federal Research Center for Virology and Microbiology (FRCVM), Nizhny Novgorod Research Veterinary Institute Branch, Laboratory of Molecular Microbiology, 603022 Nizhny Novgorod, Russia;
- Gamaleya Research Center of Epidemiology and Microbiology, Laboratory of Ecology of Pathogenic Bacteria, 123098 Moscow, Russia;
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36
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Reijniers J, Tersago K, Borremans B, Hartemink N, Voutilainen L, Henttonen H, Leirs H. Why Hantavirus Prevalence Does Not Always Increase With Host Density: Modeling the Role of Host Spatial Behavior and Maternal Antibodies. Front Cell Infect Microbiol 2020; 10:536660. [PMID: 33134187 PMCID: PMC7550670 DOI: 10.3389/fcimb.2020.536660] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 08/24/2020] [Indexed: 12/23/2022] Open
Abstract
For wildlife diseases, one often relies on host density to predict host infection prevalence and the subsequent force of infection to humans in the case of zoonoses. Indeed, if transmission is mainly indirect, i.e., by way of the environment, the force of infection is expected to increase with host density, yet the laborious field data supporting this theoretical claim are often absent. Hantaviruses are among those zoonoses that have been studied extensively over the past decades, as they pose a significant threat to humans. In Europe, the most widespread hantavirus is the Puumala virus (PUUV), which is carried by the bank vole and causes nephropathia epidemica (NE) in humans. Extensive field campaigns have been carried out in Central Finland to shed light on this supposed relationship between bank vole density and PUUV prevalence and to identify other drivers for the infection dynamics. This resulted in the surprising observation that the relationship between bank vole density and PUUV prevalence is not purely monotonic on an annual basis, contrary to what previous models predicted: a higher vole density does not necessary result in a higher infection prevalence, nor in an increased number of humans reported having NE. Here, we advance a novel individual-based spatially-explicit model which takes into account the immunity provided by maternal antibodies and which simulates the spatial behavior of the host, both possible causes for this discrepancy that were not accounted for in previous models. We show that the reduced prevalence in peak years can be attributed to transient immunity, and that the density-dependent spatial vole behavior, i.e., the fact that home ranges are smaller in high density years, plays only a minor role. The applicability of the model is not limited to the study and prediction of PUUV (and NE) occurrence in Europe, as it could be easily adapted to model other rodent-borne diseases, either with indirect or direct transmission.
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Affiliation(s)
- Jonas Reijniers
- Evolutionary Ecology Group, Biology Department, University of Antwerp, Antwerp, Belgium.,Active Perception Lab, Department of Engineering Management, University of Antwerp, Antwerp, Belgium
| | - Katrien Tersago
- Agentschap Zorg en Gezondheid, Government Administration, Brussels, Belgium
| | - Benny Borremans
- Evolutionary Ecology Group, Biology Department, University of Antwerp, Antwerp, Belgium.,Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, United States.,Interuniversity Institute for Biostatistics and Statistical Bioinformatics, Hasselt University, Hasselt, Belgium
| | - Nienke Hartemink
- Theoretical Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands.,Biometris, Wageningen University and Research, Wageningen, Netherlands
| | | | - Heikki Henttonen
- Terrestrial Population Dynamics, Natural Resources Institute Finland, Helsinki, Finland
| | - Herwig Leirs
- Evolutionary Ecology Group, Biology Department, University of Antwerp, Antwerp, Belgium
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37
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Meza DK, Broos A, Becker DJ, Behdenna A, Willett BJ, Viana M, Streicker DG. Predicting the presence and titre of rabies virus-neutralizing antibodies from low-volume serum samples in low-containment facilities. Transbound Emerg Dis 2020; 68:1564-1576. [PMID: 32931658 DOI: 10.1111/tbed.13826] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 08/03/2020] [Accepted: 09/03/2020] [Indexed: 12/11/2022]
Abstract
Serology is a core component of the surveillance and management of viral zoonoses. Virus neutralization tests are a gold standard serological diagnostic, but requirements for large volumes of serum and high biosafety containment can limit widespread use. Here, focusing on Rabies lyssavirus, a globally important zoonosis, we developed a pseudotype micro-neutralization rapid fluorescent focus inhibition test (pmRFFIT) that overcomes these limitations. Specifically, we adapted an existing micro-neutralization test to use a green fluorescent protein-tagged murine leukaemia virus pseudotype in lieu of pathogenic rabies virus, reducing the need for specialized reagents for antigen detection and enabling use in low-containment laboratories. We further used statistical models to generate rapid, quantitative predictions of the probability and titre of rabies virus-neutralizing antibodies from microscopic imaging of neutralization outcomes. Using 47 serum samples from domestic dogs with neutralizing antibody titres estimated using the fluorescent antibody virus neutralization test (FAVN), pmRFFIT showed moderate sensitivity (78.79%) and high specificity (84.62%). Despite small conflicts, titre predictions were correlated across tests repeated on different dates both for dog samples (r = 0.93) and in a second data set of sera from wild common vampire bats (r = 0.72, N = 41), indicating repeatability. Our test uses a starting volume of 3.5 µl of serum, estimates titres from a single dilution of serum rather than requiring multiple dilutions and end point titration, and may be adapted to target neutralizing antibodies against alternative lyssavirus species. The pmRFFIT enables high-throughput detection of rabies virus-neutralizing antibodies in low-biocontainment settings and is suited to studies in wild or captive animals where large serum volumes cannot be obtained.
