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Keiser AD. Putting soil microbes on first: identifying the engines of home-field advantage in litter decomposition. THE NEW PHYTOLOGIST 2024; 243:2048-2049. [PMID: 39169614 DOI: 10.1111/nph.19926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 06/12/2024] [Indexed: 08/23/2024]
Abstract
This article is a Commentary on Shigyo et al. (2024); 243: 2146–2156.
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Affiliation(s)
- Ashley D Keiser
- Stockbridge School of Agriculture, University of Massachusetts Amherst, Amherst, MA, USA
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2
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Zhang H, Zhou Y, Hao Y, Yang Y, Lü Y, Lü XT, Yang Y, Pan Q, Han X, Wen L, Liu W. Interannual fluctuations in precipitation shape the trajectory of ecosystem respiration along a grazing exclusion chronosequence in a typical steppe in Inner Mongolia. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 366:121775. [PMID: 38991343 DOI: 10.1016/j.jenvman.2024.121775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 06/20/2024] [Accepted: 07/05/2024] [Indexed: 07/13/2024]
Abstract
Grazing exclusion (GE), as an effective strategy for revitalizing degraded grasslands, possesses the potential to increase ecosystem respiration (Re) and significantly influence the capacity of grassland soils to sequester carbon. However, our current grasp of Re dynamics in response to varying durations of GE, particularly in the context of precipitation fluctuations, remains incomplete. To fill this knowledge gap, we conducted a monitoring of Re over a 40-year GE chronosequence within Inner Mongolia temperate typical steppe across two distinct hydrologically years. Overall, Re exhibited a gradual saturation curve and an increasing trend with the duration of GE in the wet year of 2021 and the normal precipitation year of 2022, respectively. The variance primarily stemmed from relatively higher microbial biomass carbon observed in the short-term GE during 2022 in contrast to 2021. Moreover, the impacts of GE on the sensitivities of Re to moisture and temperature were intricately tied to precipitation patterns. increasing significantly with prolonged GE duration in 2022 but not in 2021. Our study highlights the intricate interplay between GE duration, precipitation variability, and Re dynamics. This deeper understanding enhances our ability to predict and manage carbon cycling within typical steppe in Inner Mongolia, offering invaluable insights for effective restoration strategies and climate change mitigation.
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Affiliation(s)
- Hao Zhang
- Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolia Plateau, Collaborative Innovation Center for Grassland Ecological Security, College of Ecology and Environment, Inner Mongolia University, Hohhot, China; State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Yong Zhou
- Department of Wildland Resources, Utah State University, Logan, UT, USA; Ecology Center, Utah State University, Logan, UT, USA
| | - Yiqing Hao
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, China
| | - Yang Yang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, China
| | - Yaxiang Lü
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, China
| | - Xiao-Tao Lü
- Erguna Forest-Steppe Ecotone Research Station, CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Yong Yang
- Inner Mongolia Key Laboratory of Remote Sensing of Grassland and Emergency Response Technic, Hohhot, China
| | - Qingmin Pan
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, China
| | - Xingguo Han
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, China
| | - Lu Wen
- Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolia Plateau, Collaborative Innovation Center for Grassland Ecological Security, College of Ecology and Environment, Inner Mongolia University, Hohhot, China.
| | - Wei Liu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; Department of Wildland Resources, Utah State University, Logan, UT, USA.
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3
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Zhang Y, Gao H, Cai Z, Zhang J, Müller C. Global patterns of soil available N production by mineralization-immobilization turnover in the tropical forest ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168194. [PMID: 37918753 DOI: 10.1016/j.scitotenv.2023.168194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 10/09/2023] [Accepted: 10/27/2023] [Indexed: 11/04/2023]
Abstract
Available N (Navail) is important to nurish plant-microbial system and sequestrate carbon (C) in terrestrial ecosystems. For forest ecosystem, Navail is usually calculated as the sum of N2 fixation (NN2-fixed), N deposition (Ndeposition) and soil available N production (Navail-soil), in which Navail-soil determined the Navail production and its temporal changes. While, there is still a lack of Navail-soil estimation at the global and regional level due to the temporal and spatial variability of influencing factors, such as climate and soil physicochemical properties. By assembling a dataset of gross rates of soil N mineralization (GRmin), immobilization of ammonium (NH4+) (GRac) and nitrate (NO3-) (GRnc), as well as their corresponding geographic information, climate and main soil physicochemical properties, the Navail-soil produced from organic N (Norg) mineralization and inorganic N (Ninorg) immobilization turnover (MIT) was calculated via building a random forest (RF) model in global tropical forests. The results revealed a good fit between the observed and predicted GRmin (R2 = 0.76), GRac (R2 = 0.77) and GRnc (R2 = 0.67). We further estimated that the total mineralized N, immobilized NH4+ and NO3- was 23.97 (10.48-37.46), 17.98 (5.81-30.15) and 4.86 (1.46-8.26) Pg N year-1, respectively, leading to the total Navail-soil of 1.13 (-0.95-3.21) Pg N year-1. Referring to the reported average density of NN2-fixed and Ndeposition, the total NN2-fixed and Ndeposition was 0.03-0.05 and 0.01 Pg N year-1, respectively, by producting density and square meter of global tropic forest. Then the total Navail of global tropic forest ecosystem was 1.18 (-0.91-3.27) Pg N year-1 (Navail-soil + NN2-fixed + Ndeposition). According to the tight stoichiometric relationship between C and N in the production of gross primary productivity (GPP) and soil respiration (Rs), C:N ratio of 31.8-41.9 and 22.7-48.2 was calculated, respectively, which all fall into the C:N ratio range of plants and litter (13.9-75.9) in tropical forest ecosystem. These results confirmed the prediction of Navail-soil production from MIT was in line with theoretic estimates by applying RF machine learning. To our knowledge, this is the first estimation of Navail-soil and the results provide the theoretical basis to evaluate soil C sequestration potential in tropical (e.g. southern America, southeast Asia and Africa) forest ecosystem.
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Affiliation(s)
- Yi Zhang
- School of Geography, Nanjing Normal University, Nanjing 210023, China
| | - Hong Gao
- Faculty of Geomatics, Lanzhou Jiaotong University, Lanzhou 730070, China
| | - Zucong Cai
- School of Geography, Nanjing Normal University, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China
| | - Jinbo Zhang
- School of Geography, Nanjing Normal University, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China; Liebig Centre for Agroecology and Climate Impact Research, Justus Liebig University, Germany.
| | - Christoph Müller
- Liebig Centre for Agroecology and Climate Impact Research, Justus Liebig University, Germany; Institute of Plant Ecology, Justus-Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany; School of Biology and Environmental Science and Earth Institute, University College Dublin, Belfield, Dublin, Ireland
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Lí JT, Hicks LC, Brangarí AC, Tájmel D, Cruz-Paredes C, Rousk J. Subarctic winter warming promotes soil microbial resilience to freeze-thaw cycles and enhances the microbial carbon use efficiency. GLOBAL CHANGE BIOLOGY 2024; 30:e17040. [PMID: 38273522 DOI: 10.1111/gcb.17040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 11/01/2023] [Accepted: 11/01/2023] [Indexed: 01/27/2024]
Abstract
Climate change is predicted to cause milder winters and thus exacerbate soil freeze-thaw perturbations in the subarctic, recasting the environmental challenges that soil microorganisms need to endure. Historical exposure to environmental stressors can facilitate the microbial resilience to new cycles of that same stress. However, whether and how such microbial memory or stress legacy can modulate microbial responses to cycles of frost remains untested. Here, we conducted an in situ field experiment in a subarctic birch forest, where winter warming resulted in a substantial increase in the number and intensity of freeze-thaw events. After one season of winter warming, which raised mean surface and soil (-8 cm) temperatures by 2.9 and 1.4°C, respectively, we investigated whether the in situ warming-induced increase in frost cycles improved soil microbial resilience to an experimental freeze-thaw perturbation. We found that the resilience of microbial growth was enhanced in the winter warmed soil, which was associated with community differences across treatments. We also found that winter warming enhanced the resilience of bacteria more than fungi. In contrast, the respiration response to freeze-thaw was not affected by a legacy of winter warming. This translated into an enhanced microbial carbon-use efficiency in the winter warming treatments, which could promote the stabilization of soil carbon during such perturbations. Together, these findings highlight the importance of climate history in shaping current and future dynamics of soil microbial functioning to perturbations associated with climate change, with important implications for understanding the potential consequences on microbial-mediated biogeochemical cycles.
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Affiliation(s)
- Jin-Tao Lí
- Department of Biology, Microbial Biogeochemistry in Lund (MBLU), Lund University, Lund, Sweden
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Lettice C Hicks
- Department of Biology, Microbial Biogeochemistry in Lund (MBLU), Lund University, Lund, Sweden
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Albert C Brangarí
- Department of Biology, Microbial Biogeochemistry in Lund (MBLU), Lund University, Lund, Sweden
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Dániel Tájmel
- Department of Biology, Microbial Biogeochemistry in Lund (MBLU), Lund University, Lund, Sweden
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Carla Cruz-Paredes
- Department of Biology, Microbial Biogeochemistry in Lund (MBLU), Lund University, Lund, Sweden
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Johannes Rousk
- Department of Biology, Microbial Biogeochemistry in Lund (MBLU), Lund University, Lund, Sweden
- Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
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5
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Martiny JBH, Martiny AC, Brodie E, Chase AB, Rodríguez-Verdugo A, Treseder KK, Allison SD. Investigating the eco-evolutionary response of microbiomes to environmental change. Ecol Lett 2023; 26 Suppl 1:S81-S90. [PMID: 36965002 DOI: 10.1111/ele.14209] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 02/13/2023] [Accepted: 03/06/2023] [Indexed: 03/27/2023]
Abstract
Microorganisms are the primary engines of biogeochemical processes and foundational to the provisioning of ecosystem services to human society. Free-living microbial communities (microbiomes) and their functioning are now known to be highly sensitive to environmental change. Given microorganisms' capacity for rapid evolution, evolutionary processes could play a role in this response. Currently, however, few models of biogeochemical processes explicitly consider how microbial evolution will affect biogeochemical responses to environmental change. Here, we propose a conceptual framework for explicitly integrating evolution into microbiome-functioning relationships. We consider how microbiomes respond simultaneously to environmental change via four interrelated processes that affect overall microbiome functioning (physiological acclimation, demography, dispersal and evolution). Recent evidence in both the laboratory and the field suggests that ecological and evolutionary dynamics occur simultaneously within microbiomes; however, the implications for biogeochemistry under environmental change will depend on the timescales over which these processes contribute to a microbiome's response. Over the long term, evolution may play an increasingly important role for microbially driven biogeochemical responses to environmental change, particularly to conditions without recent historical precedent.
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Affiliation(s)
- Jennifer B H Martiny
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA
| | - Adam C Martiny
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA
- Department of Earth System Science, University of California, Irvine, California, USA
| | - Eoin Brodie
- Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, USA
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, California, USA
| | - Alexander B Chase
- Department of Earth Sciences, Southern Methodist University, Dallas, Texas, USA
| | | | - Kathleen K Treseder
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA
| | - Steven D Allison
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA
- Department of Earth System Science, University of California, Irvine, California, USA
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6
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Li S, Zhou J, Liu Q, Liang L, Sun T, Xu X, Li M, Wang X, Yuan X. Warming influences CO 2 emissions from China's coastal saltmarsh wetlands more than changes in precipitation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 881:163551. [PMID: 37072101 DOI: 10.1016/j.scitotenv.2023.163551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 04/10/2023] [Accepted: 04/13/2023] [Indexed: 06/01/2023]
Abstract
Coastal wetlands are an important carbon sink but are sensitive to climate changes. The response of CO2 emissions to these changes differs under different hydroclimatic conditions. Here, this article used meta-analysis to synthesize data from Chinese coastal salt marshes, to analyze sensitivities for CO2 emissions, and then to assess the relative contributions of air temperature (Ta) and precipitation (Pre). This article used the ratio between potential evaporation (Ep) and Pre to divide Chinese coastal saltmarshes into water- (Ep/Pre > 1) and energy-limited regions (Ep/Pre ≤ 1). Results show that emissions are more sensitive to both Pre and Ta in water-limited regions (E¯ = 0.60 eV, slope = 0.37) than in energy-limited regions (E¯ = 0.23 eV, slope = 0.04). Comparing the relative effects of changes in Ta (△CO2 = 21.86 mg m-2 h-1) and Pre (△CO2 = 7.19 mg m-2 h-1) on CO2 emissions shows that warming contributes more to changes in CO2 emissions. The response of emissions to changes in Pre is asymmetric and shows that warmer and drier may have antagonistic effects, while warmer and wetter may have synergistic effects. There was a 2.15 mg m-2 h-1 change in emissions in energy-limited regions when Pre increased by 139.69 mm, and a decrease of -0.15 mg m-2 h-1 in emissions when Pre decreased by 1.28 mm in water-limited regions. Climate change has the greatest impact on Phragmites australis in CO2 emissions, especially under warmer and wetter conditions in energy-limited regions. This indicates that warming drives CO2 emissions, while changes in Pre (resulting in wetter or dryer conditions) can mitigate or strengthen CO2 emissions from coastal wetlands in China. This article offers a new perspective and suggests that differences in hydroclimatic conditions should be considered when discussing carbon emissions from coastal wetlands.
