Climate change and ocean acidification effects on seagrasses and marine macroalgae

C4-like metabolism and HCO3- use in submerged leaves of Ottelia cordata lacking Kranz anatomy at both low and high CO2 concentrations

To date, only a few submerged plants have been reported to perform C4 and CAM. Ottelia cordata is a heteroblastic aquatic plant developing both submerged and floating leaves throughout its life cycle. Previous research found that, besides HCO3- use, the submerged leaves of O. cordata can also perform C4 metabolism. However, it remains unclear how the HCO3- use or the C4 pathway, and the anatomical structure, respond to varying CO2 environments. Therefore, we examined the anatomical structures and carbon-concentrating mechanisms in O. cordata submerged leaves under high (HC) and low CO2 (LC) conditions. Our results revealed the leaf consists of an upper and lower layer of epidermal cells, separated by large air spaces and two layers of mesophyll cells, without the presence of Kranz anatomy. Both epidermal and mesophyll cells contained chloroplasts, but starch grains were larger in the mesophyll chloroplasts than in the epidermal cells. Additionally, the area of the upper epidermal cells, mesophyll cells, air spaces, chloroplast, and starch grains significantly increased under HC. Moreover, the ability to utilize HCO3- was stronger under LC. The activity of photosynthetic enzymes, kinetics of O2 evolution, and δ13C confirmed the C4 pathway under both HC and LC. However, the organic acid results indicated that CAM was not operational in either HC or LC. In summary, our findings suggested that the ability to use HCO3- and a C4-like metabolism may occur in the submerged leaves of O. cordata, despite the absence of Kranz anatomy, across both HC and LC environments.

Ocean acidification and global warming may favor blue carbon service in a Cymodocea nodosa community by modifying carbon metabolism and dissolved organic carbon fluxes

Ocean acidification (OA) and global warming (GW) drive a variety of responses in seagrasses that may modify their carbon metabolism, including the dissolved organic carbon (DOC) fluxes and the organic carbon stocks in upper sediments. In a 45-day full-factorial mesocosm experiment simulating forecasted CO2 and temperature increase in a Cymodocea nodosa community, we found that net community production (NCP) was higher under OA conditions, particularly when combined with warming (i.e., synergistic effect). Moreover, under OA conditions, an increase in aboveground biomass and photosynthetic shoot area was recorded. Interestingly, DOC fluxes were reduced when exposed to OA; however, an increase occurred when both factors acted together (i.e., antagonistic effect), which was attributable to increased DOC release by plants. Our results suggest that C. nodosa populations in temperate latitude may favor blue carbon service in future scenarios of OA and GW by increasing the NCP, the DOC export with lower labile:recalcitrant ratio, and accumulating more organic carbon in upper sediments. These findings offer additional arguments for the urgent need to protect and conserve this valuable ecosystem.

A field study of the molecular response of brown macroalgae to heavy metal exposure: An (epi)genetic approach

Our understanding of the relative contribution of genetic and epigenetic mechanisms to organismal response to stress is largely biased towards specific taxonomic groups (e.g. seed plants) and environmental stresses (e.g. drought and salinity). In previous work, we found intraspecific differences in heavy metal (HM) uptake capacity in the brown macroalgae Fucus vesiculosus. The molecular mechanisms underlying these differences, however, remained unknown. Here, we evaluated the concentrations of HMs, and characterized the genetic (single nucleotide polymorphisms) and epigenetic (cytosine DNA methylation) variability in reciprocal transplants of F. vesiculosus between two polluted and two unpolluted sites on the NW Spanish coast after 90 days. Genetic and epigenetic differentiation did not explain the phenotypic differentiation observed, possibly due to the combined effect of multiple environmental factors acting on the algae in their natural habitats. Nonetheless, we provide further evidence of intraspecific genetic differentiation in F. vesiculosus at short spatial scales, as well as first evidence of population-specific epigenetic changes in brown macroalgae in response to changes in environmental conditions (i.e. transplantation ex situ). We propose that both genetic and, to some extent, epigenetic mechanisms might impinge upon the adaptive potential of this species to environmental change, but this needs to be further addressed.