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Affiliation(s)
- Diana K Meza
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.,Medical Research Council, University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Alice Broos
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.,Medical Research Council, University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Daniel J Becker
- Department of Biology, Indiana University, Bloomington, IN, USA
| | - Abdelkader Behdenna
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK
| | - Brian J Willett
- Medical Research Council, University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Mafalda Viana
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK
| | - Daniel G Streicker
- Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.,Medical Research Council, University of Glasgow Centre for Virus Research, Glasgow, UK
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38
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Olival KJ, Cryan PM, Amman BR, Baric RS, Blehert DS, Brook CE, Calisher CH, Castle KT, Coleman JTH, Daszak P, Epstein JH, Field H, Frick WF, Gilbert AT, Hayman DTS, Ip HS, Karesh WB, Johnson CK, Kading RC, Kingston T, Lorch JM, Mendenhall IH, Peel AJ, Phelps KL, Plowright RK, Reeder DM, Reichard JD, Sleeman JM, Streicker DG, Towner JS, Wang LF. Possibility for reverse zoonotic transmission of SARS-CoV-2 to free-ranging wildlife: A case study of bats. PLoS Pathog 2020; 16:e1008758. [PMID: 32881980 PMCID: PMC7470399 DOI: 10.1371/journal.ppat.1008758] [Citation(s) in RCA: 99] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
The COVID-19 pandemic highlights the substantial public health, economic, and societal consequences of virus spillover from a wildlife reservoir. Widespread human transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) also presents a new set of challenges when considering viral spillover from people to naïve wildlife and other animal populations. The establishment of new wildlife reservoirs for SARS-CoV-2 would further complicate public health control measures and could lead to wildlife health and conservation impacts. Given the likely bat origin of SARS-CoV-2 and related beta-coronaviruses (β-CoVs), free-ranging bats are a key group of concern for spillover from humans back to wildlife. Here, we review the diversity and natural host range of β-CoVs in bats and examine the risk of humans inadvertently infecting free-ranging bats with SARS-CoV-2. Our review of the global distribution and host range of β-CoV evolutionary lineages suggests that 40+ species of temperate-zone North American bats could be immunologically naïve and susceptible to infection by SARS-CoV-2. We highlight an urgent need to proactively connect the wellbeing of human and wildlife health during the current pandemic and to implement new tools to continue wildlife research while avoiding potentially severe health and conservation impacts of SARS-CoV-2 "spilling back" into free-ranging bat populations.
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Affiliation(s)
- Kevin J. Olival
- EcoHealth Alliance, New York, New York, United States of America
| | - Paul M. Cryan
- US Geological Survey, Fort Collins Science Center, Ft. Collins, Colorado, United States of America
| | - Brian R. Amman
- US Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
| | - Ralph S. Baric
- Department of Epidemiology, University of North Carolina, Chapel Hill, North Carolina, United States of America
| | - David S. Blehert
- US Geological Survey, National Wildlife Health Center, Madison, Wisconsin, United States of America
| | - Cara E. Brook
- Department of Integrative Biology, University of California Berkeley, Berkeley, California, United States of America
| | - Charles H. Calisher
- Arthropod-borne and Infectious Diseases Laboratory, Department of Microbiology, Immunology & Pathology, College of Veterinary Medicine & Biomedical Sciences, Colorado State University, Ft. Collins, Colorado, United States of America
| | - Kevin T. Castle
- Wildlife Veterinary Consulting, Livermore, Colorado, United States of America
| | | | - Peter Daszak
- EcoHealth Alliance, New York, New York, United States of America
| | | | - Hume Field
- EcoHealth Alliance, New York, New York, United States of America
- Bat Conservation International, Austin, Texas, United States of America
| | - Winifred F. Frick
- School of Veterinary Science, University of Queensland, Gatton, Queensland, Australia
- Department of Ecology & Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California, United States of America
| | - Amy T. Gilbert
- US Department of Agriculture, National Wildlife Research Center, Ft. Collins, Colorado, United States of America
| | - David T. S. Hayman
- School of Veterinary Science, Massey University, Palmerston North, New Zealand
| | - Hon S. Ip
- US Geological Survey, National Wildlife Health Center, Madison, Wisconsin, United States of America
| | | | - Christine K. Johnson
- One Health Institute, School of Veterinary Medicine, University of California Davis, Davis, California, United States of America
| | - Rebekah C. Kading