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Affiliation(s)
- Shuzhen Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China
| | - Jialiang Zhou
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China
| | - Qiang Liu
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China.
| | - Liqiao Liang
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Tao Sun
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China
| | - Xiaofeng Xu
- Biology Department, San Diego State University, San Diego, CA, USA
| | - Miao Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China
| | - Xuan Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China
| | - Xiaomin Yuan
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China; Key Laboratory for Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China
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Zeng J, Li Y, Dai Y, Zhu Q, Wu Y, Lin X. Soil drying legacy does not affect phenanthrene fate in soil but modifies bacterial community response. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023:121909. [PMID: 37245790 DOI: 10.1016/j.envpol.2023.121909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 05/24/2023] [Accepted: 05/25/2023] [Indexed: 05/30/2023]
Abstract
Alteration of the structure of soil microbial communities following the elimination of hydrophobic organic pollutants (e.g., polycyclic aromatic hydrocarbons, PAHs) is generally assessed using DNA-based techniques, and soil is often required to dry prior to pollutant addition, to facilitate a better mix when establishing microcosms. However, the drying practice may have a legacy effect on soil microbial community structure, which would in turn influence the biodegradation process. Here, we used 14C-labeled phenanthrene to examine the potential side effects of precedent short-term drought events. The results indicate that the drying practice had legacy effects on soil microbial community structure, illustrated by irreversible shifts in the communities. The legacy effects had no significant impact on phenanthrene mineralization and non-extractable residue formation. However, they altered the response of bacterial communities to PAH degradation, leading to a decrease in the abundance of potential PAH degradation genes plausibly attributed to moderately abundant taxa. Based on a comparison of the varied effects of different drying intensity levels, an accurate description of microbial responses to phenanthrene degradation strongly relies on the establishment of stable microbial communities before PAH amendment. Concurrent alterations in the communities resulting from environmental perturbation could greatly mask minor alterations from the degradation of recalcitrant hydrophobic PAH. In practice, to minimize the legacy effects, a soil equilibration step with a reduced drying intensity is indispensable.
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Affiliation(s)
- Jun Zeng
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Beijing East Road, 71, Nanjing, 210008, China
| | - Yanjie Li
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Beijing East Road, 71, Nanjing, 210008, China
| | - Yeliang Dai
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Beijing East Road, 71, Nanjing, 210008, China
| | - Qinghe Zhu
- State Environmental Protection Engineering Center for Urban Soil Contamination Control and Remediation, Shanghai Academy of Environmental Sciences, Shanghai, 200233, China
| | - Yucheng Wu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Beijing East Road, 71, Nanjing, 210008, China
| | - Xiangui Lin
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Beijing East Road, 71, Nanjing, 210008, China.
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Li JT, Zhang Y, Chen H, Sun H, Tian W, Li J, Liu X, Zhou S, Fang C, Li B, Nie M. Low soil moisture suppresses the thermal compensatory response of microbial respiration. GLOBAL CHANGE BIOLOGY 2023; 29:874-889. [PMID: 36177515 DOI: 10.1111/gcb.16448] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 09/14/2022] [Indexed: 06/16/2023]
Abstract
The thermal compensatory response of microbial respiration contributes to a decrease in warming-induced enhancement of soil respiration over time, which could weaken the positive feedback between the carbon cycle and climate warming. Climate warming is also predicted to cause a worldwide decrease in soil moisture, which has an effect on the microbial metabolism of soil carbon. However, whether and how changes in moisture affect the thermal compensatory response of microbial respiration are unexplored. Here, using soils from an 8-year warming experiment in an alpine grassland, we assayed the thermal response of microbial respiration rates at different soil moisture levels. The results showed that relatively low soil moisture suppressed the thermal compensatory response of microbial respiration, leading to an enhanced response to warming. A subsequent moisture incubation experiment involving off-plot soils also showed that the response of microbial respiration to 100 d warming shifted from a slight compensatory response to an enhanced response with decreasing incubation moisture. Further analysis revealed that such respiration regulation by moisture was associated with shifts in enzymatic activities and carbon use efficiency. Our findings suggest that future drought induced by climate warming might weaken the thermal compensatory capacity of microbial respiration, with important consequences for carbon-climate feedback.
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Affiliation(s)
- Jin-Tao Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Yan Zhang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Hongyang Chen
- Research Centre for Northeast Asia Carbon Sink, Centre for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, China
| | - Huiming Sun
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Weitao Tian
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Jinquan Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Xiang Liu
- State Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology, Lanzhou University, Lanzhou, China
| | - Shurong Zhou
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, College of Forestry, Hainan University, Haikou, China
| | - Changming Fang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Bo Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
- Centre for Invasion Biology, Institute of Biodiversity, Yunnan University, Kunming, China
| | - Ming Nie
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
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9
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McBride SG, Osburn ED, Lucas JM, Simpson JS, Brown T, Barrett JE, Strickland MS. Volatile and Dissolved Organic Carbon Sources Have Distinct Effects on Microbial Activity, Nitrogen Content, and Bacterial Communities in Soil. MICROBIAL ECOLOGY 2023; 85:659-668. [PMID: 35102425 DOI: 10.1007/s00248-022-01967-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 01/17/2022] [Indexed: 06/14/2023]
Abstract
Variation in microbial use of soil carbon compounds is a major driver of biogeochemical processes and microbial community composition. Available carbon substrates in soil include both low molecular weight-dissolved organic carbon (LMW-DOC) and volatile organic compounds (VOCs). To compare the effects of LMW-DOC and VOCs on soil chemistry and microbial communities under different moisture regimes, we performed a microcosm experiment with five levels of soil water content (ranging from 25 to 70% water-holding capacity) and five levels of carbon amendment: a no carbon control, two dissolved compounds (glucose and oxalate), and two volatile compounds (methanol and α-pinene). Microbial activity was measured throughout as soil respiration; at the end of the experiment, we measured extractable soil organic carbon and total extractable nitrogen and characterized prokaryotic communities using amplicon sequencing. All C amendments increased microbial activity, and all except oxalate decreased total extractable nitrogen. Likewise, individual phyla responded to specific C amendments-e.g., Proteobacteria increased under addition of glucose, and both VOCs. Further, we observed an interaction between moisture and C amendment, where both VOC treatments had higher microbial activity than LMW-DOC treatments and controls at low moisture. Across moisture and C treatments, we identified that Chloroflexi, Nitrospirae, Proteobacteria, and Verrucomicrobia were strong predictors of microbial activity, while Actinobacteria, Bacteroidetes, and Thaumarcheota strongly predicted soil extractable nitrogen. These results indicate that the type of labile C source available to soil prokaryotes can influence both microbial diversity and ecosystem function and that VOCs may drive microbial functions and composition under low moisture conditions.
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Affiliation(s)
- Steven G McBride
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
| | - Ernest D Osburn
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
- Department of Soil and Water Systems, University of Idaho, Moscow, ID, 83844, USA
| | - Jane M Lucas
- Department of Soil and Water Systems, University of Idaho, Moscow, ID, 83844, USA
- Cary Institute of Ecosystem Studies, Millbrook, NY, 12545, USA
| | - Julia S Simpson
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
- Department of Microbiology and Immunology, The Penn State, Hershey, PA, 17033, USA
| | - Taylor Brown
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - J E Barrett
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Michael S Strickland
- Department of Soil and Water Systems, University of Idaho, Moscow, ID, 83844, USA
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Barrón-Sandoval A, Martiny JBH, Pérez-Carbajal T, Bullock SH, Leija A, Hernández G, Escalante AE. Functional significance of microbial diversity in arid soils: biological soil crusts and nitrogen fixation as a model system. FEMS Microbiol Ecol 2023; 99:6998555. [PMID: 36690342 PMCID: PMC9923382 DOI: 10.1093/femsec/fiad009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 01/11/2023] [Accepted: 01/20/2023] [Indexed: 01/25/2023] Open
Abstract
Microbial communities respond to changes in environmental conditions; however, how compositional shifts affect ecosystem processes is still not well-understood and it is often assumed that different microbial communities will function equally under similar environmental conditions. We evaluated this assumption of functional redundancy using biological soil crusts (BSCs) from two arid ecosystems in Mexico with contrasting climate conditions (hot and cold deserts) following an experimental approach both in the field (reciprocal transplants) and in laboratory conditions (common garden), focusing on the community's composition and potential for nitrogen fixation. Potential of nitrogen fixation was assessed through the acetylene reduction assay. Community composition and diversity was determined with T-RFLPs of nifH gene, high throughput sequencing of 16S rRNA gene amplicons and metagenomic libraries. BSCs tended to show higher potential nitrogen fixation rates when experiencing temperatures more similar to their native environment. Moreover, changes in potential nitrogen fixation, taxonomic and functional community composition, and diversity often depended on an interactive effect of origin of the communities and the environment they experienced. We interpret our results as legacy effects that result from ecological specialization of the BSC communities to their native environment. Overall, we present evidence of nonfunctional redundancy of BSCs in terms of nitrogen fixation.
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Affiliation(s)
- Alberto Barrón-Sandoval
- Laboratorio Nacional de Ciencias de la Sostenibilidad (LANCIS), Instituto de Ecología, UNAM. Circuito Exterior s/n, junto al Jardín Botánico, Coyacán, Mexico City, 014510, Mexico,Department of Ecology and Evolutionary Biology, University of California, 321 Steinhaus Hall, Irvine, CA 92627, United States
| | - Jennifer B H Martiny
- Department of Ecology and Evolutionary Biology, University of California, 321 Steinhaus Hall, Irvine, CA 92627, United States
| | - Teresa Pérez-Carbajal
- Laboratorio Nacional de Ciencias de la Sostenibilidad (LANCIS), Instituto de Ecología, UNAM. Circuito Exterior s/n, junto al Jardín Botánico, Coyacán, Mexico City, 014510, Mexico
| | - Stephen H Bullock
- Department of Conservation Biology, Center for Scientific Research and Higher Education of Ensenada (CICESE), Ctra. Ensenada-Tijuana No. 3918, Ensenada, 22860 Baja CA, Mexico
| | - Alfonso Leija
- Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Av, Universidad 1001, 62210 Cuernavaca, Morelos, Mexico
| | - Georgina Hernández
- Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Av, Universidad 1001, 62210 Cuernavaca, Morelos, Mexico
| | - Ana E Escalante
- Corresponding author: Laboratorio Nacional de Ciencias de la Sostenibilidad (LANCIS), Instituto de Ecología, UNAM. Circuito Exterior s/n, junto al Jardín Botánico, Coyacán, Mexico City, 04510. Mexico. Tel: +52(55)5623-7714; E-mail:
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11
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Responses of grassland productivity to mowing intensity and precipitation variability in a temperate steppe. Oecologia 2023; 201:259-268. [PMID: 36507970 DOI: 10.1007/s00442-022-05305-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 12/06/2022] [Indexed: 12/14/2022]
Abstract
Mowing for hay is an important land use in grasslands that is affected by precipitation variability, due to the water-limited nature of these ecosystems. Past land use and precipitation conditions can have legacy effects on ecosystem functions, potentially altering responses to both mowing and precipitation. Nonetheless, it is still unclear how natural variation in precipitation will affect plant responses to changes in mowing intensity. We conducted a seven-year field experiment with three mowing intensity treatments compared to the traditional mowing intensity (5 cm stubble height) as a control: increased mowing (2 cm stubble), decreased mowing (8 cm stubble) and ceased mowing. Decreased mowing increased both plant aboveground net primary productivity [ANPP] and forage yield across the whole community, driven by increases in graminoids, mainly owing to the positive response of plants to precipitation. Both mowing disturbance and precipitation variability had legacy effects on plant ANPP; however, these responses differed among the whole community, graminoid, and forb levels. Current-year community-wide ANPP [ANPPn] was positively associated with current-year precipitation [PPTn] in all mowing treatments, driven by positive precipitation responses of the dominant graminoids. For forbs, however, ANPPn was negatively associated with prior-year growing season precipitation [PPTn-1] across mowing treatments, potentially due to lagged competition with the dominant graminoids. Our results suggest that the response of the dominant graminoids is the primary factor determining the response of ANPP to mowing and precipitation variability in these grassland ecosystems, and highlight that decreasing mowing intensity may maximize both herder's income and grassland sustainability.
