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Zhu L, Liao Y, Zhang T, Zeng Z, Wang J, Duan L, Chen X, Lin K, Liang X, Han Z, Huang Y, Wu W, Hu H, Xu ZF, Ni J. Reactive oxygen species act as the key signaling molecules mediating light-induced anthocyanin biosynthesis in Eucalyptus. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 212:108715. [PMID: 38761541 DOI: 10.1016/j.plaphy.2024.108715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 05/06/2024] [Accepted: 05/07/2024] [Indexed: 05/20/2024]
Abstract
Light plays a pivotal role in regulating anthocyanin biosynthesis in plants, and the early light-responsive signals that initiate anthocyanin biosynthesis remain to be elucidated. In this study, we showed that the anthocyanin biosynthesis in Eucalyptus is hypersensitive to increased light intensity. The combined transcriptomic and metabolomic analyses were conducted on Eucalyptus leaves after moderate (ML; 100 μmol m-2 s-1) and high (HL; 300 μmol m-2 s-1) light intensity treatments. The results identified 1940, 1096, 1173, and 2756 differentially expressed genes at 6, 12, 24, and 36 h after HL treatment, respectively. The metabolomic results revealed the primary anthocyanin types, and other differentially accumulated flavonoids and phenylpropane intermediates that were produced in response to HL, which well aligned with the transcriptome results. Moreover, biochemical analysis showed that HL inhibited peroxidase activity and increased the ROS level in Eucalyptus leaves. ROS depletion through co-application of the antioxidants rutin, uric acid, and melatonin significantly reduced, and even abolished, anthocyanin biosynthesis induced by HL treatment. Additionally, exogenous application of hydrogen peroxide efficiently induced anthocyanin biosynthesis within 24 h, even under ML conditions, suggesting that ROS played a major role in activating anthocyanin biosynthesis. A HL-responsive MYB transcription factor EgrMYB113 was identified to play an important role in regulating anthocyanin biosynthesis by targeting multiple anthocyanin biosynthesis genes. Additionally, the results demonstrated that gibberellic acid and sugar signaling contributed to HL-induced anthocyanin biosynthesis. Conclusively, these results suggested that HL triggers multiple signaling pathways to induce anthocyanin biosynthesis, with ROS acting as indispensable mediators in Eucalyptus.
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Affiliation(s)
- Linhui Zhu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Yuwu Liao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Tingting Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Zhiyu Zeng
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Jianzhong Wang
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Dongmen Forest Farm, Chongzuo, 532108, China
| | - Lanjuan Duan
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Xin Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Kai Lin
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Xiuqing Liang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Zewei Han
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Yunkai Huang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Wenfei Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Hao Hu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Zeng-Fu Xu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China.
| | - Jun Ni
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Forestry, Guangxi University, Nanning, 530004, China; Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China.
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2
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Gong Q, Wang C, Fan W, Li S, Zhang H, Huang Z, Liu X, Ma Z, Wang Y, Zhang B. RsRbohD1 Plays a Significant Role in ROS Production during Radish Pithiness Development. PLANTS (BASEL, SWITZERLAND) 2024; 13:1386. [PMID: 38794456 PMCID: PMC11125187 DOI: 10.3390/plants13101386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 05/10/2024] [Accepted: 05/13/2024] [Indexed: 05/26/2024]
Abstract
Pithiness is one of the physiological diseases of radishes, which is accompanied by the accumulation of reactive oxygen species (ROS) during the sponging of parenchyma tissue in the fleshy roots. A respiratory burst oxidase homolog (Rboh, also known as NADPH oxidase) is a key enzyme that catalyzes the production of ROS in plants. To understand the role of Rboh genes in radish pithiness, herein, 10 RsRboh gene families were identified in the genome of Raphanus sativus using Blastp and Hmmer searching methods and were subjected to basic functional analyses such as phylogenetic tree construction, chromosomal localization, conserved structural domain analysis, and promoter element prediction. The expression profiles of RsRbohs in five stages (Pithiness grade = 0, 1, 2, 3, 4, respectively) of radish pithiness were analyzed. The results showed that 10 RsRbohs expressed different levels during the development of radish pithiness. Except for RsRbohB and RsRbohE, the expression of other members increased and reached the peak at the P2 (Pithiness grade = 2) stage, among which RsRbohD1 showed the highest transcripts. Then, the expression of 40 genes related to RsRbohD1 and pithiness were analyzed. These results can provide a theoretical basis for improving pithiness tolerance in radishes.
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Affiliation(s)
- Qiong Gong
- College of Life Sciences, Nankai University, Weijin Road 94, Tianjin 300071, China; (Q.G.); (S.L.)
| | - Chaonan Wang
- Tianjin Academy of Agricultural Sciences, Vegetable Research Institute, Tianjin 300381, China; (C.W.); (Z.H.); (X.L.)
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China; (W.F.); (H.Z.)
| | - Weiqiang Fan
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China; (W.F.); (H.Z.)
- Tianjin Kernel Agricultural Science and Technology Co., Ltd., Vegetable Research Institute, Tianjin 300381, China
| | - Shuiling Li
- College of Life Sciences, Nankai University, Weijin Road 94, Tianjin 300071, China; (Q.G.); (S.L.)
| | - Hong Zhang
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China; (W.F.); (H.Z.)
- Tianjin Kernel Agricultural Science and Technology Co., Ltd., Vegetable Research Institute, Tianjin 300381, China
| | - Zhiyin Huang
- Tianjin Academy of Agricultural Sciences, Vegetable Research Institute, Tianjin 300381, China; (C.W.); (Z.H.); (X.L.)
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China; (W.F.); (H.Z.)
| | - Xiaohui Liu
- Tianjin Academy of Agricultural Sciences, Vegetable Research Institute, Tianjin 300381, China; (C.W.); (Z.H.); (X.L.)
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China; (W.F.); (H.Z.)
| | - Ziyun Ma
- College of Life Sciences, Tianjin Normal University, Tianjin 300387, China;
| | - Yong Wang
- College of Life Sciences, Nankai University, Weijin Road 94, Tianjin 300071, China; (Q.G.); (S.L.)
| | - Bin Zhang
- Tianjin Academy of Agricultural Sciences, Vegetable Research Institute, Tianjin 300381, China; (C.W.); (Z.H.); (X.L.)
- State Key Laboratory of Vegetable Biobreeding, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China; (W.F.); (H.Z.)
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3
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Lethe MCL, Paris V, Wang X, Chan CTY. Similarities in Structure and Function of UDP-Glycosyltransferase Homologs from Human and Plants. Int J Mol Sci 2024; 25:2782. [PMID: 38474028 PMCID: PMC10932239 DOI: 10.3390/ijms25052782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Revised: 02/23/2024] [Accepted: 02/25/2024] [Indexed: 03/14/2024] Open
Abstract
The uridine diphosphate glycosyltransferase (UGT) superfamily plays a key role in the metabolism of xenobiotics and metabolic wastes, which is essential for detoxifying those species. Over the last several decades, a huge effort has been put into studying human and mammalian UGT homologs, but family members in other organisms have been explored much less. Potentially, other UGT homologs can have desirable substrate specificity and biological activities that can be harnessed for detoxification in various medical settings. In this review article, we take a plant UGT homology, UGT71G1, and compare its structural and biochemical properties with the human homologs. These comparisons suggest that even though mammalian and plant UGTs are functional in different environments, they may support similar biochemical activities based on their protein structure and function. The known biological functions of these homologs are discussed so as to provide insights into the use of UGT homologs from other organisms for addressing human diseases related to UGTs.
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Affiliation(s)
- Mary Caroline L. Lethe
- Department of Biomedical Engineering, College of Engineering, University of North Texas, 3940 N Elm Street, Denton, TX 76207, USA (V.P.)
| | - Vincent Paris
- Department of Biomedical Engineering, College of Engineering, University of North Texas, 3940 N Elm Street, Denton, TX 76207, USA (V.P.)
| | - Xiaoqiang Wang
- Department of Biological Sciences, College of Science, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA;
- BioDiscovery Institute, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA
| | - Clement T. Y. Chan
- Department of Biomedical Engineering, College of Engineering, University of North Texas, 3940 N Elm Street, Denton, TX 76207, USA (V.P.)
- BioDiscovery Institute, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA
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4
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Mahapatra K, Mukherjee A, Suyal S, Dar MA, Bhagavatula L, Datta S. Regulation of chloroplast biogenesis, development, and signaling by endogenous and exogenous cues. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2024; 30:167-183. [PMID: 38623168 PMCID: PMC11016055 DOI: 10.1007/s12298-024-01427-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 02/07/2024] [Accepted: 02/27/2024] [Indexed: 04/17/2024]
Abstract
Chloroplasts are one of the defining features in most plants, primarily known for their unique property to carry out photosynthesis. Besides this, chloroplasts are also associated with hormone and metabolite productions. For this, biogenesis and development of chloroplast are required to be synchronized with the seedling growth to corroborate the maximum rate of photosynthesis following the emergence of seedlings. Chloroplast biogenesis and development are dependent on the signaling to and from the chloroplast, which are in turn regulated by several endogenous and exogenous cues. Light and hormones play a crucial role in chloroplast maturation and development. Chloroplast signaling involves a coordinated two-way connection between the chloroplast and nucleus, termed retrograde and anterograde signaling, respectively. Anterograde and retrograde signaling are involved in regulation at the transcriptional level and downstream modifications and are modulated by several metabolic and external cues. The communication between chloroplast and nucleus is essential for plants to develop strategies to cope with various stresses including high light or high heat. In this review, we have summarized several aspects of chloroplast development and its regulation through the interplay of various external and internal factors. We have also discussed the involvement of chloroplasts as sensors of various external environment stress factors including high light and temperature, and communicate via a series of retrograde signals to the nucleus, thus playing an essential role in plants' abiotic stress response.
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Affiliation(s)
- Kalyan Mahapatra
- Plant Cell and Developmental Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, Madhya Pradesh 462066 India
| | - Arpan Mukherjee
- Plant Cell and Developmental Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, Madhya Pradesh 462066 India
| | - Shikha Suyal
- Plant Cell and Developmental Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, Madhya Pradesh 462066 India
| | - Mansoor Ali Dar
- Plant Cell and Developmental Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, Madhya Pradesh 462066 India
| | | | - Sourav Datta
- Plant Cell and Developmental Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Bhopal, Madhya Pradesh 462066 India
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5
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Mahiwal S, Pahuja S, Pandey GK. Review: Structural-functional relationship of WRKY transcription factors: Unfolding the role of WRKY in plants. Int J Biol Macromol 2024; 257:128769. [PMID: 38096937 DOI: 10.1016/j.ijbiomac.2023.128769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/03/2023] [Accepted: 12/11/2023] [Indexed: 12/18/2023]
Abstract
WRKY as the name suggests, are the transcription factors (TFs) that contain the signature WRKY domains, hence named after it. Since their discovery in 1994, they have been well studied in plants with exploration of approximately 74 WRKY genes in the model plant, Arabidopsis alone. However, the study of these transcription factors (TFs) is not just limited to model plant now. They have been studied widely in crop plants as well, because of their tremendous contribution in stress as well as in growth and development. Here, in this review, we describe the story of WRKY TFs from their identification to their origin, the binding mechanisms, structure and their contribution in regulating plant development and stress physiology. High throughput transcriptomics-based data also opened a doorway to understand the comprehensive and detailed functioning of WRKY TFs in plants. Indeed, the detailed functional role of each and every WRKY member in regulating the gene expression is required to pave the path to develop holistic understanding of their role in stress physiology and developmental processes in plants.
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Affiliation(s)
- Swati Mahiwal
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi 110021, India
| | - Sonam Pahuja
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi 110021, India
| | - Girdhar K Pandey
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi 110021, India.
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6
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Prazyan A, Podlutskii M, Volkova P, Kazakova E, Bitarishvili S, Shesterikova E, Saburov V, Makarenko E, Lychenkova M, Korol M, Kazakov E, Moiseev A, Geras’kin S, Bondarenko E. Comparative Analysis of the Effect of Gamma-, Electron, and Proton Irradiation on Transcriptomic Profile of Hordeum vulgare L. Seedlings: In Search for Molecular Contributors to Abiotic Stress Resilience. PLANTS (BASEL, SWITZERLAND) 2024; 13:342. [PMID: 38337875 PMCID: PMC10857502 DOI: 10.3390/plants13030342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 01/19/2024] [Accepted: 01/20/2024] [Indexed: 02/12/2024]
Abstract
The development of adaptation strategies for crops under ever-changing climate conditions is a critically important food security issue. Studies of barley responses to ionising radiation showed that this evolutionarily ancient stress factor can be successfully used to identify molecular pathways involved in adaptation to a range of abiotic stressors. In order to identify potential molecular contributors to abiotic stress resilience, we examined the transcriptomic profiles of barley seedlings after exposure to γ-rays, electrons, and protons. A total of 553 unique differentially expressed genes with increased expression and 124 with decreased expression were detected. Among all types of radiation, the highest number of differentially expressed genes was observed in electron-irradiated samples (428 upregulated and 56 downregulated genes). Significant upregulation after exposure to the three types of radiation was shown by a set of ROS-responsive genes, genes involved in DNA repair, cell wall metabolism, auxin biosynthesis and signalling, as well as photosynthesis-related genes. Most of these genes are known to be involved in plant ROS-mediated responses to other abiotic stressors, especially with genotoxic components, such as heavy metals and drought. Ultimately, the modulation of molecular pathways of plant responses to ionising radiation may be a prospective tool for stress tolerance programmes.