- Arthropod-borne and Infectious Diseases Laboratory, Department of Microbiology, Immunology & Pathology, College of Veterinary Medicine & Biomedical Sciences, Colorado State University, Ft. Collins, Colorado, United States of America
| | - Tigga Kingston
- Department of Biological Sciences, Texas Tech University, Lubbock, Texas, United States of America
| | - Jeffrey M. Lorch
- US Geological Survey, National Wildlife Health Center, Madison, Wisconsin, United States of America
| | - Ian H. Mendenhall
- Programme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore
| | - Alison J. Peel
- Environmental Futures Research Institute, Griffith University, Nathan, Australia
| | - Kendra L. Phelps
- EcoHealth Alliance, New York, New York, United States of America
| | - Raina K. Plowright
- Department of Microbiology & Immunology, Montana State University, Bozeman, Montana, United States of America
| | - DeeAnn M. Reeder
- Department of Biology, Bucknell University, Lewisburg, Pennsylvania, United States of America
| | | | - Jonathan M. Sleeman
- US Geological Survey, National Wildlife Health Center, Madison, Wisconsin, United States of America
| | - Daniel G. Streicker
- Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Scotland, United Kingdom
- MRC-University of Glasgow Centre for Virus Research, Glasgow, Scotland, United Kingdom
| | - Jonathan S. Towner
- US Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
| | - Lin-Fa Wang
- Programme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore
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39
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A cointegration analysis of rabies cases and weather components in Davao City, Philippines from 2006 to 2017. PLoS One 2020; 15:e0236278. [PMID: 32841247 PMCID: PMC7446973 DOI: 10.1371/journal.pone.0236278] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 07/01/2020] [Indexed: 11/19/2022] Open
Abstract
Rabies is a lethal viral disease and dogs are the major disease reservoir in the Philippines. Spatio-temporal variations in environmental factors are known to affect disease dynamics. Some rabies-affected countries considered investigating the role of weather components in driving rabies cases and it has helped them to strategize their control efforts. In this study, cointegration analysis was conducted between the monthly reported rabies cases and the weather components, such as temperature and precipitation, to verify the effect of weather components on rabies incidence in Davao City, Philippines. With the Engle-Granger cointegration tests, we found that rabies cases are cointegrated into each of the weather components. It was further validated, using the Granger causality test, that each weather component predicts the rabies cases and not vice versa. Moreover, we performed the Johansen cointegration test to show that the weather components simultaneously affect the number of rabies cases, which allowed us to estimate a vector-error correction model for rabies incidence as a function of temperature and precipitation. Our analyses showed that canine rabies in Davao City was weather-sensitive, which implies that rabies incidence could be projected using established long-run relationship among reported rabies cases, temperature, and precipitation. This study also provides empirical evidence that can guide local health officials in formulating preventive strategies for rabies control and eradication based on weather patterns.
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40
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Gilbert AT, Wu X, Jackson FR, Franka R, McCracken GF, Rupprecht CE. SAFETY, IMMUNOGENICITY, AND EFFICACY OF INTRAMUSCULAR AND ORAL DELIVERY OF ERA-G333 RECOMBINANT RABIES VIRUS VACCINE TO BIG BROWN BATS ( EPTESICUS FUSCUS). J Wildl Dis 2020; 56:620-630. [PMID: 31895645 PMCID: PMC11307205 DOI: 10.7589/2019-04-108] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Attenuated strains of rabies virus (RABV) have been used for oral vaccination of wild carnivores in Europe and North America. However, some RABV vaccines caused clinical rabies in target animals. To improve the safety of attenuated RABV as an oral vaccine for field use, strategies using selection of escape mutants under monoclonal antibody neutralization pressure and reverse genetics-defined mutations have been used. We tested the safety, immunogenicity, and efficacy of one RABV construct, ERA-g333, developed with reverse genetics by intramuscular (IM) or oral (PO) routes in big brown bats (Eptesicus fuscus). Twenty-five bats received 5×106 mouse intracerebral median lethal doses (MICLD50) of ERA-g333 by IM route, 10 received 5×106 MICLD50 of ERA-g333 by PO route, and 22 bats served as unvaccinated controls. Twenty-one days after vaccination, 44 bats were infected by IM route with 102.9 MICLD50 of E. fuscus RABV. We report both the immunogenicity and efficacy of ERA-g333 delivered by the IM route; no induction of humoral immunity was detected in bats vaccinated by the PO route. Two subsets of bats vaccinated IM (n=5) and PO (n=3) were not challenged, and none developed clinical rabies from ERA-g333. Scarce reports exist on the evaluation of oral rabies vaccines in insectivorous bats, although the strategy evaluated here may be feasible for future application to these important RABV reservoirs.