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12
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Yang Q, Veen GF(C, Wagenaar R, Manrubia M, ten Hooven FC, van der Putten WH. Temporal dynamics of range expander and congeneric native plant responses during and after extreme drought events. ECOL MONOGR 2022; 92:e1529. [PMID: 36590329 PMCID: PMC9787952 DOI: 10.1002/ecm.1529] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 12/01/2021] [Accepted: 01/14/2022] [Indexed: 01/04/2023]
Abstract
Climate change is causing range shifts of many species to higher latitudes and altitudes and increasing their exposure to extreme weather events. It has been shown that range-shifting plant species may perform differently in new soil than related natives; however, little is known about how extreme weather events affect range-expanding plants compared to related natives. In this study we used outdoor mesocosms to study how range-expanding plant species responded to extreme drought in live soil from a habitat in a new range with and without live soil from a habitat in the original range (Hungary). During summer drought, the shoot biomass of the range-expanding plant community declined. In spite of this, in the mixed community, range expanders produced more shoot biomass than congeneric natives. In mesocosms with a history of range expanders in the previous year, native plants produced less biomass. Plant legacy or soil origin effects did not change the response of natives or range expanders to summer drought. During rewetting, range expanders had less biomass than congeneric natives but higher drought resilience (survival) in soils from the new range where in the previous year native plant species had grown. The biomass patterns of the mixed plant communities were dominated by Centaurea spp.; however, not all plant species within the groups of natives and of range expanders showed the general pattern. Drought reduced the litter decomposition, microbial biomass, and abundances of bacterivorous, fungivorous, and carnivorous nematodes. Their abundances recovered during rewetting. There was less microbial and fungal biomass, and there were fewer fungivorous nematodes in soils from the original range where range expanders had grown in the previous year. We concluded that in mixed plant communities of range expanders and congeneric natives, range expanders performed better, under both ambient and drought conditions, than congeneric natives. However, when considering the responses of individual species, we observed variations among pairs of congenerics, so that under the present mixed-community conditions there was no uniformity in responses to drought of range expanders versus congeneric natives. Range-expanding plant species reduced soil fungal biomass and the numbers of soil fungivorous nematodes, suggesting that the effects of range-expanding plant species can trickle up in the soil food web.
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Affiliation(s)
- Qiang Yang
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
- State Key Laboratory of Grassland Agro‐ecosystems, School of Life SciencesLanzhou UniversityLanzhouChina
| | - G. F. (Ciska) Veen
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Roel Wagenaar
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Marta Manrubia
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Freddy C. ten Hooven
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Wim H. van der Putten
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
- Laboratory of Nematology, Department of Plant SciencesWageningen University (WUR)WageningenThe Netherlands
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13
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Defending Earth's terrestrial microbiome. Nat Microbiol 2022; 7:1717-1725. [PMID: 36192539 DOI: 10.1038/s41564-022-01228-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 08/17/2022] [Indexed: 11/08/2022]
Abstract
Microbial life represents the majority of Earth's biodiversity. Across disparate disciplines from medicine to forestry, scientists continue to discover how the microbiome drives essential, macro-scale processes in plants, animals and entire ecosystems. Yet, there is an emerging realization that Earth's microbial biodiversity is under threat. Here we advocate for the conservation and restoration of soil microbial life, as well as active incorporation of microbial biodiversity into managed food and forest landscapes, with an emphasis on soil fungi. We analyse 80 experiments to show that native soil microbiome restoration can accelerate plant biomass production by 64% on average, across ecosystems. Enormous potential also exists within managed landscapes, as agriculture and forestry are the dominant uses of land on Earth. Along with improving and stabilizing yields, enhancing microbial biodiversity in managed landscapes is a critical and underappreciated opportunity to build reservoirs, rather than deserts, of microbial life across our planet. As markets emerge to engineer the ecosystem microbiome, we can avert the mistakes of aboveground ecosystem management and avoid microbial monocultures of single high-performing microbial strains, which can exacerbate ecosystem vulnerability to pathogens and extreme events. Harnessing the planet's breadth of microbial life has the potential to transform ecosystem management, but it requires that we understand how to monitor and conserve the Earth's microbiome.
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Abstract
Soil microbes play a central role in ecosystem element cycling. Yet a central question in microbial ecology remains unanswered: to what extent does the taxonomic composition of soil microbial communities mediate biogeochemical process rates? In this quantitative review, we explore the mechanisms that lead to variation in the strength of microbial community structure-function relationships over space and time. To evaluate these mechanisms, we conduct a meta-analysis of studies that have monitored the decomposition of sterilized plant litter inoculated with different microbial assemblages. We find that the influence of microbial community composition on litter decay is pervasive and strong, rivalling in magnitude the influence of litter chemistry on decomposition. However, no single environmental or experimental attribute was correlated with variation in the inoculum effect. These results emphasize the need to better understand ecological dynamics within microbial communities, particularly emergent features such as cross-feeding networks, to improve predictions of soil biogeochemical function.
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15
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A Drying-Rewetting Cycle Imposes More Important Shifts on Soil Microbial Communities than Does Reduced Precipitation. mSystems 2022; 7:e0024722. [PMID: 35762785 PMCID: PMC9426475 DOI: 10.1128/msystems.00247-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Global changes will result in altered precipitation patterns, among which the increasing frequency of drought events has the highest deleterious potential for agriculture. Soil microbes have shown some promise to help crops adapt to drought events, but it is uncertain how crop-associated microorganisms will respond to altered precipitation patterns. To investigate this matter, we conducted a field experiment where we seeded two wheat cultivars (one resistant to water stress and the other sensitive) that were subjected to four precipitation exclusion (PE) regimes (0%, 25%, 50%, and 75% exclusion). These cultivars were sampled seven times (every 2 weeks, from May to August) within one growing season to investigate short-term microbiome responses to altered precipitation regimes and seasonality using 16S rRNA gene and internal transcribed spacer (ITS) region amplicon sequencing. One of the most striking features of the data set was the dramatic shift in microbial community diversity, structure, and composition together with a doubling of the relative abundance of the archaeal ammonia oxidizer genus Nitrososphaera following an important drying-rewetting event. Comparatively small but significant effects of PE and wheat cultivar on microbial community diversity, composition, and structure were observed. Taken together, our results demonstrate an uneven response of microbial taxa to decreasing soil water content, which was dwarfed by drying-rewetting events, to which soil bacteria and archaea were more sensitive than fungi. Importantly, our study showed that an increase in drying-rewetting cycles will cause larger shifts in soil microbial communities than a decrease in total precipitation, suggesting that under climate changes, the distribution of precipitation will be more important than small variations in the total quantity of precipitation. IMPORTANCE Climate change will have a profound effect on the precipitation patterns of global terrestrial ecosystems. Seasonal and interannual uneven distributions of precipitation will lead to increasing frequencies and intensities of extreme drought and rainfall events, which will affect crop productivity and nutrient contents in various agroecosystems. However, we still lack knowledge about the responses of soil microbial communities to reduced precipitation and drying-rewetting events in agroecosystems. Our results demonstrated an uneven response of the soil microbiome and a dramatic shift in microbial community diversity and structure to a significant drying-rewetting event with a large increase in the relative abundance of archaeal ammonia oxidizers. These findings highlight the larger importance of rewetting of dry soils on microbial communities, as compared to decreased precipitation, with potential for changes in the soil nitrogen cycling.
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16
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García‐Palacios P, Chen J. Emerging relationships among soil microbes, carbon dynamics and climate change. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14028] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pablo García‐Palacios
- Instituto de Ciencias Agrarias Consejo Superior de Investigaciones Científicas Madrid Spain
| | - Ji Chen
- Department of Agroecology Aarhus University Tjele Denmark
- iCLIMATE Interdisciplinary Centre for Climate Change Aarhus University Roskilde Denmark
- Aarhus University Centre for Circular Bioeconomy Aarhus University Tjele Denmark
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17
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Zhao X, Liu P, Feng Y, Zhang W, Njoroge B, Long F, Zhou Q, Qu C, Gan X, Liu X. Changes in Soil Physico-Chemical and Microbiological Properties During Natural Succession: A Case Study in Lower Subtropical China. FRONTIERS IN PLANT SCIENCE 2022; 13:878908. [PMID: 35720552 PMCID: PMC9204105 DOI: 10.3389/fpls.2022.878908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
Vegetation succession can change the function and quality of the soil. Exploring the changes in soil properties during secondary forest restoration is of great significance to promote forest restoration and improve the ecological service function of subtropical ecosystems in South China. In this study, we chose three typical forests in subtropical China as restoration sequences, broadleaf-conifer mixed forest (EF), broad-leaved forest (MF), and old-growth forest (LF), to study the changes in soil physico-chemical and biological properties and the changes of soil comprehensive quality during the secondary succession of subtropical forest. The results showed that the soil physical structure was optimized with the progress of forest succession. The soil bulk density decreased gradually with the progress of forest restoration, which was significantly affected by soil organic carbon (p < 0.01). In LF, the soil moisture increased significantly (p < 0.05), and its value can reach 47.85 ± 1.93%, which is consistent with the change of soil porosity. With the recovery process, soil nutrients gradually accumulated. Except for total phosphorus (TP), there was obvious surface enrichment of soil nutrients. Soil organic carbon (15.43 ± 2.28 g/kg), total nitrogen (1.08 ± 0.12 g/kg), and total phosphorus (0.43 ± 0.03 g/kg) in LF were significantly higher than those in EF (p < 0.05). The soil available nutrients, that is, soil available phosphorus and available potassium decreased significantly in LF (p < 0.05). In LF, more canopy interception weakened the P limitation caused by atmospheric acid deposition, so that the soil C:P (37.68 ± 4.76) and N:P (2.49 ± 0.24) in LF were significantly lower than those in EF (p < 0.05). Affected by TP and moisture, microbial biomass C and microbial biomass N increased significantly in LF, and the mean values were 830.34 ± 30.34 mg/kg and 46.60 ± 2.27 mg/kg, respectively. Further analysis showed that total soil porosity (TSP) and TP (weighted value of 0.61) contributed the most to the final soil quality index (SQI). With the forest restoration, the SQI gradually increased, especially in LF the value of SQI was up to 0.84, which was significantly higher than that in EF and MF (p < 0.05). This result is of great significance to understanding the process of restoration of subtropical forests and improving the management scheme of subtropical secondary forests.
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Affiliation(s)
- Xinyu Zhao
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Peiling Liu
- South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Yingjie Feng
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Weiqiang Zhang
- Guangdong Provincial Key Laboratory of Silviculture, Protection and Utilization, Guangdong Academy of Forestry, Guangzhou, China
| | - Brian Njoroge
- South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Fengling Long
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Qing Zhou
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Chao Qu
- Guangdong Provincial Key Laboratory of Silviculture, Protection and Utilization, Guangdong Academy of Forestry, Guangzhou, China
| | - Xianhua Gan
- Guangdong Provincial Key Laboratory of Silviculture, Protection and Utilization, Guangdong Academy of Forestry, Guangzhou, China
| | - Xiaodong Liu
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
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18
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Fei S, Kivlin SN, Domke GM, Jo I, LaRue EA, Phillips RP. Coupling of plant and mycorrhizal fungal diversity: its occurrence, relevance, and possible implications under global change. THE NEW PHYTOLOGIST 2022; 234:1960-1966. [PMID: 35014033 DOI: 10.1111/nph.17954] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 12/21/2021] [Indexed: 06/14/2023]
Abstract
First principles predict that diversity at one trophic level often begets diversity at other levels, suggesting plant and mycorrhizal fungal diversity should be coupled. Local-scale studies have shown positive coupling between the two, but the association is less consistent when extended to larger spatial and temporal scales. These inconsistencies are likely due to divergent relationships of different mycorrhizal fungal guilds to plant diversity, scale dependency, and a lack of coordinated sampling efforts. Given that mycorrhizal fungi play a central role in plant productivity and nutrient cycling, as well as ecosystem responses to global change, an improved understanding of the coupling between plant and mycorrhizal fungal diversity across scales will reduce uncertainties in predicting the ecosystem consequences of species gains and losses.