Exploring the leaf regeneration cycles response of Zostera japonica to ocean acidification

Ocean acidification is one of the major global environmental problems facing humankind today, and it has far-reaching impacts on marine organisms and the entire marine ecosystem. Zostera japonica, an important supporting species of intertidal seagrass beds, exhibits high photosynthetic productivity and plays an important role in the carbon cycle of nearshore waters. However, little is known about the characteristics, processes, and mechanisms of its response to ocean acidification. In this study, we conducted a 120-day acidification experiment in Z. japonica; here, plants underwent four leaf regeneration cycles to reveal the response mechanism of Z. japonica to ocean acidification (OA). We found that acidification significantly affected the seedling stage of Z. japonica, impacting leaf regeneration cycles by altering physiological and molecular responses. In one leaf regeneration cycle, the short-term exposure to CO2 affected the seagrass parameters, such as the regulation of inorganic carbon uptake modes and the regulation of photosynthesis between the dark and light reactions, with the potential to affect the carbon sinks of the marine organisms. The long-term effects on the regulation of antioxidant enzymes and antioxidant metabolites, caused an improvement in the marine life adaptation to OA. In a comparison of the different leaf regeneration cycles, the response pattern of Z. japonica showed an offset of the acidification during the short cycles and an adaption to the acidification during the long cycles. This study revealed the response mechanism of Z. japonica to OA at different time scales and could provide a theoretical basis for accurately assessing the impact of OA on seagrass and the entire seagrass bed ecosystem.

The effects of temperature and CO2 enrichment on the red seaweed Asparagopsis taxiformis from Southern California with implications for aquaculture

The red alga Asparagopsis taxiformis has recently been recognized for its unique ability to significantly reduce methane emissions from ruminant animals when fed in small quantities. The main obstacle in using this seaweed as a methane-mitigating feed supplement is the lack of commercially available biomass. Little is known about how best to grow this red alga on a commercial scale, as there are few published studies that have investigated the factors that influence growth, physiology, and overall performance. This study examined the effects of temperature and CO2 enrichment on the growth, photophysiology, and concentration of bromoform, the secondary metabolite largely responsible for methane reduction in A. taxiformis. A series of single and multifactor closed culture experiments were conducted on A. taxiformis collected, isolated, and cultured from populations in Southern California. We identified the optimal temperature range to be between 22 and 26°C, with significant short-term stress observed below 15°C and above 26°C. Carbon dioxide addition resulted in increased performance, when accounting for growth per CO2 use. In general, we observed the highest bromoform concentrations in algae with the highest growth rates, but these results varied among experiments. These findings indicate that through environmental control and by addressing limiting resources, significant increases in biomass production and quality can be achieved.

Anoxic seagrass leaf environments as potential hotspots for toxin production and N2O emission

Epiphytes on seagrass leaves can render parts of the leaf phyllosphere anoxic in darkness owing to leaf/epiphyte respiration and O2 diffusion constraints. In such anoxic microenvironments, anaerobic microbes can potentially produce phytotoxins and greenhouse gases, but the actual occurrence of such processes in seagrass epiphytic biofilms remain uncertain. We used microsensors to measure O2, NO, N2O and H2S concentration gradients, as well as NO and O2 dynamics within epiphytic biofilms on seagrass (Zostera marina) leaves under changing environmental conditions. The bacterial community composition of epiphytic biofilms was analyzed with 16S rRNA gene amplicon sequencing. Flavobacteriaceae and Rhodobacteraceae were dominant bacterial community members accounting for ˃50 % of the relative abundance, and sulfate-reducing bacteria (Desulfobacterota) were omnipresent in the epiphytic biofilms. We found pronounced production of NO, N2O and H2S in anoxic parts of the seagrass phyllosphere, with NO and H2S reaching maximal concentrations of 1.0 and 4.4 μmol L-1, respectively, under slow flow and hypoxic seawater conditions, while the highest N2O concentration in the epiphytic biofilms reached 5.9 μmol L-1 in hypoxic, nitrate-rich seawater. Part of the phytotoxic NO and H2S diffused into the seagrass leaves, while no NO escaped the biofilm. In contrast, N2O emission from the biofilm in hypoxic and eutrophic seawater reached 9.6 μmol N2O m-2 day-1. Such release of the potent greenhouse gas N2O from seagrass leaves with epiphytic biofilms under eutrophic conditions could potentially offset the carbon burial capacity of seagrass meadows. Ocean eutrophication can thus stimulate denitrification and sulfate reduction within anoxic leaf microenvironments, negatively impacting seagrass fitness and ecological function.