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Affiliation(s)
- Amy T. Gilbert
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, Atlanta, GA USA 30333
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN USA 37996
| | - Xianfu Wu
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, Atlanta, GA USA 30333
| | - Felix R. Jackson
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, Atlanta, GA USA 30333
| | - Richard Franka
- Center for Global Health, Global Immunization Division, Atlanta, GA USA 30333
| | - Gary F. McCracken
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN USA 37996
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41
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Mihaljevic JR, Polivka CM, Mehmel CJ, Li C, Dukic V, Dwyer G. An Empirical Test of the Role of Small-Scale Transmission in Large-Scale Disease Dynamics. Am Nat 2020; 195:616-635. [PMID: 32216670 DOI: 10.1086/707457] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
A key assumption of epidemiological models is that population-scale disease spread is driven by close contact between hosts and pathogens. At larger scales, however, mechanisms such as spatial structure in host and pathogen populations and environmental heterogeneity could alter disease spread. The assumption that small-scale transmission mechanisms are sufficient to explain large-scale infection rates, however, is rarely tested. Here, we provide a rigorous test using an insect-baculovirus system. We fit a mathematical model to data from forest-wide epizootics while constraining the model parameters with data from branch-scale experiments, a difference in spatial scale of four orders of magnitude. This experimentally constrained model fits the epizootic data well, supporting the role of small-scale transmission, but variability is high. We then compare this model's performance to an unconstrained model that ignores the experimental data, which serves as a proxy for models with additional mechanisms. The unconstrained model has a superior fit, revealing a higher transmission rate across forests compared with branch-scale estimates. Our study suggests that small-scale transmission is insufficient to explain baculovirus epizootics. Further research is needed to identify the mechanisms that contribute to disease spread across large spatial scales, and synthesizing models and multiscale data are key to understanding these dynamics.
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42
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Cárdenas-Canales EM, Gigante CM, Greenberg L, Velasco-Villa A, Ellison JA, Satheshkumar PS, Medina-Magües LG, Griesser R, Falendysz E, Amezcua I, Osorio JE, Rocke TE. Clinical Presentation and Serologic Response during a Rabies Epizootic in Captive Common Vampire Bats (Desmodus rotundus). Trop Med Infect Dis 2020; 5:E34. [PMID: 32121499 PMCID: PMC7157733 DOI: 10.3390/tropicalmed5010034] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 11/16/2022] Open
Abstract
We report mortality events in a group of 123 common vampire bats (Desmodus rotundus) captured in México and housed for a rabies vaccine efficacy study in Madison, Wisconsin. Bat mortalities occurred in México and Wisconsin, but rabies cases reported herein are only those that occurred after arrival in Madison (n = 15). Bats were confirmed positive for rabies virus (RABV) by the direct fluorescent antibody test. In accordance with previous reports, we observed long incubation periods (more than 100 days), variability in clinical signs prior to death, excretion of virus in saliva, and changes in rabies neutralizing antibody (rVNA) titers post-infection. We observed that the furious form of rabies (aggression, hyper-salivation, and hyper-excitability) manifested in three bats, which has not been reported in vampire bat studies since 1936. RABV was detected in saliva of 5/9 bats, 2-5 days prior to death, but was not detected in four of those bats that had been vaccinated shortly after exposure. Bats from different capture sites were involved in two separate outbreaks, and phylogenetic analysis revealed differences in the glycoprotein gene sequences of RABV isolated from each event, indicating that two different lineages were circulating separately during capture at each site.
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Affiliation(s)
- Elsa M. Cárdenas-Canales
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53706, USA; (E.M.C.-C.); (L.G.M.-M.); (J.E.O.)
| | - Crystal M. Gigante
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA; (C.M.G.); (L.G.); (A.V.-V.); (J.A.E.); (P.S.S.)
| | - Lauren Greenberg
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA; (C.M.G.); (L.G.); (A.V.-V.); (J.A.E.); (P.S.S.)
| | - Andres Velasco-Villa
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA; (C.M.G.); (L.G.); (A.V.-V.); (J.A.E.); (P.S.S.)
| | - James A. Ellison
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA; (C.M.G.); (L.G.); (A.V.-V.); (J.A.E.); (P.S.S.)