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Affiliation(s)
- Songlin Fei
- Department of Forestry and Natural Resources, Purdue University, 715 W. State St., West Lafayette, IN, 47907, USA
| | - Stephanie N Kivlin
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN, 37996, USA
| | - Grant M Domke
- United States Department of Agriculture Forest Service, Northern Research Station, 1992 Folwell Ave., St. Paul, MN, 55108, USA
| | - Insu Jo
- Manaaki Whenua - Landcare Research, 54 Gerald St., Lincoln, 7608, New Zealand
| | - Elizabeth A LaRue
- Department of Forestry and Natural Resources, Purdue University, 715 W. State St., West Lafayette, IN, 47907, USA
- Department of Biological Sciences, The University of Texas at El Paso, 500 W. University Ave., El Paso, TX, 79968, USA
| | - Richard P Phillips
- Department of Biology, Indiana University, 1001 East Third St., Bloomington, IN, 47405, USA
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19
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Liu X, Zhou T, Shi P, Zhang Y, Luo H, Yu P, Xu Y, Zhou P, Zhang J. Uncertainties of soil organic carbon stock estimation caused by paleoclimate and human footprint on the Qinghai Plateau. CARBON BALANCE AND MANAGEMENT 2022; 17:8. [PMID: 35616782 PMCID: PMC9134640 DOI: 10.1186/s13021-022-00203-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 04/03/2022] [Indexed: 05/31/2023]
Abstract
BACKGROUND Quantifying the stock of soil organic carbon (SOC) and evaluating its potential impact factors is important to evaluating global climate change. Human disturbances and past climate are known to influence the rates of carbon fixation, soil physiochemical properties, soil microbial diversity and plant functional traits, which ultimately affect the current SOC storage. However, whether and how the paleoclimate and human disturbances affect the distribution of SOC storage on the high-altitude Tibetan Plateau remain largely unknown. Here, we took the Qinghai Plateau, the main component of the Tibetan Plateau, as our study region and applied three machine learning models (random forest, gradient boosting machine and support vector machine) to estimate the spatial and vertical distributions of the SOC stock and then evaluated the effects of the paleoclimate during the Last Glacial Maximum and the mid-Holocene periods as well as the human footprint on SOC stock at 0 to 200 cm depth by synthesizing 827 soil observations and 71 environmental factors. RESULTS Our results indicate that the vegetation and modern climate are the determinant factors of SOC stocks, while paleoclimate (i.e., paleotemperature and paleoprecipitation) is more important than modern temperature, modern precipitation and the human footprint in shaping current SOC stock distributions. Specifically, the SOC stock was deeply underestimated in near natural ecosystems and overestimated in the strongly human disturbance ecosystems if the model did not consider the paleoclimate. Overall, the total SOC stock of the Qinghai Plateau was underestimated by 4.69%, 12.25% and 6.67% at depths of 0 to 100 cm, 100 to 200 cm and 0 to 200 cm, respectively. In addition, the human footprint had a weak influence on the distributions of the SOC stock. We finally estimated that the total and mean SOC stock at 200 cm depth by including the paleoclimate effects was 11.36 Pg C and 16.31 kg C m-2, respectively, and nearly 40% SOC was distributed in the top 30 cm. CONCLUSION The paleoclimate is relatively important for the accurate modeling of current SOC stocks. Overall, our study provides a benchmark for predicting SOC stock patterns at depth and emphasizes that terrestrial carbon cycle models should incorporate information on how the paleoclimate has influenced SOC stocks.
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Affiliation(s)
- Xia Liu
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Tao Zhou
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China.
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China.
| | - Peijun Shi
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
- Academy of Plateau Science and Sustainability, People's Government of Qinghai Province and Beijing Normal University, Xining, 810016, China
| | - Yajie Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Hui Luo
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Peixin Yu
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Yixin Xu
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Peifang Zhou
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Jingzhou Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Beijing Normal University, No. 19 XinJieKouWai St., HaiDian District, Beijing, 100875, China
- Key Laboratory of Environmental Change and Natural Disaster of Ministry of Education, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
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20
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Broderick CM, Wilkins K, Smith MD, Blair JM. Climate legacies determine grassland responses to future rainfall regimes. GLOBAL CHANGE BIOLOGY 2022; 28:2639-2656. [PMID: 35015919 DOI: 10.1111/gcb.16084] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 12/15/2021] [Accepted: 01/04/2022] [Indexed: 06/14/2023]
Abstract
Climate variability and periodic droughts have complex effects on carbon (C) fluxes, with uncertain implications for ecosystem C balance under a changing climate. Responses to climate change can be modulated by persistent effects of climate history on plant communities, soil microbial activity, and nutrient cycling (i.e., legacies). To assess how legacies of past precipitation regimes influence tallgrass prairie C cycling under new precipitation regimes, we modified a long-term irrigation experiment that simulated a wetter climate for >25 years. We reversed irrigated and control (ambient precipitation) treatments in some plots and imposed an experimental drought in plots with a history of irrigation or ambient precipitation to assess how climate legacies affect aboveground net primary productivity (ANPP), soil respiration, and selected soil C pools. Legacy effects of elevated precipitation (irrigation) included higher C fluxes and altered labile soil C pools, and in some cases altered sensitivity to new climate treatments. Indeed, decades of irrigation reduced the sensitivity of both ANPP and soil respiration to drought compared with controls. Positive legacy effects of irrigation on ANPP persisted for at least 3 years following treatment reversal, were apparent in both wet and dry years, and were associated with altered plant functional composition. In contrast, legacy effects on soil respiration were comparatively short-lived and did not manifest under natural or experimentally-imposed "wet years," suggesting that legacy effects on CO2 efflux are contingent on current conditions. Although total soil C remained similar across treatments, long-term irrigation increased labile soil C and the sensitivity of microbial biomass C to drought. Importantly, the magnitude of legacy effects for all response variables varied with topography, suggesting that landscape can modulate the strength and direction of climate legacies. Our results demonstrate the role of climate history as an important determinant of terrestrial C cycling responses to future climate changes.
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Affiliation(s)
| | - Kate Wilkins
- Department of Biology, Colorado State University, Fort Collins, Colorado, USA
| | - Melinda D Smith
- Department of Biology, Colorado State University, Fort Collins, Colorado, USA
- Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
| | - John M Blair
- Division of Biology, Kansas State University, Manhattan, Kansas, USA
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21
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Zhang X, Chen S, Yang Y, Wang Q, Wu Y, Zhou Z, Wang H, Wang W. Shelterbelt farmland-afforestation induced SOC accrual with higher temperature stability: Cross-sites 1 m soil profiles analysis in NE China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 814:151942. [PMID: 34843791 DOI: 10.1016/j.scitotenv.2021.151942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Revised: 10/21/2021] [Accepted: 11/20/2021] [Indexed: 06/13/2023]
Abstract
Shelterbelt farmland afforestation has been well-reported in its wind-break and climate regulation function, but less is on underground-soil organic carbon (SOC) sequestration and environmental stability. In this paper, we collected 180 soil samples from soil depths of 1 m (0-20, 20-40, 40-60, 60-80, 80-100 cm) in the farmland and neighbor shelterbelts in Songnen Plain, northeastern China. The sample plots covered six regions in the study area. SOC concentration and respiration decomposition rate, Q10 (temperature sensitivity), Hs (humidity sensitivity) were determined in the laboratory cultivation. Soil properties (N, P, K, electrical conductivity-EC, pH) and geographic-climate factors (multiple-year mean annual temperature and precipitation, MAT&MAP; temperature and precipitation during sampling month, MT &MP) were used to reveal the underlying reason for the changes in soil carbon sequestration. The results showed no significant difference in SOC respirational decomposition rate between farmland and shelterbelt forests but a 15.8% higher SOC concentration in shelterbelt forests (p < 0.05). The poplar shelterbelts reduced the Q10 value by 15.4% (p < 0.05), with deeper soils a more significant reduction in Q10. With soil moisture increases, both shelterbelt forests and farmland showed an obvious respiration pattern of first-increasing-then-decreasing. No significant Hs (linear gradients) differences were found in farmland and shelterbelt forests. Partitioning of the RDA ordination-based variation showed that SOC stability (Hs and Q10) of farmland was more affected by geo-climate. In contrast, the SOC stability of shelterbelt forests was greatly influenced by soil properties. Our findings manifest that the above-mentioned SOC changes can improve shelterbelt forest carbon sequestration function by prolonging the SOC lifespan in soil by at least 7% and SOC concentration by >15%. This should be included in the future to assess the underground soil carbon impact of Three-North shelterbelts in China and provide data supports for the estimation of similar forest stands in other parts of the world.
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Affiliation(s)
- Xiting Zhang
- Key Laboratory of Forest Plant Ecology (Ministry of Education), Heilongjiang Provincial Key Laboratory of ecological utilization of Forestry-based active substances, College of Chemistry, Chemistry Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China
| | - Shengxian Chen
- Key Laboratory of Forest Plant Ecology (Ministry of Education), Heilongjiang Provincial Key Laboratory of ecological utilization of Forestry-based active substances, College of Chemistry, Chemistry Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China
| | - Yanbo Yang
- Key Laboratory of Forest Plant Ecology (Ministry of Education), Heilongjiang Provincial Key Laboratory of ecological utilization of Forestry-based active substances, College of Chemistry, Chemistry Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China
| | - Qiong Wang
- College of Forestry, College of Art and Landscape, Jiangxi Agricultural University, Nanchang 330045, China
| | - Yan Wu
- School of Biological Sciences, Guizhou Education University, Guiyang 550018, China
| | - Zhiqiang Zhou
- Key Laboratory of Forest Plant Ecology (Ministry of Education), Heilongjiang Provincial Key Laboratory of ecological utilization of Forestry-based active substances, College of Chemistry, Chemistry Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China
| | - Huimei Wang
- Key Laboratory of Forest Plant Ecology (Ministry of Education), Heilongjiang Provincial Key Laboratory of ecological utilization of Forestry-based active substances, College of Chemistry, Chemistry Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China.
| | - Wenjie Wang
- Key Laboratory of Forest Plant Ecology (Ministry of Education), Heilongjiang Provincial Key Laboratory of ecological utilization of Forestry-based active substances, College of Chemistry, Chemistry Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China; Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China.
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22
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Evans S, Allison S, Hawkes C. Microbes, memory, and moisture: predicting microbial moisture responses and their impact on carbon cycling. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14034] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sarah Evans
- W.K. Kellogg Biological Station, Ecology and Evolutionary Biology Program Department of Integrative Biology Michigan State University Hickory Corners MI 49083 USA
| | - Steve Allison
- Department of Ecology and Evolutionary Biology Department of Earth System Science University of California Irvine California 92697 USA
| | - Christine Hawkes
- Department of Plant and Microbial Biology North Carolina State University Raleigh NC 27607 USA
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23
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Dacal M, García‐Palacios P, Asensio S, Wang J, Singh BK, Maestre FT. Climate change legacies contrastingly affect the resistance and resilience of soil microbial communities and multifunctionality to extreme drought. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14000] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Marina Dacal
- Instituto Multidisciplinar para el Estudio del Medio ‘Ramon Margalef’ Universidad de Alicante San Vicente del Raspeig Spain
- Departamento de Biología y Geología Física y Química Inorgánica Universidad Rey Juan Carlos Móstoles Spain
| | - Pablo García‐Palacios
- Departamento de Biología y Geología Física y Química Inorgánica Universidad Rey Juan Carlos Móstoles Spain
- Instituto de Ciencias Agrarias Consejo Superior de Investigaciones Científicas Madrid Spain
| | - Sergio Asensio
- Instituto Multidisciplinar para el Estudio del Medio ‘Ramon Margalef’ Universidad de Alicante San Vicente del Raspeig Spain
| | - Juntao Wang
- Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
- Global Centre for Land‐Based Innovation Western Sydney University Penrith South DC NSW Australia
| | - Brajesh K. Singh
- Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
- Global Centre for Land‐Based Innovation Western Sydney University Penrith South DC NSW Australia
| | - Fernando T. Maestre
- Instituto Multidisciplinar para el Estudio del Medio ‘Ramon Margalef’ Universidad de Alicante San Vicente del Raspeig Spain
- Departamento de Ecología Universidad de Alicante San Vicente del Raspeig Spain
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24
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Berdugo M, Vidiella B, Solé RV, Maestre FT. Ecological mechanisms underlying aridity thresholds in global drylands. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13962] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Miguel Berdugo
- ICREA‐Complex Systems Lab UPF‐PRBB Barcelona Spain
- Institut de Biologia Evolutiva CSIC‐UPF Barcelona Spain
- Institute of Integrative Biology Department of Environment Systems Science ETH Zürich Zürich Switzerland
| | - Blai Vidiella
- ICREA‐Complex Systems Lab UPF‐PRBB Barcelona Spain
- Institut de Biologia Evolutiva CSIC‐UPF Barcelona Spain
| | - Ricard V. Solé
- ICREA‐Complex Systems Lab UPF‐PRBB Barcelona Spain
- Institut de Biologia Evolutiva CSIC‐UPF Barcelona Spain
- Santa Fe Institute Santa Fe NM USA
| | - Fernando T. Maestre
- Instituto Multidisciplinar para el Estudio del Medio “Ramon Margalef” Universidad de Alicante Alicante Spain
- Departamento de Ecología Universidad de Alicante Alicante Spain
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25
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Kuang J, Bates CT, Wan X, Ning D, Deng D, Shu W, Zhou J. High historical variability weakens the effects of current climate differentiation on microbial community dissimilarity and assembly. GLOBAL CHANGE BIOLOGY 2021; 27:5963-5975. [PMID: 34403163 DOI: 10.1111/gcb.15848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2021] [Accepted: 08/02/2021] [Indexed: 06/13/2023]
Abstract
Understanding the influences of global climate change on soil microbial communities is essential in evaluating the terrestrial biosphere's feedback to this alarming anthropogenic disturbance. However, little is known about how intra-site historical climate variability can mediate the influences of current climate differences on community dissimilarity and assembly. To fill this gap, we examined and disentangled the interactive effects of historical climate variability and current climate differences on the soil bacterial community dissimilarity and stochasticity of community assembly among 143 sites from 28 forests across eastern China. We hypothesize that the relative importance of stochasticity and community dissimilarity are related to historical climate variability and that an increasing sum of intra-site historical variability enhances stochasticity while reduces dissimilarity between two communities. To test our hypothesis, we statistically controlled for covariates between sites including differences in soil chemistry, plant diversity, spatial distance, and seasonal climate variations at annual timescales. We observed that an increase in inter-site current climate differences led to a reduced impact of stochasticity in community assembly and a pronounced divergence between communities. In stark contrast, when communities were subjected to a high level of intra-site historical climate fluctuation, the observed impact incurred from current climate differences was substantially weakened. Moreover, the influence of increased historical variability was consistent along the gradient of current temperature differences between sites. However, effects induced by historical fluctuation in precipitation were disproportional and only evident when small inter-site differences were observed. Consequently, if the prior climate variability is ignored, especially regarding environmental factors like temperature, we assert that the influence current climate differentiation has on regulating community dissimilarity and assembly stochasticity will be underestimated. Together, our findings highlight the importance and need of explicitly controlling the mean and the historical variability of climate factors for the next "generation" of climate change experiments to come.