Functional plasticity of HCO3- uptake and CO2 fixation in Cupriavidus necator H16

Despite its prominence, the ability to engineer Cupriavidus necator H16 for inorganic carbon uptake and fixation is underexplored. We tested the roles of endogenous and heterologous genes on C. necator inorganic carbon metabolism. Deletion of β-carbonic anhydrase can had the most deleterious effect on C. necator autotrophic growth. Replacement of this native uptake system with several classes of dissolved inorganic carbon (DIC) transporters from Cyanobacteria and chemolithoautotrophic bacteria recovered autotrophic growth and supported higher cell densities compared to wild-type (WT) C. necator in batch culture. Strains expressing Halothiobacillus neopolitanus DAB2 (hnDAB2) and diverse rubisco homologs grew in CO2 similarly to the wild-type strain. Our experiments suggest that the primary role of carbonic anhydrase during autotrophic growth is to support anaplerotic metabolism, and an array of DIC transporters can complement this function. This work demonstrates flexibility in HCO3- uptake and CO2 fixation in C. necator, providing new pathways for CO2-based biomanufacturing.

Diverse inorganic carbon uptake strategies in Antarctic seaweeds: Revealing species-specific responses and implications for Ocean Acidification

Seaweeds are important components of coastal benthic ecosystems along the Western Antarctic Peninsula (WAP), providing refuge, food, and habitat for numerous associated species. Despite their crucial role, the WAP is among the regions most affected by global climate change, potentially impacting the ecology and physiology of seaweeds. Elevated atmospheric CO2 concentrations have led to increased dissolved inorganic carbon (Ci) with consequent declines in oceanic pH and alterations in seawater carbonate chemistry, known as Ocean Acidification (OA). Seaweeds possess diverse strategies for Ci uptake, including CO2 concentrating mechanisms (CCMs), which may distinctly respond to changes in Ci concentrations. Conversely, some seaweeds do not operate CCMs (non-CCM species) and rely solely on CO2. Nevertheless, our understanding of the status and functionality of Ci uptake strategies in Antarctic seaweeds remains limited. Here, we investigated the Ci uptake strategies of seaweeds along a depth gradient in the WAP. Carbon isotope signatures (δ13C) and pH drift assays were used as indicators of the presence or absence of CCMs. Our results reveal variability in CCM occurrence among algal phyla and depths ranging from 0 to 20 m. However, this response was species specific. Among red seaweeds, the majority relied solely on CO2 as an exogenous Ci source, with a high percentage of non-CCM species. Green seaweeds exhibited depth-dependent variations in CCM status, with the proportion of non-CCM species increasing at greater depths. Conversely, brown seaweeds exhibited a higher prevalence of CCM species, even in deep waters, indicating the use of CO2 and HCO3-. Our results are similar to those observed in temperate and tropical regions, indicating that the potential impacts of OA on Antarctic seaweeds will be species specific. Additionally, OA may potentially increase the abundance of non-CCM species relative to those with CCMs.

A portable multi-taxa phenotyping device to retrieve physiological performance traits

Organismal phenotyping to identify fitness traits is transforming our understanding of adaptive responses and ecological interactions of species within changing environments. Here we present a portable Multi-Taxa Phenotyping (MTP) system that can retrieve a suite of metabolic and photophysiological parameter across light, temperature, and/or chemical gradients, using real time bio-optical (oxygen and chlorophyll a fluorescence) measurements. The MTP system integrates three well-established technologies for the first time: an imaging Pulse Amplitude Modulated (PAM) chlorophyll a fluorometer, custom-designed well plates equipped with optical oxygen sensors, and a thermocycler. We demonstrate the ability of the MTP system to distinguish phenotypic performance characteristics of diverse aquatic taxa spanning corals, mangroves and algae based on metabolic parameters and Photosystem II dynamics, in a high-throughput capacity and accounting for interactions of different environmental gradients on performance. Extracted metrics from the MTP system can not only provide information on the performance of aquatic taxa exposed to differing environmental gradients, but also provide predicted phenotypic responses of key aquatic organisms to environmental change. Further work validating how rapid phenotyping tools such as the MTP system predict phenotypic responses to long term environmental changes in situ are urgently required to best inform how these tools can support management efforts.