| | - Panayampalli S. Satheshkumar
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA; (C.M.G.); (L.G.); (A.V.-V.); (J.A.E.); (P.S.S.)
| | - Lex G. Medina-Magües
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53706, USA; (E.M.C.-C.); (L.G.M.-M.); (J.E.O.)
| | | | - Elizabeth Falendysz
- US Geological Survey, National Wildlife Health Center, Madison, Wisconsin, WI 53711, USA;
| | - Ignacio Amezcua
- Comité Estatal para el Fomento y Protección Pecuaria de San Luis Potosí, San Luis Potosí 78310, Mexico;
| | - Jorge E. Osorio
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53706, USA; (E.M.C.-C.); (L.G.M.-M.); (J.E.O.)
| | - Tonie E. Rocke
- US Geological Survey, National Wildlife Health Center, Madison, Wisconsin, WI 53711, USA;
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Orłowska A, Smreczak M, Freuling CM, Müller T, Trębas P, Rola J. Serological Survey of Lyssaviruses in Polish Bats in the Frame of Passive Rabies Surveillance Using an Enzyme-Linked Immunosorbent Assay. Viruses 2020; 12:v12030271. [PMID: 32121200 PMCID: PMC7150987 DOI: 10.3390/v12030271] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 02/17/2020] [Accepted: 02/27/2020] [Indexed: 12/27/2022] Open
Abstract
Background: Bats are known to host a number of nonpathogenic viruses, as well as highly pathogenic viruses causing fatal diseases like rabies. Serological surveys as part of active and passive bat rabies surveillance mainly use seroneutralization assays, demonstrating the presence of lyssavirus-specific antibodies in a variety of European bats, particularly against European bat lyssaviruses type 1 (EBLV-1). Here, we present the first serological survey in European bats of this kind during which European bats from Poland collected in the frame of passive rabies surveillance between 2012 and 2018, as well as Serotine bats (Eptesicus serotinus) and North American Big Brown bats (Eptesicus fuscus) from previous experimental studies, were tested using a commercial ELISA kit for the detection of anti-lyssavirus antibodies. Results: Lyssavirus-specific antibodies were detected in 35 (30.4%) out of 115 Polish bats of both sexes, representing nine out of 13 identified bat species endemic mainly to Central Southern Europe and Western Asia, i.e., Eptesicus serotinus, Nyctalus noctula, Myotis daubentonii, Plecotus auritus, Vespertillo murinus, Pipistrellus pipistrellus, Pipistrellus pipilstrellus/Pipistrellus pygmaeus, Myotis brandtii, and Barbastella barbastellus. Seroprevalence was highest in bat species of Nyctalus noctula, Eptesicus serotinus, Plecotus auritus, and Myotis daubentonii. More than 60% of the ELISA seropositive bats originated from the voivodeships of Silesia, Lower-Silesian, Warmian-Mazurian, and Mazowian. Rabies-specific antibodies were also found in Eptesicus fuscus bats from North America. Conclusions: The study demonstrates the principal application of the BioPro Rabies ELISA Ab Kit for the detection of anti-lyssavirus specific antibodies in body fluids and serum samples of bats. However, results may only be reliable for North American bats, whereas interpretation of results for European bats per se is difficult because proper validation of the test is hampered by the protected status of these species.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
- Correspondence: (A.O.); (M.S.); Tel.: +48-818-893-072 (A.O.); +48818-893-029 (M.S.)
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
- Correspondence: (A.O.); (M.S.); Tel.: +48-818-893-072 (A.O.); +48818-893-029 (M.S.)
| | - Conrad Martin Freuling
- Institute of Molecular Virology and Cell Biology, FLI, WHO Collaborating Centre for Rabies Surveillance and Research, OIE Reference Laboratory for Rabies, 17493 Greifswald-Insel Riems, Germany; (C.M.F.); (T.M.)
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, FLI, WHO Collaborating Centre for Rabies Surveillance and Research, OIE Reference Laboratory for Rabies, 17493 Greifswald-Insel Riems, Germany; (C.M.F.); (T.M.)