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Affiliation(s)
- Alexander Prazyan
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Mikhail Podlutskii
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | | | - Elizaveta Kazakova
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Sofia Bitarishvili
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Ekaterina Shesterikova
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Vyacheslav Saburov
- A. Tsyb Medical Radiological Research Centre—Branch of the National Medical Research Radiological Centre of the Ministry of Health of the Russian Federation, 249036 Obninsk, Russia
| | - Ekaterina Makarenko
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Maria Lychenkova
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Marina Korol
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Evgeniy Kazakov
- A. Tsyb Medical Radiological Research Centre—Branch of the National Medical Research Radiological Centre of the Ministry of Health of the Russian Federation, 249036 Obninsk, Russia
| | - Alexander Moiseev
- A. Tsyb Medical Radiological Research Centre—Branch of the National Medical Research Radiological Centre of the Ministry of Health of the Russian Federation, 249036 Obninsk, Russia
| | - Stanislav Geras’kin
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
| | - Ekaterina Bondarenko
- Russian Institute of Radiology and Agroecology of National Research Centre “Kurchatov Institute”, 249035 Obninsk, Russia
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7
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Ceylan Y, Altunoglu YC, Horuz E. HSF and Hsp Gene Families in sunflower: a comprehensive genome-wide determination survey and expression patterns under abiotic stress conditions. PROTOPLASMA 2023; 260:1473-1491. [PMID: 37154904 DOI: 10.1007/s00709-023-01862-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 04/24/2023] [Indexed: 05/10/2023]
Abstract
Sunflowers belong to the Asteraceae family, which comprises nutrimental and economic oilseed plants. Heat shock proteins (Hsps) are protein families vital for all organisms' growth and survival. Besides the ordinary conditions, the expression of these proteins ascends during abiotic stress factors such as high temperature, salinity, and drought. Using bioinformatics approaches, the current study identified and analyzed HSF and Hsp gene family members in the sunflower (Helianthus annuus L.) plant. HSF, sHsp, Hsp40, Hsp60, Hsp70, Hsp90, and Hsp100 domains were analyzed in the sunflower genome, and 88, 72, 192, 52, 85, 49, and 148 genes were identified, respectively. The motif structures of the proteins in the same phylogenetic tree were similar, and the α-helical form was dominant in all the protein families except for sHsp. The estimated three-dimensional structure of 28 sHsp proteins was determined as β-sheets. Considering protein-protein interactions, the Hsp60-09 protein (38 interactions) was found to be the most interacting protein. The most orthologous gene pairs (58 genes) were identified between Hsp70 genes and Arabidopsis genes. The expression analysis of selected genes was performed under high temperature, drought, and high temperature-drought combined stress conditions in two sunflower cultivars. In stress conditions, gene expressions were upregulated for almost all genes in the first half and first hours at large. The expressions of HanHSF-45 and HanHsp70-29 genes were raised in two cultivars under high temperature and high temperature-drought combined stress conditions. This study presents a blueprint for subsequent research and delivers comprehensive knowledge of this vital protein domain.
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Affiliation(s)
- Yusuf Ceylan
- Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey
- Department of Molecular Biology and Genetics, Faculty of Science, Bartın University, Bartin, Turkey
| | - Yasemin Celik Altunoglu
- Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey.
| | - Erdoğan Horuz
- Department of Genetics and Bioengineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey
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8
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Geng R, Pang X, Li X, Shi S, Hedtke B, Grimm B, Bock R, Huang J, Zhou W. PROGRAMMED CELL DEATH8 interacts with tetrapyrrole biosynthesis enzymes and ClpC1 to maintain homeostasis of tetrapyrrole metabolites in Arabidopsis. THE NEW PHYTOLOGIST 2023; 238:2545-2560. [PMID: 36967598 DOI: 10.1111/nph.18906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 03/19/2023] [Indexed: 05/19/2023]
Abstract
Tetrapyrrole biosynthesis (TBS) is a dynamically and strictly regulated process. Disruptions in tetrapyrrole metabolism influence many aspects of plant physiology, including photosynthesis, programmed cell death (PCD), and retrograde signaling, thus affecting plant growth and development at multiple levels. However, the genetic and molecular basis of TBS is not fully understood. We report here PCD8, a newly identified thylakoid-localized protein encoded by an essential gene in Arabidopsis. PCD8 knockdown causes a necrotic phenotype due to excessive chloroplast damage. A burst of singlet oxygen that results from overaccumulated tetrapyrrole intermediates upon illumination is suggested to be responsible for cell death in the knockdown mutants. Genetic and biochemical analyses revealed that PCD8 interacts with ClpC1 and a number of TBS enzymes, such as HEMC, CHLD, and PORC of TBS. Taken together, our findings uncover the function of chloroplast-localized PCD8 and provide a new perspective to elucidate molecular mechanism of how TBS is finely regulated in plants.
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Affiliation(s)
- Rudan Geng
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xiaoqing Pang
- Institute of Biology/Plant Physiology, Humboldt-Universität zu Berlin, Philippstraße 13, Berlin, 10115, Germany
| | - Xia Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Shanshan Shi
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Boris Hedtke
- Institute of Biology/Plant Physiology, Humboldt-Universität zu Berlin, Philippstraße 13, Berlin, 10115, Germany
| | - Bernhard Grimm
- Institute of Biology/Plant Physiology, Humboldt-Universität zu Berlin, Philippstraße 13, Berlin, 10115, Germany
| | - Ralph Bock
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476, Potsdam-Golm, Germany
| | - Jirong Huang
- Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China
| | - Wenbin Zhou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
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9
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Lv X, Li Y, Chen R, Rui M, Wang Y. Stomatal Responses of Two Drought-Tolerant Barley Varieties with Different ROS Regulation Strategies under Drought Conditions. Antioxidants (Basel) 2023; 12:antiox12040790. [PMID: 37107165 PMCID: PMC10135251 DOI: 10.3390/antiox12040790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 03/14/2023] [Accepted: 03/20/2023] [Indexed: 04/29/2023] Open
Abstract
Drought stress is a major obstacle to agricultural production. Stomata are central to efforts to improve photosynthesis and water use. They are targets for manipulation to improve both processes and the balance between them. An in-depth understanding of stomatal behavior and kinetics is important for improving photosynthesis and the WUE of crops. In this study, a drought stress pot experiment was performed, and a transcriptome analysis of the leaves of three contrasting, cultivated barley genotypes Lumley (Lum, drought-tolerant), Golden Promise (GP, drought-sensitive), and Tadmor (Tad, drought-tolerant), generated by high-throughput sequencing, were compared. Lum exhibited a different WUE at the leaf and whole-plant levels and had greater CO2 assimilation, with a higher gs under drought stress. Interestingly, Lum showed a slower stomatal closure in response to a light-dark transition and significant differences compared to Tad in stomatal response to the exogenous application of ABA, H2O2, and CaCl2. A transcriptome analysis revealed that 24 ROS-related genes were indeed involved in drought response regulation, and impaired ABA-induced ROS accumulation in Lum was identified using ROS and antioxidant capacity measurements. We conclude that different stomatal ROS responses affect stomatal closure in barley, demonstrating different drought regulation strategies. These results provide valuable insight into the physiological and molecular basis of stomatal behavior and drought tolerance in barley.
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Affiliation(s)
- Xiachen Lv
- Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - Yihong Li
- Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - Rongjia Chen
- Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - Mengmeng Rui
- Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - Yizhou Wang
- Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou 310058, China
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10
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Willems P, Van Ruyskensvelde V, Maruta T, Pottie R, Fernández-Fernández ÁD, Pauwels J, Hannah MA, Gevaert K, Van Breusegem F, Van der Kelen K. Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience. Free Radic Biol Med 2023; 200:117-129. [PMID: 36870374 DOI: 10.1016/j.freeradbiomed.2023.02.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 01/18/2023] [Accepted: 02/27/2023] [Indexed: 03/06/2023]
Abstract
Alternative splicing is a key posttranscriptional gene regulatory process, acting in diverse adaptive and basal plant processes. Splicing of precursor-messenger RNA (pre-mRNA) is catalyzed by a dynamic ribonucleoprotein complex, designated the spliceosome. In a suppressor screen, we identified a nonsense mutation in the Smith (Sm) antigen protein SME1 to alleviate photorespiratory H2O2-dependent cell death in catalase deficient plants. Similar attenuation of cell death was observed upon chemical inhibition of the spliceosome, suggesting pre-mRNA splicing inhibition to be responsible for the observed cell death alleviation. Furthermore, the sme1-2 mutants showed increased tolerance to the reactive oxygen species inducing herbicide methyl viologen. Both an mRNA-seq and shotgun proteomic analysis in sme1-2 mutants displayed a constitutive molecular stress response, together with extensive alterations in pre-mRNA splicing of transcripts encoding metabolic enzymes and RNA binding proteins, even under unstressed conditions. Using SME1 as a bait to identify protein interactors, we provide experimental evidence for almost 50 homologs of the mammalian spliceosome-associated protein to reside in the Arabidopsis thaliana spliceosome complexes and propose roles in pre-mRNA splicing for four uncharacterized plant proteins. Furthermore, as for sme1-2, a mutant in the Sm core assembly protein ICLN resulted in a decreased sensitivity to methyl viologen. Taken together, these data show that both a perturbed Sm core composition and assembly results in the activation of a defense response and in enhanced resilience to oxidative stress.
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Affiliation(s)
- Patrick Willems
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium; Department of Biomolecular Medicine, Ghent University, Technologiepark 75, 9052, Ghent, Belgium; Center for Medical Biotechnology, VIB, Technologiepark 75, 9052, Ghent, Belgium.
| | - Valerie Van Ruyskensvelde
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium.
| | - Takanori Maruta
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium; Department of Life Sciences, Faculty of Life and Environmental Sciences, Shimane University, 1060 Nishikawatsu-cho, Matsue, Shimane, 690-8504, Japan.
| | - Robin Pottie
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium.
| | - Álvaro D Fernández-Fernández
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium.
| | - Jarne Pauwels
- Department of Biomolecular Medicine, Ghent University, Technologiepark 75, 9052, Ghent, Belgium; Center for Medical Biotechnology, VIB, Technologiepark 75, 9052, Ghent, Belgium.
| | - Matthew A Hannah
- BASF Belgium Coordination Center, Innovation Center Gent, Technologiepark 101, 9052, Ghent, Belgium.
| | - Kris Gevaert
- Department of Biomolecular Medicine, Ghent University, Technologiepark 75, 9052, Ghent, Belgium; Center for Medical Biotechnology, VIB, Technologiepark 75, 9052, Ghent, Belgium.
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium.
| | - Katrien Van der Kelen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052, Ghent, Belgium; Center for Plant Systems Biology, VIB, Technologiepark 71, 9052, Ghent, Belgium.
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11
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Sandalio LM, Collado-Arenal AM, Romero-Puertas MC. Deciphering peroxisomal reactive species interactome and redox signalling networks. Free Radic Biol Med 2023; 197:58-70. [PMID: 36642282 DOI: 10.1016/j.freeradbiomed.2023.01.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 12/19/2022] [Accepted: 01/12/2023] [Indexed: 01/15/2023]
Abstract
Plant peroxisomes are highly dynamic organelles with regard to metabolic pathways, number and morphology and participate in different metabolic processes and cell responses to their environment. Peroxisomes from animal and plant cells house a complex system of reactive oxygen species (ROS) production associated to different metabolic pathways which are under control of an important set of enzymatic and non enzymatic antioxidative defenses. Nitric oxide (NO) and its derivate reactive nitrogen species (RNS) are also produced in these organelles. Peroxisomes can regulate ROS and NO/RNS levels to allow their role as signalling molecules. The metabolism of other reactive species such as carbonyl reactive species (CRS) and sulfur reactive species (SRS) in peroxisomes and their relationship with ROS and NO have not been explored in depth. In this review, we define a peroxisomal reactive species interactome (PRSI), including all reactive species ROS, RNS, CRS and SRS, their interaction and effect on target molecules contributing to the dynamic redox/ROS homeostasis and plasticity of peroxisomes, enabling fine-tuned regulation of signalling networks associated with peroxisome-dependent H2O2. Particular attention will be paid to update the information available on H2O2-dependent peroxisomal retrograde signalling and to discuss a specific peroxisomal footprint.
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Affiliation(s)
- Luisa M Sandalio
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain.
| | - Aurelio M Collado-Arenal
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain
| | - María C Romero-Puertas
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain
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12
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Lelarge-Trouverie C, Cohen M, Trémulot L, Van Breusegem F, Mhamdi A, Noctor G. Metabolite modification in oxidative stress responses: A case study of two defense hormones. Free Radic Biol Med 2023; 196:145-155. [PMID: 36634883 DOI: 10.1016/j.freeradbiomed.2023.01.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 01/05/2023] [Accepted: 01/08/2023] [Indexed: 01/11/2023]
Abstract
Studies of the Arabidopsis cat2 mutant lacking the major leaf isoform of catalase have allowed the potential impact of intracellular H2O2 on plant function to be studied. Here, we report a robust analysis of modified gene expression associated with key families involved in metabolite modification in cat2. Through a combined transcriptomic and metabolomic analysis focused on the salicylic acid (SA) and jasmonic acid (JA) pathways, we report key features of the metabolic signatures linked to oxidative stress-induced signaling via these defence hormones and discuss the enzymes that are likely to be involved in determining these features. We provide evidence that specific UDP-glycosyl transferases contribute to the glucosylation of SA that accumulates as a result of oxidative stress in cat2. Glycosides of dihydroxybenzoic acids that accumulate alongside SA in cat2 are identified and, based on the expression of candidate genes, likely routes for their production are discussed. We also report that enhanced intracellular H2O2 triggers induction of genes encoding different enzymes that can metabolize JA. Integrated analysis of metabolite and transcript profiles suggests that a gene network involving specific hydrolases, hydroxylases, and sulfotransferases functions to limit accumulation of the most active jasmonates during oxidative stress.
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Affiliation(s)
- Caroline Lelarge-Trouverie
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France
| | - Mathias Cohen
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France
| | - Lug Trémulot
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium; VIB Center of Plant Systems Biology, 9052, Ghent, Belgium
| | - Amna Mhamdi
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium; VIB Center of Plant Systems Biology, 9052, Ghent, Belgium
| | - Graham Noctor
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France; Institut Universitaire de France (IUF), France.
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13
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Cresta A, D’Alessandro S. Arabidopsis ANAC102, Chloroplastic or Nucleocytosolic Localization? Genes (Basel) 2023; 14:438. [PMID: 36833365 PMCID: PMC9956179 DOI: 10.3390/genes14020438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 02/03/2023] [Accepted: 02/07/2023] [Indexed: 02/11/2023] Open
Abstract
ANAC102 is a transcription factor involved in stress response and brassinosteroids signaling, with circadian regulation controlled by phytochromes. ANAC102 has been proposed to have a role in downregulating chloroplast transcription, which may be very useful in reducing photosynthesis and chloroplast energy demand under stress conditions. However, its localization in the chloroplast has mainly been demonstrated by using constitutive promoters. In this work, we recapitulate the literature, clarify which are ANAC102 isoforms in Arabidopsis and analyze their expressions under control conditions and in response to stress. Based on our results, the most highly expressed ANAC102 isoform encodes for a nucleocytoplasmic protein and the N-terminal chloroplast-targeting peptide appears to be present only in Brassicaceae, and not involved in stress response.