Impact assessment of multiple pressures on ecosystem services with a state and transition model: Application to Posidonia oceanica seagrass meadows

A significant challenge in the integration of ecosystem services into decision-making processes lies in effectively capturing the dynamics of marine socio-ecological systems, including their evolutionary pathways, equilibrium states, and tipping points. This paper explores the evolutionary trajectories of a vital marine ecosystem endemic to the Mediterranean Sea: the Posidonia oceanica seagrass meadows, in response to various drivers of change. A state-and-transition model is employed to assess the ecosystem services provided by P. oceanica across different states defined by selected transitions, such as overfishing, fragmentation, pollution, and invasion by non-native species. To apply this model, scientific expertise is combined with field data generated using the Ecosystem-Based Quality Index to evaluate the conservation status of P. oceanica. This integrated approach allows for the representation of the ecosystem services offered by the meadows across different states, leveraging ecological data. The findings highlight the disproportionate impact on provisioning services, particularly sea urchins and commercial fish production, which suffer the most under various stressors. Notably, when these services decline to critical levels, the meadows cease to provide significant benefits. Finally, a synthesized representation is presented, merging ecological insights with monitoring data, offering a framework that is more accessible to stakeholders and decision-makers.

Acidification alleviates the inhibition of hyposaline stress on physiological performance of tropical seagrass Thalassia hemprichii

Since the Industrial Revolution, increasing atmospheric CO2 concentrations have had a substantial negative impact influence on coastal ecosystems because of direct effects including ocean acidification and indirect effects such as extreme rainfall events. Using a two-factor crossover indoor simulation experiment, this study examined the combined effects of acidification and hyposaline stress on Thalassia hemprichii. Seawater acidification increased the photosynthetic pigment content of T. hemprichii leaves and promoted seagrass growth rate. Hyposaline stress slowed down seagrass growth and had an impact on the osmotic potential and osmoregulatory substance content of seagrass leaves. Acidification and salinity reduction had significant interaction effects on the photosynthesis rate, photosynthetic pigment content, chlorophyll fluorescence parameters, and osmotic potential of T. hemprichii, but not on the growth rate. Overall, these findings have shown that the hyposaline stress inhibitory effect on the T. hemprichii physiological performance and growth may be reduced by acidification.

What if the upwelling weakens? Effects of rising temperature and nutrient depletion on coastal assemblages

Surface temperature of the oceans has increased globally over the past decades. In coastal areas influenced by eastern boundary upwelling systems (EBUS), winds push seawater offshore and deep, cold and nutrient-rich seawater rise towards the surface, partially buffering global warming. On the North coast of Portugal, the NW Iberian upwelling system allows extensive kelp forests to thrive in these "boreal-like" conditions, fostering highly diverse and productive communities. However, the warming of the upper layer of the ocean may weaken this upwelling, leading to higher sea surface temperature and lower nutrient input in the coastal areas. The effects of these changes on the structure and function of coastal ecosystems remain unexplored. The present study aimed to examine the combined effects of elevated temperature and nutrient depletion on semi-naturally structured assemblages. The eco-physiological responses investigated included growth, chlorophyll fluorescence and metabolic rates at the levels of individual species and whole assemblages. Our findings showed interactive effects of the combination of elevated temperature with nutrient depletion on the large canopy-forming species (i.e., kelp). As main contributor to community response, those effects drove the whole assemblage responses to significant losses in productivity levels. We also found an additive effect of elevated temperature and reduced nutrients on sub-canopy species (i.e., Chondrus crispus), while turfs were only affected by temperature. Our results suggest that under weakening upwelling scenarios, the ability of the macroalgal assemblages to maintain high productivity rates could be seriously affected and predict a shift in community composition with the loss of marine forests.

