1
|
Vangestel C, Swaegers J, De Corte Z, Dekoninck W, Gharbi K, Gillespie R, Vandekerckhove M, Van Belleghem SM, Hendrickx F. Chromosomal inversions from an initial ecotypic divergence drive a gradual repeated radiation of Galápagos beetles. SCIENCE ADVANCES 2024; 10:eadk7906. [PMID: 38820159 PMCID: PMC11141621 DOI: 10.1126/sciadv.adk7906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Accepted: 04/30/2024] [Indexed: 06/02/2024]
Abstract
Island faunas exhibit some of the most iconic examples where similar forms repeatedly evolve within different islands. Yet, whether these deterministic evolutionary trajectories within islands are driven by an initial, singular divergence and the subsequent exchange of individuals and adaptive genetic variation between islands remains unclear. Here, we study a gradual, repeated evolution of low-dispersive highland ecotypes from a dispersive lowland ecotype of Calosoma beetles along the island progression of the Galápagos. We show that repeated highland adaptation involved selection on multiple shared alleles within extensive chromosomal inversions that originated from an initial adaptation event on the oldest island. These highland inversions first spread through dispersal of highland individuals. Subsequent admixture with the lowland ecotype resulted in polymorphic dispersive populations from which the highland populations evolved on the youngest islands. Our findings emphasize the significance of an ancient divergence in driving repeated evolution and highlight how a mixed contribution of inter-island colonization and within-island evolution can shape parallel species communities.
Collapse
Affiliation(s)
- Carl Vangestel
- Royal Belgian Institute of Natural Sciences, Brussels, Belgium
- Terrestrial Ecology Unit, Biology Department, Ghent University, Gent, Belgium
| | - Janne Swaegers
- Royal Belgian Institute of Natural Sciences, Brussels, Belgium
- Ecology, Evolution and Conservation Biology, Biology Department, University of Leuven, Leuven, Belgium
| | - Zoë De Corte
- Royal Belgian Institute of Natural Sciences, Brussels, Belgium
- Terrestrial Ecology Unit, Biology Department, Ghent University, Gent, Belgium
| | | | - Karim Gharbi
- Earlham Institute, Norwich Research Park, Norfolk, United Kingdom
| | - Rosemary Gillespie
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, CA, USA
| | - Matthias Vandekerckhove
- Royal Belgian Institute of Natural Sciences, Brussels, Belgium
- Terrestrial Ecology Unit, Biology Department, Ghent University, Gent, Belgium
| | - Steven M. Van Belleghem
- Ecology, Evolution and Conservation Biology, Biology Department, University of Leuven, Leuven, Belgium
| | - Frederik Hendrickx
- Royal Belgian Institute of Natural Sciences, Brussels, Belgium
- Terrestrial Ecology Unit, Biology Department, Ghent University, Gent, Belgium
| |
Collapse
|
2
|
Silva FLD, de Medeiros BAS, Farrell BD. Once upon a fly: The biogeographical odyssey of Labrundinia (Chironomidae, Tanypodinae), an aquatic non-biting midge towards diversification. Mol Phylogenet Evol 2024; 194:108025. [PMID: 38342160 DOI: 10.1016/j.ympev.2024.108025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 01/17/2024] [Accepted: 02/04/2024] [Indexed: 02/13/2024]
Abstract
Labrundinia is a highly recognizable lineage in the Pentaneurini tribe (Diptera, Chironomidae). The distinct predatory free-swimming larvae of this genus are typically present in unpolluted aquatic environments, such as small streams, ponds, lakes, and bays. They can be found on the bottom mud, clinging to rocks and wood, and dwelling among aquatic vegetation. Labrundinia has been extensively studied in ecological research and comprises 39 species, all but one of which has been described from regions outside the Palearctic. Earlier phylogenetic studies have suggested that the initial diversification of the genus likely occurred in the Neotropical Region, with its current presence in the Nearctic Region and southern South America being the result of subsequent dispersal events. Through the integration of molecular and morphological data in a calibrated phylogeny, we reveal a complex and nuanced evolutionary history for Labrundinia, providing insights into its biogeographical and diversification patterns. In this comprehensive study, we analyze a dataset containing 46 Labrundinia species, totaling 10,662 characters, consisting of 10,616 nucleotide sites and 46 morphological characters. The molecular data was generated mainly by anchored enrichment hybrid methods. Using this comprehensive dataset, we inferred the phylogeny of the group based on a total evidence matrix. Subsequently, we employed the generated tree for time calibration and further analysis of biogeography and diversification patterns. Our findings reveal multiple dispersal events out of the Neotropics, where the group originated in the late Cretaceous approximately 72 million years ago (69-78 Ma). We further reveal that the genus experienced an early burst of diversification rates during the Paleocene, which gradually decelerated towards the present-day. We also find that the Neotropics have played a pivotal role in the evolution of Labrundinia by serving as both a cradle and a museum. By "cradle," we mean that the region has been a hotspot for the origin and diversification of new Labrundinia lineages, while "museum" refers to the region's ability to preserve ancestral lineages over extended periods. In summary, our findings indicate that the Neotropics have been a key source of genetic diversity for Labrundinia, resulting in the development of distinctive adaptations and characteristics within the genus. This evidence highlights the crucial role that these regions have played in shaping the evolutionary trajectory of Labrundinia.
Collapse
Affiliation(s)
- Fabio Laurindo da Silva
- Laboratory of Aquatic Insect Biodiversity and Ecology, Department of Zoology, Institute of Biosciences, University of São Paulo, São Paulo, Brazil; Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, USA.
| | - Bruno A S de Medeiros
- Field Museum of Natural History, Negaunee Integrative Research Center, Chicago, USA; Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, USA
| | - Brian D Farrell
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, USA
| |
Collapse
|
3
|
Sabolić I, Mira Ó, Brandt DYC, Lisičić D, Stapley J, Novosolov M, Bakarić R, Cizelj I, Glogoški M, Hudina T, Taverne M, Allentoft ME, Nielsen R, Herrel A, Štambuk A. Plastic and genomic change of a newly established lizard population following a founder event. Mol Ecol 2024; 33:e17255. [PMID: 38133599 DOI: 10.1111/mec.17255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 12/06/2023] [Accepted: 12/13/2023] [Indexed: 12/23/2023]
Abstract
Understanding how phenotypic divergence arises among natural populations remains one of the major goals in evolutionary biology. As part of competitive exclusion experiment conducted in 1971, 10 individuals of Italian wall lizard (Podarcis siculus (Rafinesque-Schmaltz, 1810)) were transplanted from Pod Kopište Island to the nearby island of Pod Mrčaru (Adriatic Sea). Merely 35 years after the introduction, the newly established population on Pod Mrčaru Island had shifted their diet from predominantly insectivorous towards omnivorous and changed significantly in a range of morphological, behavioural, physiological and ecological characteristics. Here, we combine genomic and quantitative genetic approaches to determine the relative roles of genetic adaptation and phenotypic plasticity in driving this rapid phenotypic shift. Our results show genome-wide genetic differentiation between ancestral and transplanted population, with weak genetic erosion on Pod Mrčaru Island. Adaptive processes following the founder event are indicated by highly differentiated genomic loci associating with ecologically relevant phenotypic traits, and/or having a putatively adaptive role across multiple lizard populations. Diverged traits related to head size and shape or bite force showed moderate heritability in a crossing experiment, but between-population differences in these traits did not persist in a common garden environment. Our results confirm the existence of sufficient additive genetic variance for traits to evolve under selection while also demonstrating that phenotypic plasticity and/or genotype by environment interactions are the main drivers of population differentiation at this early evolutionary stage.
Collapse
Affiliation(s)
- Iva Sabolić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Óscar Mira
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Débora Y C Brandt
- Department of Integrative Biology, University of Berkeley, Berkeley, California, USA
| | - Duje Lisičić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Jessica Stapley
- Department of Environmental Sciences, ETH Zurich, Zurich, Switzerland
| | - Maria Novosolov
- Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Robert Bakarić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Ivan Cizelj
- Zoological Garden of Zagreb, Zagreb, Croatia
| | - Marko Glogoški
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | | | - Maxime Taverne
- C.N.R.S/M.N.H.N., Département d'Ecologie et de Gestion de la Biodiversité, Paris, France
| | - Morten E Allentoft
- Lundbeck Foundation GeoGenetics Centre, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
- Trace and Environmental DNA (TrEnD) Laboratory, School of Molecular and Life Sciences, Curtin University, Perth, Western Australia, Australia
| | - Rasmus Nielsen
- Department of Integrative Biology, University of Berkeley, Berkeley, California, USA
| | - Anthony Herrel
- C.N.R.S/M.N.H.N., Département d'Ecologie et de Gestion de la Biodiversité, Paris, France
- Department of Biology, Evolutionary Morphology of Vertebrates, Ghent University, Ghent, Belgium
- Department of Biology, University of Antwerp, Wilrijk, Belgium
- Naturhistorisches Museum Bern, Bern, Switzerland
| | - Anamaria Štambuk
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| |
Collapse
|
4
|
Otalora K, Riera JL, Tavecchia G, Rotger A, Igual JM, Trotta JP, Baldo L. Population genetics and phylogeographic history of the insular lizard Podarcis lilfordi (Gunther, 1874) from the Balearic Islands based on genome-wide polymorphic data. Ecol Evol 2024; 14:e11407. [PMID: 38799398 PMCID: PMC11116764 DOI: 10.1002/ece3.11407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 04/12/2024] [Accepted: 04/30/2024] [Indexed: 05/29/2024] Open
Abstract
Islands provide a great system to explore the processes that maintain genetic diversity and promote local adaptation. We explored the genomic diversity of the Balearic lizard Podarcis lilfordi, an endemic species characterized by numerous small insular populations with large phenotypic diversity. Using the newly available genome for this species, we characterized more than 300,000 SNPs, merging genotyping-by-sequencing (GBS) data with previously published restriction site-associated DNA sequencing (RAD-Seq) data, providing a dataset of 16 island populations (191 individuals) across the range of species distribution (Menorca, Mallorca, and Cabrera). Results indicate that each islet hosts a well-differentiated population (F ST = 0.247 ± 0.09), with no recent immigration/translocation events. Contrary to expectations, most populations harbor a considerable genetic diversity (mean nucleotide diversity, P i = 0.144 ± 0.021), characterized by overall low inbreeding values (F IS < 0.1). While the genetic diversity significantly decreased with decreasing islet surface, maintenance of substantial genetic diversity even in tiny islets suggests variable selection or other mechanisms that buffer genetic drift. Maximum-likelihood tree based on concatenated SNP data confirmed the existence of the two major independent lineages of Menorca and Mallorca/Cabrera. Multiple lines of evidence, including admixture and root testing, robustly placed the origin of the species in the Mallorca Island, rather than in Menorca. Outlier analysis mainly retrieved a strong signature of genome differentiation between the two major archipelagos, especially in the sexual chromosome Z. A set of proteins were target of multiple outliers and primarily associated with binding and catalytic activity, providing interesting candidates for future selection studies. This study provides the framework to explore crucial aspects of the genetic basis of phenotypic divergence and insular adaptation.
Collapse
Affiliation(s)
- Katherin Otalora
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Biology FacultyUniversity of Barcelona (UB)BarcelonaSpain
- Fundación FUNMAJO, EBA, RAIEC, Biodiversity BranchTunjaBoyacáColombia
| | - Joan Lluís Riera
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Biology FacultyUniversity of Barcelona (UB)BarcelonaSpain
| | - Giacomo Tavecchia
- Animal Demography and Ecology Unit (GEDA‐IMEDEA, CSIC‐UIB)EsporlesSpain
| | - Andreu Rotger
- Animal Demography and Ecology Unit (GEDA‐IMEDEA, CSIC‐UIB)EsporlesSpain
| | - José Manuel Igual
- Animal Demography and Ecology Unit (GEDA‐IMEDEA, CSIC‐UIB)EsporlesSpain
| | - Jean‐Remi Paul Trotta
- CNAG‐CRG, Centre for Genomic Regulation (CRG)Barcelona Institute of Science and Technology (BIST)BarcelonaSpain
| | - Laura Baldo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Biology FacultyUniversity of Barcelona (UB)BarcelonaSpain
- Institute for Research on Biodiversity (IRBio)University of Barcelona (UB)BarcelonaSpain
| |
Collapse
|
5
|
Dufour P, Sayol F, Cooke R, Blackburn TM, Gallien L, Griesser M, Steinbauer MJ, Faurby S. The importance of migratory drop-off for island colonization in birds. Proc Biol Sci 2024; 291:20232926. [PMID: 38628117 PMCID: PMC11021927 DOI: 10.1098/rspb.2023.2926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Accepted: 03/14/2024] [Indexed: 04/19/2024] Open
Abstract
Seasonal migration is an underappreciated driver of animal diversification. Changes in migratory behaviour may favour the establishment of sedentary founder populations and promote speciation if there is sufficient reproductive isolation between sedentary and migratory populations. From a systematic literature review, we here quantify the role of migratory drop-off-the loss of migratory behaviour-in promoting speciation in birds on islands. We identify at least 157 independent colonization events likely initiated by migratory species that led to speciation, including 44 cases among recently extinct species. By comparing, for all islands, the proportion of island endemic species that derived from migratory drop-off with the proportion of migratory species among potential colonizers, we showed that seasonal migration has a larger effect on island endemic richness than direct dispersal. We also found that the role of migration in island colonization increases with the geographic isolation of islands. Furthermore, the success of speciation events depends in part on species biogeographic and ecological factors, here positively associated with greater range size and larger flock sizes. These results highlight the importance of shifts in migratory behaviour in the speciation process and calls for greater consideration of migratory drop-off in the biogeographic distribution of birds.