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
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Seetahal JFR, Greenberg L, Satheshkumar PS, Sanchez-Vazquez MJ, Legall G, Singh S, Ramkissoon V, Schountz T, Munster V, Oura CAL, Carrington CVF. The Serological Prevalence of Rabies Virus-Neutralizing Antibodies in the Bat Population on the Caribbean Island of Trinidad. Viruses 2020; 12:E178. [PMID: 32033370 PMCID: PMC7077287 DOI: 10.3390/v12020178] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2019] [Revised: 01/14/2020] [Accepted: 01/20/2020] [Indexed: 12/11/2022] Open
Abstract
: Rabies virus (RABV) is the only lyssavirus known to be present within the Caribbean. The island of Trinidad, is richly diverse in chiropteran fauna and endemic for bat-transmitted rabies with low RABV isolation rates observed in this population. We aimed to determine the seroprevalence of rabies virus neutralizing antibodies (RVNA) in light of spatio-temporal and bat demographic factors to infer the extent of natural exposure to RABV in the Trinidadian bat population. RVNA titers were determined by the RABV micro-neutralization test on 383 bat samples representing 21 species, comprising 30.9% of local bat diversity, from 31 locations across the island over 5 years. RVNA was positively detected in 33 samples (8.6%) representing 6 bat species (mainly frugivorous) with titers ranging from 0.1 to 19 IU/mL (mean 1.66 IU/mL). The analyses based on a multivariable binomial generalised linear mixed-effects model showed that bat age and year of capture were significant predictors of seropositivity. Thus, juvenile bats were more likely to be seropositive when compared to adults (estimate 1.13; p = 0.04) which may suggest early exposure to the RABV with possible implications for viral amplification in this population. Temporal variation in rabies seropositivity, 2012-2014 versus 2015-2017 (estimate 1.07; p = 0.03) may have been related to the prevailing rabies epizootic situation. Regarding other factors investigated, RVNA was found in bats from both rural and non-rural areas, as well as in both hematophagous and non-hematophagous bat species. The most common seropositive species, Artibeusjamaicensisplanirostris is ubiquitous throughout the island which may potentially facilitate human exposure. The findings of this study should be factored into public health assessments on the potential for rabies transmission by non-hematophagous bats in Trinidad.
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Affiliation(s)
- Janine F. R. Seetahal
- Department of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago; (V.R.); (C.V.F.C.)
| | - Lauren Greenberg
- Poxvirus and Rabies Branch, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA; (L.G.); (P.S.S.)
| | | | - Manuel J. Sanchez-Vazquez
- Pan American Food-and-Mouth Disease Centre (PANAFTOSA), Pan American Health Organization, Rio de Janeiro CEP 25045-002, Brazil;
| | - George Legall
- Faculty of Food Production and Agriculture, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago;
| | - Shamjeet Singh
- School of Pharmacy, Faculty of Medical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago;
| | - Vernie Ramkissoon
- Department of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago; (V.R.); (C.V.F.C.)
| | - Tony Schountz
- Department of Microbiology, Immunology and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO 80523, USA;
| | - Vincent Munster
- Virus Ecology Unit, Laboratory of Virology, Rocky Mountain Laboratories, NIAID/NIH, Hamilton, MT 59840, USA;
| | - Christopher A. L. Oura
- School of Veterinary Medicine, Faculty of Medical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago;
| | - Christine V. F. Carrington
- Department of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago; (V.R.); (C.V.F.C.)
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45
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Between roost contact is essential for maintenance of European bat lyssavirus type-2 in Myotis daubentonii bat reservoir: 'The Swarming Hypothesis'. Sci Rep 2020; 10:1740. [PMID: 32015375 PMCID: PMC6997190 DOI: 10.1038/s41598-020-58521-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Accepted: 01/08/2020] [Indexed: 12/25/2022] Open
Abstract
Many high-consequence human and animal pathogens persist in wildlife reservoirs. An understanding of the dynamics of these pathogens in their reservoir hosts is crucial to inform the risk of spill-over events, yet our understanding of these dynamics is frequently insufficient. Viral persistence in a wild bat population was investigated by combining empirical data and in-silico analyses to test hypotheses on mechanisms for viral persistence. A fatal zoonotic virus, European Bat lyssavirus type 2 (EBLV-2), in Daubenton’s bats (Myotis daubentonii) was used as a model system. A total of 1839 M. daubentonii were sampled for evidence of virus exposure and excretion during a prospective nine year serial cross-sectional survey. Multivariable statistical models demonstrated age-related differences in seroprevalence, with significant variation in seropositivity over time and among roosts. An Approximate Bayesian Computation approach was used to model the infection dynamics incorporating the known host ecology. The results demonstrate that EBLV-2 is endemic in the study population, and suggest that mixing between roosts during seasonal swarming events is necessary to maintain EBLV-2 in the population. These findings contribute to understanding how bat viruses can persist despite low prevalence of infection, and why infection is constrained to certain bat species in multispecies roosts and ecosystems.