A laboratory study of the increasing competitiveness of Karenia mikimotoi under rising CO2 scenario

Ocean acidification (OA) driven by elevated carbon dioxide (CO2) levels is expected to disturb marine ecological processes, including the formation and control of harmful algal blooms (HABs). In this study, the effects of rising CO2 on the allelopathic effects of macroalgae Ulva pertusa to a toxic dinoflagellate Karenia mikimotoi were investigated. It was found that high level of CO2 (1000 ppmv) promoted the competitive growth of K. mikimotoi compared to the group of present ambient CO2 level (420ppmv), with the number of algal cell increased from 32.2 × 104 cells/mL to 36.75 × 104 cells/mL after 96 h mono-culture. Additionally, rising CO2 level weakened allelopathic effects of U. pertusa on K. mikimotoi, as demonstrated by the decreased inhibition rate (50.6 % under the original condition VS 34.3 % under the acidified condition after 96 h co-culture) and the decreased reactive oxygen species (ROS) level, malondialdehyde (MDA) content, antioxidant enzymes activity (superoxide dismutase (SOD), peroxidase (POD), glutathione peroxidase (GPX), glutathione reductase (GR) and catalase (CAT) and non-enzymatic antioxidants (glutathione (GSH) and ascorbic acid (ascorbate, vitamin C). Indicators for cell apoptosis of K. mikimotoi including decreased caspase-3 and -9 protease activity were observed when the co-cultured systems were under rising CO2 exposure. Furthermore, high CO2 level disturbed fatty acid synthesis in U. pertusa and significantly decreased the contents of fatty acids with allelopathy, resulting in the allelopathy weakening of U. pertusa. Collectively, rising CO2 level promoted the growth of K. mikimotoi and weakened allelopathic effects of U. pertusa on K. mikimotoi, indicating the increased difficulties in controlling K. mikimotoi using macroalgae in the future.

Responses of marine trophic levels to the combined effects of ocean acidification and warming

Marine organisms are simultaneously exposed to anthropogenic stressors associated with ocean acidification and ocean warming, with expected interactive effects. Species from different trophic levels with dissimilar characteristics and evolutionary histories are likely to respond differently. Here, we perform a meta-analysis of controlled experiments including both ocean acidification and ocean warming factors to investigate single and interactive effects of these stressors on marine species. Contrary to expectations, we find that synergistic interactions are less common (16%) than additive (40%) and antagonistic (44%) interactions overall and their proportion decreases with increasing trophic level. Predators are the most tolerant trophic level to both individual and combined effects. For interactive effects, calcifying and non-calcifying species show similar patterns. We also identify climate region-specific patterns, with interactive effects ranging from synergistic in temperate regions to compensatory in subtropical regions, to positive in tropical regions. Our findings improve understanding of how ocean warming, and acidification affect marine trophic levels and highlight the need for deeper consideration of multiple stressors in conservation efforts.

Accelerated nitrogen cycling on Mediterranean seagrass leaves at volcanic CO2 vents

Seagrass meadows form highly productive and diverse ecosystems in coastal areas worldwide, where they are increasingly exposed to ocean acidification (OA). Efficient nitrogen (N) cycling and uptake are essential to maintain plant productivity, but the effects of OA on N transformations in these systems are poorly understood. Here we show that complete N cycling occurs on leaves of the Mediterranean seagrass Posidonia oceanica at a volcanic CO2 vent near Ischia Island (Italy), with OA affecting both N gain and loss while the epiphytic microbial community structure remains largely unaffected. Daily leaf-associated N2 fixation contributes to 35% of the plant's N demand under ambient pH, while it contributes to 45% under OA. Nitrification potential is only detected under OA, and N-loss via N2 production increases, although the balance remains decisively in favor of enhanced N gain. Our work highlights the role of the N-cycling microbiome in seagrass adaptation to OA, with key N transformations accelerating towards increased N gain.