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Affiliation(s)
| | - Stefano D’Alessandro
- Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, 10135 Turin, Italy
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14
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Zirngibl ME, Araguirang GE, Kitashova A, Jahnke K, Rolka T, Kühn C, Nägele T, Richter AS. Triose phosphate export from chloroplasts and cellular sugar content regulate anthocyanin biosynthesis during high light acclimation. PLANT COMMUNICATIONS 2023; 4:100423. [PMID: 35962545 PMCID: PMC9860169 DOI: 10.1016/j.xplc.2022.100423] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2022] [Revised: 07/22/2022] [Accepted: 08/09/2022] [Indexed: 05/07/2023]
Abstract
Plants have evolved multiple strategies to cope with rapid changes in the environment. During high light (HL) acclimation, the biosynthesis of photoprotective flavonoids, such as anthocyanins, is induced. However, the exact nature of the signal and downstream factors for HL induction of flavonoid biosynthesis (FB) is still under debate. Here, we show that carbon fixation in chloroplasts, subsequent export of photosynthates by triose phosphate/phosphate translocator (TPT), and rapid increase in cellular sugar content permit the transcriptional and metabolic activation of anthocyanin biosynthesis during HL acclimation. In combination with genetic and physiological analysis, targeted and whole-transcriptome gene expression studies suggest that reactive oxygen species and phytohormones play only a minor role in rapid HL induction of the anthocyanin branch of FB. In addition to transcripts of FB, sugar-responsive genes showed delayed repression or induction in tpt-2 during HL treatment, and a significant overlap with transcripts regulated by SNF1-related protein kinase 1 (SnRK1) was observed, including a central transcription factor of FB. Analysis of mutants with increased and repressed SnRK1 activity suggests that sugar-induced inactivation of SnRK1 is required for HL-mediated activation of anthocyanin biosynthesis. Our study emphasizes the central role of chloroplasts as sensors for environmental changes as well as the vital function of sugar signaling in plant acclimation.
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Affiliation(s)
- Max-Emanuel Zirngibl
- Humboldt-Universität zu Berlin, Institute of Biology, Physiology of Plant Cell Organelles, Philippstrasse 13, 10115 Berlin, Germany
| | - Galileo Estopare Araguirang
- University of Rostock, Institute for Biosciences, Physiology of Plant Metabolism, Albert-Einstein-Strasse 3, 18059 Rostock, Germany; Humboldt-Universität zu Berlin, Institute of Biology, Physiology of Plant Cell Organelles, Philippstrasse 13, 10115 Berlin, Germany
| | - Anastasia Kitashova
- Ludwig-Maximilians-Universität München, Faculty of Biology, Plant Evolutionary Cell Biology, 82152 Planegg-Martinsried, Germany
| | - Kathrin Jahnke
- University of Rostock, Institute for Biosciences, Physiology of Plant Metabolism, Albert-Einstein-Strasse 3, 18059 Rostock, Germany
| | - Tobias Rolka
- Humboldt-Universität zu Berlin, Institute of Biology, Physiology of Plant Cell Organelles, Philippstrasse 13, 10115 Berlin, Germany
| | - Christine Kühn
- University of Rostock, Institute for Biosciences, Physiology of Plant Metabolism, Albert-Einstein-Strasse 3, 18059 Rostock, Germany
| | - Thomas Nägele
- Ludwig-Maximilians-Universität München, Faculty of Biology, Plant Evolutionary Cell Biology, 82152 Planegg-Martinsried, Germany
| | - Andreas S Richter
- University of Rostock, Institute for Biosciences, Physiology of Plant Metabolism, Albert-Einstein-Strasse 3, 18059 Rostock, Germany; Humboldt-Universität zu Berlin, Institute of Biology, Physiology of Plant Cell Organelles, Philippstrasse 13, 10115 Berlin, Germany.
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15
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Richter AS, Nägele T, Grimm B, Kaufmann K, Schroda M, Leister D, Kleine T. Retrograde signaling in plants: A critical review focusing on the GUN pathway and beyond. PLANT COMMUNICATIONS 2023; 4:100511. [PMID: 36575799 PMCID: PMC9860301 DOI: 10.1016/j.xplc.2022.100511] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 12/05/2022] [Accepted: 12/22/2022] [Indexed: 06/01/2023]
Abstract
Plastids communicate their developmental and physiological status to the nucleus via retrograde signaling, allowing nuclear gene expression to be adjusted appropriately. Signaling during plastid biogenesis and responses of mature chloroplasts to environmental changes are designated "biogenic" and "operational" controls, respectively. A prominent example of the investigation of biogenic signaling is the screen for gun (genomes uncoupled) mutants. Although the first five gun mutants were identified 30 years ago, the functions of GUN proteins in retrograde signaling remain controversial, and that of GUN1 is hotly disputed. Here, we provide background information and critically discuss recently proposed concepts that address GUN-related signaling and some novel gun mutants. Moreover, considering heme as a candidate in retrograde signaling, we revisit the spatial organization of heme biosynthesis and export from plastids. Although this review focuses on GUN pathways, we also highlight recent progress in the identification and elucidation of chloroplast-derived signals that regulate the acclimation response in green algae and plants. Here, stress-induced accumulation of unfolded/misassembled chloroplast proteins evokes a chloroplast-specific unfolded protein response, which leads to changes in the expression levels of nucleus-encoded chaperones and proteases to restore plastid protein homeostasis. We also address the importance of chloroplast-derived signals for activation of flavonoid biosynthesis leading to production of anthocyanins during stress acclimation through sucrose non-fermenting 1-related protein kinase 1. Finally, a framework for identification and quantification of intercompartmental signaling cascades at the proteomic and metabolomic levels is provided, and we discuss future directions of dissection of organelle-nucleus communication.
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Affiliation(s)
- Andreas S Richter
- Physiology of Plant Metabolism, Institute for Biosciences, University of Rostock, Albert-Einstein-Str. 3, 18059 Rostock, Germany
| | - Thomas Nägele
- Plant Evolutionary Cell Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany
| | - Bernhard Grimm
- Institute of Biology/Plant Physiology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115 Berlin, Germany
| | - Kerstin Kaufmann
- Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115 Berlin, Germany
| | - Michael Schroda
- Molecular Biotechnology and Systems Biology, TU Kaiserslautern, Kaiserslautern, Germany
| | - Dario Leister
- Plant Molecular Biology (Botany), Faculty of Biology, Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany
| | - Tatjana Kleine
- Plant Molecular Biology (Botany), Faculty of Biology, Ludwig-Maximilians-Universität München, 82152 Planegg-Martinsried, Germany.
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16
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Noctor G, Cohen M, Trémulot L, Van Breusegem F, Mhamdi A. Quantitative Measurements of Biochemical and Molecular Markers of Oxidative Stress Signaling and Responses. Methods Mol Biol 2023; 2642:197-214. [PMID: 36944880 DOI: 10.1007/978-1-0716-3044-0_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
Increases in cellular oxidation are a part of most plant responses to challenging conditions and are commonly described as oxidative stress. While this phenomenon is closely related to the accumulation of reactive oxygen species, these latter compounds can be difficult to measure. Complementary measurements to assess cellular redox state are, therefore, very useful in studies of plant responses to stress. Here, we detail protocols for three complementary approaches that can be used to assess the intensity of oxidative stress. These involve quantification of marker transcripts, assays of the extractable activities of major antioxidative enzymes, and measurement of antioxidant buffers. We confirm experimentally that the data obtained by such approaches can provide reliable information on the intensity of oxidative stress.
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Affiliation(s)
- Graham Noctor
- Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France.
- Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France.
- Institut Universitaire de France (IUF), Paris, France.
| | - Mathias Cohen
- Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
- Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium
- VIB Center of Plant Systems Biology, 9052 Ghent, Belgium, Ghent, Belgium
| | - Lug Trémulot
- Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
- Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium
- VIB Center of Plant Systems Biology, 9052 Ghent, Belgium, Ghent, Belgium
| | - Amna Mhamdi
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium
- VIB Center of Plant Systems Biology, 9052 Ghent, Belgium, Ghent, Belgium
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17
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Identification of a DEAD-box RNA Helicase BnRH6 Reveals Its Involvement in Salt Stress Response in Rapeseed ( Brassica napus). Int J Mol Sci 2022; 24:ijms24010002. [PMID: 36613447 PMCID: PMC9819673 DOI: 10.3390/ijms24010002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 12/14/2022] [Accepted: 12/16/2022] [Indexed: 12/24/2022] Open
Abstract
Rapeseed (Brassica napus) is one of the most important vegetable oil crops worldwide. Abiotic stresses such as salinity are great challenges for its growth and productivity. DEAD-box RNA helicase 6 (RH6) is a subfamily member of superfamily 2 (SF2), which plays crucial roles in plant growth and development. However, no report is available on RH6 in regulating plant abiotic stress response. This study investigated the function and regulatory mechanism for BnRH6. BnRH6 was targeted to the nucleus and cytoplasmic processing body (P-body), constitutively expressed throughout the lifespan, and induced by salt stress. Transgenic overexpressing BnRH6 in Brassica and Arabidopsis displayed salt hypersensitivity, manifested by lagging seed germination (decreased to 55−85% of wild-type), growth stunt, leaf chlorosis, oxidative stress, and over-accumulation of Na ions with the K+/Na+ ratio being decreased by 18.3−28.6%. Given the undesirable quality of knockout Brassica plants, we utilized an Arabidopsis T-DNA insertion mutant rh6-1 to investigate downstream genes by transcriptomics. We constructed four libraries with three biological replicates to investigate global downstream genes by RNA sequencing. Genome-wide analysis of differentially expressed genes (DEGs) (2-fold, p < 0.05) showed that 41 genes were upregulated and 66 genes were downregulated in rh6-1 relative to wild-type under salt stress. Most of them are well-identified and involved in transcription factors, ABA-responsive genes, and detoxified components or antioxidants. Our research suggests that BnRH6 can regulate a group of salt-tolerance genes to negatively promote Brassica adaptation to salt stress.
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18
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Araguirang GE, Richter AS. Activation of anthocyanin biosynthesis in high light - what is the initial signal? THE NEW PHYTOLOGIST 2022; 236:2037-2043. [PMID: 36110042 DOI: 10.1111/nph.18488] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 09/01/2022] [Indexed: 06/15/2023]
Abstract
Due to their sessile nature, plants cannot escape adverse environmental conditions and evolved mechanisms to cope with sudden environmental changes. The reaction to variations in abiotic factors, also summarized as acclimation response, affects all layers of cellular functions and involves rapid modification of enzymatic activities, the metabolome, proteome and transcriptome on different timescales. One trait of plants acclimating to high light (HL) is the rapid transcriptional activation of the flavonoid biosynthesis (FB) pathway resulting in the accumulation of photoprotective and antioxidative flavonoids, such as flavonols and anthocyanins, in the leaf tissue. Although enormous progress has been made in identifying enzymes and transcriptional regulators of FB by forward and reverse genetic approaches in the past, the signals and signalling pathways permitting the conditional activation of FB in HL are still debated. With this Tansley Insight, we summarize the current knowledge on the proposed signals and downstream factors involved in regulating FB and will discuss their contribution to, particularly, HL-induced accumulation of anthocyanins.
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Affiliation(s)
- Galileo Estopare Araguirang
- Physiology of Plant Metabolism, Institute for Biosciences, University of Rostock, Albert-Einstein-Strasse 3, 18059, Rostock, Germany
| | - Andreas S Richter
- Physiology of Plant Metabolism, Institute for Biosciences, University of Rostock, Albert-Einstein-Strasse 3, 18059, Rostock, Germany
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19
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Genome Wide Analysis of Family-1 UDP Glycosyltransferases in Populus trichocarpa Specifies Abiotic Stress Responsive Glycosylation Mechanisms. Genes (Basel) 2022; 13:genes13091640. [PMID: 36140806 PMCID: PMC9498546 DOI: 10.3390/genes13091640] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 08/22/2022] [Accepted: 08/25/2022] [Indexed: 11/21/2022] Open
Abstract
Populus trichocarpa (Black cottonwood) is a dominant timber-yielding tree that has become a notable model plant for genome-level insights in forest trees. The efficient transport and solubility of various glycoside-associated compounds is linked to Family-1 UDP-glycosyltransferase (EC 2.4.1.x; UGTs) enzymes. These glycosyltransferase enzymes play a vital role in diverse plant functions, such as regulation of hormonal homeostasis, growth and development (seed, flower, fiber, root, etc.), xenobiotic detoxification, stress response (salt, drought, and oxidative), and biosynthesis of secondary metabolites. Here, we report a genome-wide analysis of the P. trichocarpa genome that identified 191 putative UGTs distributed across all chromosomes (with the exception of chromosome 20) based on 44 conserved plant secondary product glycosyltransferase (PSPG) motif amino acid sequences. Phylogenetic analysis of the 191 Populus UGTs together with 22 referenced UGTs from Arabidopsis and maize clustered the putative UGTs into 16 major groups (A–P). Whole-genome duplication events were the dominant pattern of duplication among UGTs in Populus. A well-conserved intron insertion was detected in most intron-containing UGTs across eight examined eudicots, including Populus. Most of the UGT genes were found preferentially expressed in leaf and root tissues in general. The regulation of putative UGT expression in response to drought, salt and heat stress was observed based on microarray and available RNA sequencing datasets. Up- and down-regulated UGT expression models were designed, based on transcripts per kilobase million values, confirmed their maximally varied expression under drought, salt and heat stresses. Co-expression networking of putative UGTs indicated their maximum co-expression with cytochrome P450 genes involved in triterpenoid biosynthesis. Our results provide an important resource for the identification of functional UGT genes to manipulate abiotic stress responsive glycosylation in Populus.
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20
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Bychkov IA, Andreeva AA, Kudryakova NV, Pojidaeva ES, Kusnetsov VV. The role of PAP4/FSD3 and PAP9/FSD2 in heat stress responses of chloroplast genes. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 322:111359. [PMID: 35738478 DOI: 10.1016/j.plantsci.2022.111359] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 06/01/2022] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
Abstract
Chloroplasts' mechanisms of adaptation to elevated temperatures are largely determined by the gene expression of the plastid transcription apparatus. Gene disruption of iron-containing superoxide dismutase PAP4/FSD3 and PAP9/FSD2, which are parts of the DNA-RNA polymerase complex of plastids, contributed to a decrease in resistance to oxidative stress caused by the prolonged action of elevated temperatures (5 days, 30 °C). Under heat stress conditions, pap4/fsd3 and pap9/fsd2 mutants showed a decline in chlorophyll content and photosynthesis level, as measured by photosynthetic parameters, and a different amplitude of HSP gene response to heat stress. The expression of nuclear- and plastid-encoded photosynthesis genes and corresponding proteins was strongly inhibited in the mutants as compared with wild-type plants and was further suppressed or displayed no additional changes at 30 °C. NEP-dependent plastid genes, as well as NEP genes RPOTp and RPOTmp, were also downregulated in the mutants by high temperature or remained stable, unlike in wild-type seedlings where these genes were strongly upregulated. The results obtained correspond to the concept of the complex effect of various forms of reactive oxygen species under all types of stresses, including heat stress, and confirm the hypothesis of a new regulatory function in plastid transcription acquired by enzymatic proteins during evolution.