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46
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Abstract
Bats are susceptible to rabies. Although bats may appear to be asymptomatic carriers of rabies for a few days, eventually they fall ill to the viral infection and die. Two of at least four bat-specific variants of rabies virus in Canada have killed humans. Rabies is usually transmitted by biting, but bats are small mammals so their bites may go unnoticed. People exposed to rabid animals should receive postexposure prophylaxis (PEP). With 60 known human deaths from 1950 to 2009, rabies is rare in Canada and the United States of America compared with India where it kills over 100 people annually. In Asia and Africa, most human rabies is acquired from dog bites. In Brazil, dog and bat bites together account for >80% of human rabies. In Canada, rabies is a disease primarily confined to wildlife (foxes, racoons, skunks, and bats). The public image of bats is negatively affected by their association with diseases. Too often bats are victimized by allegations of their role in deadly diseases such as rabies, Ebola, severe acute respiratory syndrome (SARS), and Middle East respiratory syndrome (MERS). In general, bats are not dangerous, but humans should seek treatment if they are bitten by one. (Graphical abstract shows a 4-g elegant myotis biting MBF’s finger—photo by Sherri and Brock Fenton.)
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Affiliation(s)
- M. Brock Fenton
- Department of Biology, University of Western Ontario, London, ON N6A 5B7, Canada
| | - Alan C. Jackson
- Department of Internal Medicine (Neurology), University of Manitoba, Winnipeg, MB R3A 1R9, Canada
| | - Paul A. Faure
- Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON L8S 4K1, Canada
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47
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Davis AJ, Kirby JD, Chipman RB, Nelson KM, Xifara T, Webb CT, Wallace R, Gilbert AT, Pepin KM. Not all surveillance data are created equal—A multi‐method dynamic occupancy approach to determine rabies elimination from wildlife. J Appl Ecol 2019. [DOI: 10.1111/1365-2664.13477] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Amy J. Davis
- United States Department of Agriculture, Animal and Plant Health Inspection Service Wildlife Services National Wildlife Research Center Fort Collins CO USA
| | - Jordona D. Kirby
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services, National Rabies Management Program Concord NH USA
| | - Richard B. Chipman
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services, National Rabies Management Program Concord NH USA
| | - Kathleen M. Nelson
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services, National Rabies Management Program Concord NH USA
| | - Tatiana Xifara
- United States Department of Agriculture, Animal and Plant Health Inspection Service Wildlife Services National Wildlife Research Center Fort Collins CO USA
- Department of Biology Colorado State University Fort Collins CO USA
| | - Colleen T. Webb
- Department of Biology Colorado State University Fort Collins CO USA
| | - Ryan Wallace
- Centers for Disease Control and Prevention Atlanta GA USA
| | - Amy T. Gilbert
- United States Department of Agriculture, Animal and Plant Health Inspection Service Wildlife Services National Wildlife Research Center Fort Collins CO USA
| | - Kim M. Pepin
- United States Department of Agriculture, Animal and Plant Health Inspection Service Wildlife Services National Wildlife Research Center Fort Collins CO USA
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48
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Glennon EE, Becker DJ, Peel AJ, Garnier R, Suu-Ire RD, Gibson L, Hayman DTS, Wood JLN, Cunningham AA, Plowright RK, Restif O. What is stirring in the reservoir? Modelling mechanisms of henipavirus circulation in fruit bat hosts. Philos Trans R Soc Lond B Biol Sci 2019; 374:20190021. [PMID: 31401962 PMCID: PMC6711305 DOI: 10.1098/rstb.2019.0021] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Pathogen circulation among reservoir hosts is a precondition for zoonotic spillover. Unlike the acute, high morbidity infections typical in spillover hosts, infected reservoir hosts often exhibit low morbidity and mortality. Although it has been proposed that reservoir host infections may be persistent with recurrent episodes of shedding, direct evidence is often lacking. We construct a generalized SEIR (susceptible, exposed, infectious, recovered) framework encompassing 46 sub-models representing the full range of possible transitions among those four states of infection and immunity. We then use likelihood-based methods to fit these models to nine years of longitudinal data on henipavirus serology from a captive colony of Eidolon helvum bats in Ghana. We find that reinfection is necessary to explain observed dynamics; that acute infectious periods may be very short (hours to days); that immunity, if present, lasts about 1-2 years; and that recurring latent infection is likely. Although quantitative inference is sensitive to assumptions about serology, qualitative predictions are robust. Our novel approach helps clarify mechanisms of viral persistence and circulation in wild bats, including estimated ranges for key parameters such as the basic reproduction number and the duration of the infectious period. Our results inform how future field-based and experimental work could differentiate the processes of viral recurrence and reinfection in reservoir hosts. This article is part of the theme issue 'Dynamic and integrative approaches to understanding pathogen spillover'.