Spatiotemporal variability in population demography and morphology of the habitat-forming macroalga Saccorhiza polyschides in the Western English Channel

BACKGROUND AND AIMS

Large brown macroalgae serve as foundation organisms along temperate and polar coastlines, providing a range of ecosystem services. Saccorhiza polyschides is a warm-temperate kelp-like species found in the northeast Atlantic, which is suggested to have proliferated in recent decades across the southern UK, possibly in response to increasing temperatures, physical disturbance and reduced competition. However, little is known about S. polyschides with regard to ecological functioning and population dynamics across its geographical range. Here we examined the population demography of S. polyschides populations in southwest UK, located within the species' range centre, to address a regional knowledge gap and to provide a baseline against which to detect future changes.

METHODS

Intertidal surveys were conducted during spring low tides at three sites along a gradient of wave exposure in Plymouth Sound (Western English Channel) over a period of 15 months. Density, cover, age, biomass and morphology of S. polyschides were quantified. Additionally, less frequent sampling of shallow subtidal reefs was conducted to compare intertidal and subtidal populations.

KEY RESULTS

We recorded pronounced seasonality, with fairly consistent demographic patterns across sites and depths. By late summer, S. polyschides was a dominant habitat-former on both intertidal and subtidal reefs, with maximum standing stock exceeding 13 000 g wet weight m-2.

CONCLUSIONS

Saccorhiza polyschides is a conspicuous and abundant member of rocky reef assemblages in the region, providing complex and abundant biogenic habitat for associated organisms and high rates of primary productivity. However, its short-lived pseudo-annual life strategy is in stark contrast to dominant long-lived perennial laminarian kelps. As such, any replacement or reconfiguration of habitat-forming macroalgae due to ocean warming will probably have implications for local biodiversity and community composition. More broadly, our study demonstrates the importance of high-resolution cross-habitat surveys to generate robust baselines of kelp population demography, against which the ecological impacts of climate change and other stressors can be reliably detected.

Dead foundation species drive ecosystem dynamics

Foundation species facilitate communities, modulate energy flow, and define ecosystems, but their ecological roles after death are frequently overlooked. Here, we reveal the widespread importance of their dead structures as unique, interacting components of ecosystems that are vulnerable to global change. Key metabolic activity, mobility, and morphology traits of foundation species either change or persist after death with important consequences for ecosystem functions, biodiversity, and subsidy dynamics. Dead foundation species frequently mediate ecosystem stability, resilience, and transitions, often through feedbacks, and harnessing their structural and trophic roles can improve restoration outcomes. Enhanced recognition of dead foundation species and their incorporation into habitat monitoring, ecological theory, and ecosystem forecasting can help solve the escalating conservation challenges of the Anthropocene.

The diversity and coevolution of Rubisco and CO2 concentrating mechanisms in marine macrophytes

The kinetic properties of Rubisco, the most important carbon-fixing enzyme, have been assessed in a small fraction of the estimated existing biodiversity of photosynthetic organisms. Until recently, one of the most significant gaps of knowledge in Rubisco kinetics was marine macrophytes, an ecologically relevant group including brown (Ochrophyta), red (Rhodophyta) and green (Chlorophyta) macroalgae and seagrasses (Streptophyta). These organisms express various Rubisco types and predominantly possess CO2 -concentrating mechanisms (CCMs), which facilitate the use of bicarbonate for photosynthesis. Since bicarbonate is the most abundant form of dissolved inorganic carbon in seawater, CCMs allow marine macrophytes to overcome the slow gas diffusion and low CO2 availability in this environment. The present review aims to compile and integrate recent findings on the biochemical diversity of Rubisco and CCMs in the main groups of marine macrophytes. The Rubisco kinetic data provided demonstrate a more relaxed relationship among catalytic parameters than previously reported, uncovering a variability in Rubisco catalysis that has been hidden by a bias in the literature towards terrestrial vascular plants. The compiled data indicate the existence of convergent evolution between Rubisco and biophysical CCMs across the polyphyletic groups of marine macrophytes and suggest a potential role for oxygen in shaping such relationship.