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Affiliation(s)
- Ivan A Bychkov
- К.А. Timiryazev Institute of Plant Physiology RAS, 35 Botanicheskaya St., Moscow 127276, Russia
| | - Aleksandra A Andreeva
- К.А. Timiryazev Institute of Plant Physiology RAS, 35 Botanicheskaya St., Moscow 127276, Russia
| | - Natalia V Kudryakova
- К.А. Timiryazev Institute of Plant Physiology RAS, 35 Botanicheskaya St., Moscow 127276, Russia.
| | - Elena S Pojidaeva
- К.А. Timiryazev Institute of Plant Physiology RAS, 35 Botanicheskaya St., Moscow 127276, Russia
| | - Victor V Kusnetsov
- К.А. Timiryazev Institute of Plant Physiology RAS, 35 Botanicheskaya St., Moscow 127276, Russia
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21
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Perfluorobutanoic Acid (PFBA) Induces a Non-Enzymatic Oxidative Stress Response in Soybean (Glycine max L. Merr.). Int J Mol Sci 2022; 23:ijms23179934. [PMID: 36077331 PMCID: PMC9456126 DOI: 10.3390/ijms23179934] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 08/24/2022] [Accepted: 08/27/2022] [Indexed: 11/20/2022] Open
Abstract
Short-chain perfluoroalkyl substances (PFAS) are generally considered to be of less environmental concern than long-chain analogues due to their comparatively shorter half-lives in biological systems. Perfluorobutanoic acid (PFBA) is a short-chain PFAS with the most root–shoot transfer factor of all PFAS. We investigated the impact of extended exposure of soybean plants to irrigation water containing environmentally relevant (100 pg–100 ng/L) to high (100 µg–1 mg/L) concentrations of PFBA using phenotypical observation, biochemical characterization, and transcriptomic analysis. The results showed a non-monotonous developmental response from the plants, with maximum stimulation and inhibition at 100 ng/L and 1 mg/L, respectively. Higher reactive oxygen species and low levels of superoxide dismutase (SOD) and catalase (CAT) activity were observed in all treatment groups. However transcriptomic analysis did not demonstrate differential expression of SOD and CAT coding genes, whereas non-enzymatic response genes and pathways were enriched in both groups (100 ng/L and 1 mg/L) with glycine betaine dehydrogenase showing the highest expression. About 18% of similarly downregulated genes in both groups are involved in the ethylene signaling pathway. The circadian rhythm pathway was the only differentially regulated pathway between both groups. We conclude that, similar to long chain PFAS, PFBA induced stress in soybean plants and that the observed hormetic stimulation at 100 ng/L represents an overcompensation response, via the circadian rhythm pathway, to the induced stress.
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22
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Terrón-Camero LC, Peláez-Vico MÁ, Rodríguez-González A, del Val C, Sandalio LM, Romero-Puertas MC. Gene network downstream plant stress response modulated by peroxisomal H 2O 2. FRONTIERS IN PLANT SCIENCE 2022; 13:930721. [PMID: 36082297 PMCID: PMC9445673 DOI: 10.3389/fpls.2022.930721] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
Reactive oxygen species (ROS) act as secondary messengers that can be sensed by specific redox-sensitive proteins responsible for the activation of signal transduction culminating in altered gene expression. The subcellular site, in which modifications in the ROS/oxidation state occur, can also act as a specific cellular redox network signal. The chemical identity of ROS and their subcellular origin is actually a specific imprint on the transcriptome response. In recent years, a number of transcriptomic studies related to altered ROS metabolism in plant peroxisomes have been carried out. In this study, we conducted a meta-analysis of these transcriptomic findings to identify common transcriptional footprints for plant peroxisomal-dependent signaling at early and later time points. These footprints highlight the regulation of various metabolic pathways and gene families, which are also found in plant responses to several abiotic stresses. Major peroxisomal-dependent genes are associated with protein and endoplasmic reticulum (ER) protection at later stages of stress while, at earlier stages, these genes are related to hormone biosynthesis and signaling regulation. Furthermore, in silico analyses allowed us to assign human orthologs to some of the peroxisomal-dependent proteins, which are mainly associated with different cancer pathologies. Peroxisomal footprints provide a valuable resource for assessing and supporting key peroxisomal functions in cellular metabolism under control and stress conditions across species.
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Affiliation(s)
- Laura C. Terrón-Camero
- Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain
| | - M. Ángeles Peláez-Vico
- Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain
| | - A. Rodríguez-González
- Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain
| | - Coral del Val
- Department of Artificial Intelligence, University of Granada, Granada, Spain
- Andalusian Data Science and Computational Intelligence (DaSCI) Research Institute, University of Granada, Granada, Spain
| | - Luisa M. Sandalio
- Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain
| | - María C. Romero-Puertas
- Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain
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23
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Genetic Manipulation of Reactive Oxygen Species (ROS) Homeostasis Utilizing CRISPR/Cas9-Based Gene Editing in Rice. METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 2022; 2526:25-41. [PMID: 35657510 DOI: 10.1007/978-1-0716-2469-2_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Reactive oxygen species (ROS) are now recognized as key signals in plant stress responses. Adverse environmental conditions can either promote ROS production or downregulate antioxidative enzymes, leading to the alteration of redox homeostasis and activation of ROS-linked stress signaling. To uncover their signaling mechanisms and to characterize related components, genetic modification of ROS homeostasis is a central approach. CRISPR/Cas9-based genome editing system has become a powerful tool for gene mutation in a variety of organisms, including plants. Within this chapter, we describe a method that can be applied to manipulate ROS homeostasis in rice (Oryza sativa L.) utilizing CRISPR/Cas9 technology. Step-by-step protocols including the design and construction of Cas9/sgRNA, agrobacterium-mediated transformation, and mutation characterization are described. Application of this system in editing a rice catalase gene CatC, a key antioxidative enzyme in controlling ROS homeostasis, is also presented.
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24
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Navazas A, Mesa V, Thijs S, Fuente-Maqueda F, Vangronsveld J, Peláez AI, Cuypers A, González A. Bacterial inoculant-assisted phytoremediation affects trace element uptake and metabolite content in Salix atrocinerea. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 820:153088. [PMID: 35063508 DOI: 10.1016/j.scitotenv.2022.153088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 12/23/2021] [Accepted: 01/09/2022] [Indexed: 06/14/2023]
Abstract
Natural plant-associated microorganisms are of critical importance to plant growth and survival in field conditions under toxic concentrations of trace elements (TE) and these plant-microbial processes can be harnessed to enhance phytoremediation. The total bacterial diversity from grey willow (Salix atrocinerea) on a brownfield heavily-polluted with lead (Pb) and arsenic (As) was studied through pyrosequencing. Culturable bacteria were isolated and in vitro tested for plant growth-promotion (PGP) traits, arsenic (As) tolerance and impact on As speciation. Two of the most promising bacterial strains - the root endophyte Pantoea sp. AV62 and the rhizospheric strain Rhodococcus erythropolis AV96 - were inoculated in field to S. atrocinerea. This bioaugmentation resulted in higher As and Pb concentrations in both, roots and leaves of bacterial-inoculated plants as compared to non-inoculated plants. In consequence, bacterial bioaugmentation also affected parameters related to plant growth, oxidative stress, the levels of phytochelatins and phenylpropanoids, together with the differential expression of genes related to these tolerance mechanisms to TE in leaves. This study extends our understanding about plant-bacterial interactions and provides a solid basis for further bioaugmentation studies aiming to improve TE phytoremediation efficiency and predictability in the field.
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Affiliation(s)
- Alejandro Navazas
- Department of Organisms and Systems Biology, Area of Plant Physiology, University of Oviedo, Catedrático Rodrigo Uría s/n, 33006 Oviedo, Spain; Centre for Environmental Sciences, Hasselt University, Agoralaan Building D, B-3590 Diepenbeek, Belgium
| | - Victoria Mesa
- Faculty of Pharmacy, Université de Paris, UMR-S1139, F-75006 Paris, France
| | - Sofie Thijs
- Centre for Environmental Sciences, Hasselt University, Agoralaan Building D, B-3590 Diepenbeek, Belgium
| | | | - Jaco Vangronsveld
- Centre for Environmental Sciences, Hasselt University, Agoralaan Building D, B-3590 Diepenbeek, Belgium; Department of Plant Physiology and Biophysics, Institute of Biological Sciences, Faculty of Biology and Biotechnology, Maria Curie-Skłodowska University, Lublin, Poland
| | - Ana I Peláez
- Area of Microbiology, Department of Functional Biology and Environmental Biogeochemistry and Raw Materials Group, University of Oviedo, Oviedo, Spain; University Institute of Biotechnology of Asturias (IUBA), University of Oviedo, Oviedo, Spain
| | - Ann Cuypers
- Centre for Environmental Sciences, Hasselt University, Agoralaan Building D, B-3590 Diepenbeek, Belgium
| | - Aida González
- Department of Organisms and Systems Biology, Area of Plant Physiology, University of Oviedo, Catedrático Rodrigo Uría s/n, 33006 Oviedo, Spain.
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25
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Yu Y, Zhang Q, Sun S, Yang J. Upregulated expression of RESPIRATORY BURST OXIDASE HOMOLOG D underlies lesion-mimic phenotype in dark-treated Arabidopsis pheide a oxygenase mutant leaves. PLANTA 2022; 255:110. [PMID: 35471712 DOI: 10.1007/s00425-022-03895-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Accepted: 04/05/2022] [Indexed: 06/14/2023]
Abstract
Upregulated expression of RESPIRATORY BURST OXIDASE HOMOLOG D (RBOHD) encoding a plasma membrane NADPH oxidase is responsible for the lesion-mimic phenotype in detached Arabidopsis leaves with mutation of PHEIDE a OXYGENASE during extended darkness. Chlorophyll degradation is an indispensable process in leaf senescence, either age-dependent or dark-induced. Besides higher chlorophyll retention, a lesion-mimic phenotype (abbreviated as LMP afterwards) was exhibited in Arabidopsis leaves with mutation of PHEIDE a OXYGENASE (PaO) involved in chlorophyll degradation during dark incubation, but the associated mechanism remains elusive. We found that dark-treated pao leaves showed higher membrane damage and H2O2 accumulation, while scavenging H2O2 by its chemical scavenger diminished LMP. RBOHD which encodes NADPH oxidase was strikingly up-regulated in pao leaves during dark treatment. Chemical inhibition of NADPH oxidase or mutation of RBOHD in pao leaves suppressed LMP. Thus, our study suggests that up-regulated RBOHD transcription is responsible for the formation of LMP in dark-treated pao leaves and there may be a retrograde signaling pathway mediating upregulation of RBOHD which remains to be elucidated.
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Affiliation(s)
- Yongfan Yu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China
| | - Qiang Zhang
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China
| | - Sujing Sun
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China
| | - Jiading Yang
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China.
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26
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Al‐Hajaya Y, Karpinska B, Foyer CH, Baker A. Nuclear and peroxisomal targeting of catalase. PLANT, CELL & ENVIRONMENT 2022; 45:1096-1108. [PMID: 35040158 PMCID: PMC9305541 DOI: 10.1111/pce.14262] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 11/16/2021] [Accepted: 11/18/2021] [Indexed: 06/14/2023]
Abstract
Catalase is a well-known component of the cellular antioxidant network, but there have been conflicting conclusions reached regarding the nature of its peroxisome targeting signal. It has also been reported that catalase can be hijacked to the nucleus by effector proteins of plant pathogens. Using a physiologically relevant system where native untagged catalase variants are expressed in a cat2-1 mutant background, the C terminal most 18 amino acids could be deleted without affecting activity, peroxisomal targeting or ability to complement multiple phenotypes of the cat2-1 mutant. In contrast, converting the native C terminal tripeptide PSI to the canonical PTS1 sequence ARL resulted in lower catalase specific activity. Localisation experiments using split superfolder green fluorescent protein revealed that catalase can be targeted to the nucleus in the absence of any pathogen effectors, and that C terminal tagging in combination with alterations of the native C terminus can interfere with nuclear localisation. These findings provide fundamental new insights into catalase targeting and pave the way for exploration of the mechanism of catalase targeting to the nucleus and its role in non-infected plants.
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Affiliation(s)
- Yousef Al‐Hajaya
- Centre for Plant Sciences and School of Molecular and Cellular BiologyUniversity of LeedsLeedsUK
- Present address:
Department of Laboratory Medical SciencesMutah UniversityKarakJordan
| | - Barbara Karpinska
- Centre for Plant Sciences and School of BiologyUniversity of LeedsLeedsUK
| | - Christine H. Foyer
- Centre for Plant Sciences and School of BiologyUniversity of LeedsLeedsUK
- Present address:
School of Biosciences, College of Life and Environmental SciencesUniversity of BirminghamEdgbastonUK
| | - Alison Baker
- Centre for Plant Sciences and School of Molecular and Cellular BiologyUniversity of LeedsLeedsUK
- Astbury Centre for Structural Molecular BiologyUniversity of LeedsLeedsUK
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27
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Janzen GM, Aguilar‐Rangel MR, Cíntora‐Martínez C, Blöcher‐Juárez KA, González‐Segovia E, Studer AJ, Runcie DE, Flint‐Garcia SA, Rellán‐Álvarez R, Sawers RJH, Hufford MB. Demonstration of local adaptation in maize landraces by reciprocal transplantation. Evol Appl 2022; 15:817-837. [PMID: 35603032 PMCID: PMC9108319 DOI: 10.1111/eva.13372] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 01/24/2022] [Accepted: 01/31/2022] [Indexed: 11/28/2022] Open
Abstract
Populations are locally adapted when they exhibit higher fitness than foreign populations in their native habitat. Maize landrace adaptations to highland and lowland conditions are of interest to researchers and breeders. To determine the prevalence and strength of local adaptation in maize landraces, we performed a reciprocal transplant experiment across an elevational gradient in Mexico. We grew 120 landraces, grouped into four populations (Mexican Highland, Mexican Lowland, South American Highland, South American Lowland), in Mexican highland and lowland common gardens and collected phenotypes relevant to fitness and known highland‐adaptive traits such as anthocyanin pigmentation and macrohair density. 67k DArTseq markers were generated from field specimens to allow comparisons between phenotypic patterns and population genetic structure. We found phenotypic patterns consistent with local adaptation, though these patterns differ between the Mexican and South American populations. Quantitative trait differentiation (QST) was greater than neutral allele frequency differentiation (FST) for many traits, signaling directional selection between pairs of populations. All populations exhibited higher fitness metric values when grown at their native elevation, and Mexican landraces had higher fitness than South American landraces when grown in these Mexican sites. As environmental distance between landraces’ native collection sites and common garden sites increased, fitness values dropped, suggesting landraces are adapted to environmental conditions at their natal sites. Correlations between fitness and anthocyanin pigmentation and macrohair traits were stronger in the highland site than the lowland site, supporting their status as highland‐adaptive. These results give substance to the long‐held presumption of local adaptation of New World maize landraces to elevation and other environmental variables across North and South America.