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Affiliation(s)
- Emma E Glennon
- Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK
| | - Daniel J Becker
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT 59717, USA.,Department of Biology, Indiana University, Bloomington, IN 47405, USA
| | - Alison J Peel
- Environmental Futures Research Institute, Griffith University, Nathan, Queensland, QLD 4111, Australia
| | - Romain Garnier
- Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.,Department of Biology, Georgetown University, Washington, DC 20007, USA
| | - Richard D Suu-Ire
- School of Veterinary Medicine, College of Basic and Applied Sciences, University of Ghana, Legon, Accra, Ghana
| | - Louise Gibson
- Institute of Zoology, Zoological Society of London, London NW1 4RY, UK
| | - David T S Hayman
- Molecular Epidemiology and Public Health Laboratory, Infectious Disease Research Centre, Hopkirk Research Institute, Massey University, Palmerston North, 4442, New Zealand
| | - James L N Wood
- Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK
| | | | - Raina K Plowright
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT 59717, USA
| | - Olivier Restif
- Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK
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49
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Periasamy P, Hutchinson PE, Chen J, Bonne I, Shahul Hameed SS, Selvam P, Hey YY, Fink K, Irving AT, Dutertre CA, Baker M, Crameri G, Wang LF, Alonso S. Studies on B Cells in the Fruit-Eating Black Flying Fox ( Pteropus alecto). Front Immunol 2019; 10:489. [PMID: 30930908 PMCID: PMC6428034 DOI: 10.3389/fimmu.2019.00489] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Accepted: 02/22/2019] [Indexed: 01/08/2023] Open
Abstract
The ability of bats to act as reservoir for viruses that are highly pathogenic to humans suggests unique properties and functional characteristics of their immune system. However, the lack of bat specific reagents, in particular antibodies, has limited our knowledge of bat's immunity. Here, we report a panel of cross-reactive antibodies against MHC-II, NK1.1, CD3, CD21, CD27, and immunoglobulin (Ig), that allows flow cytometry analysis of B, T and NK cell populations in two different fruit-eating bat species namely, Pteropus alecto and E. spelaea. Results confirmed predominance of T cells in the spleen and blood of bats, as previously reported by us. However, the percentages of B cells in bone marrow and NK cells in spleen varied greatly between wild caught P. alecto bats and E. spelaea colony bats, which may reflect inherent differences of their immune system or different immune status. Other features of bat B cells were investigated. A significant increase in sIg+ B cell population was observed in the spleen and blood from LPS-injected bats but not from poly I:C-injected bats, supporting T-independent polyclonal B cell activation by LPS. Furthermore, using an in vitro calcium release assay, P. alecto B cells exhibited significant calcium release upon cross-linking of their B cell receptor. Together, this work contributes to improve our knowledge of bat adaptive immunity in particular B cells.
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Affiliation(s)
- Pravin Periasamy
- Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
- Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Paul E. Hutchinson
- Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Jinmiao Chen
- Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore
| | - Isabelle Bonne
- Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Shahana Shereene Shahul Hameed
- Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
- Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Pavithra Selvam
- Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
- Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Singapore
| | - Ying Ying Hey
- Programme in Emerging Infectious Disease, Duke-NUS Medical School, Singapore, Singapore
| | - Katja Fink
- Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore
| | - Aaron T. Irving
- Programme in Emerging Infectious Disease, Duke-NUS Medical School, Singapore, Singapore
| | - Charles-Antoine Dutertre
- Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (ASTAR), Singapore, Singapore
| | - Michelle Baker
- CSIRO, Livestock Industries, Australian Animal Health Laboratory, Geelong, VIC, Australia
| | - Gary Crameri
- Crameri Research Consulting, Geelong, VIC, Australia
| | - Lin-Fa Wang
- Programme in Emerging Infectious Disease, Duke-NUS Medical School, Singapore, Singapore
| | - Sylvie Alonso
- Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
- Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Singapore
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50
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Mechanisms for lyssavirus persistence in non-synanthropic bats in Europe: insights from a modeling study. Sci Rep 2019; 9:537. [PMID: 30679459 PMCID: PMC6345892 DOI: 10.1038/s41598-018-36485-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Accepted: 11/16/2018] [Indexed: 12/25/2022] Open
Abstract
Bats are natural reservoirs of the largest proportion of viral zoonoses among mammals, thus understanding the conditions for pathogen persistence in bats is essential to reduce human risk. Focusing on the European Bat Lyssavirus subtype 1 (EBLV-1), causing rabies disease, we develop a data-driven spatially explicit metapopulation model to investigate EBLV-1 persistence in Myotis myotis and Miniopterus schreibersii bat species in Catalonia. We find that persistence relies on host spatial structure through the migratory nature of M. schreibersii, on cross-species mixing with M. myotis, and on survival of infected animals followed by temporary immunity. The virus would not persist in the single colony of M. myotis. Our study provides for the first time epidemiological estimates for EBLV-1 progression in M. schreibersii. Our approach can be readily adapted to other zoonoses of public health concern where long-range migration and habitat sharing may play an important role.
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