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Affiliation(s)
- Jialiang Kuang
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA
- State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources and Conservation of Guangdong Higher Education Institutes, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou, China
| | - Colin T Bates
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA
| | - Xiaoling Wan
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA
- The Key Laboratory of Aquatic Biodiversity and Conservation of the Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Daliang Ning
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA
| | - Dongmei Deng
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA
- Guangxi Key Laboratory of Green Processing of Sugar Resources, College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, China
| | - Wensheng Shu
- School of Life Sciences, South China Normal University, Guangzhou, China
| | - Jizhong Zhou
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA
- Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China
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26
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Wang B, Allison SD. Drought legacies mediated by trait trade‐offs in soil microbiomes. Ecosphere 2021. [DOI: 10.1002/ecs2.3562] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
- Bin Wang
- Department of Ecology and Evolutionary Biology University of California Irvine California92697USA
| | - Steven D. Allison
- Department of Ecology and Evolutionary Biology University of California Irvine California92697USA
- Department of Earth System Science University of California Irvine California92697USA
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27
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Soil organic carbon cycling in response to simulated soil moisture variation under field conditions. Sci Rep 2021; 11:10841. [PMID: 34035390 PMCID: PMC8149407 DOI: 10.1038/s41598-021-90359-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Accepted: 05/04/2021] [Indexed: 02/04/2023] Open
Abstract
The combination of extended dry periods and high intensity rainfall, common in the southeastern US, leads to greater variability in soil moisture and consequently increases uncertainty to microbial processes pertinent to soil carbon (C) mineralization. However, field-based findings on soil moisture sensitivity to soil C cycling are very limited. Therefore, a field experiment was conducted in 2018 and 2019 on a soybean (Glycine max L.) cropland in the southeastern US with three soil moisture treatments: drought (simulated using rainout-shelter from June to October in each year), rainfed (natural precipitation), and irrigated (irrigation and precipitation). Soil respiration was measured weekly from May to November in both years. Soil samples were collected multiple times each year from 0-5, 5-15, and 15-30 cm depths to determine microbial biomass C (MBC), extractable organic C (EOC), hydrolytic enzyme activities, and fungal abundance. The cumulative respiration under drought compared to other treatments was lower by 32% to 33% in 2018 and 38% to 45% in 2019. Increased MBC, EOC, and fungal abundance were observed under drought than other treatments. Specific enzyme activity indicated fewer metabolically active microbes under drought treatment compared to rainfed and irrigated treatments. Also, maintenance of enzyme pool was observed under drought condition. These results provide critical insights on microbial metabolism in response to soil moisture variation and how that influences different pools of soil C under field conditions.
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28
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Dickey JR, Swenie RA, Turner SC, Winfrey CC, Yaffar D, Padukone A, Beals KK, Sheldon KS, Kivlin SN. The Utility of Macroecological Rules for Microbial Biogeography. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.633155] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Macroecological rules have been developed for plants and animals that describe large-scale distributional patterns and attempt to explain the underlying physiological and ecological processes behind them. Similarly, microorganisms exhibit patterns in relative abundance, distribution, diversity, and traits across space and time, yet it remains unclear the extent to which microorganisms follow macroecological rules initially developed for macroorganisms. Additionally, the usefulness of these rules as a null hypothesis when surveying microorganisms has yet to be fully evaluated. With rapid advancements in sequencing technology, we have seen a recent increase in microbial studies that utilize macroecological frameworks. Here, we review and synthesize these macroecological microbial studies with two main objectives: (1) to determine to what extent macroecological rules explain the distribution of host-associated and free-living microorganisms, and (2) to understand which environmental factors and stochastic processes may explain these patterns among microbial clades (archaea, bacteria, fungi, and protists) and habitats (host-associated and free living; terrestrial and aquatic). Overall, 78% of microbial macroecology studies focused on free living, aquatic organisms. In addition, most studies examined macroecological rules at the community level with only 35% of studies surveying organismal patterns across space. At the community level microorganisms often tracked patterns of macroorganisms for island biogeography (74% confirm) but rarely followed Latitudinal Diversity Gradients (LDGs) of macroorganisms (only 32% confirm). However, when microorganisms and macroorganisms shared the same macroecological patterns, underlying environmental drivers (e.g., temperature) were the same. Because we found a lack of studies for many microbial groups and habitats, we conclude our review by outlining several outstanding questions and creating recommendations for future studies in microbial ecology.
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29
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Meisner A, Snoek BL, Nesme J, Dent E, Jacquiod S, Classen AT, Priemé A. Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles. THE ISME JOURNAL 2021; 15:1207-1221. [PMID: 33408369 PMCID: PMC8115648 DOI: 10.1038/s41396-020-00844-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 11/05/2020] [Accepted: 11/11/2020] [Indexed: 01/29/2023]
Abstract
Climate change alters frequencies and intensities of soil drying-rewetting and freezing-thawing cycles. These fluctuations affect soil water availability, a crucial driver of soil microbial activity. While these fluctuations are leaving imprints on soil microbiome structures, the question remains if the legacy of one type of weather fluctuation (e.g., drying-rewetting) affects the community response to the other (e.g., freezing-thawing). As both phenomenons give similar water availability fluctuations, we hypothesized that freezing-thawing and drying-rewetting cycles have similar effects on the soil microbiome. We tested this hypothesis by establishing targeted microcosm experiments. We created a legacy by exposing soil samples to a freezing-thawing or drying-rewetting cycle (phase 1), followed by an additional drying-rewetting or freezing-thawing cycle (phase 2). We measured soil respiration and analyzed soil microbiome structures. Across experiments, larger CO2 pulses and changes in microbiome structures were observed after rewetting than thawing. Drying-rewetting legacy affected the microbiome and CO2 emissions upon the following freezing-thawing cycle. Conversely, freezing-thawing legacy did not affect the microbial response to the drying-rewetting cycle. Our results suggest that drying-rewetting cycles have stronger effects on soil microbial communities and CO2 production than freezing-thawing cycles and that this pattern is mediated by sustained changes in soil microbiome structures.
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Affiliation(s)
- Annelein Meisner
- grid.4514.40000 0001 0930 2361Microbial Ecology, Department of Biology, Lund University, Ecology Building, SE-223 62 Lund, Sweden ,grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark ,grid.418375.c0000 0001 1013 0288Department of Microbial Ecology, Netherlands Institute of Ecology, Droevendaalsesteeg 10, Wageningen, The Netherlands ,grid.4818.50000 0001 0791 5666Present Address: Wageningen University & Research, Droevendaalsesteeg 4, Wageningen, The Netherlands
| | - Basten L. Snoek
- grid.5477.10000000120346234Theoretical Biology and Bioinformatics, Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Joseph Nesme
- grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark
| | - Elizabeth Dent
- grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark
| | - Samuel Jacquiod
- grid.5613.10000 0001 2298 9313Agroécologie, AgroSup Dijon, INRAE Centre Dijon, Université de Bourgogne Franche-Comté, Dijon, France
| | - Aimée T. Classen
- grid.214458.e0000000086837370Ecology and Evolutionary Biology Department, University of Michigan, Ann Arbor, MI 48109 USA ,grid.59062.380000 0004 1936 7689The Gund Institute for Environment, University of Vermont, Burlington, VT USA ,grid.5254.60000 0001 0674 042XThe Center for Macroecology, Evolution and Climate, The University of Copenhagen, Copenhagen Ø, Denmark
| | - Anders Priemé
- grid.5254.60000 0001 0674 042XDepartment of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark ,grid.5254.60000 0001 0674 042XDepartment of Geosciences and Natural Resource Management, Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, 1350 Copenhagen, Denmark
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30
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Shen R, Yu L, Xu P, Liang Z, Lu Q, Liang D, He Z, Wang S. Water content as a primary parameter determines microbial reductive dechlorination activities in soil. CHEMOSPHERE 2021; 267:129152. [PMID: 33316619 DOI: 10.1016/j.chemosphere.2020.129152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 11/25/2020] [Accepted: 11/27/2020] [Indexed: 06/12/2023]
Abstract
Organohalide-respiring bacteria (OHRB) remove halogens from a variety of organohalides, which have been utilized for in situ remediation of different contaminated sites, e.g., groundwater, sediment and soil. Nonetheless, dehalogenation activities of OHRB and consequent remediation efficiencies can be synergistically affected by water content, soil type and inoculated/indigenous OHRB, which need to be disentangled to identify the key driving parameter and to elucidate the underlying mechanism. In this study, we investigated the impacts of water content (0-100%), soil type (laterite, brown soil and black soil) and inoculated OHRB (Dehalococcoides mccartyi CG1 and a river sediment culture) on reductive dechlorination of perchloroethene (PCE) and polychlorinated biphenyls (PCBs), as well as on associated microbial communities. Results suggested that the water content as a primary rate-limiting parameter governed dechlorination activities in environmental matrices, particularly in the soil, possibly through mediation of cell-to-organohalide mobility of OHRB. By contrast, interestingly, organohalide-dechlorinating microbial communities were predominantly clustered based on soil types, rather than water contents or inoculated OHRB. This study provided knowledge on the impacts of major parameters on OHRB-mediated reductive dechlorination in groundwater, sediment and soil for future optimization of in situ bioremediation of organohalides.
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Affiliation(s)
- Rui Shen
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, 510006, China
| | - Ling Yu
- Analysis and Test Center, Guangdong University of Technology, Guangzhou, 510006, China
| | - Pan Xu
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, 510006, China
| | - Zhiwei Liang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, 510006, China
| | - Qihong Lu
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, 510006, China
| | - Dawei Liang
- Beijing Key Laboratory of Bio-inspired Energy Materials and Devices, School of Space & Environment, Beihang University, Beijing, 100191, China
| | - Zhili He
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, 510006, China
| | - Shanquan Wang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou, 510006, China.
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31
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Jiao P, Li Z, Yang L, He J, Chang X, Xiao H, Nie X, Tong D. Bacteria are more sensitive than fungi to moisture in eroded soil by natural grass vegetation restoration on the Loess Plateau. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 756:143899. [PMID: 33310219 DOI: 10.1016/j.scitotenv.2020.143899] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 11/17/2020] [Accepted: 11/18/2020] [Indexed: 06/12/2023]
Abstract
Community composition and respiration rates of bacterial and fungal communities from grass-covered eroded soils of the Loess Plateau responded differently to constant and increasing soil moisture (SM) regimes. The soils were incubated with SM contents of 5%, 30%, and 45% and with wetting processes in the SM ranges from 5% to 30% (5-30%), from 5% to 30% to 45% (5-30-45%) and from 30% to 45% (30-45%); high-throughput sequencing and co-occurrence network analyses were applied to investigate the different responses of the bacterial and fungal communities to changed SM. Our results showed that bacteria were more sensitive than fungi to changes in SM. The dominant bacterial communities converted from Actinobacterial to Proteobacteria and Acidobacteria in 5-30-45% wetting procedure. Firmicutes preferred wet condition and exhibited slow resilience. However, no difference was observed for the Chloroflexi communities across any sample. The obvious difference in fungal composition was found between the wetting process of 5-30-45% and constant 45% SM. During the 5-30-45% procedure, the respiration rate was higher than that at 30-45% procedure after incubation for 24 days. The respiration rate in 5-30% procedure was lower than that of 5-30-45% process after incubation for 16-27 days. The larger effects on bacterial response than on fungi were verified in network analysis. Multiple stepwise regression analysis showed that 84.40% of the variation in bacterial richness and diversity as well as fungal diversity can be explained by changes in soil respiration rate in response to wetting procedure. Understanding the response of difference between bacterial and fungal community composition, phylum-levels networks and respiration rate to changes in SM is essential for the management of plant-soil-water relationship in the ecosystem after natural vegetation restoration on the Loess Plateau.