Collapse
Affiliation(s)
- Paul Dufour
- Department of Biological & Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| | - Ferran Sayol
- Centre for Ecological Research and Forestry Applications (CREAF), E08193 Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
| | - Rob Cooke
- UK Centre for Ecology & Hydrology, Maclean Building, Crowmarsh Gifford, Wallingford, Oxfordshire OX10 8BB, UK
| | - Tim M. Blackburn
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London WC1E 6BT, UK
- Institute of Zoology, Zoological Society of London, London NW1 4RY, UK
| | - Laure Gallien
- LECA, CNRS, Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, Chambéry, France
| | - Michael Griesser
- Department of Biology, University of Konstanz, Konstanz, Germany
- Center for the Advanced Study of Collective Behavior, University of Konstanz, Konstanz, Germany
- Department of Collective Behavior, Max Planck Institute of Animal Behavior, Konstanz, Germany
| | - Manuel J. Steinbauer
- Bayreuth Center of Ecology and Environmental Research (BayCEER) & Bayreuth Center of Sport Science (BaySpo), University of Bayreuth, Bayreuth, Germany
- Department of Biological Sciences, University of Bergen, Bergen, Norway
| | - Søren Faurby
- Department of Biological & Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| |
Collapse
|
6
|
Laojun S, Sontigun N, Chaiphongpachara T. Influence of insular conditions on wing phenotypic variation in two dominant mosquito vectors, Aedes albopictus and Armigeres subalbatus (Diptera: Culicidae), in the border archipelagos of Thailand. MEDICAL AND VETERINARY ENTOMOLOGY 2024. [PMID: 38641881 DOI: 10.1111/mve.12722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 04/05/2024] [Indexed: 04/21/2024]
Abstract
Insects geographically separated into island and mainland populations often exhibit phenotypic variations, a phenomenon known as insular conditions. These conditions can lead to rapid evolutionary changes that affect the morphological characteristics of mosquito vectors. Nevertheless, studies that specifically examine phenotype differences between island and mainland mosquito populations have been limited. In this study, wing variation in size and shape was investigated using the geometric morphometric (GM) technique in two dominant mosquito vectors, Aedes albopictus and Armigeres subalbatus, in the Ranong and Trat archipelagos of Thailand. Significant differences in average wing centroid size (CS) were found in 6 out of 15 population pairs for Ae. albopictus (p < 0.05) and in 5 population pairs for Ar. subalbatus (p < 0.05). After removing the allometric effect, canonical variate analyses (CVA) based on wing shape analysis revealed overlap across all populations for both Ae. albopictus and Ar. subalbatus. However, the statistical analysis indicated that Ar. subalbatus exhibited wing shape differences across all populations (p < 0.05), and most Ae. albopictus populations also displayed distinct wing shapes (p < 0.05), except for the populations from Chang Island and the mainland of Ranong, which showed no significant differences (p > 0.05). These findings enhance our understanding of mosquito adaptability in island regions and provide valuable data for the surveillance and monitoring of vector evolution.
Collapse
Affiliation(s)
- Sedthapong Laojun
- Department of Public Health and Health Promotion, College of Allied Health Sciences, Suan Sunandha Rajabhat University, Samut Songkhram, Thailand
| | - Narin Sontigun
- Akkhraratchakumari Veterinary College, Walailak University, Nakhon Si Thammarat, Thailand
- One Health Research Center, Walailak University, Nakhon Si Thammarat, Thailand
| | - Tanawat Chaiphongpachara
- Department of Public Health and Health Promotion, College of Allied Health Sciences, Suan Sunandha Rajabhat University, Samut Songkhram, Thailand
| |
Collapse
|
7
|
Blázquez M, Ortiz-Álvarez R, Gasulla F, Pérez-Vargas I, Pérez-Ortega S. Bacterial communities associated with an island radiation of lichen-forming fungi. PLoS One 2024; 19:e0298599. [PMID: 38498492 PMCID: PMC10947700 DOI: 10.1371/journal.pone.0298599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 01/28/2024] [Indexed: 03/20/2024] Open
Abstract
Evolutionary radiations are one of the most striking processes biologists have studied in islands. A radiation is often sparked by the appearance of ecological opportunity, which can originate in processes like trophic niche segregation or the evolution of key innovations. Another recently proposed mechanism is facilitation mediated by the bacterial communities associated with the radiating species. Here we explore the role of the bacterial communities in a radiation of lichen-forming fungi endemic to Macaronesia. Bacterial diversity was quantified by high throughput sequencing of the V1-V2 hyper-variable region of 172 specimens. We characterized the taxonomic and phylogenetic diversity of the bacterial communities associated with the different species, tested for compositional differences between these communities, carried out a functional prediction, explored the relative importance of different factors in bacterial community structure, searched for phylosymbiosis and tried to identify the origin of this pattern. The species of the radiation differed in the composition of their bacterial communities, which were mostly comprised of Alphaproteobacteria and Acidobacteriia, but not in the functionality of those communities. A phylosimbiotic pattern was detected, but it was probably caused by environmental filtering. These findings are congruent with the combined effect of secondary chemistry and mycobiont identity being the main driver of bacterial community structure. Altogether, our results suggest that the associated bacterial communities are not the radiation's main driver. There is one possible exception, however, a species that has an abnormally diverse core microbiome and whose bacterial communities could be subject to a specific environmental filter at the functional level.
Collapse
Affiliation(s)
| | | | - Francisco Gasulla
- Department of Life Sciences, Universidad de Alcalá, Alcalá de Henares, Spain
| | - Israel Pérez-Vargas
- Department of Botany, Ecology and Plant Physiology, Universidad de La Laguna, San Cristóbal de La Laguna, Spain
| | | |
Collapse
|
8
|
Li S, Tu T, Li S, Yang X, Zheng Y, Guo LD, Zhang D, Jiang L. Different mechanisms underlie similar species-area relationships in two tropical archipelagoes. PLANT DIVERSITY 2024; 46:238-246. [PMID: 38807910 PMCID: PMC11128831 DOI: 10.1016/j.pld.2023.08.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 07/26/2023] [Accepted: 08/31/2023] [Indexed: 05/30/2024]
Abstract
Despite much research in the field of island biogeography, mechanisms regulating insular diversity remain elusive. Here, we aim to explore mechanisms underlying plant species-area relationships in two tropical archipelagoes in the South China Sea. We found positive plant species-area relationships for both coral and continental archipelagoes. However, our results showed that different mechanisms contributed to similar plant species-area relationships between the two archipelagoes. For coral islands, soil nutrients and spatial distance among communities played major roles in shaping plant community structure and species diversity. By contrast, the direct effect of island area, and to a lesser extent, soil nutrients determined plant species richness on continental islands. Intriguingly, increasing soil nutrients availability (N, P, K) had opposite effects on plant diversity between the two archipelagoes. In summary, the habitat quality effect and dispersal limitation are important for regulating plant diversity on coral islands, whereas the passive sampling effect, and to a lesser extent, the habitat quality effect are important for regulating plant diversity on continental islands. More generally, our findings indicate that island plant species-area relationships are outcomes of the interplay of both niche and neutral processes, but the driving mechanisms behind these relationships depends on the type of islands.
Collapse
Affiliation(s)
- Shengchun Li
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
- ECNU-Alberta Joint Lab for Biodiversity Study, Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA
- Jiangxi Academy of Forestry, Nanchang 330032, China
| | - Tieyao Tu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Shaopeng Li
- ECNU-Alberta Joint Lab for Biodiversity Study, Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA
- Institute of Eco-Chongming (IEC), Shanghai 202162, China
| | - Xian Yang
- State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Guangzhou 510275, China
| | - Yong Zheng
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Liang-Dong Guo
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA
| |
Collapse
|
9
|
Dowle EJ, Trewick SA, Morgan-Richards M. Fossil-calibrated phylogenies of Southern cave wētā show dispersal and extinction confound biogeographic signal. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231118. [PMID: 38356874 PMCID: PMC10864783 DOI: 10.1098/rsos.231118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 01/19/2024] [Indexed: 02/16/2024]
Abstract
The biota of continents and islands are commonly considered to have a source-sink relationship, but small islands can harbour distinctive taxa. The distribution of four monotypic genera of Orthoptera on young subantarctic islands indicates a role for long-distance dispersal and extinction. Phylogenetic relationships were inferred from whole mtDNA genomes and nuclear sequences (45S cassette; four histones). We used a fossil and one palaeogeographic event to calibrate molecular clock analysis. We confirm that neither the Australian nor Aotearoa-New Zealand Rhaphidophoridae faunas are monophyletic. The radiation of Macropathinae may have begun in the late Jurassic, but trans-oceanic dispersal is required to explain the current distribution of some lineages within this subfamily. Dating the most recent common ancestor of seven island endemic species with their nearest mainland relative suggests that each existed long before their island home was available. Time estimates from our fossil-calibrated molecular clock analysis suggest several lineages have not been detected on mainland New Zealand, Australia, or elsewhere most probably due to their extinction, providing evidence that patterns of extinction, which are not consistently linked to range size or lineage age, confound biogeographic signal.
Collapse
Affiliation(s)
- Eddy J. Dowle
- Department of Anatomy, University of Otago, 9016 Dunedin, New Zealand
| | - Steven A. Trewick
- Ecology, School of Natural Sciences, Massey University Manawatū, Private Bag 11 222, Palmerston North 4410, New Zealand
| | - Mary Morgan-Richards
- Ecology, School of Natural Sciences, Massey University Manawatū, Private Bag 11 222, Palmerston North 4410, New Zealand
| |
Collapse
|
10
|
Gabrielli M, Leroy T, Salmona J, Nabholz B, Milá B, Thébaud C. Demographic responses of oceanic island birds to local and regional ecological disruptions revealed by whole-genome sequencing. Mol Ecol 2024; 33:e17243. [PMID: 38108507 DOI: 10.1111/mec.17243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/26/2023] [Accepted: 11/30/2023] [Indexed: 12/19/2023]
Abstract
Disentangling the effects of ecological disruptions operating at different spatial and temporal scales in shaping past species' demography is particularly important in the current context of rapid environmental changes driven by both local and regional factors. We argue that volcanic oceanic islands provide useful settings to study the influence of past ecological disruptions operating at local and regional scales on population demographic histories. We investigate potential drivers of past population dynamics for three closely related species of passerine birds from two volcanic oceanic islands, Reunion and Mauritius (Mascarene archipelago), with distinct volcanic history. Using ABC and PSMC inferences from complete genomes, we reconstructed the demographic history of the Reunion Grey White-eye (Zosterops borbonicus (Pennant, 1781)), the Reunion Olive White-eye (Z. olivaceus (Linnaeus, 1766)) and the Mauritius Grey White-eye (Z. mauritianus (Gmelin, 1789)) and searched for possible causes underlying similarities or differences between species living on the same or different islands. Both demographic inferences strongly support ancient and long-term expansions in all species. They also reveal different trajectories between species inhabiting different islands, but consistent demographic trajectories in species or populations from the same island. Species from Reunion appear to have experienced synchronous reductions in population size during the Last Glacial Maximum, a trend not seen in the Mauritian species. Overall, this study suggests that local events may have played a role in shaping population trajectories of these island species. It also highlights the potential of our conceptual framework to disentangle the effects of local and regional drivers on past species' demography and long-term population processes.
Collapse
Affiliation(s)
- Maëva Gabrielli
- Laboratoire Évolution et Diversité Biologique (EDB), UMR 5174 (Université Paul Sabatier, CNRS, IRD), Toulouse, France
- Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - Thibault Leroy
- GenPhySE, INRAE, INP, ENVT, Université de Toulouse, Castanet-Tolosan, France
| | - Jordi Salmona
- Laboratoire Évolution et Diversité Biologique (EDB), UMR 5174 (Université Paul Sabatier, CNRS, IRD), Toulouse, France
| | - Benoit Nabholz
- Institut des Sciences de l'Evolution de Montpellier, UMR 5554 (Université de Montpellier, CNRS, IRD, EPHE), Montpellier, France
| | - Borja Milá
- National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain
| | - Christophe Thébaud
- Laboratoire Évolution et Diversité Biologique (EDB), UMR 5174 (Université Paul Sabatier, CNRS, IRD), Toulouse, France
| |
Collapse
|
11
|
Keggin T, Waldock C, Skeels A, Hagen O, Albouy C, Manel S, Pellissier L. Diversity across organisational scale emerges through dispersal ability and speciation dynamics in tropical fish. BMC Biol 2023; 21:282. [PMID: 38053182 PMCID: PMC10696697 DOI: 10.1186/s12915-023-01771-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 11/20/2023] [Indexed: 12/07/2023] Open
Abstract
BACKGROUND Biodiversity exists at different levels of organisation: e.g. genetic, individual, population, species, and community. These levels of organisation all exist within the same system, with diversity patterns emerging across organisational scales through several key processes. Despite this inherent interconnectivity, observational studies reveal that diversity patterns across levels are not consistent and the underlying mechanisms for variable continuity in diversity across levels remain elusive. To investigate these mechanisms, we apply a spatially explicit simulation model to simulate the global diversification of tropical reef fishes at both the population and species levels through emergent population-level processes. RESULTS We find significant relationships between the population and species levels of diversity which vary depending on both the measure of diversity and the spatial partitioning considered. In turn, these population-species relationships are driven by modelled biological trait parameters, especially the divergence threshold at which populations speciate. CONCLUSIONS To explain variation in multi-level diversity patterns, we propose a simple, yet novel, population-to-species diversity partitioning mechanism through speciation which disrupts continuous diversity patterns across organisational levels. We expect that in real-world systems this mechanism is driven by the molecular dynamics that determine genetic incompatibility, and therefore reproductive isolation between individuals. We put forward a framework in which the mechanisms underlying patterns of diversity across organisational levels are universal, and through this show how variable patterns of diversity can emerge through organisational scale.
Collapse
Affiliation(s)
- Thomas Keggin
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland.
- Unit of Land Change Science, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland.
| | - Conor Waldock
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry, Eawag - Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
| | - Alexander Skeels
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland
- Unit of Land Change Science, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
- Division of Ecology & Evolution, Research School of Biology, Australian National University Canberra, Canberra, Australia
| | - Oskar Hagen
- Evolution and Adaptation, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Ecological Modelling, UFZ-Helmholtz Centre for Environmental Research, Leipzig, Germany
| | - Camille Albouy
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland
- Unit of Land Change Science, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Stéphanie Manel
- CEFE, Univ. Montpellier, CNRS, EPHE- PSL University, Montpellier, France
- Institut Universitaire de France, Paris, France
| | - Loïc Pellissier
- Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland
- Unit of Land Change Science, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| |
Collapse
|
12
|
Emerson BC, Borges PAV, Cardoso P, Convey P, deWaard JR, Economo EP, Gillespie RG, Kennedy S, Krehenwinkel H, Meier R, Roderick GK, Strasberg D, Thébaud C, Traveset A, Creedy TJ, Meramveliotakis E, Noguerales V, Overcast I, Morlon H, Papadopoulou A, Vogler AP, Arribas P, Andújar C. Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands. Mol Ecol 2023; 32:6161-6176. [PMID: 36156326 DOI: 10.1111/mec.16683] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 08/11/2022] [Accepted: 08/19/2022] [Indexed: 12/01/2022]
Abstract
Current understanding of ecological and evolutionary processes underlying island biodiversity is heavily shaped by empirical data from plants and birds, although arthropods comprise the overwhelming majority of known animal species, and as such can provide key insights into processes governing biodiversity. Novel high throughput sequencing (HTS) approaches are now emerging as powerful tools to overcome limitations in the availability of arthropod biodiversity data, and hence provide insights into these processes. Here, we explored how these tools might be most effectively exploited for comprehensive and comparable inventory and monitoring of insular arthropod biodiversity. We first reviewed the strengths, limitations and potential synergies among existing approaches of high throughput barcode sequencing. We considered how this could be complemented with deep learning approaches applied to image analysis to study arthropod biodiversity. We then explored how these approaches could be implemented within the framework of an island Genomic Observatories Network (iGON) for the advancement of fundamental and applied understanding of island biodiversity. To this end, we identified seven island biology themes at the interface of ecology, evolution and conservation biology, within which collective and harmonized efforts in HTS arthropod inventory could yield significant advances in island biodiversity research.