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Affiliation(s)
- Garrett M. Janzen
- Department of Ecology, Evolution, and Organismal Biology Iowa State University Ames Iowa USA 50011
- Department of Plant Biology University of Georgia Athens Georgia USA 30602
| | | | | | | | - Eric González‐Segovia
- Langebio, Cinvestav, Km 9.6 Libramiento Norte Carretera Len Irapuato, Guanajuato Mexico 36821
| | - Anthony J. Studer
- Department of Crop Sciences University of Illinois Urbana‐Champaign 1201 West Gregory Drive Urbana Illinois USA 61801
| | - Daniel E. Runcie
- Department of Plant Sciences University of California‐Davis 278 Robbins Berkeley California USA 95616
| | - Sherry A. Flint‐Garcia
- Agricultural Research Service United States Department of Agriculture Columbia Missouri 65211 USA
- University of Missouri 301 Curtis Hall Columbia Missouri USA 65211
| | - Rubén Rellán‐Álvarez
- Langebio, Cinvestav, Km 9.6 Libramiento Norte Carretera Len Irapuato, Guanajuato Mexico 36821
- Present address: Molecular and Structural Biochemistry North Carolina State University 128 Polk Hall Raleigh North Carolina USA 27695‐7622
| | - Ruairidh J. H. Sawers
- Langebio, Cinvestav, Km 9.6 Libramiento Norte Carretera Len Irapuato, Guanajuato Mexico 36821
- Department of Plant Science Pennsylvania State University University Park Pennsylvania USA 16802
| | - Matthew B. Hufford
- Department of Ecology, Evolution, and Organismal Biology Iowa State University Ames Iowa USA 50011
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28
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Regon P, Dey S, Rehman M, Pradhan AK, Chowra U, Tanti B, Talukdar AD, Panda SK. Transcriptomic Analysis Revealed Reactive Oxygen Species Scavenging Mechanisms Associated With Ferrous Iron Toxicity in Aromatic Keteki Joha Rice. FRONTIERS IN PLANT SCIENCE 2022; 13:798580. [PMID: 35283928 PMCID: PMC8913046 DOI: 10.3389/fpls.2022.798580] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
Lowland acidic soils with water-logged regions are often affected by ferrous iron (Fe2+) toxicity, a major yield-limiting factor of rice production. Under severe Fe2+ toxicity, reactive oxygen species (ROS) are crucial, although molecular mechanisms and associated ROS homeostasis genes are still unknown. In this study, a comparative RNA-Seq based transcriptome analysis was conducted to understand the Fe2+ toxicity tolerance mechanism in aromatic Keteki Joha. About 69 Fe homeostasis related genes and their homologs were identified, where most of the genes were downregulated. Under severe Fe2+ toxicity, the biosynthesis of amino acids, RNA degradation, and glutathione metabolism were induced, whereas phenylpropanoid biosynthesis, photosynthesis, and fatty acid elongation were inhibited. The mitochondrial iron transporter (OsMIT), vacuolar iron transporter 2 (OsVIT2), ferritin (OsFER), vacuolar mugineic acid transporter (OsVMT), phenolic efflux zero1 (OsPEZ1), root meander curling (OsRMC), and nicotianamine synthase (OsNAS3) were upregulated in different tissues, suggesting the importance of Fe retention and sequestration for detoxification. However, several antioxidants, ROS scavenging genes and abiotic stress-responsive transcription factors indicate ROS homeostasis as one of the most important defense mechanisms under severe Fe2+ toxicity. Catalase (CAT), glutathione (GSH), ascorbate peroxidase (APX), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR), and glutathione reductase (GR) were upregulated. Moreover, abiotic stress-responsive transcription factors, no apical meristem (NAC), myeloblastosis (MYB), auxin response factor (ARF), basic helix-loop-helix (bZIP), WRKY, and C2H2-zinc finger protein (C2H2-ZFP) were also upregulated. Accordingly, ROS homeostasis has been proposed as an essential defense mechanism under such conditions. Thus, the current study may enrich the understanding of Fe-homeostasis in rice.
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Affiliation(s)
- Preetom Regon
- Department of Life Science and Bioinformatics, Assam University, Silchar, India
- Plant Molecular Biology Laboratory, Department of Botany, Gauhati University, Guwahati, India
| | - Sangita Dey
- Department of Life Science and Bioinformatics, Assam University, Silchar, India
| | - Mehzabin Rehman
- Plant Molecular Biology Laboratory, Department of Botany, Gauhati University, Guwahati, India
| | - Amit Kumar Pradhan
- Plant Molecular Biology Laboratory, Department of Botany, Gauhati University, Guwahati, India
- Department of Botany, Pragjyotish College, Guwahati, India
| | | | - Bhaben Tanti
- Plant Molecular Biology Laboratory, Department of Botany, Gauhati University, Guwahati, India
| | - Anupam Das Talukdar
- Department of Life Science and Bioinformatics, Assam University, Silchar, India
| | - Sanjib Kumar Panda
- Department of Biochemistry, Central University of Rajasthan, Ajmer, India
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29
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Kashyap AS, Manzar N, Nebapure SM, Rajawat MVS, Deo MM, Singh JP, Kesharwani AK, Singh RP, Dubey SC, Singh D. Unraveling Microbial Volatile Elicitors Using a Transparent Methodology for Induction of Systemic Resistance and Regulation of Antioxidant Genes at Expression Levels in Chili against Bacterial Wilt Disease. Antioxidants (Basel) 2022; 11:antiox11020404. [PMID: 35204287 PMCID: PMC8869530 DOI: 10.3390/antiox11020404] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 02/05/2022] [Accepted: 02/09/2022] [Indexed: 12/10/2022] Open
Abstract
Microbial volatiles benefit the agricultural ecological system by promoting plant growth and systemic resistance against diseases without harming the environment. To explore the plant growth-promoting efficiency of VOCs produced by Pseudomonas fluorescens PDS1 and Bacillus subtilis KA9 in terms of chili plant growth and its biocontrol efficiency against Ralstonia solanacearum, experiments were conducted both in vitro and in vivo. A closure assembly was designed using a half-inverted plastic bottle to demonstrate plant–microbial interactions via volatile compounds. The most common volatile organic compounds were identified and reported; they promoted plant development and induced systemic resistance (ISR) against wilt pathogen R. solanacearum. The PDS1 and KA9 VOCs significantly increased defensive enzyme activity and overexpressed the antioxidant genes PAL, POD, SOD, WRKYa, PAL1, DEF-1, CAT-2, WRKY40, HSFC1, LOX2, and NPR1 related to plant defense. The overall gene expression was greater in root tissue as compared to leaf tissue in chili plant. Our findings shed light on the relationship among rhizobacteria, pathogen, and host plants, resulting in plant growth promotion, disease suppression, systemic resistance-inducing potential, and antioxidant response with related gene expression in the leaf and root tissue of chili.
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Affiliation(s)
- Abhijeet Shankar Kashyap
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.K.); (R.P.S.)
- Plant Pathology Laboratory, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (N.M.); (M.V.S.R.); (J.P.S.)
- Correspondence: (A.S.K.); (D.S.)
| | - Nazia Manzar
- Plant Pathology Laboratory, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (N.M.); (M.V.S.R.); (J.P.S.)
| | | | - Mahendra Vikram Singh Rajawat
- Plant Pathology Laboratory, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (N.M.); (M.V.S.R.); (J.P.S.)
| | - Man Mohan Deo
- Farm Machinery and Power, ICAR-Indian Institute of Pulses Research, Kanpur 208024, India;
| | - Jyoti Prakash Singh
- Plant Pathology Laboratory, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (N.M.); (M.V.S.R.); (J.P.S.)
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Amit Kumar Kesharwani
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.K.); (R.P.S.)
| | - Ravinder Pal Singh
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.K.); (R.P.S.)
| | - S. C. Dubey
- Division of Plant Quarantine, ICAR-NBPGR, New Delhi 110012, India;
- Krishi Bhawan, Indian Council of Agricultural Research, New Delhi 110001, India
| | - Dinesh Singh
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India; (A.K.K.); (R.P.S.)
- Correspondence: (A.S.K.); (D.S.)
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30
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Romero-Puertas MC, Peláez-Vico MÁ, Pazmiño DM, Rodríguez-Serrano M, Terrón-Camero L, Bautista R, Gómez-Cadenas A, Claros MG, León J, Sandalio LM. Insights into ROS-dependent signalling underlying transcriptomic plant responses to the herbicide 2,4-D. PLANT, CELL & ENVIRONMENT 2022; 45:572-590. [PMID: 34800292 DOI: 10.1111/pce.14229] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 10/28/2021] [Accepted: 10/29/2021] [Indexed: 06/13/2023]
Abstract
The synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D) functions as an agronomic weed control herbicide. High concentrations of 2,4-D induce plant growth defects, particularly leaf epinasty and stem curvature. Although the 2,4-D triggered reactive oxygen species (ROS) production, little is known about its signalling. In this study, by using a null mutant in peroxisomal acyl CoA oxidase 1 (acx1-2), we identified acyl-coenzyme A oxidase 1 (ACX1) as one of the main sources of ROS production and, in part, also causing the epinastic phenotype following 2,4-D application. Transcriptomic analyses of wild type (WT) plants after treatment with 2,4-D revealed a ROS-related peroxisomal footprint in early plant responses, while other organelles, such as mitochondria and chloroplasts, are involved in later responses. Interestingly, a group of 2,4-D-responsive ACX1-dependent transcripts previously associated with epinasty is related to auxin biosynthesis, metabolism, and signalling. We found that the auxin receptor auxin signalling F-box 3 (AFB3), a component of Skp, Cullin, F-box containing complex (SCF) (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which mediates auxin/indole acetic acid (AUX/IAA) degradation by the 26S proteasome, acts downstream of ACX1 and is involved in the epinastic phenotype induced by 2,4-D. We also found that protein degradation associated with ubiquitin E3-RING and E3-SCF-FBOX in ACX1-dependent signalling in plant responses to 2,4-D is significantly regulated over longer treatment periods.
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Affiliation(s)
- María C Romero-Puertas
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, EEZ, CSIC, Granada, Spain
| | | | - Diana M Pazmiño
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, EEZ, CSIC, Granada, Spain
| | - María Rodríguez-Serrano
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, EEZ, CSIC, Granada, Spain
| | | | - Rocío Bautista
- Plataforma Andaluza de Bioinformática-SCBI, Universidad de Málaga, Málaga, Spain
| | - Aurelio Gómez-Cadenas
- Department Ciències Agràries i del Medi Natural, Universitat Jaume I, Castelló de la Plana, Spain
| | - M Gonzalo Claros
- Plataforma Andaluza de Bioinformática-SCBI, Universidad de Málaga, Málaga, Spain
- Departamento de Biología Molecular y Bioquímica, Ciencias, Univ. de Málaga, Málaga, Spain
- Institute for Mediterranean and Subtropical Horticulture "La Mayora" (IHSM-UMA-CSIC), Málaga, Spain
| | - José León
- Instituto de Biología Molecular y Celular de Plantas (CSIC-Univ. Valencia), CPI Edificio 8E, Valencia, Spain
| | - Luisa M Sandalio
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, EEZ, CSIC, Granada, Spain
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Shim E, Lee JW, Park H, Zuccarello GC, Kim GH. Hydrogen peroxide signalling mediates fertilization and post-fertilization development in the red alga Bostrychia moritziana. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:727-741. [PMID: 34652437 DOI: 10.1093/jxb/erab453] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 10/14/2021] [Indexed: 06/13/2023]
Abstract
Reactive oxygen species (ROS) signalling has a multitude of roles in cellular processes throughout biology. We hypothesized that red algal fertilization may offer an interesting model to study ROS-mediated signalling, as the stages of fertilization are complex and unique. We detected the localization of ROS production microscopically and monitored the expression of three homologues of NADPH oxidase in reproductive cells during fertilization. ROS were instantaneously produced by spermatia (sperm) when they attached to female trichogynes, diffused across the cell membrane in the form of H2O2, and triggered ROS generation in the carpogonium (egg) as well as carpogonial branch cells which are not in direct contact with spermatia. The expression of NADPH oxidase homologues, RESPIRATORY BURST OXIDASE HOMOLOGUES (BmRBOHs), began to be up-regulated in the female plant upon gamete binding, peaking during the fertilization process and descending back to their original level after fertilization. Pre-treatment with diphenylene iodonium or caffeine blocked gene expression as well as H2O2 production. Post-fertilization development was also inhibited when the redox state of the plants was perturbed with H2O2 at any time before or after the fertilization. Our results suggest that H2O2 acts as an auto-propagating signalling molecule, possibly through Ca2+ channel activation, and regulates gene expression in fertilization as well as post-fertilization development in red algae.