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Affiliation(s)
- Panpan Jiao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling 712100, China; University of Chinese Academy of Sciences, Beijing 100000, China
| | - Zhongwu Li
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling 712100, China; College of Resources and Environmental Sciences, Hunan Normal University, Changsha 410081, China; College of Environmental Science and Engineering, Hunan University, Changsha 410082, China.
| | - Lei Yang
- University of Chinese Academy of Sciences, Beijing 100000, China; Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jijun He
- Base of the State Laboratory of Urban Environmental Processes and Digital Modeling, Key Laboratory of 3D Information Acquisition and Application, Ministry of Education, Capital Normal University, Beijing 100048, China.
| | - Xiaofeng Chang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling 712100, China
| | - Haibing Xiao
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Xiaodong Nie
- College of Resources and Environmental Sciences, Hunan Normal University, Changsha 410081, China
| | - Di Tong
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, China
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32
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Hu Z, Chen C, Chen X, Yao J, Jiang L, Liu M. Home-field advantage in soil respiration and its resilience to drying and rewetting cycles. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 750:141736. [PMID: 32871374 DOI: 10.1016/j.scitotenv.2020.141736] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 08/14/2020] [Accepted: 08/14/2020] [Indexed: 06/11/2023]
Abstract
Climate change is expected to increase extreme weather events, such as more extreme drought and rainfall incidences, with consequences for ecosystem carbon (C) cycling. An understanding of how drying and rewetting (DRW) events affect microbe-mediated soil processes is therefore critical to the predictions of future climate. Here, a reciprocal-transplant experiment was conducted using two soils originated from distinct climate and agricultural managements to evaluate how soil biotic and abiotic properties regulate soil respiration and its resilience to simulated DRW cycles. We found that regardless of the DRW intensity, the effects of microbial community on soil respiration and its resilience to DRW cycles were dependent on soil type. Soil microbial communities yielded higher respiration rates and resilience in native than foreign soils under both one and four DRW cycles, supporting the "home-field advantage" hypothesis. Structural equation modeling demonstrated that soil pH and total C directly influenced soil respiration, but effects of soil abiotic properties on respiration resilience were mediated by microbial communities. Among microbial drivers, the microbial C utilization capacity (as characterized by community-level physiological profile, C-acquisition enzyme activities and microbial metabolic quotients) was the best predictor of respiration resilience to DRW cycles, followed by microbial biomass carbon/nitrogen ratio and microbial community composition. Our study suggests that soil microbial communities may have adapted to their historical conditions, which facilitates the resilience of soil respiration to changing environments, but this adaptation may accelerate C loss from soils facing increasingly variable climate.
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Affiliation(s)
- Zhengkun Hu
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210014, China; School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - Chenying Chen
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210014, China
| | - Xiaoyun Chen
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210014, China
| | - Junneng Yao
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210014, China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - Manqiang Liu
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210014, China.
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Rudgers JA, Afkhami ME, Bell-Dereske L, Chung YA, Crawford KM, Kivlin SN, Mann MA, Nuñez MA. Climate Disruption of Plant-Microbe Interactions. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2020. [DOI: 10.1146/annurev-ecolsys-011720-090819] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Interactions between plants and microbes have important influences on evolutionary processes, population dynamics, community structure, and ecosystem function. We review the literature to document how climate change may disrupt these ecological interactions and develop a conceptual framework to integrate the pathways of plant-microbe responses to climate over different scales in space and time. We then create a blueprint to aid generalization that categorizes climate effects into changes in the context dependency of plant-microbe pairs, temporal mismatches and altered feedbacks over time, or spatial mismatches that accompany species range shifts. We pair a new graphical model of how plant-microbe interactions influence resistance to climate change with a statistical approach to predictthe consequences of increasing variability in climate. Finally, we suggest pathways through which plant-microbe interactions can affect resilience during recovery from climate disruption. Throughout, we take a forward-looking perspective, highlighting knowledge gaps and directions for future research.
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Affiliation(s)
- Jennifer A. Rudgers
- Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA;,
| | - Michelle E. Afkhami
- Department of Biology, University of Miami, Coral Gables, Florida 33157, USA
| | - Lukas Bell-Dereske
- Kellogg Biological Station, Michigan State University, Hickory Corners, Michigan 49060, USA
| | - Y. Anny Chung
- Departments of Plant Biology and Plant Pathology, University of Georgia, Athens, Georgia 30602, USA
| | - Kerri M. Crawford
- Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204, USA
| | - Stephanie N. Kivlin
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee 37996, USA
| | - Michael A. Mann
- Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA;,
| | - Martin A. Nuñez
- Grupo de Ecología de Invasiones, Instituto de Investigaciones en Biodiversidad y Medioambiente, CONICET/Universidad Nacional del Comahue, Bariloche 8400, Argentina
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34
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Crawford KM, Hawkes CV. Soil precipitation legacies influence intraspecific plant-soil feedback. Ecology 2020; 101:e03142. [PMID: 32813278 DOI: 10.1002/ecy.3142] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 05/12/2020] [Accepted: 06/09/2020] [Indexed: 01/04/2023]
Abstract
Feedbacks between plants and soil microbial communities can play an important role in structuring plant communities. However, little is known about how soil legacies caused by environmental disturbances such as drought and extreme precipitation events may affect plant-soil feedback or whether plant-soil feedback operates within species as it does between species. If soil legacies alter plant-soil feedback among genotypes within a plant species, then soil legacies may alter the diversity within plant populations. We conducted a fully factorial pairwise plant-soil feedback experiment to test how precipitation legacies influenced intraspecific plant-soil feedbacks among three genotypes of a dominant grass species, Panicum virgatum. Panicum virgatum experienced negative intraspecific plant-soil feedback, i.e., genotypes generally performed worse on soil from the same genotype than different genotypes. Soil precipitation legacies reversed the rank order of the strength of negative feedback among the genotypes. Feedback is often positively correlated with plant relative abundance. Therefore, our results suggest that soil precipitation legacies may alter the genotypic composition of P. virgatum populations, favoring genotypes that develop less negative feedback. Changes in intraspecific diversity will likely further affect community structure and ecosystem functioning, and may constrain the ability of populations to respond to future changes in climate.
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Affiliation(s)
- Kerri M Crawford
- Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77204, USA
| | - Christine V Hawkes
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas, 78712, USA
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35
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de Vries FT, Griffiths RI, Knight CG, Nicolitch O, Williams A. Harnessing rhizosphere microbiomes for drought-resilient crop production. Science 2020; 368:270-274. [PMID: 32299947 DOI: 10.1126/science.aaz5192] [Citation(s) in RCA: 280] [Impact Index Per Article: 70.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Root-associated microbes can improve plant growth, and they offer the potential to increase crop resilience to future drought. Although our understanding of the complex feedbacks between plant and microbial responses to drought is advancing, most of our knowledge comes from non-crop plants in controlled experiments. We propose that future research efforts should attempt to quantify relationships between plant and microbial traits, explicitly focus on food crops, and include longer-term experiments under field conditions. Overall, we highlight the need for improved mechanistic understanding of the complex feedbacks between plants and microbes during, and particularly after, drought. This requires integrating ecology with plant, microbiome, and molecular approaches and is central to making crop production more resilient to our future climate.
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Affiliation(s)
- Franciska T de Vries
- Department of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PT, UK. .,Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE Amsterdam, Netherlands
| | | | - Christopher G Knight
- Department of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PT, UK
| | - Oceane Nicolitch
- Department of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PT, UK
| | - Alex Williams
- Department of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PT, UK
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36
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Dodds WK, Zeglin LH, Ramos RJ, Platt TG, Pandey A, Michaels T, Masigol M, Klompen AML, Kelly MC, Jumpponen A, Hauser E, Hansen PM, Greer MJ, Fattahi N, Delavaux CS, Connell RK, Billings S, Bever JD, Barua N, Agusto FB. Connections and Feedback: Aquatic, Plant, and Soil Microbiomes in Heterogeneous and Changing Environments. Bioscience 2020. [DOI: 10.1093/biosci/biaa046] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Plant, soil, and aquatic microbiomes interact, but scientists often study them independently. Integrating knowledge across these traditionally separate subdisciplines will generate better understanding of microbial ecological properties. Interactions among plant, soil, and aquatic microbiomes, as well as anthropogenic factors, influence important ecosystem processes, including greenhouse gas fluxes, crop production, nonnative species control, and nutrient flux from terrestrial to aquatic habitats. Terrestrial microbiomes influence nutrient retention and particle movement, thereby influencing the composition and functioning of aquatic microbiomes, which, themselves, govern water quality, and the potential for harmful algal blooms. Understanding how microbiomes drive links among terrestrial (plant and soil) and aquatic habitats will inform management decisions influencing ecosystem services. In the present article, we synthesize knowledge of microbiomes from traditionally disparate fields and how they mediate connections across physically separated systems. We identify knowledge gaps currently limiting our abilities to actualize microbiome management approaches for addressing environmental problems and optimize ecosystem services.
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Affiliation(s)
- Walter K Dodds
- Division of Biology, Kansas State University, Manhattan, Kansas
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37
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Veach AM, Zeglin LH. Historical Drought Affects Microbial Population Dynamics and Activity During Soil Drying and Re-Wet. MICROBIAL ECOLOGY 2020; 79:662-674. [PMID: 31482287 DOI: 10.1007/s00248-019-01432-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2019] [Accepted: 08/21/2019] [Indexed: 06/10/2023]
Abstract
A history of drought exposure promoted by variable precipitation regimes can select for drought-tolerant soil microbial taxa, but the mechanisms of survival and death of microbial populations through the selective stresses of soil drying and re-wet are not well understood. We subjected soils collected from a 15-year field drought experiment ("Altered" precipitation history with extended dry periods, versus the "Ambient" field control) to a laboratory drying/re-wetting experiment, to learn whether selective population survival, death, or maintenance of protein synthesis potential and microbial respiration through variable soil water conditions was affected by field drought legacy. Microbial community composition, as measured by Illumina MiSeq sequencing of the 16S rRNA and 16S rRNA gene, shifted with laboratory drying/re-wet and field drought treatments. In Ambient soils, there was a higher proportion of reduced OTU abundance (indicative of mortality) during re-wet, whereas Altered soils had a greater proportion of stable OTU populations that did not change in abundance (indicative of survival) through drying/re-wet. Altered soils also had a lower proportion of rRNA:rRNA genes (lower protein synthesis potential) during dry-down, a greater weighted mean rRNA operon number (potential growth rate and r-selection) which was associated with higher abundance of Firmicutes (order Bacillales), and lower average microbial respiration rates. These data demonstrate that soils with a weaker historical drought legacy exhibit a higher prevalence of microbial water-stress mortality and differential survival and death at OTU levels following short-term dryingand re-wetting, concurrent with higher carbon loss potential. This work provides novel insight into the mechanisms and consequences of soil microbial changes resulting from extended drought conditions.
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Affiliation(s)
- Allison M Veach
- Division of Biology, Kansas State University, 116 Ackert Hall, Manhattan, KS, 66506, USA
- Department of Environmental Science and Ecology, University of Texas at San Antonio, San Antonio, TX, USA
| | - Lydia H Zeglin
- Division of Biology, Kansas State University, 116 Ackert Hall, Manhattan, KS, 66506, USA.
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38
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Rocca JD, Simonin M, Bernhardt ES, Washburne AD, Wright JP. Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing. Ecology 2020; 101:e02956. [PMID: 31840237 DOI: 10.1002/ecy.2956] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/15/2019] [Revised: 10/01/2019] [Accepted: 11/12/2019] [Indexed: 01/06/2023]
Abstract
Whole microbial communities regularly merge with one another, often in tandem with their environments, in a process called community coalescence. Such events impose substantial changes: abiotic perturbation from environmental blending and biotic perturbation of community merging. We used an aquatic mixing experiment to unravel the effects of these perturbations on the whole microbiome response and on the success of individual taxa when distinct freshwater and marine communities coalesce. We found that an equal mix of freshwater and marine habitats and blended microbiomes resulted in strong convergence of the community structure toward that of the marine microbiome. The enzymatic potential of these blended microbiomes in mixed media also converged toward that of the marine, with strong correlations between the multivariate response patterns of the enzymes and of community structure. Exposing each endmember inocula to an axenic equal mix of their freshwater and marine source waters led to a 96% loss of taxa from our freshwater microbiomes and a 66% loss from our marine microbiomes. When both inocula were added together to this mixed environment, interactions amongst the communities led to a further loss of 29% and 49% of freshwater and marine taxa, respectively. Under both the axenic and competitive scenarios, the diversity lost was somewhat counterbalanced by increased abundance of microbial taxa that were too rare to detect in the initial inocula. Our study emphasizes the importance of the rare biosphere as a critical component of microbial community responses to community coalescence.