Collapse
Affiliation(s)
- Brent C Emerson
- Island Ecology and Evolution Research Group, Institute of Natural Products and Agrobiology (IPNA-CSIC), San Cristóbal de la Laguna, Spain
| | - Paulo A V Borges
- Centre for Ecology, Evolution and Environmental Changes (cE3c)/Azorean Biodiversity Group, Faculty of Agricultural Sciences and Environment, CHANGE - Global Change and Sustainability Institute, University of the Azores, Angra do Heroísmo, Portugal
| | - Pedro Cardoso
- Centre for Ecology, Evolution and Environmental Changes (cE3c)/Azorean Biodiversity Group, Faculty of Agricultural Sciences and Environment, CHANGE - Global Change and Sustainability Institute, University of the Azores, Angra do Heroísmo, Portugal
- Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History Luomus, University of Helsinki, Helsinki, Finland
| | - Peter Convey
- British Antarctic Survey, NERC, Cambridge, UK
- Department of Zoology, University of Johannesburg, Auckland Park, South Africa
| | - Jeremy R deWaard
- Centre for Biodiversity Genomics, University of Guelph, Guelph, Canada
- School of Environmental Sciences, University of Guelph, Guelph, Canada
| | - Evan P Economo
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
- Radcliffe Institute for Advanced Study, Harvard University, Cambridge, Massachusetts, USA
| | - Rosemary G Gillespie
- Department of Environmental Science, Policy and Management, University of California, Berkeley, Berkeley, California, USA
| | - Susan Kennedy
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
| | | | - Rudolf Meier
- Center for Integrative Biodiversity Discovery, Leibniz Institute for Evolution and Biodiversity Science, Museum für Naturkunde, Berlin, Germany
- Department of Biological Sciences, National University of Singapore, Singapore City, Singapore
| | - George K Roderick
- Department of Environmental Science, Policy and Management, University of California, Berkeley, Berkeley, California, USA
| | | | - Christophe Thébaud
- UMR 5174 EDB Laboratoire Évolution & Diversité Biologique, Université Paul Sabatier Toulouse III, CNRS, IRD, Toulouse, France
| | - Anna Traveset
- Global Change Research Group, Mediterranean Institut of Advanced Studies (CSIC-UIB), Mallorca, Spain
| | - Thomas J Creedy
- Department of Life Sciences, Natural History Museum, London, UK
| | | | - Víctor Noguerales
- Island Ecology and Evolution Research Group, Institute of Natural Products and Agrobiology (IPNA-CSIC), San Cristóbal de la Laguna, Spain
| | - Isaac Overcast
- Département de Biologie, École normale supérieure, Institut de Biologie de l'ENS (IBENS), CNRS, INSERM, Université PSL, Paris, France
| | - Hélène Morlon
- Département de Biologie, École normale supérieure, Institut de Biologie de l'ENS (IBENS), CNRS, INSERM, Université PSL, Paris, France
| | - Anna Papadopoulou
- Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus
| | - Alfried P Vogler
- Department of Life Sciences, Natural History Museum, London, UK
- Department of Life Sciences, Imperial College London, London, UK
| | - Paula Arribas
- Island Ecology and Evolution Research Group, Institute of Natural Products and Agrobiology (IPNA-CSIC), San Cristóbal de la Laguna, Spain
| | - Carmelo Andújar
- Island Ecology and Evolution Research Group, Institute of Natural Products and Agrobiology (IPNA-CSIC), San Cristóbal de la Laguna, Spain
| |
Collapse
|
13
|
Kennedy S, Calaor J, Zurápiti Y, Hans J, Yoshimura M, Choo J, Andersen JC, Callaghan J, Roderick GK, Krehenwinkel H, Rogers H, Gillespie RG, Economo EP. Richness and resilience in the Pacific: DNA metabarcoding enables parallelized evaluation of biogeographic patterns. Mol Ecol 2023; 32:6710-6723. [PMID: 35729790 DOI: 10.1111/mec.16575] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 06/04/2022] [Accepted: 06/09/2022] [Indexed: 11/29/2022]
Abstract
Islands make up a large proportion of Earth's biodiversity, yet are also some of the most sensitive systems to environmental perturbation. Biogeographic theory predicts that geologic age, area, and isolation typically drive islands' diversity patterns, and thus potentially impact non-native spread and community homogenization across island systems. One limitation in testing such predictions has been the difficulty of performing comprehensive inventories of island biotas and distinguishing native from introduced taxa. Here, we use DNA metabarcoding and statistical modelling as a high throughput method to survey community-wide arthropod richness, the proportion of native and non-native species, and the incursion of non-natives into primary habitats on three archipelagos in the Pacific - the Ryukyus, the Marianas and Hawaii - which vary in age, isolation and area. Diversity patterns largely match expectations based on island biogeography theory, with the oldest and most geographically connected archipelago, the Ryukyus, showing the highest taxonomic richness and lowest proportion of introduced species. Moreover, we find evidence that forest habitats are more resilient to incursions of non-natives in the Ryukyus than in the less taxonomically rich archipelagos. Surprisingly, we do not find evidence for biotic homogenization across these three archipelagos: the assemblage of non-native species on each island is highly distinct. Our study demonstrates the potential of DNA metabarcoding to facilitate rapid estimation of biogeographic patterns, the spread of non-native species, and the resilience of ecosystems.
Collapse
Affiliation(s)
- Susan Kennedy
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
- Department of Biogeography, Trier University, Trier, Germany
| | - Jerilyn Calaor
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Yazmín Zurápiti
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
| | - Julian Hans
- Department of Biogeography, Trier University, Trier, Germany
| | - Masashi Yoshimura
- Environmental Research Support Section, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
| | - Juanita Choo
- Science and Technology Group, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
| | - Jeremy C Andersen
- Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, Massachusetts, USA
| | - Jackson Callaghan
- Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA
| | - George K Roderick
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California, USA
| | | | - Haldre Rogers
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Rosemary G Gillespie
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California, USA
| | - Evan P Economo
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
- Radcliffe Institute for Advanced Study, Harvard University, Cambridge, Massachusetts, USA
| |
Collapse
|
14
|
Tommasi N, Biella P, Maggioni D, Fallati L, Agostinetto G, Labra M, Galli P, Galimberti A. DNA metabarcoding unveils the effects of habitat fragmentation on pollinator diversity, plant-pollinator interactions, and pollination efficiency in Maldive islands. Mol Ecol 2023; 32:6394-6404. [PMID: 35651283 DOI: 10.1111/mec.16537] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 04/26/2022] [Accepted: 05/05/2022] [Indexed: 11/30/2022]
Abstract
Habitat fragmentation affects biodiversity, but with unclear effects on pollinators and their interactions with plants in anthropized landscapes. Islands could serve as open air laboratories, suitable to disentangle how land-use alteration impacts pollination ecology. In Maldive islands we investigated how pollinator richness, plant-pollinator interactions and pollination efficiency are influenced by the green area fragmentation (i.e., gardens and semi-natural patches). Moreover, we considered the mediating role of pollinator body size and the plant trait of being invasive in shaping interactions. To do this, we surveyed pollinator insects from 11 islands representing a gradient of green area fragmentation. A DNA metabarcoding approach was adopted to identify the pollen transported by pollinators and characterize the plant-pollinator interactions. We found that intermediate levels of green area fragmentation characterized pollinator communities and increased their species richness, while decreasing interaction network complexity. Invasive plants were more frequently found on pollinator bodies than native or exotic noninvasive ones, indicating a concerningly higher potential for pollen dispersal and reproduction of the former ones. Intriguingly, pollinator body size mediated the effect of landscape alteration on interactions, as only the largest bees expanded the foraging diet in terms of plant richness in the transported pollen at increasing fragmentation. In parallel, the pollination efficiency increased with pollinator species richness in two sentinel plants. This study shows that moderate landscape fragmentation of green areas shapes many aspects of the pollination ecosystem service, where despite interactions being less complex and mediated by pollinator body size, pollinator insect biodiversity and potential plant reproduction are supported.
Collapse
Affiliation(s)
- Nicola Tommasi
- ZooplantLab, Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
- INFN Sezione Milano Bicocca, Milan, Italy
| | - Paolo Biella
- ZooplantLab, Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
| | - Davide Maggioni
- Earth and Environmental Science Department, University of Milano Bicocca, Milan, Italy
- MaRHE Center (Marine Research and High Education Center), Magoodhoo, Maldives
| | - Luca Fallati
- Earth and Environmental Science Department, University of Milano Bicocca, Milan, Italy
- MaRHE Center (Marine Research and High Education Center), Magoodhoo, Maldives
| | - Giulia Agostinetto
- ZooplantLab, Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
| | - Massimo Labra
- ZooplantLab, Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
- INFN Sezione Milano Bicocca, Milan, Italy
| | - Paolo Galli
- Earth and Environmental Science Department, University of Milano Bicocca, Milan, Italy
- MaRHE Center (Marine Research and High Education Center), Magoodhoo, Maldives
| | - Andrea Galimberti
- ZooplantLab, Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
- INFN Sezione Milano Bicocca, Milan, Italy
| |
Collapse
|
15
|
Jian J, Yuan Y, Vilatersana R, Li L, Wang Y, Zhang W, Song Z, Kong H, Peter Comes H, Yang J. Phylogenomic and population genomic analyses reveal the spatial-temporal dynamics of diversification of the Nigella arvensis complex (Ranunculaceae) in the Aegean archipelago. Mol Phylogenet Evol 2023; 188:107908. [PMID: 37598984 DOI: 10.1016/j.ympev.2023.107908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/13/2023] [Accepted: 08/17/2023] [Indexed: 08/22/2023]
Abstract
The continental-shelf islands of the Aegean Sea provide an ideal geographical setting for evolutionary-biogeographical studies but disentangling the relationships between palaeogeographical history and the times, orders of modes of taxon divergence is not straightforward. Here, we used phylogenomic and population genomic approaches, based on orthologous gene sequences and transcriptome-derived SNP data, to reconstruct the spatial-temporal evolution of the Aegean Nigella arvensis complex (Ranunculaceae; 11 out of 12 taxa). The group's early diversification in the Early/Mid-Pliocene (c. 3.77 Mya) resulted in three main lineages (Greek mainland vs. central Aegean + Turkish mainland/eastern Aegean islands), while all extant taxa are of Late Plio-/Early Pleistocene origin (c. 3.30-1.59 Mya). Demographic modelling of the outcrossing taxa uncovered disparate modes of (sub)speciation, including divergence with gene flow on the Greek mainland, para- or peripatric diversification across eastern Aegean islands, and a 'mixing-isolation-mixing (MIM)' mode of subspeciation in the Cyclades. The two selfing species (N. stricta, N. doerfleri) evolved independently from the outcrossers. Present-day island configurations are clearly insufficient to explain the spatial-temporal history of lineage diversification and modes of (sub)speciation in Aegean Nigella. Moreover, our identification of positively selected genes in almost all taxa calls into question that this plant group represents a case of 'non-adaptive' radiation. Our study revealed an episodic diversification history of the N. arvensis complex, giving new insight into the modes and drivers of island speciation and adaption across multiple spatiotemporal scales.
Collapse
Affiliation(s)
- Jinjing Jian
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Center for Evolutionary Biology, Fudan University, Shanghai 200438, China.
| | - Yi Yuan
- State Key Laboratory of Systematic and Evolutionary Botany, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Roser Vilatersana
- Botanic Institute of Barcelona (IBB, CSIC-ICUB), Barcelona 08038, Spain.
| | - Linfeng Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Center for Evolutionary Biology, Fudan University, Shanghai 200438, China.
| | - Yuguo Wang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Center for Evolutionary Biology, Fudan University, Shanghai 200438, China.
| | - Wenju Zhang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Center for Evolutionary Biology, Fudan University, Shanghai 200438, China.
| | - Zhiping Song
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Center for Evolutionary Biology, Fudan University, Shanghai 200438, China.
| | - Hongzhi Kong
- State Key Laboratory of Systematic and Evolutionary Botany, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Hans Peter Comes
- Department of Ecology and Evolution, University of Salzburg, Salzburg A5020, Austria.
| | - Ji Yang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Center for Evolutionary Biology, Fudan University, Shanghai 200438, China; Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai 201602, China.
| |
Collapse
|
16
|
Wyckhuys KAG, Leatemia JA, Fanani MZ, Furlong MJ, Gu B, Hadi BAR, Hasinu JV, Melo MC, Noya SH, Rauf A, Taribuka J, Gc YD. Generalist Predators Shape Biotic Resistance along a Tropical Island Chain. PLANTS (BASEL, SWITZERLAND) 2023; 12:3304. [PMID: 37765468 PMCID: PMC10536499 DOI: 10.3390/plants12183304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 09/12/2023] [Accepted: 09/12/2023] [Indexed: 09/29/2023]
Abstract
Islands offer exclusive prisms for an experimental investigation of biodiversity x ecosystem function interplay. Given that species in upper trophic layers, e.g., arthropod predators, experience a comparative disadvantage on small, isolated islands, such settings can help to clarify how predation features within biotic resistance equations. Here, we use observational and manipulative studies on a chain of nine Indonesian islands to quantify predator-mediated biotic resistance against the cassava mealybug Phenacoccus manihoti (Homoptera: Pseudococcidae) and the fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae). Across island settings, a diverse set of generalist lacewing, spider and ladybeetle predators aggregates on P. manihoti infested plants, attaining max. (field-level) abundance levels of 1.0, 8.0 and 3.2 individuals per plant, respectively. Though biotic resistance-as imperfectly defined by a predator/prey ratio index-exhibits no inter-island differences, P. manihoti population regulation is primarily provided through an introduced monophagous parasitoid. Meanwhile, resident predators, such as soil-dwelling ants, inflict apparent mortality rates up to 100% for various S. frugiperda life stages, which translates into a 13- to 800-fold lower S. frugiperda survivorship on small versus large islands. While biotic resistance against S. frugiperda is ubiquitous along the island chain, its magnitude differs between island contexts, seasons and ecological realms, i.e., plant canopy vs. soil surface. Hence, under our experimental context, generalist predators determine biotic resistance and exert important levels of mortality even in biodiversity-poor settings. Given the rapid pace of biodiversity loss and alien species accumulation globally, their active conservation in farmland settings (e.g., through pesticide phasedown) is pivotal to ensuring the overall resilience of production ecosystems.