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Affiliation(s)
- Eunyoung Shim
- Department of Biological Sciences, Kongju National University, Gongju 32588, Korea
| | - Ji Woong Lee
- Department of Biological Sciences, Kongju National University, Gongju 32588, Korea
| | - Hana Park
- Department of Biological Sciences, Kongju National University, Gongju 32588, Korea
| | - Giuseppe C Zuccarello
- School of Biological Sciences, Victoria University of Wellington, P.O. Box 600, Wellington 6140, New Zealand
| | - Gwang Hoon Kim
- Department of Biological Sciences, Kongju National University, Gongju 32588, Korea
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Lima-Melo Y, Kılıç M, Aro EM, Gollan PJ. Photosystem I Inhibition, Protection and Signalling: Knowns and Unknowns. FRONTIERS IN PLANT SCIENCE 2021; 12:791124. [PMID: 34925429 PMCID: PMC8671627 DOI: 10.3389/fpls.2021.791124] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 11/11/2021] [Indexed: 05/22/2023]
Abstract
Photosynthesis is the process that harnesses, converts and stores light energy in the form of chemical energy in bonds of organic compounds. Oxygenic photosynthetic organisms (i.e., plants, algae and cyanobacteria) employ an efficient apparatus to split water and transport electrons to high-energy electron acceptors. The photosynthetic system must be finely balanced between energy harvesting and energy utilisation, in order to limit generation of dangerous compounds that can damage the integrity of cells. Insight into how the photosynthetic components are protected, regulated, damaged, and repaired during changing environmental conditions is crucial for improving photosynthetic efficiency in crop species. Photosystem I (PSI) is an integral component of the photosynthetic system located at the juncture between energy-harnessing and energy consumption through metabolism. Although the main site of photoinhibition is the photosystem II (PSII), PSI is also known to be inactivated by photosynthetic energy imbalance, with slower reactivation compared to PSII; however, several outstanding questions remain about the mechanisms of damage and repair, and about the impact of PSI photoinhibition on signalling and metabolism. In this review, we address the knowns and unknowns about PSI activity, inhibition, protection, and repair in plants. We also discuss the role of PSI in retrograde signalling pathways and highlight putative signals triggered by the functional status of the PSI pool.
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Affiliation(s)
- Yugo Lima-Melo
- Post-graduation Programme in Cellular and Molecular Biology (PPGBCM), Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | - Mehmet Kılıç
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
| | - Eva-Mari Aro
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
| | - Peter J. Gollan
- Molecular Plant Biology, Department of Life Technologies, University of Turku, Turku, Finland
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33
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Ferreyra MLF, Serra P, Casati P. Recent advances on the roles of flavonoids as plant protective molecules after UV and high light exposure. PHYSIOLOGIA PLANTARUM 2021; 173:736-749. [PMID: 34453749 DOI: 10.1111/ppl.13543] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 08/16/2021] [Accepted: 08/25/2021] [Indexed: 05/25/2023]
Abstract
Flavonoids are plant specialized metabolites that consist of one oxygenated and two aromatic rings. Different flavonoids are grouped according to the oxidation degree of the carbon rings; they can later be modified by glycosylations, hydroxylations, acylations, methylations, or prenylations. These modifications generate a wide collection of different molecules which have various functions in plants. All flavonoids absorb in the UV wavelengths, they mostly accumulate in the epidermis of plant cells and their biosynthesis is generally activated after UV exposure. Therefore, they have been assumed to protect plants against exposure to radiation in this range. Some flavonoids also absorb in other wavelengths, for example anthocyanins, which absorb light in the visible part of the solar spectrum. Besides, some flavonoids show antioxidant properties, that is, they act as scavengers of reactive oxygen species that could be produced after high fluence UV exposure. However, to date most reports were based on in vitro studies, and there is very little in vivo evidence of how their roles are carried out. In this review we first summarize the biosynthetic pathway of flavonoids and their characteristics, and we describe recent advances on the investigation of the role of three of the most abundant flavonoids: flavonols, flavones, and anthocyanins, protecting plants against UV exposure and high light exposure. We also present examples of how using UV-B supplementation to increase flavonoid content, is possible to improve plant nutritional and pharmaceutical values.
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Affiliation(s)
- María Lorena Falcone Ferreyra
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Paloma Serra
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Paula Casati
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
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Sako K, Nagashima R, Tamoi M, Seki M. Exogenous ethanol treatment alleviates oxidative damage of Arabidopsis thaliana under conditions of high-light stress. PLANT BIOTECHNOLOGY (TOKYO, JAPAN) 2021; 38:339-344. [PMID: 34782821 PMCID: PMC8562572 DOI: 10.5511/plantbiotechnology.21.0715a] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Accepted: 07/15/2021] [Indexed: 05/31/2023]
Abstract
Abiotic stresses, such as high light and salinity, are major factors that limit crop productivity and sustainability worldwide. Chemical priming is a promising strategy for improving the abiotic stress tolerance of plants. Recently, we discovered that ethanol enhances high-salinity stress tolerance in Arabidopsis thaliana and rice by detoxifying reactive oxygen species (ROS). However, the effect of ethanol on other abiotic stress responses is unclear. Therefore, we investigated the effect of ethanol on the high-light stress response. Measurement of chlorophyll fluorescence showed that ethanol mitigates photoinhibition under high-light stress. Staining with 3,3'-diaminobenzidine (DAB) showed that the accumulation of hydrogen peroxide (H2O2) was inhibited by ethanol under high-light stress conditions in A. thaliana. We found that ethanol increased the gene expressions and enzymatic activities of antioxidative enzymes, including ASCORBATE PEROXIDASE1 (AtAPX1), Catalase (AtCAT1 and AtCAT2). Moreover, the expression of flavonoid biosynthetic genes and anthocyanin contents were upregulated by ethanol treatment during exposure to high-light stress. These results imply that ethanol alleviates oxidative damage from high-light stress in A. thaliana by suppressing ROS accumulation. Our findings support the hypothesis that ethanol improves tolerance to multiple stresses in field-grown crops.
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Affiliation(s)
- Kaori Sako
- Department of Advanced Bioscience, Faculty of Agriculture, Kindai University, Nara, Nara 631-8505, Japan
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science (CSRS), Yokohama, Kanagawa 230-0045, Japan
| | - Ryutaro Nagashima
- Department of Advanced Bioscience, Faculty of Agriculture, Kindai University, Nara, Nara 631-8505, Japan
| | - Masahiro Tamoi
- Department of Advanced Bioscience, Faculty of Agriculture, Kindai University, Nara, Nara 631-8505, Japan
| | - Motoaki Seki
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science (CSRS), Yokohama, Kanagawa 230-0045, Japan
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Kanagawa 244-0813, Japan
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
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Pervaiz T, Liu SW, Uddin S, Amjid MW, Niu SH, Wu HX. The Transcriptional Landscape and Hub Genes Associated with Physiological Responses to Drought Stress in Pinus tabuliformis. Int J Mol Sci 2021; 22:ijms22179604. [PMID: 34502511 PMCID: PMC8431770 DOI: 10.3390/ijms22179604] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 08/11/2021] [Accepted: 09/01/2021] [Indexed: 01/18/2023] Open
Abstract
Drought stress has an extensive impact on regulating various physiological, metabolic, and molecular responses. In the present study, the Pinus tabuliformis transcriptome was studied to evaluate the drought-responsive genes using RNA- Sequencing approache. The results depicted that photosynthetic rate and H2O conductance started to decline under drought but recovered 24 h after re-watering; however, the intercellular CO2 concentration (Ci) increased with the onset of drought. We identified 84 drought-responsive transcription factors, 62 protein kinases, 17 transcriptional regulators, and 10 network hub genes. Additionally, we observed the expression patterns of several important gene families, including 2192 genes positively expressed in all 48 samples, and 40 genes were commonly co-expressed in all drought and recovery stages compared with the control samples. The drought-responsive transcriptome was conserved mainly between P. tabuliformis and A. thaliana, as 70% (6163) genes had a homologous in arabidopsis, out of which 52% homologous (3178 genes corresponding to 2086 genes in Arabidopsis) were also drought response genes in arabidopsis. The collaborative network exhibited 10 core hub genes integrating with ABA-dependent and independent pathways closely conserved with the ABA signaling pathway in the transcription factors module. PtNCED3 from the ABA family genes had shown significantly different expression patterns under control, mild, prolonged drought, and recovery stages. We found the expression pattern was considerably increased with the prolonged drought condition. PtNCED3 highly expressed in all drought-tested samples; more interestingly, expression pattern was higher under mild and prolonged drought. PtNCED3 is reported as one of the important regulating enzymes in ABA synthesis. The continuous accumulation of ABA in leaves increased resistance against drought was due to accumulation of PtNCED3 under drought stress in the pine needles.
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Affiliation(s)
- Tariq Pervaiz
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
| | - Shuang-Wei Liu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
| | - Saleem Uddin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
| | - Muhammad Waqas Amjid
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing 210095, China;
| | - Shi-Hui Niu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
- Correspondence: (S.-H.N.); (H.X.W.)
| | - Harry X. Wu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
- Umea Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Linnaeus vag 6, SE-901 83 Umea, Sweden
- CSIRO National Research Collection Australia, Black Mountain Laboratory, Canberra, ACT 2601, Australia
- Correspondence: (S.-H.N.); (H.X.W.)
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Yu ZC, Zheng XT, Lin W, He W, Shao L, Peng CL. Photoprotection of Arabidopsis leaves under short-term high light treatment: The antioxidant capacity is more important than the anthocyanin shielding effect. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 166:258-269. [PMID: 34126593 DOI: 10.1016/j.plaphy.2021.06.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 06/04/2021] [Indexed: 06/12/2023]
Abstract
Photoprotection strategies that have evolved in plants to cope with high light (HL) stress provide plants with the ability to resist HL. However, it has not been clearly confirmed which photoprotection strategy is the major HL resistance mechanism. To reveal the major photoprotection mechanism against short-term high light (STHL), the physiological and biochemical responses of three Arabidopsis mutants (Col, chi and ans) under STHL were analyzed in this study. After STHL treatment, the most serious photosynthetic pigment damage was observed in chi plants. At the same time, the degrees of membrane and Rubisco damage in chi was the highest, followed by Col, and ans was the smallest. The results showed that ans with high antioxidant capacity showed higher resistance to STHL treatment than Col containing anthocyanins, while chi with no anthocyanin accumulation and small antioxidant capacity had the lowest resistance. In addition, the gene expression results showed that plants tend to synthesize anthocyanin precursor flavonoids with antioxidant capacity under STHL stress. To further determine the major mechanism of photoprotection under STHL, we also analyzed Arabidopsis lines (Col, CHS1, CHS2 and tt4) that had the same anthocyanin content but different antioxidant capacities. It was found that CHS2 with high antioxidant capacity had higher cell viability, smaller maximal quantum yield of PSII photochemistry (Fv/Fm) reduction and less reactive oxygen species (ROS) accumulation under HL treatment of their mesophyll protoplasts. Therefore, the antioxidant capacity provided by antioxidant substances was the major mechanism of plant photoprotection under STHL treatment.
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Affiliation(s)
- Zheng-Chao Yu
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Xiao-Ting Zheng
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Wei Lin
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Wei He
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Ling Shao
- College of Life Science, Zhao Qing University, Zhaoqing, 526061, PR China
| | - Chang-Lian Peng
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China.
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37
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Yu ZC, Lin W, Zheng XT, Chow WS, Luo YN, Cai ML, Peng CL. The relationship between anthocyanin accumulation and photoprotection in young leaves of two dominant tree species in subtropical forests in different seasons. PHOTOSYNTHESIS RESEARCH 2021; 149:41-55. [PMID: 32902777 DOI: 10.1007/s11120-020-00781-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Accepted: 08/28/2020] [Indexed: 06/11/2023]
Abstract
Increasing amounts of experimental evidence show that anthocyanins provide physiological protection to plants under stress. However, the difference in photoprotection mediated by anthocyanins and other photoprotective substances in different seasons is still uncertain. To determine the relationship between anthocyanin accumulation and the photoprotective effects in different seasons, Castanopsis chinensis and Acmena acuminatissima, whose anthocyanin accumulation patterns differ in different seasons, were used as materials to explain how plants adapt to different seasons; as such, their physiological and biochemical responses were analyzed. Young leaves of C. chinensis and A. acuminatissima presented different colors in the different seasons. In summer, the young leaves of C. chinensis were purplish red, while those of A. acuminatissima were light green. In winter, the young leaves of C. chinensis were light green, while those of A. acuminatissima were red. Compared with the young red leaves, the young light green leaves that did not accumulate anthocyanins had higher flavonoid and phenolics contents, total antioxidant capacity, non-photochemical quenching (NPQ), and relative membrane leakage, and a slower recovery rate in the maximum photochemical efficiency (Fv/Fm) after high-light treatment. In addition, the net photosynthesis rate (Pn), transpiration rate (Tr), stomatal conductance (gs), and the effective quantum yield of PSII (ΦPSII) of the young leaves in winter were significantly lower than those in summer, while the activities of catalase (CAT, EC 1.11.1.6), peroxidase (POD, EC 1.11.1.7), and superoxide dismutase (SOD, EC 1.15.1.1) were significantly higher than those in summer. These data indicate that to adapt to seasonal changes anthocyanins, other antioxidative substances and antioxidative enzymes, as well as components involved in the safe dissipation of excitation energy as heat need to cooperate with one another.
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Affiliation(s)
- Zheng-Chao Yu
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Wei Lin
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Xiao-Ting Zheng
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Wah Soon Chow
- Division of Plant Sciences, Research School of Biology, College of Science, The Australian National University, Acton, ACT, 2601, Australia
| | - Yan-Na Luo
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Min-Ling Cai
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Chang-Lian Peng
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, PR China.
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Xue X, Duan Y, Wang J, Ma F, Li P. Nighttime Temperatures and Sunlight Intensities Interact to Influence Anthocyanin Biosynthesis and Photooxidative Sunburn in "Fuji" Apple. FRONTIERS IN PLANT SCIENCE 2021; 12:694954. [PMID: 34367217 PMCID: PMC8343144 DOI: 10.3389/fpls.2021.694954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 06/21/2021] [Indexed: 06/13/2023]
Abstract
Light and low temperatures induce anthocyanin accumulation, but intense sunlight causes photooxidative sunburn. Nonetheless, there have been few studies of anthocyanin synthesis under different sunlight intensities and low nighttime temperatures. Here, low nighttime temperatures followed by low light intensity were associated with greater anthocyanin accumulation and the expression of anthocyanin biosynthesis genes in "Fuji" apple peel. UDP-glucose flavonoid-3-O-glucosyltransferase (UFGT) activity was positively associated with anthocyanin enrichment. Ascorbic acid can be used as an electron donor of APX to scavenge H2O2 in plants, which makes it play an important role in oxidative defense. Exogenous ascorbate altered the anthocyanin accumulation and reduced the occurrence of high light-induced photooxidative sunburn by removing hydrogen peroxide from the peel. Overall, low light intensity was beneficial for the accumulation of anthocyanin and did not cause photooxidative sunburn, whereas natural light had the opposite effect on the apple peel at low nighttime temperatures. This study provides an insight into the mechanisms by which low temperatures induce apple coloration and high light intensity causes photooxidative sunburn.