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Affiliation(s)
- Jennifer D Rocca
- Department of Biology, Duke University, Durham, North Carolina, 27708, USA
| | - Marie Simonin
- Department of Biology, Duke University, Durham, North Carolina, 27708, USA.,IRD, Cirad, IPME, University of Montpellier, Montpellier, 34080, France
| | - Emily S Bernhardt
- Department of Biology, Duke University, Durham, North Carolina, 27708, USA.,Nicholas School of the Environment, Duke University, Durham, North Carolina, 27708, USA
| | - Alex D Washburne
- Department of Microbiology & Immunology, Montana State University, Bozeman, Montana, 59717, USA
| | - Justin P Wright
- Department of Biology, Duke University, Durham, North Carolina, 27708, USA.,Nicholas School of the Environment, Duke University, Durham, North Carolina, 27708, USA
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39
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Manrubia M, van der Putten WH, Weser C, ten Hooven FC, Martens H, Brinkman EP, Geisen S, Ramirez KS, Veen GF(C. Soil functional responses to drought under range-expanding and native plant communities. Funct Ecol 2019; 33:2402-2416. [PMID: 31894174 PMCID: PMC6919305 DOI: 10.1111/1365-2435.13453] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 08/23/2019] [Accepted: 09/01/2019] [Indexed: 11/30/2022]
Abstract
Current climate warming enables plant species and soil organisms to expand their range to higher latitudes and altitudes. At the same time, climate change increases the incidence of extreme weather events such as drought. While it is expected that plants and soil organisms originating from the south are better able to cope with drought, little is known about the consequences of their range shifts on soil functioning under drought events.Here, we test how range-expanding plant species and soil communities may influence soil functioning under drought. We performed a full-factorial outdoor mesocosm experiment with plant communities of range expanders or related natives, with soil inocula from the novel or the original range, with or without summer drought. We measured litter decomposition, carbon mineralization and enzyme activities, substrate-induced respiration and the relative abundance of soil saprophytic fungi immediately after drought and at 6 and 12 weeks after rewetting.Drought decreased all soil functions regardless of plant and soil origin except one; soil respiration was less reduced in soils of range-expanding plant communities, suggesting stronger resistance to drought. After rewetting, soil functioning responses depended on plant and soil origin. Soils of native plant communities with a history of drought had more litter mass loss and higher relative abundance of saprophytic fungi than soils without drought and soils of range expanders. Functions of soil from range expanders recovered in a more conservative manner than soils of natives, as litter mass loss did not exceed the control rates. At the end of the experiment, after rewetting, most soil functions in mesocosms with drought history did not differ anymore from the control.We conclude that functional consequences of range-expanding plants and soil biota may interact with effects of drought and that these effects are most prominent during the first weeks after rewetting of the soil. A free http://onlinelibrary.wiley.com/doi/10.1111/1365-2435.13453/suppinfo can be found within the Supporting Information of this article.
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Affiliation(s)
- Marta Manrubia
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Wim H. van der Putten
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
- Laboratory of NematologyWageningen UniversityWageningenThe Netherlands
| | - Carolin Weser
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Freddy C. ten Hooven
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Henk Martens
- Department of Soil QualityWageningen UniversityWageningenThe Netherlands
| | - E. Pernilla Brinkman
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Stefan Geisen
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - Kelly S. Ramirez
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
| | - G. F. (Ciska) Veen
- Department of Terrestrial EcologyNetherlands Institute of Ecology (NIOO‐KNAW)WageningenThe Netherlands
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40
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Smith TP, Thomas TJH, García-Carreras B, Sal S, Yvon-Durocher G, Bell T, Pawar S. Community-level respiration of prokaryotic microbes may rise with global warming. Nat Commun 2019; 10:5124. [PMID: 31719536 PMCID: PMC6851113 DOI: 10.1038/s41467-019-13109-1] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 10/18/2019] [Indexed: 11/22/2022] Open
Abstract
Understanding how the metabolic rates of prokaryotes respond to temperature is fundamental to our understanding of how ecosystem functioning will be altered by climate change, as these micro-organisms are major contributors to global carbon efflux. Ecological metabolic theory suggests that species living at higher temperatures evolve higher growth rates than those in cooler niches due to thermodynamic constraints. Here, using a global prokaryotic dataset, we find that maximal growth rate at thermal optimum increases with temperature for mesophiles (temperature optima [Formula: see text]C), but not thermophiles ([Formula: see text]C). Furthermore, short-term (within-day) thermal responses of prokaryotic metabolic rates are typically more sensitive to warming than those of eukaryotes. Because climatic warming will mostly impact ecosystems in the mesophilic temperature range, we conclude that as microbial communities adapt to higher temperatures, their metabolic rates and therefore, biomass-specific CO[Formula: see text] production, will inevitably rise. Using a mathematical model, we illustrate the potential global impacts of these findings.
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Affiliation(s)
- Thomas P Smith
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 7PY, UK.
| | - Thomas J H Thomas
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 7PY, UK
| | - Bernardo García-Carreras
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 7PY, UK
| | - Sofía Sal
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 7PY, UK
| | - Gabriel Yvon-Durocher
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall, TR10 9EZ, UK
| | - Thomas Bell
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 7PY, UK
| | - Samrāt Pawar
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire, SL5 7PY, UK.
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41
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Contrasting Biogeographic Patterns of Bacterial and Archaeal Diversity in the Top- and Subsoils of Temperate Grasslands. mSystems 2019; 4:4/5/e00566-19. [PMID: 31575667 PMCID: PMC6774019 DOI: 10.1128/msystems.00566-19] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Biogeographic patterns and drivers of soil microbial diversity have been extensively studied in the past few decades. However, most research has focused on the topsoil, while the subsoil is assumed to have microbial diversity patterns similar to those of the topsoil. Here we compared patterns and drivers of microbial alpha and beta diversity in and between topsoils (0 to 10 cm) and subsoils (30 to 50 cm) of temperate grasslands in Inner Mongolia of China, covering an ∼1,500-km transect along an aridity gradient. Counter to the conventional assumption, we find contrasting biogeographic patterns of diversity and influencing factors for different bacterial and archaeal groups and between depths. While bacterial diversity remains constant or increases with increasing aridity in topsoil and decreases in subsoil, archaeal diversity decreases in topsoil and remains constant in subsoil. Microbial diversity in the topsoil is most strongly influenced by aboveground vegetation and contemporary climate but is most strongly influenced by the factor historical temperature anomaly since the Last Glacial Maximum (LGM) and by soil pH in the subsoil. Moreover, the biogeographic patterns of topsoil-subsoil community dissimilarities vary for different microbial groups and are overall most strongly influenced by soil fertility differences between depths for bacteria and by contemporary climate for archaea. These findings suggest that diversity patterns observed in the topsoil may not be readily applied to the subsoil horizons. For the subsoil in particular, historical climate plays a vital role in the spatial variation of bacterial diversity. Overall, our study provides novel information for understanding and predicting soil microbial diversity patterns at depth.IMPORTANCE Exploring the biogeographic patterns of soil microbial diversity is critical for understanding mechanisms underlying the response of soil processes to climate change. Using top- and subsoils from an ∼1,500-km temperate grassland transect, we find divergent patterns of microbial diversity and its determinants in the topsoil versus the subsoil. Furthermore, we find important and direct legacy effects of historical climate change on the microbial diversity of subsoil yet indirect effects on topsoil. Our findings challenge the conventional assumption of similar geographic patterns of soil microbial diversity along soil profiles and help to improve our understanding of how soil microbial communities may respond to future climate change in different regions with various climate histories.
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42
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Crowther TW, van den Hoogen J, Wan J, Mayes MA, Keiser AD, Mo L, Averill C, Maynard DS. The global soil community and its influence on biogeochemistry. Science 2019; 365:365/6455/eaav0550. [DOI: 10.1126/science.aav0550] [Citation(s) in RCA: 316] [Impact Index Per Article: 63.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 07/18/2019] [Indexed: 12/17/2022]
Abstract
Soil organisms represent the most biologically diverse community on land and govern the turnover of the largest organic matter pool in the terrestrial biosphere. The highly complex nature of these communities at local scales has traditionally obscured efforts to identify unifying patterns in global soil biodiversity and biogeochemistry. As a result, environmental covariates have generally been used as a proxy to represent the variation in soil community activity in global biogeochemical models. Yet over the past decade, broad-scale studies have begun to see past this local heterogeneity to identify unifying patterns in the biomass, diversity, and composition of certain soil groups across the globe. These unifying patterns provide new insights into the fundamental distribution and dynamics of organic matter on land.
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43
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Averill C, Cates LL, Dietze MC, Bhatnagar JM. Spatial vs. temporal controls over soil fungal community similarity at continental and global scales. THE ISME JOURNAL 2019; 13:2082-2093. [PMID: 31019271 PMCID: PMC6776031 DOI: 10.1038/s41396-019-0420-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Revised: 02/21/2019] [Accepted: 03/20/2019] [Indexed: 11/09/2022]
Abstract
Large-scale environmental sequencing efforts have transformed our understanding of the spatial controls over soil microbial community composition and turnover. Yet, our knowledge of temporal controls is comparatively limited. This is a major uncertainty in microbial ecology, as there is increasing evidence that microbial community composition is important for predicting microbial community function in the future. Here, we use continental- and global-scale soil fungal community surveys, focused within northern temperate latitudes, to estimate the relative contribution of time and space to soil fungal community turnover. We detected large intra-annual temporal differences in soil fungal community similarity, where fungal communities differed most among seasons, equivalent to the community turnover observed over thousands of kilometers in space. inter-annual community turnover was comparatively smaller than intra-annual turnover. Certain environmental covariates, particularly climate covariates, explained some spatial-temporal effects, though it is unlikely the same mechanisms drive spatial vs. temporal turnover. However, these commonly measured environmental covariates could not fully explain relationships between space, time and community composition. These baseline estimates of fungal community turnover in time provide a starting point to estimate the potential duration of legacies in microbial community composition and function.
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Affiliation(s)
- Colin Averill
- Department of Biology, Boston University, 5 Cummington Mall, Boston, MA, USA.
- Department of Earth & Environment, Boston University, Boston, MA, USA.
| | - LeAnna L Cates
- Department of Biology, University of Missouri-Kansas City, Kansas City, MO, USA
| | - Michael C Dietze
- Department of Earth & Environment, Boston University, Boston, MA, USA
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44
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Chung YA, Collins SL, Rudgers JA. Connecting plant–soil feedbacks to long‐term stability in a desert grassland. Ecology 2019; 100:e02756. [DOI: 10.1002/ecy.2756] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 03/26/2019] [Accepted: 04/17/2019] [Indexed: 11/10/2022]
Affiliation(s)
- Y. Anny Chung
- Department of Biology University of New Mexico Albuquerque New Mexico USA
- Departments of Plant Biology and Plant Pathology University of Georgia Athens Georgia 30602 USA
| | - Scott L. Collins
- Department of Biology University of New Mexico Albuquerque New Mexico USA
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45
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González-Domínguez B, Niklaus PA, Studer MS, Hagedorn F, Wacker L, Haghipour N, Zimmermann S, Walthert L, McIntyre C, Abiven S. Temperature and moisture are minor drivers of regional-scale soil organic carbon dynamics. Sci Rep 2019; 9:6422. [PMID: 31015496 PMCID: PMC6478928 DOI: 10.1038/s41598-019-42629-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Accepted: 03/11/2019] [Indexed: 11/12/2022] Open
Abstract
Storing large amounts of organic carbon, soils are a key but uncertain component of the global carbon cycle, and accordingly, of Earth System Models (ESMs). Soil organic carbon (SOC) dynamics are regulated by a complex interplay of drivers. Climate, generally represented by temperature and moisture, is regarded as one of the fundamental controls. Here, we use 54 forest sites in Switzerland, systematically selected to span near-independent gradients in temperature and moisture, to disentangle the effects of climate, soil properties, and landform on SOC dynamics. We estimated two SOC turnover times, based on bulk soil 14C measurements (τ14C) and on a 6-month laboratory soil incubation (τi). In addition, upon incubation, we measured the 14C signature of the CO2 evolved and quantified the cumulated production of dissolved organic carbon (DOC). Our results demonstrate that τi and τ14C capture the dynamics of contrasting fractions of the SOC continuum. The 14C-based τ14C primarily reflects the dynamics of an older, stabilised pool, whereas the incubation-based τi mainly captures fresh readily available SOC. Mean site temperature did not raise as a critical driver of SOC dynamics, and site moisture was only significant for τi. However, soil pH emerged as a key control of both turnover times. The production of DOC was independent of τi and not driven by climate, but primarily by the content of clay and, secondarily by the slope of the site. At the regional scale, soil physicochemical properties and landform appear to override the effect of climate on SOC dynamics.