Collapse
Affiliation(s)
- Kris A G Wyckhuys
- Chrysalis Consulting, Danang 50000, Vietnam
- Institute for Plant Protection, China Academy of Agricultural Sciences (CAAS), Beijing 100193, China
- School of the Environment, University of Queensland, Saint Lucia, QLD 4067, Australia
| | - Johanna Audrey Leatemia
- Department of Agrotechnology, Faculty of Agriculture, Universitas Pattimura, Ambon 97233, Indonesia
| | - Muhammad Zainal Fanani
- Department of Agrotechnology, Faculty of Agriculture, Universitas Djuanda, Jl. Tol Jagorawi No 1, Ciawi, Bogor 16720, West Java, Indonesia
- Department of Plant Protection, Faculty of Agriculture, Institut Pertanian Bogor, Jl. Kamper Kampus IPB Dramaga, Bogor 16680, West Java, Indonesia
| | - Michael J Furlong
- School of the Environment, University of Queensland, Saint Lucia, QLD 4067, Australia
| | - Baogen Gu
- Food and Agriculture Organization (FAO), 00153 Rome, Italy
| | | | - Jeffij Virgowat Hasinu
- Department of Agrotechnology, Faculty of Agriculture, Universitas Pattimura, Ambon 97233, Indonesia
| | - Maria C Melo
- School of the Environment, University of Queensland, Saint Lucia, QLD 4067, Australia
| | - Saartje Helena Noya
- Department of Agrotechnology, Faculty of Agriculture, Universitas Pattimura, Ambon 97233, Indonesia
| | - Aunu Rauf
- Department of Plant Protection, Faculty of Agriculture, Institut Pertanian Bogor, Jl. Kamper Kampus IPB Dramaga, Bogor 16680, West Java, Indonesia
| | - Johanna Taribuka
- Department of Agrotechnology, Faculty of Agriculture, Universitas Pattimura, Ambon 97233, Indonesia
| | - Yubak Dhoj Gc
- Food and Agriculture Organization (FAO), Bangkok 10200, Thailand
| |
Collapse
|
17
|
Hirschfeld M, Barnett A, Sheaves M, Dudgeon C. What Darwin could not see: island formation and historical sea levels shape genetic divergence and island biogeography in a coastal marine species. Heredity (Edinb) 2023; 131:189-200. [PMID: 37400518 PMCID: PMC10462691 DOI: 10.1038/s41437-023-00635-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 06/12/2023] [Accepted: 06/13/2023] [Indexed: 07/05/2023] Open
Abstract
Oceanic islands play a central role in the study of evolution and island biogeography. The Galapagos Islands are one of the most studied oceanic archipelagos but research has almost exclusively focused on terrestrial organisms compared to marine species. Here we used the Galapagos bullhead shark (Heterodontus quoyi) and single nucleotide polymorphisms (SNPs) to examine evolutionary processes and their consequences for genetic divergence and island biogeography in a shallow-water marine species without larval dispersal. The sequential separation of individual islands from a central island cluster gradually established different ocean depths between islands that pose barriers to dispersal in H. quoyi. Isolation by resistance analysis suggested that ocean bathymetry and historical sea level fluctuations modified genetic connectivity. These processes resulted in at least three genetic clusters that exhibit low genetic diversity and effective population sizes that scale with island size and the level of geographic isolation. Our results exemplify that island formation and climatic cycles shape genetic divergence and biogeography of coastal marine organisms with limited dispersal comparable to terrestrial taxa. Because similar scenarios exist in oceanic islands around the globe our research provides a new perspective on marine evolution and biogeography with implications for the conservation of island biodiversity.
Collapse
Affiliation(s)
- Maximilian Hirschfeld
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia.
- Galápagos Science Center, Universidad San Francisco de Quito, Isla San Cristóbal, Galápagos, Ecuador.
| | - Adam Barnett
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
- Marine Data Technology Hub, James Cook University, Townsville, Queensland, Australia
- Biopixel Oceans Foundation, Cairns, Queensland, Australia
| | - Marcus Sheaves
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
- Marine Data Technology Hub, James Cook University, Townsville, Queensland, Australia
| | - Christine Dudgeon
- Biopixel Oceans Foundation, Cairns, Queensland, Australia
- School of Biomedical Sciences, The University of Queensland, Saint Lucia, Queensland, Australia
| |
Collapse
|
18
|
González Gutiérrez PA, Fuentes-Bazan S, Di Vincenzo V, Berazaín-Iturralde R, Borsch T. The diversification of Caribbean Buxus in time and space: elevated speciation rates in lineages that accumulate nickel and spreading to other islands from Cuba in non-obligate ultramafic species. ANNALS OF BOTANY 2023; 131:1133-1147. [PMID: 37208295 PMCID: PMC10457035 DOI: 10.1093/aob/mcad063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 05/18/2023] [Indexed: 05/21/2023]
Abstract
BACKGROUND AND AIMS The genus Buxus has high levels of endemism in the Caribbean flora, with ~50 taxa. In Cuba, 82 % grow on ultramafic substrates and 59 % are nickel (Ni) accumulators or Ni hyperaccumulators. Hence it is an ideal model group to study if this diversification could be related to adaptation to ultramafic substrates and to Ni hyperaccumulation. METHODS We generated a well-resolved molecular phylogeny, including nearly all of the Neotropical and Caribbean Buxus taxa. To obtain robust divergence times we tested for the effects of different calibration scenarios, and we reconstructed ancestral areas and ancestral character states. Phylogenetic trees were examined for trait-independent shifts in diversification rates and we used multi-state models to test for state-dependent speciation and extinction rates. Storms could have contributed to Cuba acting as a species pump and to Buxus reaching other Caribbean islands and northern South America'. KEY RESULTS We found a Caribbean Buxus clade with Mexican ancestors, encompassing three major subclades, which started to radiate during the middle Miocene (13.25 Mya). Other Caribbean islands and northern South America were reached from ~3 Mya onwards. CONCLUSIONS An evolutionary scenario is evident in which Buxus plants able to grow on ultramafic substrates by exaptation became ultramafic substrate endemics and evolved stepwise from Ni tolerance through Ni accumulation to Ni hyperaccumulation, which has triggered species diversification of Buxus in Cuba. Storms could have contributed to Cuba acting as a species pump and to Buxus reaching other Caribbean islands and northern South America'.
Collapse
Affiliation(s)
- Pedro A González Gutiérrez
- Centro de Investigaciones y Servicios Ambientales de Holguín, Calle 18 s/n, entre 1ª y Maceo, Holguín 80100, Cuba
| | - Susy Fuentes-Bazan
- Institut für Biologie der Freien Universität Berlin. Altensteinstraße 6, 14195 Berlin, Germany
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Königin-Luise-Straße 6-8, 14195 Berlin, Germany
| | - Vanessa Di Vincenzo
- Institut für Biologie der Freien Universität Berlin. Altensteinstraße 6, 14195 Berlin, Germany
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Königin-Luise-Straße 6-8, 14195 Berlin, Germany
| | | | - Thomas Borsch
- Institut für Biologie der Freien Universität Berlin. Altensteinstraße 6, 14195 Berlin, Germany
- Botanischer Garten und Botanisches Museum Berlin-Dahlem, Königin-Luise-Straße 6-8, 14195 Berlin, Germany
| |
Collapse
|
19
|
Han Y, Hellgren O, Wu Q, Liu J, Jin T, Bensch S, Ding P. Seasonal variations of intensity of avian malaria infection in the Thousand Island Lake System, China. Parasit Vectors 2023; 16:218. [PMID: 37403099 DOI: 10.1186/s13071-023-05848-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 06/23/2023] [Indexed: 07/06/2023] Open
Abstract
BACKGROUND Migratory birds play an important part in the spread of parasites, with more or less impact on resident birds. Previous studies focus on the prevalence of parasites, but changes in infection intensity over time have rarely been studied. As infection intensity can be quantified by qPCR, we measured infection intensity during different seasons, which is important for our understanding of parasite transmission mechanisms. METHODS Wild birds were captured at the Thousand Island Lake with mist nets and tested for avian hemosporidiosis infections using nested PCR. Parasites were identified using the MalAvi database. Then, we used qPCR to quantify the infection intensity. We analyzed the monthly trends of intensity for all species and for different migratory status, parasite genera and sexes. RESULTS Of 1101 individuals, 407 were infected (37.0%) of which 95 were newly identified and mainly from the genus Leucocytozoon. The total intensity trend shows peaks at the start of summer, during the breeding season of hosts and during the over-winter season. Different parasite genera show different monthly trends. Plasmodium causes high prevalence and infection intensity of winter visitors. Female hosts show significant seasonal trends of infection intensity. CONCLUSIONS The seasonal changes of infection intensity is consistent with the prevalence. Peaks occur early and during the breeding season and then there is a downward trend. Spring relapses and avian immunity are possible reasons that could explain this phenomenon. In our study, winter visitors have a higher prevalence and infection intensity, but they rarely share parasites with resident birds. This shows that they were infected with Plasmodium during their departure or migration and rarely transmit the disease to resident birds. The different infection patterns of different parasite species may be due to vectors or other ecological properties.
Collapse
Affiliation(s)
- Yuxiao Han
- MOE Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Zhejiang, China
| | - Olof Hellgren
- Molecular Ecology and Evolution Lab, Department of Biology, Lund University, Lund, Sweden
| | - Qiang Wu
- MOE Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Zhejiang, China
| | - Juan Liu
- MOE Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Zhejiang, China
| | - Tinghao Jin
- MOE Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Zhejiang, China
| | - Staffan Bensch
- Molecular Ecology and Evolution Lab, Department of Biology, Lund University, Lund, Sweden
| | - Ping Ding
- MOE Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Zhejiang, China.
| |
Collapse
|
20
|
Llorens L, Cortés L, Boira H. Deciphering the ecology of the threatened microendemic species Euphorbia margalidiana. FRONTIERS IN PLANT SCIENCE 2023; 14:1155896. [PMID: 37434601 PMCID: PMC10332272 DOI: 10.3389/fpls.2023.1155896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 04/13/2023] [Indexed: 07/13/2023]
Abstract
Small islands play a critical role in the study of plant ecology and evolution. Here, we reveal the ecology of Euphorbia margalidiana, an endemic plant that thrives in a micro-island environment in the Western Mediterranean region. Through a detailed characterization of the habitat, including plant communities, microclimate, soil properties, and germination assays, we examine the effects of biotic and abiotic factors on the distribution of this endangered species. We also analyze its pollination biology, evaluate the success of vegetative propagation, and discuss its potential use in conservation strategies. Our results show that E. margalidiana is a characteristic species of the shrub ornitocoprophilous insular vegetation of the Western Mediterranean. The seeds have a very low dispersion capacity outside the islet and that seed-derived plants have higher survival rates under drought conditions than those vegetatively propagated. The main volatile compound emitted from the pseudanthia is phenol which attracts the plants' main and almost exclusive pollinators in the islet, flies. Our results confirm the relictual status of E. margalidiana and highlight the importance of key adaptive traits that enable the survival of this species in the harsh micro-island environment of Ses Margalides.
Collapse
Affiliation(s)
- Leonardo Llorens
- Interdisciplinary Ecology Group, Department of Biology, University of the Balearic Islands (UIB), Palma de Mallorca, Balearic Islands, Spain
| | - Lucas Cortés
- Independent Researcher, Palma de Mallorca, Spain
| | - Herminio Boira
- Institute of Mediterranean Agroforestry (IAM), Polytechnic University of Valencia (UPV), Valencia, Spain
| |
Collapse
|
21
|
Martínez AE, Si X, Zhou L, Zeng D, Ding P, Goodale E. Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220096. [PMID: 37066642 PMCID: PMC10107236 DOI: 10.1098/rstb.2022.0096] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 11/25/2022] [Indexed: 04/18/2023] Open
Abstract
Island biogeography theory has proved a robust approach to predicting island biodiversity on the assumption of species equivalency. However, species differ in their grouping behaviour and are entangled by complex interactions in island communities, such as competition and mutualism. We here investigated whether intra- and/or interspecific sociality may influence biogeographic patterns, by affecting movement between islands or persistence on them. We classified bird species in a subtropical reservoir island system into subcommunities based on their propensity to join monospecific and mixed-species flocks. We found that subcommunities which had high propensity to flock interspecifically had higher colonization rates and lower extinction rates over a 10-year period. Intraspecific sociality increased colonization in the same analysis. A phylogenetically corrected analysis confirmed the importance of interspecific sociality, but not intraspecific sociality. Group-living could enable higher risk crossings, with greater vigilance also linked to higher foraging efficiency, enabling colonization or long-term persistence on islands. Further, if group members are other species, competition can be minimized. Future studies should investigate different kinds of island systems, considering positive species interactions driven by social behaviour as potential drivers of community assembly on islands. This article is part of the theme issue 'Mixed-species groups and aggregations: shaping ecological and behavioural patterns and processes'.
Collapse
Affiliation(s)
- Ari E. Martínez
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, 100 DaXue Road, Nanning, Guangxi 530004, People's Republic of China
| | - Xingfeng Si
- Zhejiang Zhoushan Archipelago Observation and Research Station, Institute of Eco-Chongming, Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, People's Republic of China
| | - Liping Zhou
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, 100 DaXue Road, Nanning, Guangxi 530004, People's Republic of China
- Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, People's Republic of China
| | - Di Zeng
- Zhejiang Zhoushan Archipelago Observation and Research Station, Institute of Eco-Chongming, Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, People's Republic of China
| | - Ping Ding
- MOE Key Laboratory of Biosystems Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Eben Goodale
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, 100 DaXue Road, Nanning, Guangxi 530004, People's Republic of China
- Department of Health and Environmental Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, People's Republic of China
| |
Collapse
|
22
|
Jackson AC, White OW, Carine M, Chapman MA. The role of geography, ecology, and hybridization in the evolutionary history of Canary Island Descurainia. AMERICAN JOURNAL OF BOTANY 2023; 110:e16162. [PMID: 36990083 DOI: 10.1002/ajb2.16162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 03/15/2023] [Accepted: 03/15/2023] [Indexed: 05/31/2023]
Abstract
PREMISE Oceanic islands offer the opportunity to understand evolutionary processes underlying rapid diversification. Along with geographic isolation and ecological shifts, a growing body of genomic evidence has suggested that hybridization can play an important role in island evolution. Here we use genotyping-by-sequencing (GBS) to understand the roles of hybridization, ecology, and geographic isolation in the radiation of Canary Island Descurainia (Brassicaceae). METHODS We carried out GBS for multiple individuals of all Canary Island species and two outgroups. Phylogenetic analyses of the GBS data were performed using both supermatrix and gene tree approaches and hybridization events were examined using D-statistics and Approximate Bayesian Computation. Climatic data were analyzed to examine the relationship between ecology and diversification. RESULTS Analysis of the supermatrix data set resulted in a fully resolved phylogeny. Species networks suggest a hybridization event has occurred for D. gilva, with these results being supported by Approximate Bayesian Computation analysis. Strong phylogenetic signals for temperature and precipitation indicate one major ecological shift within Canary Island Descurainia. CONCLUSIONS Inter-island dispersal played a significant role in the diversification of Descurainia, with evidence of only one major shift in climate preferences. Despite weak reproductive barriers and the occurrence of hybrids, hybridization appears to have played only a limited role in the diversification of the group with a single instance detected. The results highlight the need to use phylogenetic network approaches that can simultaneously accommodate incomplete lineage sorting and gene flow when studying groups prone to hybridization; patterns that might otherwise be obscured in species trees.