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Affiliation(s)
- Xiaomin Xue
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
- Shandong Institute of Pomology, Tai’an, China
| | - Ying Duan
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | | | - Fengwang Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
| | - Pengmin Li
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Xianyang, China
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He H, Denecker J, Van Der Kelen K, Willems P, Pottie R, Phua SY, Hannah MA, Vertommen D, Van Breusegem F, Mhamdi A. The Arabidopsis mediator complex subunit 8 regulates oxidative stress responses. THE PLANT CELL 2021; 33:2032-2057. [PMID: 33713138 PMCID: PMC8290281 DOI: 10.1093/plcell/koab079] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 03/10/2021] [Indexed: 05/13/2023]
Abstract
Signaling events triggered by hydrogen peroxide (H2O2) regulate plant growth and defense by orchestrating a genome-wide transcriptional reprogramming. However, the specific mechanisms that govern H2O2-dependent gene expression are still poorly understood. Here, we identify the Arabidopsis Mediator complex subunit MED8 as a regulator of H2O2 responses. The introduction of the med8 mutation in a constitutive oxidative stress genetic background (catalase-deficient, cat2) was associated with enhanced activation of the salicylic acid pathway and accelerated cell death. Interestingly, med8 seedlings were more tolerant to oxidative stress generated by the herbicide methyl viologen (MV) and exhibited transcriptional hyperactivation of defense signaling, in particular salicylic acid- and jasmonic acid-related pathways. The med8-triggered tolerance to MV was manipulated by the introduction of secondary mutations in salicylic acid and jasmonic acid pathways. In addition, analysis of the Mediator interactome revealed interactions with components involved in mRNA processing and microRNA biogenesis, hence expanding the role of Mediator beyond transcription. Notably, MED8 interacted with the transcriptional regulator NEGATIVE ON TATA-LESS, NOT2, to control the expression of H2O2-inducible genes and stress responses. Our work establishes MED8 as a component regulating oxidative stress responses and demonstrates that it acts as a negative regulator of H2O2-driven activation of defense gene expression.
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Affiliation(s)
- Huaming He
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
| | - Jordi Denecker
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
- Present address: Illumina Cambridge Ltd, Cambridge, CB21 6DF, UK; Present address: Sciensano, 1050 Brussels, Belgium
| | - Katrien Van Der Kelen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
- Present address: Illumina Cambridge Ltd, Cambridge, CB21 6DF, UK; Present address: Sciensano, 1050 Brussels, Belgium
| | - Patrick Willems
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
| | - Robin Pottie
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
| | - Su Yin Phua
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
| | - Matthew A Hannah
- BASF Belgium Coordination Center, Innovation Center Gent, 9052 Gent, Belgium
| | - Didier Vertommen
- de Duve Institute, Université Catholique de Louvain, 1200 Brussels, Belgium
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
| | - Amna Mhamdi
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Gent, Belgium
- Author for correspondence: (A.M.)
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Zhou S, Yan X, Yang J, Qian C, Yin X, Fan X, Fang T, Gao Y, Chang Y, Liu W, Ma XF. Variations in Flavonoid Metabolites Along Altitudinal Gradient in a Desert Medicinal Plant Agriophyllum squarrosum. FRONTIERS IN PLANT SCIENCE 2021; 12:683265. [PMID: 34354722 PMCID: PMC8329721 DOI: 10.3389/fpls.2021.683265] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Accepted: 06/07/2021] [Indexed: 06/10/2023]
Abstract
Agriophyllum squarrosum (L.) Moq., a pioneer plant endemic to the temperate deserts of Asia, could be domesticated into an ideal crop with outstanding ecological and medicinal characteristics. A previous study showed differential flavonoid accumulation between two in situ altitudinal ecotypes. To verify whether this accumulation was determined by environmental or genetic factors, we conducted flavonoid-targeted metabolic profiling among 14 populations of A. squarrosum collected from regions with different altitudes based on a common garden experiment. Results showed that the most abundant flavonoid in A. squarrosum was isorhamnetin (48.40%, 557.45 μg/g), followed by quercetin (13.04%, 150.15 μg/g), tricin (11.17%, 128.70 μg/g), isoquercitrin (7.59%, 87.42 μg/g), isovitexin (7.20%, 82.94 μg/g), and rutin (7.00%, 80.62 μg/g). However, based on a common garden at middle-altitude environment, almost none of the flavonoids was enriched in the high-altitude populations, and even some flavonoids, such as quercetin, tricin, and rutin, were significantly enriched in low-altitude populations. This phenomenon indicated that the accumulation of flavonoids was not a result of local adaptation to high altitude. Furthermore, association analysis with in situ environmental variables showed that the contents of quercetin, tricin, and rutin were strongly positively correlated with latitude, longitude, and precipitation gradients and negatively correlated with temperature gradients. Thus, we could conclude that the accumulations of flavonoids in A. squarrosum were more likely as a result of local adaption to environmental heterogeneity combined with precipitation and temperature other than high altitude. This study not only provides an example to understand the molecular ecological basis of pharmacognosy, but also supplies methodologies for developing a new industrial crop with ecological and agricultural importance.
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Affiliation(s)
- Shanshan Zhou
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Xia Yan
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- School of Life Sciences, Nantong University, Nantong, China
| | - Jian Yang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Chaoju Qian
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Xiaoyue Yin
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Xingke Fan
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Tingzhou Fang
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Yuan Gao
- Faculty of Materials and Chemical Engineering, Yibin University, Yibin, China
| | - Yuxiao Chang
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Weimin Liu
- Zhongnong Haidao (Shenzhen) Biotech Co., Ltd., Shenzhen, China
| | - Xiao-Fei Ma
- Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions of Gansu Province, Department of Ecology and Agriculture Research, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- School of Life Sciences, Nantong University, Nantong, China
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Singh R, Misra AN, Sharma P. Effect of arsenate toxicity on antioxidant enzymes and expression of nicotianamine synthase in contrasting genotypes of bioenergy crop Ricinus communis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:31421-31430. [PMID: 33606168 DOI: 10.1007/s11356-021-12701-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2020] [Accepted: 01/25/2021] [Indexed: 06/12/2023]
Abstract
Arsenic (As) is a toxic environmental pollutant. Growing Ricinus communis (castor) on As-contaminated land has the advantage that in addition to revegetation of contaminated land, it can produce bioenergy. To date, As tolerance mechanisms of this plant are not fully understood. In our previous study, we screened tolerant and sensitive genotypes of castor and reported higher total As concentration, enhanced reactive oxygen species (ROS) generation, and oxidative stress in sensitive genotypes of castor GCH 2 and GCH 4 in comparison to tolerant genotypes WM and DCH 177. In the present study, we compared the activity, isoenzyme profile, and gene expression of ROS-scavenging enzymes, proline content, and expression of nicotianamine synthase genes (RcNAS1, RcNAS2, and RcNAS3) in As-tolerant and As-sensitive genotypes of castor. SOD and GPX activity increased significantly in roots of tolerant genotype WM but remained the same or decreased in sensitive genotype GCH 2 and GCH 4 at 200 μM arsenate [As(V)] treatment indicating their important role in As tolerance in castor. CAT activity and proline content increased in sensitive genotypes but remained the same in tolerant genotypes due to As(V) treatment. APX activity showed no significant change in roots and leaves of both tolerant and sensitive genotypes. NAS genes (RcNAS1, RcNAS2, and RcNAS3) encode enzymes that catalyze trimerization of S-adenosylmethionine to form nicotianamine and are critical for metal chelation and heavy metal tolerance. Differential responses of RcNAS1, RcNAS2, and RcNAS3 genes in WM and GCH 2 due to As(V) treatment suggest their role in As(V) tolerance.
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Affiliation(s)
- Rajani Singh
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, 835205, India
| | - Amarendra Narayan Misra
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, 835205, India
- Khallikote University, Berhampur, Odisha, 761008, India
| | - Pallavi Sharma
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, 835205, India.
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Escobar MR, Feussner I, Valle EM. Mitochondrial Small Heat Shock Proteins Are Essential for Normal Growth of Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2021; 12:600426. [PMID: 33643342 PMCID: PMC7902927 DOI: 10.3389/fpls.2021.600426] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 01/04/2021] [Indexed: 05/24/2023]
Abstract
Mitochondria play important roles in the plant stress responses and the detoxification of the reactive oxygen species generated in the electron transport chain. Expression of genes encoding stress-related proteins such as the mitochondrial small heat shock proteins (M-sHSP) is upregulated in response to different abiotic stresses. In Arabidopsis thaliana, three M-sHSPs paralogous genes were identified, although their function under physiological conditions remains elusive. The aim of this work is to uncover the in vivo function of all three M-sHSPs at the whole plant level. To accomplish this goal, we analyzed the phenotype, proteomic, and metabolic profiles of Arabidopsis knock-down lines of M-sHSPs (single, double, and triple knock-down lines) during normal plant growth. The triple knock-down plants showed the most prominent altered phenotype at vegetative and reproductive stages without any externally applied stress. They displayed chlorotic leaves, growth arrest, and low seed production. Concomitantly, they exhibited increased levels of sugars, proline, and citric, malic, and ascorbic acid, among other metabolites. In contrast, single and double knock-down plants displayed a few changes in their phenotype. A redundant function among the three M-sHSPs is indicated by the impairment in vegetative and reproductive growth associated with the simultaneous loss of all three M-sHSPs genes. The triple knock-down lines showed alteration of proteins mainly involved in photosynthesis and antioxidant defense compared to the control plants. On the other hand, heat stress triggered a distinct cytosolic response pattern and the upregulation of other sHSP members, in the knock-down plants. Overall, depletion of all three M-sHSPs in Arabidopsis severely impacted fundamental metabolic processes, leading to alterations in the correct plant growth and development. These findings expand our knowledge about the contribution of organelle-specific M-sHSPs to healthy plant growth under non-stress conditions.
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Affiliation(s)
- Mariela R. Escobar
- Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET-UNR), Rosario, Argentina
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen, Germany
| | - Estela M. Valle
- Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET-UNR), Rosario, Argentina
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Li Y, Zhang X, Cheng Q, Teixeira da Silva JA, Fang L, Ma G. Elicitors Modulate Young Sandalwood ( Santalum album L.) Growth, Heartwood Formation, and Concrete Oil Synthesis. PLANTS 2021; 10:plants10020339. [PMID: 33578821 PMCID: PMC7916594 DOI: 10.3390/plants10020339] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 02/04/2021] [Accepted: 02/05/2021] [Indexed: 01/30/2023]
Abstract
Five chemical elicitors––6-benzyladenine (BA), ethephon (ETH), methyl jasmonate (MeJA), hydrogen peroxide (H2O2) and calcium chloride (CaCl2)––were used to treat 1- and 5-year-old sandal trees (Santalum album L.) to assess their effects on growth, heartwood formation and concrete oil synthesis. The results showed that some newly formed branches in stems that were induced by BA and ETH displayed leaf senescence and developed new smaller and light-green leaves. The relative percentage of concrete oil from the heartwood of water-treated trees (0.65%) was significantly lower than that from trees treated with 4 mM H2O2 (2.85%) and 4 mM BA (2.75%) within one year. Four mM BA, H2O2 and CaCl2 induced a significantly higher level of sesquiterpenoids than heartwood treated with 2 mM of these elicitors. Four mM MeJA induced significantly less sesquiterpenoids than heartwood treated with 2 mM MeJA. Morphological, physiological, and chromatographic–spectrometric technologies were integrated to trace the potential function of these exogenously applied chemical elicitors. The results may have important applications and provide a better understanding of the molecular mechanism of heartwood formation and hardening in young sandalwood trees.
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Affiliation(s)
- Yuan Li
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (Y.L.); (X.Z.); (Q.C.); (L.F.)
| | - Xinhua Zhang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (Y.L.); (X.Z.); (Q.C.); (L.F.)
| | - Qingwei Cheng
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (Y.L.); (X.Z.); (Q.C.); (L.F.)
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Jaime A. Teixeira da Silva
- Independent Researcher, P.O. Box 7, Miki-cho Post Office, Ikenobe 3011-2, Kagawa-Ken, Miki-cho 761-0799, Japan;
| | - Lin Fang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (Y.L.); (X.Z.); (Q.C.); (L.F.)
| | - Guohua Ma
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; (Y.L.); (X.Z.); (Q.C.); (L.F.)
- Correspondence:
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Tao R, Yu W, Gao Y, Ni J, Yin L, Zhang X, Li H, Wang D, Bai S, Teng Y. Light-Induced Basic/Helix-Loop-Helix64 Enhances Anthocyanin Biosynthesis and Undergoes CONSTITUTIVELY PHOTOMORPHOGENIC1-Mediated Degradation in Pear. PLANT PHYSIOLOGY 2020; 184:1684-1701. [PMID: 33093233 PMCID: PMC7723087 DOI: 10.1104/pp.20.01188] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 10/14/2020] [Indexed: 05/12/2023]
Abstract
Light is indispensable for the anthocyanin accumulation of red pear (Pyrus pyrifolia). Anthocyanin biosynthesis is catalyzed by a series of enzymes encoded by structural genes, which are regulated by a MYB-basic/helix-loop-helix-WD repeat (MYB-bHLH-WDR [MBW]) complex. The bHLH proteins of subgroup (SG) IIIf are believed to be involved in the regulation of anthocyanin accumulation. In this study, we revealed that pear PpbHLH64, which belongs to SGIIIb, positively regulates anthocyanin biosynthesis and is regulated by light at the transcriptional and posttranslational levels. Specifically, an exposure to light induced PpbHLH64 expression and anthocyanin accumulation in pear fruit and calli. Under light conditions, pear calli overexpressing PpbHLH64 exhibited enhanced red coloration, whereas the anthocyanin accumulation decreased in the PpbHLH64-RNA interference calli. Additionally, the transient overexpression of PpbHLH64 in pear fruit peel increased anthocyanin accumulation, whereas the virus-induced gene silencing of PpbHLH64 had the opposite effect. Further analyses indicated that PpbHLH64 is a transcriptional activator that directly binds to the promoter of UDP-GLUCOSE:FLAVONOID 3-O-GLYCOSYLTRANFERASE to upregulate expression. Moreover, PpbHLH64 interacted with PpMYB10, but not with PpMYB114, to form an MBW complex that significantly induces the accumulation of anthocyanins. Furthermore, PpbHLH64 was targeted by CONSTITUTIVE PHOTOMORPHOGENIC1 in darkness for subsequent degradation by the 26S proteasome. A genetic analysis indicated that PpbHLH64 functions downstream of B-BOX18, a component of the light signal transduction pathway. However, we were unable to detect the direct interaction between PpbHLH64 and PpBBX18. The characterization of PpbHLH64 in this study highlights the importance of SGIIIb bHLH proteins for light-induced anthocyanin accumulation.