Season-specific impacts of climate change on canopy-forming seaweed communities

Understory assemblages associated with canopy-forming species such as trees, kelps, and rockweeds should respond strongly to climate stressors due to strong canopy-understory interactions. Climate change can directly and indirectly modify these assemblages, particularly during more stressful seasons and climate scenarios. However, fully understanding the seasonal impacts of different climate conditions on canopy-reliant assemblages is difficult due to a continued emphasis on studying single-species responses to a single future climate scenario during a single season. To examine these emergent effects, we used mesocosm experiments to expose seaweed assemblages associated with the canopy-forming golden rockweed, Silvetia compressa, to elevated temperature and pCO2 conditions reflecting two projected greenhouse emission scenarios (RCP 2.6 [low] & RCP 4.5 [moderate]). Assemblages were grown in the presence and absence of Silvetia, and in two seasons. Relative to ambient conditions, predicted climate scenarios generally suppressed Silvetia biomass and photosynthetic efficiency. However, these effects varied seasonally-both future scenarios reduced Silvetia biomass in summer, but only the moderate scenario did so in winter. These reductions shifted the assemblage, with more extreme shifts occurring in summer. Contrarily, future scenarios did not shift assemblages within Silvetia Absent treatments, suggesting that climate primarily affected assemblages indirectly through changes in Silvetia. Mesocosm experiments were coupled with a field Silvetia removal experiment to simulate the effects of climate-mediated Silvetia loss on natural assemblages. Consistent with the mesocosm experiment, Silvetia loss resulted in season-specific assemblage shifts, with weaker effects observed in winter. Together, our study supports the hypotheses that climate-mediated changes to canopy-forming species can indirectly affect the associated assemblage, and that these effects vary seasonally. Such seasonality is important to consider as it may provide periods of recovery when conditions are less stressful, especially if we can reduce the severity of future climate scenarios.

Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment

We present chromosome-level genome assemblies from representative species of three independently evolved seagrass lineages: Posidonia oceanica, Cymodocea nodosa, Thalassia testudinum and Zostera marina. We also include a draft genome of Potamogeton acutifolius, belonging to a freshwater sister lineage to Zosteraceae. All seagrass species share an ancient whole-genome triplication, while additional whole-genome duplications were uncovered for C. nodosa, Z. marina and P. acutifolius. Comparative analysis of selected gene families suggests that the transition from submerged-freshwater to submerged-marine environments mainly involved fine-tuning of multiple processes (such as osmoregulation, salinity, light capture, carbon acquisition and temperature) that all had to happen in parallel, probably explaining why adaptation to a marine lifestyle has been exceedingly rare. Major gene losses related to stomata, volatiles, defence and lignification are probably a consequence of the return to the sea rather than the cause of it. These new genomes will accelerate functional studies and solutions, as continuing losses of the 'savannahs of the sea' are of major concern in times of climate change and loss of biodiversity.

Low molecular weight carbohydrate patterns of mangrove macroalgae from different climatic niches under ocean acidification, warming and salinity variation

Ocean acidification has increased due to the enhanced solubility of CO2 in seawater. Mangrove macroalgae in tropical and subtropical coastal regions can benefit from the higher availability of CO2 for photosynthesis and primary production. However, they can be negatively affected by the simultaneously occurring warming and increased salinity in estuaries. Thus, we analyzed the isolated effects of ocean acidification and the interactive effects of increased temperature and salinity on the low molecular weight carbohydrate (LMWC) contents of the mangrove red macroalgae Bostrychia montagnei and Bostrychia calliptera from Brazilian tropical and subtropical populations. Specimens from both climatic niches were tolerant to pH decreased by CO2 enrichment and enhanced their LMWC contents under increased availability of CO2. Specimens from both climatic niches also accumulated their dulcitol and sorbitol contents to cope with warming and salt stress. Nevertheless, temperature of 34 °C was lethal for tropical macroalgae, while 29 °C and 31 °C were lethal for subtropical B. calliptera under salinity of 35. Tropical and subtropical B. montagnei synthesized dulcitol (5-110 mmol kg-1 dry weight) and sorbitol (5-100 mmol kg-1 dry weight) as osmoregulatory, energy and thermal protection compounds, whereas tropical and subtropical B. calliptera synthesized mainly dulcitol (10-210 mmol kg-1 dry weight). Although digeneaside has an energy function in Bostrychia spp., it is not an osmolyte or thermal protection compound. Our data demonstrated that both tropical and subtropical Bostrychia spp. benefit from ocean acidification by CO2 enrichment, increasing their LMWC contents. However, warming and increased salinity in estuaries will be detrimental to them, even they producing protective metabolites. Multifactorial approaches are recommended to investigate whether negative effects of increased temperature and salinity nullify positive effects of ocean acidification on these Bostrychia species/populations.