Collapse
Affiliation(s)
- Amy C Jackson
- Biological Sciences, University of Southampton, Southampton, SO17 1BJ, United Kingdom
- Algae, Fungi and Plants Division, Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom
| | - Oliver W White
- Biological Sciences, University of Southampton, Southampton, SO17 1BJ, United Kingdom
- Algae, Fungi and Plants Division, Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom
| | - Mark Carine
- Algae, Fungi and Plants Division, Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom
| | - Mark A Chapman
- Biological Sciences, University of Southampton, Southampton, SO17 1BJ, United Kingdom
| |
Collapse
|
23
|
Ostwald MM, Thrift CN, Seltmann KC. Phenotypic divergence in an island bee population: Applying geometric morphometrics to discriminate population-level variation in wing venation. Ecol Evol 2023; 13:e10085. [PMID: 37181201 PMCID: PMC10172614 DOI: 10.1002/ece3.10085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 04/24/2023] [Accepted: 04/26/2023] [Indexed: 05/16/2023] Open
Abstract
Phenotypic divergence is an important consequence of restricted gene flow in insular populations. This divergence can be challenging to detect when it occurs through subtle shifts in morphological traits, particularly in traits with complex geometries, like insect wing venation. Here, we employed geometric morphometrics to assess the extent of variation in wing venation patterns across reproductively isolated populations of the social sweat bee, Halictus tripartitus. We examined wing morphology of specimens sampled from a reproductively isolated population of H. tripartitus on Santa Cruz Island (Channel Islands, Southern California). Our analysis revealed significant differentiation in wing venation in this island population relative to conspecific mainland populations. We additionally found that this population-level variation was less pronounced than the species-level variation in wing venation among three sympatric congeners native to the region, Halictus tripartitus, Halictus ligatus, and Halictus farinosus. Together, these results provide evidence for subtle phenotypic divergence in an island bee population. More broadly, these results emphasize the utility and potential of wing morphometrics for large-scale assessment of insect population structure.
Collapse
Affiliation(s)
- Madeleine M. Ostwald
- Cheadle Center for Biodiversity and Ecological RestorationUniversity of California Santa BarbaraSanta BarbaraCaliforniaUSA
| | - Charles N. Thrift
- Cheadle Center for Biodiversity and Ecological RestorationUniversity of California Santa BarbaraSanta BarbaraCaliforniaUSA
| | - Katja C. Seltmann
- Cheadle Center for Biodiversity and Ecological RestorationUniversity of California Santa BarbaraSanta BarbaraCaliforniaUSA
| |
Collapse
|
24
|
Brodie JF, Henao-Diaz LF, Pratama B, Copeland C, Wheeler T, Helmy OE. Fruit Size in Indo-Malayan Island Plants Is More Strongly Influenced by Filtering than by In Situ Evolution. Am Nat 2023; 201:574-585. [PMID: 36957999 DOI: 10.1086/723212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Abstract
AbstractCommunity trait assembly, the formation of distributions of phenotypic characteristics across coexisting species, can occur via two main processes: filtering of trait distributions from the regional pool and in situ phenotypic evolution in local communities. But the relative importance of these processes remains unclear, largely because of the difficulty in determining the timing of evolutionary trait changes and biogeographic dispersal events in phylogenies. We assessed evolutionary and biogeographic transitions in woody plant species across the Indo-Malay archipelago, a series of island groups where the same plant lineages interact with different seed disperser and seed predator assemblages. Fruit size in 2,650 taxa spanning the angiosperm tree of life tended to be smaller in the Sulawesi and Maluku island groups, where frugivores are less diverse and smaller bodied, than in the regional source pool. While numerous plant lineages (not just small-fruited ones) reached the isolated islands, colonists tended to be the smaller-fruited members of each clade. Nearly all of the evolutionary transitions to smaller fruit size predated, often substantially, organismal dispersal to the islands. Our results suggest that filtering rather than within-island evolution largely determined the distribution of fruit sizes in these regions.
Collapse
|
25
|
Maas DL, Prost S, de Leeuw CA, Bi K, Smith LL, Purwanto P, Aji LP, Tapilatu RF, Gillespie RG, Becking LE. Sponge diversification in marine lakes: Implications for phylogeography and population genomic studies on sponges. Ecol Evol 2023; 13:e9945. [PMID: 37066063 PMCID: PMC10099488 DOI: 10.1002/ece3.9945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 03/06/2023] [Accepted: 03/08/2023] [Indexed: 04/18/2023] Open
Abstract
The relative influence of geography, currents, and environment on gene flow within sessile marine species remains an open question. Detecting subtle genetic differentiation at small scales is challenging in benthic populations due to large effective population sizes, general lack of resolution in genetic markers, and because barriers to dispersal often remain elusive. Marine lakes can circumvent confounding factors by providing discrete and replicated ecosystems. Using high-resolution double digest restriction-site-associated DNA sequencing (4826 Single Nucleotide Polymorphisms, SNPs), we genotyped populations of the sponge Suberites diversicolor (n = 125) to test the relative importance of spatial scales (1-1400 km), local environmental conditions, and permeability of seascape barriers in shaping population genomic structure. With the SNP dataset, we show strong intralineage population structure, even at scales <10 km (average F ST = 0.63), which was not detected previously using single markers. Most variation was explained by differentiation between populations (AMOVA: 48.8%) with signatures of population size declines and bottlenecks per lake. Although the populations were strongly structured, we did not detect significant effects of geographic distance, local environments, or degree of connection to the sea on population structure, suggesting mechanisms such as founder events with subsequent priority effects may be at play. We show that the inclusion of morphologically cryptic lineages that can be detected with the COI marker can reduce the obtained SNP set by around 90%. Future work on sponge genomics should confirm that only one lineage is included. Our results call for a reassessment of poorly dispersing benthic organisms that were previously assumed to be highly connected based on low-resolution markers.
Collapse
Affiliation(s)
- Diede L. Maas
- Marine Animal EcologyWageningen University & ResearchWageningenThe Netherlands
| | - Stefan Prost
- LOEWE Centre for Translational Biodiversity GenomicsSenckenberg Natural History MuseumFrankfurt am MainGermany
- South African National Biodiversity InstituteNational Zoological Gardens of South AfricaPretoriaSouth Africa
| | | | - Ke Bi
- Museum of Vertebrate ZoologyUniversity of California BerkeleyBerkeleyCaliforniaUSA
- Computational Genomics Resource Laboratory, California Institute for Quantitative BiosciencesUniversity of California BerkeleyBerkeleyCaliforniaUSA
| | - Lydia L. Smith
- Museum of Vertebrate ZoologyUniversity of California BerkeleyBerkeleyCaliforniaUSA
| | | | - Ludi P. Aji
- Marine Animal EcologyWageningen University & ResearchWageningenThe Netherlands
- Research Centre for Oceanography, Indonesian Institute of SciencesLembaga Ilmu Pengetahuan IndonesiaJakartaIndonesia
| | - Ricardo F. Tapilatu
- Marine Science and Fisheries Departments and Research Center of Pacific Marine ResourcesState University of PapuaManokwariIndonesia
| | - Rosemary G. Gillespie
- Department of Environmental Science, Policy and ManagementUniversity of California BerkeleyBerkeleyCaliforniaUSA
| | - Leontine E. Becking
- Department of Environmental Science, Policy and ManagementUniversity of California BerkeleyBerkeleyCaliforniaUSA
- Aquaculture and Fisheries, Naturalis Biodiversity CenterWageningen University & ResearchWageningenThe Netherlands
| |
Collapse
|
26
|
de La Cruz F, Pérez i de Lanuza G, Font E. Signalling on islands: the case of Lilford’s wall lizard ( Podarcis lilfordi gigliolii) from Dragonera. Biol J Linn Soc Lond 2023. [DOI: 10.1093/biolinnean/blac152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2023]
Abstract
AbstractStudies of the effects of insularity on animal signals are scarce, particularly in lizards. Here, we use Lilford’s wall lizard from Dragonera (Podarcis lilfordi gigliolii) to ask how island conditions have affected its repertoire of social signals, focusing on two visual signals shared by many Podarcis species: ultraviolet (UV)–blue-reflecting ventrolateral colour patches and visual displays. We examined whether the number or spectral characteristics of the UV–blue patches are associated with traits related to individual quality. We also used visual models to assess visual conspicuousness and to measure sexual dichromatism. We did not observe foot shakes or any other visual displays usually found in continental Podarcis. We found that none of the UV–blue patch variables covaried with morphometric variables indicative of fighting ability or body condition in males, suggesting that this coloration does not signal individual quality. We also found very little sexual dichromatism. In particular, the UV–blue patches of females seem over-expressed and more similar to those of males than those of continental Podarcis. Ancestral state reconstruction reveals that the lack of sexual dimorphism in the UV–blue patches is a derived condition for P. lilfordi gigliolii and other Podarcis living on small islands. Our results thus show a pattern of reduced social signalling in P. lilfordi gigliolii relative to mainland Podarcis, with some signals being lost or under-expressed (visual displays) and others losing their signalling function (UV–blue patches). We hypothesize that these changes are attributable to the high population density of P. lilfordi gigliolii, which discourages territorial behaviour and promotes extreme social tolerance, making most social signals unnecessary. More work will be needed to determine whether this is a common pattern in lizards inhabiting small and densely populated islands.
Collapse
Affiliation(s)
- Ferran de La Cruz
- Ethology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia , APDO 22085, 46071 , Spain
- CIBIO Research Centre in Biodiversity and Genetic Resources, InBIO, Campus de Vairão, Universidade do Porto , 4485-661 , Portugal
| | - Guillem Pérez i de Lanuza
- Ethology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia , APDO 22085, 46071 , Spain
| | - Enrique Font
- Ethology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia , APDO 22085, 46071 , Spain
| |
Collapse
|
27
|
Cerca J, Cotoras DD, Bieker VC, De-Kayne R, Vargas P, Fernández-Mazuecos M, López-Delgado J, White O, Stervander M, Geneva AJ, Guevara Andino JE, Meier JI, Roeble L, Brée B, Patiño J, Guayasamin JM, Torres MDL, Valdebenito H, Castañeda MDR, Chaves JA, Díaz PJ, Valente L, Knope ML, Price JP, Rieseberg LH, Baldwin BG, Emerson BC, Rivas-Torres G, Gillespie R, Martin MD. Evolutionary genomics of oceanic island radiations. Trends Ecol Evol 2023:S0169-5347(23)00032-0. [PMID: 36870806 DOI: 10.1016/j.tree.2023.02.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 01/26/2023] [Accepted: 02/02/2023] [Indexed: 03/06/2023]
Abstract
A recurring feature of oceanic archipelagos is the presence of adaptive radiations that generate endemic, species-rich clades that can offer outstanding insight into the links between ecology and evolution. Recent developments in evolutionary genomics have contributed towards solving long-standing questions at this interface. Using a comprehensive literature search, we identify studies spanning 19 oceanic archipelagos and 110 putative adaptive radiations, but find that most of these radiations have not yet been investigated from an evolutionary genomics perspective. Our review reveals different gaps in knowledge related to the lack of implementation of genomic approaches, as well as undersampled taxonomic and geographic areas. Filling those gaps with the required data will help to deepen our understanding of adaptation, speciation, and other evolutionary processes.