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Affiliation(s)
- B González-Domínguez
- Department of Geography, Soil Science and Biogeochemistry Unit, University of Zurich (UZH), Winterthurerstrasse 190, 8057, Zurich, Switzerland. .,Department of Evolutionary Biology and Environmental Studies, University of Zurich (UZH), Winterthurerstrasse 190, 8057, Zurich, Switzerland.
| | - P A Niklaus
- Department of Evolutionary Biology and Environmental Studies, University of Zurich (UZH), Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - M S Studer
- Department of Geography, Soil Science and Biogeochemistry Unit, University of Zurich (UZH), Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - F Hagedorn
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - L Wacker
- Department of Physics, Laboratory of Ion Beam Physics, Swiss Federal Institute of Technology (ETH), Otto-Stern-Weg 5, 9083, Zurich, Switzerland
| | - N Haghipour
- Department of Physics, Laboratory of Ion Beam Physics, Swiss Federal Institute of Technology (ETH), Otto-Stern-Weg 5, 9083, Zurich, Switzerland.,Institute of Geology, Department of Earth Sciences, Swiss Federal Institute of Technology (ETH), Sonneggasse 5, 8092, Zurich, Switzerland
| | - S Zimmermann
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - L Walthert
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - C McIntyre
- Department of Physics, Laboratory of Ion Beam Physics, Swiss Federal Institute of Technology (ETH), Otto-Stern-Weg 5, 9083, Zurich, Switzerland.,Institute of Geology, Department of Earth Sciences, Swiss Federal Institute of Technology (ETH), Sonneggasse 5, 8092, Zurich, Switzerland.,AMS Laboratory, Scottish Universities Environmental Research Centre (SUERC), Rankine Avenue, G75 0QF, East Kilbride, UK
| | - S Abiven
- Department of Geography, Soil Science and Biogeochemistry Unit, University of Zurich (UZH), Winterthurerstrasse 190, 8057, Zurich, Switzerland.
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46
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Hinojosa MB, Laudicina VA, Parra A, Albert-Belda E, Moreno JM. Drought and its legacy modulate the post-fire recovery of soil functionality and microbial community structure in a Mediterranean shrubland. GLOBAL CHANGE BIOLOGY 2019; 25:1409-1427. [PMID: 30681232 DOI: 10.1111/gcb.14575] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Revised: 01/15/2019] [Accepted: 01/17/2019] [Indexed: 06/09/2023]
Abstract
The effects of drought on soil dynamics after fire are poorly known, particularly its long-term (i.e., years) legacy effects once rainfall returns to normal. Understanding this is particularly important for nutrient-poor soils in semi-arid regions affected by fire, in which rainfall is projected to decrease with climate change. Here, we studied the effects of post-fire drought and its legacy on soil microbial community structure and functionality in a Cistus-Erica shrubland (Spain). Rainfall total and patterns were experimentally modified to produce an unburned control (natural rainfall) and four burned treatments: control (natural rainfall), historical control (long-term average rainfall), moderate drought (percentile 8 historical rainfall, 5 months of drought per year), and severe drought (percentile 2, 7 months of drought). Soil nutrients and microbial community composition (ester-linked fatty acid approach) and functionality (enzyme activities and C mineralization rate) were monitored during the first 4 years after fire under rainfall treatments, plus two additional ones without them (six post-fire years). We found that the recovery of burned soils was lower under drought. Post-fire drought increased nitrate in the short term and reduced available phosphorus, exchangeable potassium, soil organic matter, enzyme activities, and carbon mineralization rate. Moreover, drought decreased soil total microbial biomass and fungi, with bacteria becoming relatively more abundant. Two years after discontinuing the drought treatments, the drought legacy was significant for available phosphorus and enzyme activities. Although microbial biomass did not show any drought legacy effect, the proportion of fungi and bacteria (mainly gram-positive) did, being lower and higher, respectively, in former drought-treated plots. We show that drought has an important impact on soil processes, and that some of its effects persist for at least 2 years after the drought ended. Therefore, drought and its legacy effects can be important for modeling biogeochemical processes in burned soils under future climate change.
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Affiliation(s)
- María Belén Hinojosa
- Departamento de Ciencias Ambientales, Universidad de Castilla-La Mancha, Campus Fábrica de Armas, Toledo, Spain
| | - Vito Armando Laudicina
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università degli Studi di Palermo, Viale delle Scienze, Palermo, Italy
| | - Antonio Parra
- Departamento de Ciencias Ambientales, Universidad de Castilla-La Mancha, Campus Fábrica de Armas, Toledo, Spain
| | - Enrique Albert-Belda
- Departamento de Ciencias Ambientales, Universidad de Castilla-La Mancha, Campus Fábrica de Armas, Toledo, Spain
| | - José Manuel Moreno
- Departamento de Ciencias Ambientales, Universidad de Castilla-La Mancha, Campus Fábrica de Armas, Toledo, Spain
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47
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Prieto-Amparán JA, Villarreal-Guerrero F, Martínez-Salvador M, Manjarrez-Domínguez C, Vázquez-Quintero G, Pinedo-Alvarez A. Spatial near future modeling of land use and land cover changes in the temperate forests of Mexico. PeerJ 2019; 7:e6617. [PMID: 30923653 PMCID: PMC6431549 DOI: 10.7717/peerj.6617] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 02/11/2019] [Indexed: 11/28/2022] Open
Abstract
The loss of temperate forests of Mexico has continued in recent decades despite wide recognition of their importance to maintaining biodiversity. This study analyzes land use/land cover change scenarios, using satellite images from the Landsat sensor. Images corresponded to the years 1990, 2005 and 2017. The scenarios were applied for the temperate forests with the aim of getting a better understanding of the patterns in land use/land cover changes. The Support Vector Machine (SVM) multispectral classification technique served to determine the land use/land cover types, which were validated through the Kappa Index. For the simulation of land use/land cover dynamics, a model developed in Dinamica-EGO was used, which uses stochastic models of Markov Chains, Cellular Automata and Weight of Evidences. For the study, a stationary, an optimistic and a pessimistic scenario were proposed. The projections based on the three scenarios were simulated for the year 2050. Five types of land use/land cover were identified and evaluated. They were primary forest, secondary forest, human settlements, areas without vegetation and water bodies. Results from the land use/land cover change analysis show a substantial gain for the secondary forest. The surface area of the primary forest was reduced from 55.8% in 1990 to 37.7% in 2017. Moreover, the three projected scenarios estimate further losses of the surface are for the primary forest, especially under the stationary and pessimistic scenarios. This highlights the importance and probably urgent implementation of conservation and protection measures to preserve these ecosystems and their services. Based on the accuracy obtained and on the models generated, results from these methodologies can serve as a decision tool to contribute to the sustainable management of the natural resources of a region.
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Affiliation(s)
- Jesús A Prieto-Amparán
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Chihuahua, Mexico
| | | | - Martin Martínez-Salvador
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Chihuahua, Mexico
| | | | - Griselda Vázquez-Quintero
- Facultad de Ciencias Agrotecnológicas, Universidad Autónoma de Chihuahua, Chihuahua, Chihuahua, Mexico
| | - Alfredo Pinedo-Alvarez
- Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Chihuahua, Mexico
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48
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de Nijs EA, Hicks LC, Leizeaga A, Tietema A, Rousk J. Soil microbial moisture dependences and responses to drying-rewetting: The legacy of 18 years drought. GLOBAL CHANGE BIOLOGY 2019; 25:1005-1015. [PMID: 30387912 DOI: 10.1111/gcb.14508] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 09/27/2018] [Accepted: 10/27/2018] [Indexed: 05/25/2023]
Abstract
Climate change will alter precipitation patterns with consequences for soil C cycling. An understanding of how fluctuating soil moisture affects microbial processes is therefore critical to predict responses to future global change. We investigated how long-term experimental field drought influences microbial tolerance to lower moisture levels ("resistance") and ability to recover when rewetted after drought ("resilience"), using soils from a heathland which had been subjected to experimental precipitation reduction during the summer for 18 years. We tested whether drought could induce increased resistance, resilience, and changes in the balance between respiration and bacterial growth during perturbation events, by following a two-tiered approach. We first evaluated the effects of the long-term summer drought on microbial community functioning to drought and drying-rewetting (D/RW), and second tested the ability to alter resistance and resilience through additional perturbation cycles. A history of summer drought in the field selected for increased resilience but not resistance, suggesting that rewetting after drought, rather than low moisture levels during drought, was the selective pressure shaping the microbial community functions. Laboratory D/RW cycles also selected for communities with a higher resilience rather than increased resistance. The ratio of respiration to bacterial growth during D/RW perturbation was lower for the field drought-exposed communities and decreased for both field treatments during the D/RW cycles. This suggests that cycles of D/RW also structure microbial communities to respond quickly and efficiently to rewetting after drought. Our findings imply that microbial communities can adapt to changing climatic conditions and that this might slow the rate of soil C loss predicted to be induced by future cyclic drought.
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Affiliation(s)
- Evy A de Nijs
- Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
| | - Lettice C Hicks
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Ainara Leizeaga
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Albert Tietema
- Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
| | - Johannes Rousk
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
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49
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Waring B, Hawkes CV. Ecological mechanisms underlying soil bacterial responses to rainfall along a steep natural precipitation gradient. FEMS Microbiol Ecol 2019; 94:4794937. [PMID: 29325015 DOI: 10.1093/femsec/fiy001] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 01/07/2018] [Indexed: 01/27/2023] Open
Abstract
Changes in the structure and function of soil microbial communities can drive substantial ecosystem feedbacks to altered precipitation. However, the ecological mechanisms underlying community responses to environmental change are not well understood. We used an 18-month soil reciprocal transplant experiment along a steep precipitation gradient to quantify how changes in rainfall affected bacterial community structure. We also conducted an enhanced dispersal treatment to ask whether higher immigration rates of taxa from the surrounding environment would accelerate community responses to climate change. Finally, we addressed how the composition of soil bacteria communities was related to the functional response of soil respiration to moisture in these treatments. Bacterial community structure (OTU abundance) and function (respiration rates) changed little in response to manipulation of either rainfall environment or dispersal rates. Although most bacteria were ecological generalists, a subset of specialist taxa, over 40% of which were Actinobacteria, tended to be more abundant in the rainfall environment that matched their original conditions. Bacteria community composition was an important predictor of the respiration response to moisture. Thus, the high compositional resistance of microbial communities dictated respiration responses to altered rainfall in this system.
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Affiliation(s)
- Bonnie Waring
- Department of Biology and Ecology Center, Utah State University, Logan, UT 84322
| | - Christine V Hawkes
- Department of Integrative Biology, The University of Texas at Austin, TX 78712, USA
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50
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Felton AJ, Knapp AK, Smith MD. Carbon exchange responses of a mesic grassland to an extreme gradient of precipitation. Oecologia 2018; 189:565-576. [PMID: 30411149 DOI: 10.1007/s00442-018-4284-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 10/21/2018] [Indexed: 11/24/2022]
Abstract
Growing evidence indicates that ecosystem processes may be differentially sensitive to dry versus wet years, and that current understanding of how precipitation affects ecosystem processes may not be predictive of responses to extremes. In an experiment within a mesic grassland, we addressed this uncertainty by assessing responses of two key carbon exchange processes-aboveground net primary production (ANPP) and soil respiration (Rs)-to an extensive gradient of growing season precipitation. This gradient comprised 11 levels that specifically included extreme values in precipitation; defined as the 1st, 5th, 95th, and 99th percentiles of the 112-year climate record. Across treatments, our experimental precipitation gradient linearly increased soil moisture availability in the rooting zone (upper 20 cm). Relative to ANPP under nominal precipitation amounts (defined as between the 15th and 85th percentiles), the magnitude of ANPP responses were greatest to extreme increases in precipitation, with an underlying linear response to both precipitation and soil moisture gradients. By contrast, Rs exhibited marginally greater responses to dry versus wet extremes, with a saturating relationship best explaining responses of Rs to both precipitation and soil moisture. Our findings indicate a linear relationship between ANPP and precipitation after incorporating responses to precipitation extremes in the ANPP-precipitation relationship, yet in contrast saturating responses of Rs. As a result, current linear ANPP-precipitation relationships (up to ~ 1000 mm) within mesic grasslands appear to hold as appropriate benchmarks for ecosystems models, yet such models should incorporate nonlinearities in responses of Rs amid increased frequencies and magnitudes of precipitation extremes.
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Affiliation(s)
- Andrew J Felton
- Graduate Degree Program in Ecology and Department of Biology, Colorado State University, 251 Pitkin Street, Fort Collins, CO, 80523, USA.
| | - Alan K Knapp
- Graduate Degree Program in Ecology and Department of Biology, Colorado State University, 251 Pitkin Street, Fort Collins, CO, 80523, USA
| | - Melinda D Smith
- Graduate Degree Program in Ecology and Department of Biology, Colorado State University, 251 Pitkin Street, Fort Collins, CO, 80523, USA
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