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Affiliation(s)
- Ruiyan Tao
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Wenjie Yu
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Yuhao Gao
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Junbei Ni
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Lei Yin
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Xiao Zhang
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Hongxu Li
- Institute of Fruit and Floriculture Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu 730070, People's Republic of China
| | - Dongsheng Wang
- Institute of Horticulture, Henan Academy of Agricultural Sciences, Zhengzhou, Henan 450002, People's Republic of China
| | - Songling Bai
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Yuanwen Teng
- Department of Horticulture, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Integrative Biology of Horticultural Plants, Hangzhou, Zhejiang 310058, People's Republic of China
- Key Laboratory of Horticultural Plant Growth, Development, and Quality Improvement, Ministry of Agriculture of China, Hangzhou, Zhejiang 310058, People's Republic of China
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Lu L, Liu P, Yang Y, Zhang Y, Wang C, Feng J, Wei J. Transcriptome analysis of Curcuma wenyujin from Haikou and Wenzhou, and a comparison of the main constituents and related genes of Rhizoma Curcumae. PLoS One 2020; 15:e0242776. [PMID: 33253249 PMCID: PMC7703983 DOI: 10.1371/journal.pone.0242776] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Accepted: 11/10/2020] [Indexed: 01/29/2023] Open
Abstract
For more than a thousand years, Rhizoma Curcumae (known as E zhu), a Chinese herbal medicine, has been used to eradicate blood stasis and relieve aches. The plant Curcuma wenyujin, which is grown primarily in Wenzhou, China, is considered the best source of Rhizoma Curcumae. In this study, we sought to ascertain differences in transcript profiles of C. wenyujin grown in traditional (Wenzhou) and recently established (Haikou) production areas based on Illumina and RNA (RNA-seq) sequencing. We also examined differences in the main components of the volatile oil terpene; curcumin, polysaccharide, and starch constituents and related genes in the corresponding pathways, in C. wenyujin cultivated in the two production areas. We accordingly found that the essential oil (2.05%), curcumin (1.46%), and polysaccharide (8.90%) content in Wenzhou rhizomes was higher than that in the rhizomes of plants from Haikou (1.60%, 0.91%, and 6.15%, respectively). In contrast, the starch content of Wenzhou rhizomes (17.0%) was lower than that of Haikou rhizomes (23.8%). Furthermore, we detected significant differences in the oil components of Haikou and Wenzhou rhizomes, with curzerene (32.34%), curdione (21.35%), and germacrene B (9.39%) being the primary components of the essential oil derived from Wenzhou rhizomes, and curzerene (20.13%), curdione (14.73%), and cineole (9.76%) being the main constituents in Haikou rhizomes. Transcriptome and qPCR analyses revealed considerable differences in gene expression between Wenzhou and Haikou rhizomes. The expression of terpene, curcumin, and polysaccharide pathway-related genes in Wenzhou rhizomes was significantly up-regulated, whereas the expression of starch-associated genes was significantly down-regulated, compared with those in Haikou rhizomes. Difference in the content of terpene, curcumin, polysaccharides, and starch in rhizomes from the two production areas could be explained in terms of differences in expression of the related genes.
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Affiliation(s)
- Lilan Lu
- Haikou Provincial Key Laboratory of Resources Conservation and Development of Southern Medicine, Haikou Branch of the Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haikou, China
- Hainan Key Laboratory of Tropical Oil Crops Biology/Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, China
- * E-mail: (LL); (JW)
| | - Peiwei Liu
- Haikou Provincial Key Laboratory of Resources Conservation and Development of Southern Medicine, Haikou Branch of the Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haikou, China
| | - Yanfang Yang
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, The Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Yuxiu Zhang
- Haikou Provincial Key Laboratory of Resources Conservation and Development of Southern Medicine, Haikou Branch of the Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haikou, China
| | - Caixia Wang
- Institute of Agricultural Environment and Soil, Hainan Academy of Agricultural Sciences, Haikou, China
| | - Jian Feng
- Haikou Provincial Key Laboratory of Resources Conservation and Development of Southern Medicine, Haikou Branch of the Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haikou, China
| | - Jianhe Wei
- Haikou Provincial Key Laboratory of Resources Conservation and Development of Southern Medicine, Haikou Branch of the Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haikou, China
- * E-mail: (LL); (JW)
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Liu J, Li Z, Ghanizadeh H, Kerckhoffs H, Sofkova-Bobcheva S, Wu W, Wang X, Liu Y, Li X, Zhao H, Chen X, Zhang Y, Wang A. Comparative Genomic and Physiological Analyses of a Superoxide Dismutase Mimetic (SODm-123) for Its Ability to Respond to Oxidative Stress in Tomato Plants. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:13608-13619. [PMID: 33175525 DOI: 10.1021/acs.jafc.0c04618] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Superoxide dismutases (SODs) are a group of enzymes that have a crucial role in controlling oxidative stress in plants. Here, we synthesized an environmentally friendly SOD mimic, SODm-123, from L-aspartic acid and manganese oxide. SODm-123 showed similar enzymatic activity to Mn-SOD. To gain insights into the role of SODm-123 in oxidative stress tolerance, a series of experiments were conducted to assess the physiological and molecular responses of tomato plants when treated with SODm-123. The results showed that the levels of O2-• and H2O2 in tomato cells were affected by SODm-123 treatment, indicating that SODm-123 can control oxidative stress like Mn-SOD. The results also exhibited that SODm-123 increased the contents of photosynthetic pigments. However, it was noted that SODm-123 resulted in a reduction in the content of soluble sugar and MDA. These results indicate that SODm-123 promoted the efficiency of photosynthesis by regulating the content of H2O2. To further investigate the role of SODm-123 in controlling oxidative stress, a transcriptome analysis was used to identify differentially expressed genes (DEGs) associated with SODm-123 treatment. The results indicated that SODm-123 treatment resulted in 341 differentially expressed genes (DEGs) in treated tomato leaves at 96 h after treatment. Kyoto encyclopedia of genes and genomes (KEGG) revealed that DEGs were involved in pathways such as photosynthetic pigment biosynthesis, ABC transporters, sugar metabolism, and MAPK signaling, which further confirmed a positive role of SODm-123 in improving stress tolerance in plants. Overall, the results of this study suggest that SODm-123 promotes the growth and development of tomato seedlings and therefore can be used as a potential growth-promoting agent for plants.
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Affiliation(s)
- Jiayin Liu
- College of Arts and Sciences, Northeast Agricultural University, Harbin 150030, China
| | - Zhugang Li
- Institute of Tillage and Cultivation, Heilongjiang Academy of Agricultural Sciences, Harbin 150086, China
| | - Hossein Ghanizadeh
- School of Agriculture and Environment, Massey University, Palmerston North 4442, New Zealand
| | - Huub Kerckhoffs
- School of Agriculture and Environment, Massey University, Palmerston North 4442, New Zealand
| | - Svetla Sofkova-Bobcheva
- School of Agriculture and Environment, Massey University, Palmerston North 4442, New Zealand
| | - Wending Wu
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Xinyu Wang
- College of Arts and Sciences, Northeast Agricultural University, Harbin 150030, China
| | - Yanxin Liu
- College of Arts and Sciences, Northeast Agricultural University, Harbin 150030, China
| | - Xinmao Li
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Hui Zhao
- Daqing High-Tech Zone Huamei Technology Co., Ltd., Daqing 161090, China
| | - Xiuling Chen
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Yao Zhang
- College of Life Sciences, Northeast Agricultural University, Harbin 150030, China
| | - Aoxue Wang
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
- College of Life Sciences, Northeast Agricultural University, Harbin 150030, China
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Li N, Flanagan BA, Partridge M, Huang EJ, Edmands S. Sex differences in early transcriptomic responses to oxidative stress in the copepod Tigriopus californicus. BMC Genomics 2020; 21:759. [PMID: 33143643 PMCID: PMC7607713 DOI: 10.1186/s12864-020-07179-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 10/22/2020] [Indexed: 01/21/2023] Open
Abstract
Background Patterns of gene expression can be dramatically different between males and females of the same species, in part due to genes on sex chromosomes. Here we test for sex differences in early transcriptomic response to oxidative stress in a species which lacks heteromorphic sex chromosomes, the copepod Tigriopus californicus. Results Male and female individuals were separately exposed to control conditions and pro-oxidant conditions (hydrogen peroxide and paraquat) for periods of 3 hours and 6 hours. Variance partitioning showed the greatest expression variance among individuals, highlighting the important information that can be obscured by the common practice of pooling individuals. Gene expression variance between sexes was greater than that among treatments, showing the profound effect of sex even when males and females share the same genome. Males exhibited a larger response to both pro-oxidants, differentially expressing more than four times as many genes, including up-regulation of more antioxidant genes, heat shock proteins and protease genes. While females differentially expressed fewer genes, the magnitudes of fold change were generally greater, indicating a more targeted response. Although females shared a smaller fraction of differentially expressed genes between stressors and time points, expression patterns of antioxidant and protease genes were more similar between stressors and more GO terms were shared between time points. Conclusions Early transcriptomic responses to the pro-oxidants H2O2 and paraquat in copepods revealed substantial variation among individuals and between sexes. The finding of such profound sex differences in oxidative stress response, even in the absence of sex chromosomes, highlights the importance of studying both sexes and the potential for developing sex-specific strategies to promote optimal health and aging in humans. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-020-07179-5.
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Affiliation(s)
- Ning Li
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089, USA.
| | - Ben A Flanagan
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089, USA
| | - MacKenzie Partridge
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089, USA
| | - Elaine J Huang
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089, USA
| | - Suzanne Edmands
- Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA, 90089, USA
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48
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Borisova-Mubarakshina MM, Vetoshkina DV, Naydov IA, Rudenko NN, Zhurikova EM, Balashov NV, Ignatova LK, Fedorchuk TP, Ivanov BN. Regulation of the size of photosystem II light harvesting antenna represents a universal mechanism of higher plant acclimation to stress conditions. FUNCTIONAL PLANT BIOLOGY : FPB 2020; 47:959-969. [PMID: 32564779 DOI: 10.1071/fp19362] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Accepted: 04/25/2020] [Indexed: 06/11/2023]
Abstract
We investigated acclimatory responses of Arabidopsis plants to drought and salinity conditions before the appearance of obvious signs of damage caused by these factors. We detected changes indicating an increase in the reduction level of the chloroplast plastoquinone pool (PQ pool) 5-7 days after introduction of the stress factors. After 10-14 days, a decrease in the size of PSII light harvesting antenna was observed in plants under conditions of drought and salinity. This was confirmed by a decrease in content of PSII antenna proteins and by downregulation of gene expression levels of these proteins under the stress conditions. No changes in values of performance index and maximum quantum yield of PSII were detected. Under drought and salinity, the content of hydrogen peroxide in leaves was higher than in control leaves. Thus, we propose that reduction of the size of PSII antenna represents one of the universal mechanisms of acclimation of higher plants to stress factors and the downsizing already begins to manifest under mild stress conditions. Both the PQ pool reduction state and the hydrogen peroxide content are important factors needed for the observed rearrangement.
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Affiliation(s)
- Maria M Borisova-Mubarakshina
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation; and Corresponding author.
| | - Daria V Vetoshkina
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
| | - Ilya A Naydov
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
| | - Natalia N Rudenko
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
| | - Elena M Zhurikova
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
| | - Nikolai V Balashov
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation; and Lomonosov Moscow State University, GSP-1, Leninskie Gory, Moscow, 119991, Russian Federation
| | - Lyudmila K Ignatova
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
| | - Tatyana P Fedorchuk
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
| | - Boris N Ivanov
- Institute of Basic Biological Problems RAS, Institutskaya st. 2, Pushchino, 142290, Moscow region, Russian Federation
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49
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Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient Arabidopsis against Photorespiratory Stress. Cells 2020; 9:cells9092026. [PMID: 32887516 PMCID: PMC7563276 DOI: 10.3390/cells9092026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 08/26/2020] [Accepted: 08/31/2020] [Indexed: 11/24/2022] Open
Abstract
Alterations of hydrogen peroxide (H2O2) levels have a profound impact on numerous signaling cascades orchestrating plant growth, development, and stress signaling, including programmed cell death. To expand the repertoire of known molecular mechanisms implicated in H2O2 signaling, we performed a forward chemical screen to identify small molecules that could alleviate the photorespiratory-induced cell death phenotype of Arabidopsisthaliana mutants lacking H2O2-scavenging capacity by peroxisomal catalase2. Here, we report the characterization of pakerine, an m-sulfamoyl benzamide from the sulfonamide family. Pakerine alleviates the cell death phenotype of cat2 mutants exposed to photorespiration-promoting conditions and delays dark-induced senescence in wild-type Arabidopsis leaves. By using a combination of transcriptomics, metabolomics, and affinity purification, we identified abnormal inflorescence meristem 1 (AIM1) as a putative protein target of pakerine. AIM1 is a 3-hydroxyacyl-CoA dehydrogenase involved in fatty acid β-oxidation that contributes to jasmonic acid (JA) and salicylic acid (SA) biosynthesis. Whereas intact JA biosynthesis was not required for pakerine bioactivity, our results point toward a role for β-oxidation-dependent SA production in the execution of H2O2-mediated cell death.
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50
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Autophagy-Related 2 Regulates Chlorophyll Degradation under Abiotic Stress Conditions in Arabidopsis. Int J Mol Sci 2020; 21:ijms21124515. [PMID: 32630439 PMCID: PMC7350272 DOI: 10.3390/ijms21124515] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 06/14/2020] [Accepted: 06/24/2020] [Indexed: 12/13/2022] Open
Abstract
Chloroplasts are extraordinary organelles for photosynthesis and nutrient storage in plants. During leaf senescence or under stress conditions, damaged chloroplasts are degraded and provide nutrients for developing organs. Autophagy is a high-throughput degradation pathway for intracellular material turnover in eukaryotes. Along with chloroplast degradation, chlorophyll, an important component of the photosynthetic machine, is also degraded. However, the chlorophyll degradation pathways under high light intensity and high temperature stress are not well known. Here, we identified and characterized a novel Arabidopsis mutant, sl2 (seedling lethal 2), showing defective chloroplast development and accelerated chlorophyll degradation. Map-based cloning combined with high-throughput sequencing analysis revealed that a 118.6 kb deletion region was associated with the phenotype of the mutant. Complementary experiments confirmed that the loss of function of ATG2 was responsible for accelerating chlorophyll degradation in sl2 mutants. Furthermore, we analyzed chlorophyll degradation under abiotic stress conditions and found that both chloroplast vesiculation and autophagy take part in chlorophyll degradation under high light intensity and high temperature stress. These results enhanced our understanding of chlorophyll degradation under high light intensity and high temperature stress.
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