Collapse
Affiliation(s)
- José Cerca
- Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
| | - Darko D Cotoras
- Department of Terrestrial Zoology, Senckenberg Research Institute and Natural History Museum, Senckenberganlage 25, 60325 Frankfurt am Main, Germany; Department of Entomology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA
| | - Vanessa C Bieker
- Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
| | - Rishi De-Kayne
- Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK
| | - Pablo Vargas
- Biodiversity and Conservation, Real Jardín Botánico, 28014 Madrid, Spain
| | - Mario Fernández-Mazuecos
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Calle Darwin 2, 28049 Madrid, Spain; Centro de Investigación en Biodiversidad y Cambio Global, Universidad Autónoma de Madrid (CIBC-UAM), Calle Darwin 2, 28049 Madrid, Spain
| | - Julia López-Delgado
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK
| | - Oliver White
- Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Martin Stervander
- Bird Group, Natural History Museum, Akeman Street, Tring, Hertfordshire HP23 6AP, UK
| | - Anthony J Geneva
- Department of Biology and Center for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA
| | - Juan Ernesto Guevara Andino
- Grupo de Investigación en Biodiversidad Medio Ambiente y Salud (BIOMAS), Universidad de las Américas, Quito, Ecuador
| | - Joana Isabel Meier
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - Lizzie Roeble
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, The Netherlands; Groningen Institute for Evolutionary Life Sciences, University of Groningen, Box 11103, 9700, 5 CC Groningen, The Netherlands
| | - Baptiste Brée
- Université de Pau et des Pays de l'Adour (UPPA), Energy Environment Solutions (E2S), Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Analytiques et de Physico-Chimie pour l'Environnement et les Matériaux (IPREM), 64000 Pau, France
| | - Jairo Patiño
- Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Calle Astrofísico Francisco Sánchez 3, 38206 La Laguna, Tenerife, Canary Islands, 38206, Spain
| | - Juan M Guayasamin
- Laboratorio de Biología Evolutiva, Instituto Biósfera, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Calle Diego de Robles y Avenida Pampite, Cumbayá, 170901 Quito, Ecuador; Galapagos Science Center, Universidad San Francisco de Quito (USFQ) and University of North Carolina (UNC) at Chapel Hill, San Cristobal, Galapagos, Ecuador
| | - María de Lourdes Torres
- Laboratorio de Biotecnología Vegetal, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Calle Diego de Robles y Avenida Pampite, Cumbayá, Quito, Ecuador; Galapagos Science Center, Universidad San Francisco de Quito (USFQ) and University of North Carolina (UNC) at Chapel Hill, San Cristobal, Galapagos, Ecuador
| | - Hugo Valdebenito
- Galapagos Science Center, Universidad San Francisco de Quito (USFQ) and University of North Carolina (UNC) at Chapel Hill, San Cristobal, Galapagos, Ecuador; Herbarium of Economic Botany of Ecuador (Herabario QUSF), Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Calle Diego de Robles y Avenida Pampite, Cumbayá, Quito, Ecuador
| | | | - Jaime A Chaves
- Department of Biology, San Francisco State University, San Francisco, CA 94132, USA; Laboratorio de Biología Evolutiva, Instituto Biósfera, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Calle Diego de Robles y Avenida Pampite, Cumbayá, 170901 Quito, Ecuador
| | - Patricia Jaramillo Díaz
- Estación Científica Charles Darwin, Fundación Charles Darwin, Santa Cruz, Galápagos, Ecuador; Department of Botany and Plant Physiology, University of Málaga, Málaga, Spain
| | - Luis Valente
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, The Netherlands; Groningen Institute for Evolutionary Life Sciences, University of Groningen, Box 11103, 9700, 5 CC Groningen, The Netherlands
| | - Matthew L Knope
- Department of Biology, University of Hawai'i at Hilo, 200 West Kawili Street, Hilo, 96720, HI, USA
| | - Jonathan P Price
- Department of Biology, University of Hawai'i at Hilo, 200 West Kawili Street, Hilo, 96720, HI, USA
| | - Loren H Rieseberg
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada
| | - Bruce G Baldwin
- Jepson Herbarium and Department of Integrative Biology, 1001 Valley Life Sciences Building 2465, University of California, Berkeley, CA 94720-2465, USA
| | - Brent C Emerson
- Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna, Spain
| | - Gonzalo Rivas-Torres
- Estación Científica Charles Darwin, Fundación Charles Darwin, Santa Cruz, Galápagos, Ecuador; Estación de Biodiversidad Tiputini, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito (USFQ), Quito, Ecuador
| | - Rosemary Gillespie
- Department of Environmental Science, Policy and Management, University of California, Berkeley, Berkeley, CA, USA
| | - Michael D Martin
- Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
| |
Collapse
|
28
|
Lanuza JB, Allen-Perkins A, Bartomeus I. The non-random assembly of network motifs in plant-pollinator networks. J Anim Ecol 2023; 92:760-773. [PMID: 36700304 DOI: 10.1111/1365-2656.13889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Accepted: 01/23/2023] [Indexed: 01/27/2023]
Abstract
Ecological processes leave distinct structural imprints on the species interactions that shape the topology of animal-plant mutualistic networks. Detecting how direct and indirect interactions between animals and plants are organised is not trivial since they go beyond pairwise interactions, but may get blurred when considering global network descriptors. Recent work has shown that the meso-scale, the intermediate level of network complexity between the species and the global network, can capture this important information. The meso-scale describes network subgraphs representing patterns of direct and indirect interactions between a small number of species, and when these network subgraphs differ statistically from a benchmark, they are often referred to as 'network motifs'. Although motifs can capture relevant ecological information of species interactions, they remain overlooked in natural plant-pollinator networks. By exploring 60 empirical plant-pollinator networks from 18 different studies with wide geographical coverage, we show that some network subgraphs are consistently under- or over-represented, suggesting the presence of worldwide network motifs in plant-pollinator networks. In addition, we found a higher proportion of densely connected network subgraphs that, based on previous findings, could reflect that species relative abundances are the main driver shaping the structure of the meso-scale on plant-pollinator communities. Moreover, we found that distinct subgraph positions describing species ecological roles (e.g. generalisation and number of indirect interactions) are occupied by different groups of animal and plant species representing their main life-history strategies (i.e. functional groups). For instance, we found that the functional group of 'bees' was over-represented in subgraph positions with a lower number of indirect interactions in contrast to the rest of floral visitors groups. Finally, we show that the observed functional group combinations within a subgraph cannot be retrieved from their expected probabilities (i.e. joint probability distributions), indicating that plant and floral visitor associations within subgraphs are not random either. Our results highlight the presence of common network motifs in plant-pollinator communities that are formed by a non-random association of plants and floral visitors functional groups.
Collapse
Affiliation(s)
- Jose B Lanuza
- School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia.,Estación Biológica de Doñana (EBD-CSIC), Seville, Spain
| | - Alfonso Allen-Perkins
- Estación Biológica de Doñana (EBD-CSIC), Seville, Spain.,Departamento de Ingeniería Eléctrica, Electrónica, Automática y Física Aplicada, ETSIDI, Universidad Politécnica de Madrid, Madrid, Spain
| | | |
Collapse
|
29
|
Deep mtDNA Sequence Divergences and Possible Species Radiation of Whip Spiders (Arachnida, Amblypygi, Phrynidae, Phrynus/Paraphrynus) among Caribbean Oceanic and Cave Islands. TAXONOMY 2023. [DOI: 10.3390/taxonomy3010011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]
Abstract
Islands—whether classic oceanic islands or habitat islands such as isolated thermal vents, mountain tops, or caves—often promote the diversification of lineages that colonize them. We examined CO1 mtDNA sequence divergences within the tailless whip spider genus Phrynus Lamarck, 1809 (Amblypygi: Phrynidae) among oceanic islands and among cave ’islands´ distributed across the Caribbean archipelago and on the continental mainland. The significance of this study lies in the extensive taxon sampling of a supposedly depauperate lineage (considering its age), over a large proportion of its geographical range, and the discovery of deep mtDNA sequence divergences. We sampled thousands of specimens—and sequenced 544, including six outgroup species—across 173 localities on 17 islands (135 localities) and five countries on the North to South American mainland (38 localities), including a total of 63 caves. Classical taxonomy identified ten named Phrynus and two Paraphrynus Moreno, 1940 species. Paraphrynus seems to be paraphyletic and nested in Phrynus. Uncorrected genetic distances within named species and among morphological species ranged up to 15% and 19%, respectively. Geographic distances explained a significant portion of genetic distances on islands (19%, among both subterranean and epigean specimens), and for epigean specimens on the mainland (27%). Species delimitation analyses indicated that the 12 named species harbored from 66 to well over 100 putative species. The highest number of species was indicated by the GMYC method (114 species) while the Bayesian Poisson tree processes (bPTP) and the BP&P relaying on the Markov chain Monte Carlo Bayesian Phylogenetic model estimated an upper level of 110 species. On the other hand, the recently recommended and relatively conservative distance-based (phylogeny free) ASAP model has the greatest support for 73 species. In either case, nearly all putative species are tightly limited to a single locality, often a small cave system, and sometimes to the surrounding epigean area. Caribbean Phrynus diversity has likely been vastly underestimated, likely due to both morphological crypsis and the ignorance of Caribbean cave fauna. Although mtDNA sequences can suggest species limits, nuclear DNA sequencing and detailed morphological research are necessary to corroborate them and explore whether this phenomenon constitutes species radiation or perhaps just mtDNA divergences as a consequence of, for example, stationary females and actively dispersing males.
Collapse
|
30
|
Bruschini C, Edwards ED, Talavera G, Vaurasi VD, Latu GF, Dapporto L. A complete
COI
library of Samoan butterflies reveals layers of endemic diversity on oceanic islands. ZOOL SCR 2023. [DOI: 10.1111/zsc.12588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Affiliation(s)
- Claudia Bruschini
- ZEN Lab, Dipartimento di Biologia Università degli Studi di Firenze Sesto Fiorentino Italia
| | - Eric D. Edwards
- Department of Conservation Conservation House Wellington New Zealand
| | - Gerard Talavera
- Institut Botànic de Barcelona (IBB) CSIC‐Ajuntament de Barcelona Barcelona Spain
| | - Varea D. Vaurasi
- Faculty of Science, National University of Samoa To'omatagi Samoa
| | | | - Leonardo Dapporto
- ZEN Lab, Dipartimento di Biologia Università degli Studi di Firenze Sesto Fiorentino Italia
| |
Collapse
|
31
|
Fiorentino G, Lattke J, Troya A, Sosiak C, Dong M, Barden P. Deep time extinction of largest insular ant predators and the first fossil Neoponera (Formicidae: Ponerinae) from Miocene age Dominican amber. BMC Biol 2023; 21:26. [PMID: 36750946 PMCID: PMC9906935 DOI: 10.1186/s12915-022-01488-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 11/30/2022] [Indexed: 02/09/2023] Open
Abstract
BACKGROUND Ponerine ants are almost exclusively predatory and comprise many of the largest known ant species. Within this clade, the genus Neoponera is among the most conspicuous Neotropical predators. We describe the first fossil member of this lineage: a worker preserved in Miocene-age Dominican amber from Hispaniola. RESULTS Neoponera vejestoria sp. nov. demonstrates a clear case of local extinction-there are no known extant Neoponera species in the Greater Antilles. The species is attributable to an extant and well-defined species group in the genus, which suggests the group is older than previously estimated. Through CT scan reconstruction and linear morphometrics, we reconstruct the morphospace of extant and fossil ants to evaluate the history and evolution of predatory taxa in this island system. CONCLUSIONS The fossil attests to a shift in insular ecological community structure since the Miocene. The largest predatory taxa have undergone extinction on the island, but their extant relatives persist throughout the Neotropics. Neoponera vejestoria sp. nov. is larger than all other predatory ant workers known from Hispaniola, extant or extinct. Our results empirically demonstrate the loss of a functional niche associated with body size, which is a trait long hypothesized to be related to extinction risk.
Collapse
Affiliation(s)
- Gianpiero Fiorentino
- Federated Department of Biological Sciences, New Jersey Institute of Technology, Newark, USA.
| | - John Lattke
- grid.20736.300000 0001 1941 472XDepartamento de Zoologia, Universidade Federal Do Paraná, Curitiba, Brazil
| | - Adrian Troya
- grid.440857.a0000 0004 0485 2489Departamento de Biología, Escuela Politécnica Nacional, Quito, Ecuador
| | - Christine Sosiak
- grid.260896.30000 0001 2166 4955Federated Department of Biological Sciences, New Jersey Institute of Technology, Newark, USA
| | - Minsoo Dong
- grid.412010.60000 0001 0707 9039Applied Biology Program, Division of Bio-Resource Sciences, Kangwon National University, Chuncheon, South Korea
| | - Phillip Barden
- grid.260896.30000 0001 2166 4955Federated Department of Biological Sciences, New Jersey Institute of Technology, Newark, USA ,grid.241963.b0000 0001 2152 1081Division of Invertebrate Zoology, American Museum of Natural History, New York City, USA
| |
Collapse
|
32
|
The Importance of Including Spatial Autocorrelation When Modelling Species Richness in Archipelagos: A Bayesian Approach. DIVERSITY 2023. [DOI: 10.3390/d15020127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
One of the aims of island biogeography theory is to explain the number of species in an archipelago. Traditionally, the variables used to explain the species richness on an island are its area and distance to the mainland. However, increasing evidence suggests that accounting for other variables is essential for better estimates. In particular, the distance between islands should play a role in determining species richness. This work uses a Bayesian framework using Gaussian processes to assess whether distance to neighbouring islands (spatial autocorrelation) can better explain arthropod species richness patterns in the Azores Archipelago and in the Canary Islands. This method is flexible and allows the inclusion of other variables, such as maximum altitude above sea level (elevation). The results show that accounting for spatial autocorrelation provides the best results for both archipelagos, but overall, spatial autocorrelation seems to be more important in the Canary archipelago. Similarly, elevation plays a more important role in determining species richness in the Canary Islands. We recommend that spatial autocorrelation should always be considered when modelling an archipelago’s species richness.
Collapse
|
33
|
Belluardo F, Jesus Muñoz-Pajares A, Miralles A, Silvestro D, Cocca W, Mihaja Ratsoavina F, Villa A, Roberts SH, Mezzasalma M, Zizka A, Antonelli A, Crottini A. Slow and steady wins the race: Diversification rate is independent from body size and lifestyle in Malagasy skinks (Squamata: Scincidae: Scincinae). Mol Phylogenet Evol 2023; 178:107635. [PMID: 36208694 DOI: 10.1016/j.ympev.2022.107635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 09/18/2022] [Accepted: 09/29/2022] [Indexed: 11/07/2022]
Abstract
Most of the unique and diverse vertebrate fauna that inhabits Madagascar derives from in situ diversification from colonisers that reached this continental island through overseas dispersal. The endemic Malagasy Scincinae lizards are amongst the most species-rich squamate groups on the island. They colonised all bioclimatic zones and display many ecomorphological adaptations to a fossorial (burrowing) lifestyle. Here we propose a new phylogenetic hypothesis for their diversification based on the largest taxon sampling so far compiled for this group. We estimated divergence times and investigated several aspects of their diversification (diversification rate, body size and fossorial lifestyle evolution, and biogeography). We found that diversification rate was constant throughout most of the evolutionary history of the group, but decreased over the last 6-4 million years and independently from body size and fossorial lifestyle evolution. Fossoriality has evolved from fully quadrupedal ancestors at least five times independently, which demonstrates that even complex morphological syndromes - in this case involving traits such as limb regression, body elongation, modification of cephalic scalation, depigmentation, and eyes and ear-opening regression - can evolve repeatedly and independently given enough time and eco-evolutionary advantages. Initial diversification of the group likely occurred in forests, and the divergence of sand-swimmer genera around 20 Ma appears linked to a period of aridification. Our results show that the large phenotypic variability of Malagasy Scincinae has not influenced diversification rate and that their rich species diversity results from a constant accumulation of lineages through time. By compiling large geographic and trait-related datasets together with the computation of a new time tree for the group, our study contributes important insights on the diversification of Malagasy vertebrates.
Collapse
Affiliation(s)
- Francesco Belluardo
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Praça Gomes Teixeira, 4099-002 Porto, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal.
| | - A Jesus Muñoz-Pajares
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; Departamento de Genética, Universidad de Granada, Avenida de la Fuente Nueva S/N, 18071 Granada, Spain
| | - Aurélien Miralles
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Daniele Silvestro
- Department of Biology, University of Fribourg and Swiss Institute of Bioinformatics, Ch. du Musée 10, 1700 Fribourg, Switzerland; Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden; Gothenburg Global Biodiversity Centre, Box 461, 405 30 Göteborg, Sweden
| | - Walter Cocca
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Praça Gomes Teixeira, 4099-002 Porto, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal
| | - Fanomezana Mihaja Ratsoavina
- Mention Zoologie et Biodiversité Animale, Domaine Sciences et Technologies, Université d'Antananarivo, B.P. 906, 101 Antananarivo, Madagascar
| | - Andrea Villa
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, 08193 Cerdanyola del Vallès, Spain
| | - Sam Hyde Roberts
- SEED Madagascar, Unit 7, Beethoven Street 1A, W10 4LG London, UK; Oxford Brookes University, Headington Campus, 0X3 0BP Oxford, UK; Operation Wallacea, Wallace House, Old Bolingbroke, PE23 4EX Spilsby, UK
| | - Marcello Mezzasalma
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; Department of Biology, Ecology and Earth Sciences, University of Calabria, Via P. Bucci 4/B, 87036 Rende, Italy
| | - Alexander Zizka
- Department of Biology, Philipps-University Marburg, Karl-von-Frisch-Straße 8, 35043 Marburg, Germany
| | - Alexandre Antonelli
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden; Gothenburg Global Biodiversity Centre, Box 461, 405 30 Göteborg, Sweden; Royal Botanic Gardens, Kew, TW9 3AE Richmond, UK; Department of Biology, University of Oxford, South Parks Road, OX1 3RB Oxford, UK
| | - Angelica Crottini
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal; Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Praça Gomes Teixeira, 4099-002 Porto, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Rua Padre Armando Quintas, 4485-661 Vairão, Portugal
| |
Collapse
|
34
|
Simberloff D. In Memoriam. Am Nat 2022; 200:627-633. [DOI: 10.1086/721257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
35
|
Ferrante M, Lövei GL, Nunes R, Monjardino P, Lamelas-López L, Möller D, Soares AO, Borges PA. Gains and losses in ecosystem services and disservices after converting native forest to agricultural land on an oceanic island. Basic Appl Ecol 2022. [DOI: 10.1016/j.baae.2022.11.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
36
|
Jackson N, Littleford-Colquhoun BL, Strickland K, Class B, Frere CH. Selection in the city: Rapid and fine-scale evolution of urban eastern water dragons. Evolution 2022; 76:2302-2314. [PMID: 35971751 DOI: 10.1111/evo.14596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 06/27/2022] [Accepted: 07/18/2022] [Indexed: 01/22/2023]
Abstract
Oceanic archipelagos have long been treated as a Petri dish for studies of evolutionary and ecological processes. Like archipelagos, cities exhibit similar patterns and processes, such as the rapid phenotypic divergence of a species between urban and nonurban environments. However, on a local scale, cities can be highly heterogenous, where geographically close populations can experience dramatically different environmental conditions. Nevertheless, we are yet to understand the evolutionary and ecological implications for populations spread across a heterogenous cityscape. To address this, we compared neutral genetic divergence to quantitative trait divergence within three native riparian and four city park populations of an iconic urban adapter, the eastern water dragon. We demonstrated that selection is likely acting to drive divergence of snout-vent length and jaw width across native riparian populations that are geographically isolated and across city park populations that are geographically close yet isolated by urbanization. City park populations as close as 0.9 km exhibited signs of selection-driven divergence to the same extent as native riparian populations isolated by up to 114.5 km. These findings suggest that local adaptation may be occurring over exceptionally small geographic and temporal scales within a single metropolis, demonstrating that city parks can act as archipelagos for the study of rapid evolution.
Collapse
Affiliation(s)
- Nicola Jackson
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, QLD, 4556, Australia
| | - Bethan L Littleford-Colquhoun
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, QLD, 4556, Australia.,Department of Ecology, Evolution, and Organismal Biology, Brown University, Providence, Rhode Island, 02912, US.,Institute at Brown for Environment and Society, Brown University, Providence, Rhode Island, 02912, US
| | - Kasha Strickland
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, QLD, 4556, Australia.,Department of Aquaculture and Fish Biology, Hólar University, Sauðarkrókur, 550, Iceland
| | - Barbara Class
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, QLD, 4556, Australia
| | - Celine H Frere
- Global Change Ecology Research Group, University of the Sunshine Coast, Sippy Downs, QLD, 4556, Australia.,School of Biological Sciences, University of Queensland, St. Lucia, QLD, 4072, Australia
| |
Collapse
|
37
|
Genomic basis of insularity and ecological divergence in barn owls (Tyto alba) of the Canary Islands. Heredity (Edinb) 2022; 129:281-294. [PMID: 36175501 PMCID: PMC9613907 DOI: 10.1038/s41437-022-00562-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Revised: 09/10/2022] [Accepted: 09/12/2022] [Indexed: 11/14/2022] Open
Abstract
Islands, and the particular organisms that populate them, have long fascinated biologists. Due to their isolation, islands offer unique opportunities to study the effect of neutral and adaptive mechanisms in determining genomic and phenotypical divergence. In the Canary Islands, an archipelago rich in endemics, the barn owl (Tyto alba), present in all the islands, is thought to have diverged into a subspecies (T. a. gracilirostris) on the eastern ones, Fuerteventura and Lanzarote. Taking advantage of 40 whole-genomes and modern population genomics tools, we provide the first look at the origin and genetic makeup of barn owls of this archipelago. We show that the Canaries hold diverse, long-standing and monophyletic populations with a neat distinction of gene pools from the different islands. Using a new method, less sensitive to structure than classical FST, to detect regions involved in local adaptation to insular environments, we identified a haplotype-like region likely under selection in all Canaries individuals and genes in this region suggest morphological adaptations to insularity. In the eastern islands, where the subspecies is present, genomic traces of selection pinpoint signs of adapted body proportions and blood pressure, consistent with the smaller size of this population living in a hot arid climate. In turn, genomic regions under selection in the western barn owls from Tenerife showed an enrichment in genes linked to hypoxia, a potential response to inhabiting a small island with a marked altitudinal gradient. Our results illustrate the interplay of neutral and adaptive forces in shaping divergence and early onset speciation.
Collapse
|
38
|
Baxter-Gilbert J, Riley JL, Wagener C, Baider C, Florens FBV, Kowalski P, Campbell M, Measey J. Island Hopping through Urban Filters: Anthropogenic Habitats and Colonized Landscapes Alter Morphological and Performance Traits of an Invasive Amphibian. Animals (Basel) 2022; 12:ani12192549. [PMID: 36230289 PMCID: PMC9559409 DOI: 10.3390/ani12192549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 07/28/2022] [Accepted: 09/19/2022] [Indexed: 11/17/2022] Open
Abstract
Simple Summary Invasive species are common on islands and, increasingly so, in urban ecosystems. They can pose serious ecological and socioeconomic impacts, making research on how invasions are promoted critically important. We examined different traits of guttural toads (Sclerophrys gutturalis) in their natural and invasive ranges (both natural and urban populations in native and invasive sites) to understand if divergences in habitats in their native range could increase their invasive potential. We found that invasive island populations on Mauritius and Réunion (Indian Ocean) have reduced body sizes, proportionally shorter limbs, slower escape speeds, and reduced endurance capacities compared to the native South African populations. In short, these changes occurred post-invasion. However, increase climbing ability was seen within the urban-native toads, a trait maintained within the two invasions, suggesting that it may have been an advantageous prior adaptation. Becoming climbers may have benefited the toad during colonization, increasing navigation and hunting ability within the urbanized areas where they were introduced, prior to their spread into natural areas. This change in climbing performance is an example of how the urbanization of native taxa may be increasing the ability of certain species to become better invaders should they be introduced outside their native range. Abstract A prominent feature of the modern era is the increasing spread of invasive species, particularly within island and urban ecosystems, and these occurrences provide valuable natural experiments by which evolutionary and invasion hypotheses can be tested. In this study, we used the invasion route of guttural toads (Sclerophrys gutturalis) from natural-native and urban-native populations (Durban, South Africa) to their urban-invasive and natural-invasive populations (Mauritius and Réunion) to determine whether phenotypic changes that arose once the toads became urbanized in their native range have increased their invasive potential before they were transported (i.e., prior adaptation) or whether the observed changes are unique to the invasive populations. This urban/natural by native/invasive gradient allowed us to examine differences in guttural toad morphology (i.e., body size, hindlimb, and hindfoot length) and performance capacity (i.e., escape speed, endurance, and climbing ability) along their invasion route. Our findings indicate that invasive island populations have reduced body sizes, shorter limbs in relation to snout-vent length, decreased escape speeds, and decreased endurance capacities that are distinct from the native mainland populations (i.e., invasion-derived change). Thus, these characteristics did not likely arise directly from a pre-transport anthropogenic “filter” (i.e., urban-derived change). Climbing ability, however, did appear to originate within the urban-native range and was maintained within the invasive populations, thereby suggesting it may have been a prior adaptation that provided this species with an advantage during its establishment in urban areas and spread into natural forests. We discuss how this shift in climbing performance may be ecologically related to the success of urban and invasive guttural toad populations, as well as how it may have impacted other island-derived morphological and performance phenotypes.
Collapse
Affiliation(s)
- James Baxter-Gilbert
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch 7405, South Africa
- Department of Biology, Mount Allison University, Sackville, NB E4L 1E2, Canada
- Correspondence:
| | - Julia L. Riley
- Department of Biology, Mount Allison University, Sackville, NB E4L 1E2, Canada
- Department of Botany and Zoology, Stellenbosch University, Stellenbosch 7405, South Africa
- Department of Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada
| | - Carla Wagener
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch 7405, South Africa
- Department of Zoology, University of Oxford, Oxford OX1 4BH, UK
| | - Cláudia Baider
- The Mauritius Herbarium, Agricultural Services, Ministry of Agro-Industry and Food Security, Réduit 80835, Mauritius
| | - F. B. Vincent Florens
- Tropical Island Biodiversity, Ecology and Conservation Pole of Research, Faculty of Science, University of Mauritius, Réduit 80837, Mauritius
| | | | - May Campbell
- Grow Learning Support, Ballito 4391, South Africa
| | - John Measey
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch 7405, South Africa
| |
Collapse
|
39
|
Abstract
Caves are home to unique and fragile biotas with high levels of endemism. However, little is known about how the biotic colonization of caves has developed over time, especially in caves from middle and low latitudes. Subtropical East Asia holds the world's largest karst landform with numerous ancient caves, which harbor a high diversity of cave-dwelling organisms and are regarded as a biodiversity hotspot. Here, we assess the temporal dynamics of biotic colonization of subtropical East Asian caves through a multi-taxon analysis with representatives of green plants, animals, and fungi. We then investigate the consequences of paleonviromental changes on the colonization dynamics of these caves in combination with reconstructions of vegetation, temperature, and precipitation. We discover that 88% of cave colonization events occurred after the Oligocene-Miocene boundary, and organisms from the surrounding forest were a major source for subtropical East Asian cave biodiversity. Biotic colonization of subtropical East Asian caves during the Neogene was subject to periods of acceleration and decrease, in conjunction with large-scale, seasonal climatic changes and evolution of local forests. This study highlights the long-term evolutionary interaction between surface and cave biotas; our climate-vegetation-relict model proposed for the subtropical East Asian cave biota may help explain the evolutionary origins of other mid-latitude subterranean biotas.
Collapse
|
40
|
Neto GDSF, Benchimol M, Carneiro FM, Baccaro FB. Island size predicts mammal diversity in insular environments, except for land‐bridge islands. Biotropica 2022. [DOI: 10.1111/btp.13147] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
| | - Maíra Benchimol
- Laboratório de Ecologia Aplicada à Conservação Universidade Estadual de Santa Cruz Ilhéus Brazil
| | - Fernanda Melo Carneiro
- Instituto Acadêmico de Ciências da Saúde e Biológicas Universidade Estadual de Goiás (UEG), Campus Metropolitano, Unidade Goiânia‐Laranjeiras Goiânia Goias Brazil
| | - Fabricio Beggiato Baccaro
- Departamento de Biologia, Instituto de Ciências Biológicas Universidade Federal do Amazonas Manaus Brazil
| |
Collapse
|
41
|
Zhang VY, Gagorik CN, Brenner LJ, Boser CL, Theimer TC, Buck CL. Interspecific Asymmetries in Behavioral Plasticity Drive Seasonal Patterns of Temporal Niche Partitioning in an Island Carnivore Community. Integr Comp Biol 2022; 62:998-1011. [PMID: 35803500 DOI: 10.1093/icb/icac113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/08/2022] [Accepted: 06/30/2022] [Indexed: 11/12/2022] Open
Abstract
Animals vary considerably in the amount of behavioral plasticity they exhibit in daily activity timing and temporal niche switching. It is not well understood how environmental factors drive changes in temporal activity or how interspecific differences in the plasticity of activity timing ultimately manifest in free-living animals. Here, we investigated the temporal structure and organization of activity patterns of two insular mammalian carnivores living in sympatry, the island fox (Urocyon littoralis) and island spotted skunk (Spilogale gracilis amphiala). Using collar-mounted accelerometers, we assessed the plasticity of behavioral activity rhythms in foxes and skunks by investigating how environmental factors drive the distribution of locomotor activity across the day and year, and subsequently examined the dynamics of temporal niche overlap between the two species. We documented that foxes express phenotypic plasticity in daily activity timing across the year, ranging from nocturnal to diurnal to crepuscular rhythms depending on individual and time of year. Most notably, foxes increased the proportion of daytime activity as seasonal temperatures decreased. Overall, activity patterns of foxes were consistent with the circadian thermoenergetics hypothesis, which posits that animals that switch their patterns of activity do so to coincide with the most energetically favorable time of day. In contrast to foxes, skunks exhibited little behavioral plasticity, appearing strictly nocturnal across the year. While the duration of skunk activity bouts increased with the duration of night, timing of activity onset and offset extended into daytime hours during summer when the duration of darkness was shortest. Analysis of temporal niche overlap between foxes and skunks suggested that niche overlap was highest during summer and lowest during winter and was dictated primarily by temporal niche switching in foxes, rather than skunks. Collectively, our results highlight how interspecific asymmetries in behavioral plasticity drive dynamic patterns of temporal niche overlap within an island carnivore community.
Collapse
Affiliation(s)
- Victor Y Zhang
- Department of Biology, University of Washington, Seattle, WA 98195, USA
| | | | | | | | - Tad C Theimer
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA
| | - C Loren Buck
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA
| |
Collapse
|
42
|
Dimitriou AC, Antoniou A, Alexiou I, Poulakakis N, Parmakelis A, Sfenthourakis S. Diversification within an oceanic Mediterranean island: Insights from a terrestrial isopod. Mol Phylogenet Evol 2022; 175:107585. [PMID: 35810970 DOI: 10.1016/j.ympev.2022.107585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 05/27/2022] [Accepted: 06/06/2022] [Indexed: 11/16/2022]
Abstract
Understanding intra-island patterns of evolutionary divergence, including cases of cryptic diversity, is a crucial step towards deciphering speciation processes. Cyprus is an oceanic island isolated for at least 5.3 Mya from surrounding continental regions, while it remains unclear whether it was ever connected to the mainland, even during the Messinian Salinity Crisis. The terrestrial isopod species Armadillo officinalis, that is widespread across the Mediterranean, offers the opportunity to explore intra-island divergence patterns that might exhibit geographical structure related also to the region's known paleogeography. Genome-wide ddRADseq, as well as Sanger sequencing for four mitochondrial and three nuclear loci data were generated for this purpose. In total, 71 populations from Cyprus, neighbouring continental sites, i.e., Israel, Lebanon and Turkey, and other Mediterranean regions, i.e. Greece, Italy, and Tunisia, were included in the analysis. Phylogenetic reconstructions and population structure analyses support the existence of at least six genetically discrete groups across the study area. Five of these distinct genetic clades occur on Cyprus, four of which are endemic to the island and one is widely distributed along the circum-Mediterranean countries. The sixth clade is distributed in Israel. The closest evolutionary relationship of endemic Cypriot populations is with those from Israel, while the evolutionary clade that is present in countries all around the Mediterranean is very shallow. Cladochronological analyses date the origin of the species on the island at ∼6 Mya. Estimated f4 and D statistics as well as FST values indicate the genetic isolation between the populations sampled from Cyprus and surrounding continental areas, while there is evident gene flow among populations within the island. Species delimitation and population genetic metrics support the existence of three distinct taxonomic units across the study area, two of which occur on the island and correspond to the endemic clade and the widespread circum-Mediterranean one, respectively, while the third corresponds to Israel's clade. The islands' paleogeographic history and recent human activities seem to have shaped current patterns of genetic diversity in this group of species.
Collapse
Affiliation(s)
- Andreas C Dimitriou
- Department of Biological Sciences, University of Cyprus, University Campus, 2109 Aglantzia, Nicosia, Cyprus.
| | - Aglaia Antoniou
- Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Gournes Pediados, Irakleio, P.O. Box 2214, 71003 Crete, Greece
| | - Ioannis Alexiou
- Department of Biology, National and Kapodistrian University of Athens, Athens, Greece
| | - Nikos Poulakakis
- Natural History Museum of Crete, School of Sciences and Engineering, University of Crete, Knosos Avenue, Irakleio 71409, Greece; Department of Biology, School of Sciences and Engineering, University of Crete, Vassilika Vouton, Irakleio 70013, Greece
| | - Aristeidis Parmakelis
- Department of Biology, National and Kapodistrian University of Athens, Athens, Greece
| | - Spyros Sfenthourakis
- Department of Biological Sciences, University of Cyprus, University Campus, 2109 Aglantzia, Nicosia, Cyprus
| |
Collapse
|
43
|
Cermeño P, García-Comas C, Pohl A, Williams S, Benton MJ, Chaudhary C, Le Gland G, Müller RD, Ridgwell A, Vallina SM. Post-extinction recovery of the Phanerozoic oceans and biodiversity hotspots. Nature 2022; 607:507-511. [PMID: 35831505 PMCID: PMC9300466 DOI: 10.1038/s41586-022-04932-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Accepted: 06/06/2022] [Indexed: 11/23/2022]
Abstract
The fossil record of marine invertebrates has long fuelled the debate as to whether or not there are limits to global diversity in the sea1-5. Ecological theory states that, as diversity grows and ecological niches are filled, the strengthening of biological interactions imposes limits on diversity6,7. However, the extent to which biological interactions have constrained the growth of diversity over evolutionary time remains an open question1-5,8-11. Here we present a regional diversification model that reproduces the main Phanerozoic eon trends in the global diversity of marine invertebrates after imposing mass extinctions. We find that the dynamics of global diversity are best described by a diversification model that operates widely within the exponential growth regime of a logistic function. A spatially resolved analysis of the ratio of diversity to carrying capacity reveals that less than 2% of the global flooded continental area throughout the Phanerozoic exhibits diversity levels approaching ecological saturation. We attribute the overall increase in global diversity during the Late Mesozoic and Cenozoic eras to the development of diversity hotspots under prolonged conditions of Earth system stability and maximum continental fragmentation. We call this the 'diversity hotspots hypothesis', which we propose as a non-mutually exclusive alternative to the hypothesis that the Mesozoic marine revolution led this macroevolutionary trend12,13.
Collapse
Affiliation(s)
- Pedro Cermeño
- Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain.
| | - Carmen García-Comas
- Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain.
| | - Alexandre Pohl
- Department of Earth and Planetary Sciences, University of California, Riverside, Riverside, CA, USA
- Biogéosciences, UMR 6282, UBFC/CNRS, Université Bourgogne Franche-Comté, Dijon, France
| | - Simon Williams
- State Key Laboratory of Continental Dynamics, Department of Geology, Northwest University, Xi'an, China
- EarthByte Group, School of Geosciences, University of Sydney, Sydney, New South Wales, Australia
| | | | - Chhaya Chaudhary
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Guillaume Le Gland
- Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain
| | - R Dietmar Müller
- EarthByte Group, School of Geosciences, University of Sydney, Sydney, New South Wales, Australia
| | - Andy Ridgwell
- Department of Earth and Planetary Sciences, University of California, Riverside, Riverside, CA, USA
| | - Sergio M Vallina
- Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas, Gijón, Spain
| |
Collapse
|
44
|
Wyckhuys KAG, Sanchez Garcia FJ, Santos AMC, Canal NA, Furlong MJ, Melo MC, GC YD, Pozsgai G. Island and Mountain Ecosystems as Testbeds for Biological Control in the Anthropocene. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.912628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
For centuries, islands and mountains have incited the interest of naturalists, evolutionary biologists and ecologists. Islands have been the cradle for biogeography and speciation theories, while mountain ranges have informed how population adaptation to thermal floors shapes the distribution of species globally. Islands of varying size and mountains’ altitudinal ranges constitute unique “natural laboratories” where one can investigate the effects of species loss or global warming on ecosystem service delivery. Although invertebrate pollination or seed dispersal processes are steadily being examined, biological control research is lagging. While observations of a wider niche breadth among insect pollinators in small (i.e., species-poor) islands or at high (i.e., colder) altitudes likely also hold for biological control agents, such remains to be examined. In this Perspective piece, we draw on published datasets to show that island size alone does not explain biological control outcomes. Instead, one needs to account for species’ functional traits, habitat heterogeneity, host community make-up, phenology, site history or even anthropogenic forces. Meanwhile, data from mountain ranges show how parasitism rates of Noctuid moths and Tephritid fruit flies exhibit species- and context-dependent shifts with altitude. Nevertheless, future empirical work in mountain settings could clarify the thermal niche space of individual natural enemy taxa and overall thermal resilience of biological control. We further discuss how global databases can be screened, while ecological theories can be tested, and simulation models defined based upon observational or manipulative assays in either system. Doing so can yield unprecedented insights into the fate of biological control in the Anthropocene and inform ways to reinforce this vital ecosystem service under global environmental change scenarios.
Collapse
|
45
|
Ottaviani G, Méndez‐Castro FE, Conti L, Zelený D, Chytrý M, Doležal J, Jandová V, Altman J, Klimešová J. Sticking around: Plant persistence strategies on edaphic islands. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13586] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Gianluigi Ottaviani
- Institute of Botany The Czech Academy of Sciences Třeboň Czech Republic
- Department of Botany and Zoology Faculty of Science, Masaryk University Brno Czech Republic
| | | | - Luisa Conti
- Institute of Botany The Czech Academy of Sciences Třeboň Czech Republic
- Faculty of Environmental Sciences Czech University of Life Sciences Prague Czech Republic
| | - David Zelený
- Institute of Ecology and Evolutionary Biology National Taiwan University Taipei Taiwan
| | - Milan Chytrý
- Department of Botany and Zoology Faculty of Science, Masaryk University Brno Czech Republic
| | - Jiři Doležal
- Institute of Botany The Czech Academy of Sciences Třeboň Czech Republic
- Faculty of Science University of South Bohemia České Budějovice Czech Republic
| | - Veronika Jandová
- Institute of Botany The Czech Academy of Sciences Třeboň Czech Republic
- Faculty of Science University of South Bohemia České Budějovice Czech Republic
| | - Jan Altman
- Institute of Botany The Czech Academy of Sciences Třeboň Czech Republic
- Faculty of Forestry and Wood Sciences Czech University of Life Sciences Prague Czech Republic
| | - Jitka Klimešová
- Institute of Botany The Czech Academy of Sciences Třeboň Czech Republic
- Department of Botany Charles University Prague Faculty of Science, Charles University Prague Czech Republic
| |
Collapse
|
46
|
Andújar C, Arribas P, López H, Arjona Y, Pérez-Delgado A, Oromí P, Vogler AP, Emerson BC. Community assembly and metaphylogeography of soil biodiversity: insights from haplotype-level community DNA metabarcoding within an oceanic island. Mol Ecol 2022; 31:4078-4094. [PMID: 35665980 PMCID: PMC9544582 DOI: 10.1111/mec.16560] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 05/04/2022] [Accepted: 05/24/2022] [Indexed: 11/26/2022]
Abstract
Most of our understanding of island diversity comes from the study of aboveground systems, while the patterns and processes of diversification and community assembly for belowground biotas remain poorly understood. Here, we take advantage of a relatively young and dynamic oceanic island to advance our understanding of ecoevolutionary processes driving community assembly within soil mesofauna. Using whole organism community DNA (wocDNA) metabarcoding and the recently developed metaMATE pipeline, we have generated spatially explicit and reliable haplotype‐level DNA sequence data for soil mesofaunal assemblages sampled across the four main habitats within the island of Tenerife. Community ecological and metaphylogeographic analyses have been performed at multiple levels of genetic similarity, from haplotypes to species and supraspecific groupings. Broadly consistent patterns of local‐scale species richness across different insular habitats have been found, whereas local insular richness is lower than in continental settings. Our results reveal an important role for niche conservatism as a driver of insular community assembly of soil mesofauna, with only limited evidence for habitat shifts promoting diversification. Furthermore, support is found for a fundamental role of habitat in the assembly of soil mesofauna, where habitat specialism is mainly due to colonization and the establishment of preadapted species. Hierarchical patterns of distance decay at the community level and metaphylogeographical analyses support a pattern of geographic structuring over limited spatial scales, from the level of haplotypes through to species and lineages, as expected for taxa with strong dispersal limitations. Our results demonstrate the potential for wocDNA metabarcoding to advance our understanding of biodiversity.
Collapse
Affiliation(s)
- Carmelo Andújar
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Paula Arribas
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Heriberto López
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Yurena Arjona
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Antonio Pérez-Delgado
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain.,School of Doctoral and Postgraduate Studies, University of La Laguna, La Laguna Tenerife, Canary Islands, Spain
| | - Pedro Oromí
- Department of Animal Biology, Edaphology and Geology, University of La Laguna, La Laguna Tenerife, Canary Islands, Spain
| | - Alfried P Vogler
- Department of Life Sciences, Natural History Museum, Cromwell Road, London, UK.,Department of Life Sciences, Imperial College London Silwood Park Campus, Ascot, UK
| | - Brent C Emerson
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| |
Collapse
|
47
|
Suárez D, Arribas P, Jiménez-García E, Emerson BC. Dispersal ability and its consequences for population genetic differentiation and diversification. Proc Biol Sci 2022; 289:20220489. [PMID: 35582805 PMCID: PMC9115014 DOI: 10.1098/rspb.2022.0489] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Dispersal ability is known to influence geographical structuring of genetic variation within species, with a direct relationship between low vagility and population genetic structure, which can potentially give rise to allopatric speciation. However, our general understanding of the relationship between dispersal ability, population differentiation and lineage diversification is limited. To address this issue, we sampled mitochondrial DNA variation within lineages of beetles and spiders across the Canary Islands to explore the relationships between dispersal ability, differentiation within lineages and diversification. We found positive relationships between population genetic structure and diversification for both beetles and spiders. Comparisons between dispersive and non-dispersive lineages revealed significant differences for both lineage differentiation and diversification. For both taxa, non-dispersive lineages had stronger population genetic structure. Genus-level endemic species richness and proxies for diversification rate within genera were higher in non-dispersive taxa for both beetles and spiders. Comparisons of average and maximum node divergences within genera suggest that species turnover may be higher in non-dispersive genera. Our results reveal a model where dispersal limitation may shape the diversity of lineages across evolutionary timescales by positively influencing intraspecific and species diversity, moderated by higher extinction rates compared to more dispersive lineages.
Collapse
Affiliation(s)
- Daniel Suárez
- Island Ecology and Evolution Research Group, CSIC Institute of Natural Products and Agrobiology (IPNA-CSIC), C/Astrofísico Francisco Sánchez 3, La Laguna, Tenerife, Canary Islands 38206, Spain,School of Doctoral and Postgraduate Studies, University of La Laguna, 38200 La Laguna, Tenerife, Canary Islands, Spain
| | - Paula Arribas
- Island Ecology and Evolution Research Group, CSIC Institute of Natural Products and Agrobiology (IPNA-CSIC), C/Astrofísico Francisco Sánchez 3, La Laguna, Tenerife, Canary Islands 38206, Spain
| | - Eduardo Jiménez-García
- Island Ecology and Evolution Research Group, CSIC Institute of Natural Products and Agrobiology (IPNA-CSIC), C/Astrofísico Francisco Sánchez 3, La Laguna, Tenerife, Canary Islands 38206, Spain,School of Doctoral and Postgraduate Studies, University of La Laguna, 38200 La Laguna, Tenerife, Canary Islands, Spain
| | - Brent C. Emerson
- Island Ecology and Evolution Research Group, CSIC Institute of Natural Products and Agrobiology (IPNA-CSIC), C/Astrofísico Francisco Sánchez 3, La Laguna, Tenerife, Canary Islands 38206, Spain
| |
Collapse
|
48
|
Yamaguchi R. Intermediate dispersal hypothesis of species diversity: New insights. Ecol Res 2022. [DOI: 10.1111/1440-1703.12313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ryo Yamaguchi
- Department of Advanced Transdisciplinary Science Hokkaido University Sapporo Japan
| |
Collapse
|
49
|
Abstract
SignificanceGeography molds how species evolve in space. Strong geographical barriers to movement, for instance, both inhibit dispersal between regions and allow isolated populations to diverge as new species. Weak barriers, by contrast, permit species range expansion and persistence. These factors present a conundrum: How strong must a barrier be before between-region speciation outpaces dispersal? We designed a phylogenetic model of dispersal, extinction, and speciation that allows regional features to influence rates of biogeographic change and applied it to the neotropical radiation of Anolis lizards. Separation by water induces a threefold steeper barrier to movement than equivalent distances over land. Our model will help biologists detect relationships between evolutionary processes and the spatial contexts in which they operate.
Collapse
|
50
|
Dunn RR, Burger JR, Carlen EJ, Koltz AM, Light JE, Martin RA, Munshi-South J, Nichols LM, Vargo EL, Yitbarek S, Zhao Y, Cibrián-Jaramillo A. A Theory of City Biogeography and the Origin of Urban Species. FRONTIERS IN CONSERVATION SCIENCE 2022. [DOI: 10.3389/fcosc.2022.761449] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Many of the choices humans make with regard to infrastructure, urban planning and other phenomena have impacts that will last thousands of years. This can readily be seen in modern cities in which contemporary streets run along street grids that were laid out thousands of years prior or even in which ancient viaducts still play a role. However, rarely do evolutionary biologists explicitly consider the future of life likely to be associated with the decisions we are making today. Here, we consider the evolutionary future of species in cities with a focus on the origin of lineages and species. We do so by adjusting evolutionary predictions from the theory of island biogeography so as to correspond to the unique features of cities as islands. Specifically, the species endemic to cities tend to be associated with the gray habitats in cities. Those habitats tend to be dominated by human bodies, pet bodies and stored food. It is among such species where the origin of new lineages is most likely, although most research on evolution in cities has focused on green habitats. We conclude by considering a range of scenarios for the far future and their implications for the origin of lineages and species.
Collapse
|