Marine heatwaves recurrence aggravates thermal stress in the surfgrass Phyllospadix scouleri

The surfgrass Phyllospadix scouleri grows in highly productive meadows along the Pacific coast of North America. This region has experienced increasingly severe marine heatwaves (MHWs) in recent years. Our study evaluated the impact of consecutive MHWs, simulated in mesocosms, on essential ecophysiological features of P. scouleri. Overall, our findings show that the plants' overall physiological status has been progressively declining. Interestingly, the indicators of physiological stress in photosynthesis only showed up once the initial heat exposure stopped (i.e., during the recovery period). The warming caused increased oxidative damage and a decrease in nitrate uptake rates. However, the levels of non-structural carbohydrates and relative growth rates were not affected. Our findings emphasize the significance of incorporating recovery periods in this type of study as they expose delayed stress responses. Furthermore, experiencing consecutive intense MHWs can harm surfgrasses over time, compromising the health of their meadows and the services they offer to the ecosystem.

High nutrient availability modulates photosynthetic performance and biochemical components of the economically important marine macroalga Kappaphycus alvarezii (Rhodophyta) in response to ocean acidification

Increased atmospheric CO2 concentrations not only change the components of inorganic carbon system in seawater, resulting in ocean acidification, but also lead to decreased seawater pH, resulting in ocean acidification. Consequently, increased inorganic carbon concentrations in seawater provide a sufficient carbon source for macroalgal photosynthesis and growth. Increased domestic sewage and industrial wastewater discharge into coastal areas has led to nutrient accumulation in coastal seawaters. Combined with elevated pCO2 (1200 ppmv), increased nutrient availability always stimulates the growth of non-calcifying macroalgae, such as red economical macroalga Gracilariopsis lemaneiformis. Here, we evaluated the interactive effects of nutrients with elevated pCO2 on the economically important marine macroalga Kappaphycus alvarezii (Rhodophyta) in a factorial 21-day coupling experiment. The effects of increased nutrient availability on photosynthesis and photosynthetic pigments of K. alvarezii were greater than those of pCO2 concentration. The highest Fv/Fm values (0.660 ± 0.019 and 0.666 ± 0.030, respectively) were obtained at 2 μmol L-1 of NO3-N at two pCO2 levels. Under the elevated pCO2 condition, the Chl-a content was lowest (0.007 ± 0.004 mg g-1) at 2 μmol L-1 of NO3-N and highest (0.024 ± 0.002 mg g-1) at 50 μmol L-1 of NO3-N. The phycocyanin content was highest (0.052 ± 0.012 mg g-1) at 150 μmol L-1 of NO3-N under elevated pCO2 condition. The malondialdehyde content declined from 32.025 ± 4.558 nmol g-1 to 26.660 ± 3.124 nmol g-1 with the increased nutrients at under low pCO2. To modulate suitable adjustments, soluble biochemical components such as soluble carbohydrate, soluble protein, free amino acids, and proline were abundantly secreted and were likely to protect the integrity of cellular structures under elevated nutrient availability. Our findings can serve as a reference for cultivation and bioremediation methods under future environmental conditions.

Impacts of Climate Change on Marine Foundation Species

Marine foundation species are the biotic basis for many of the world's coastal ecosystems, providing structural habitat, food, and protection for myriad plants and animals as well as many ecosystem services. However, climate change poses a significant threat to foundation species and the ecosystems they support. We review the impacts of climate change on common marine foundation species, including corals, kelps, seagrasses, salt marsh plants, mangroves, and bivalves. It is evident that marine foundation species have already been severely impacted by several climate change drivers, often through interactive effects with other human stressors, such as pollution, overfishing, and coastal development. Despite considerable variation in geographical, environmental, and ecological contexts, direct and indirect effects of gradual warming and subsequent heatwaves have emerged as the most pervasive drivers of observed impact and potent threat across all marine foundation species, but effects from sea level rise, ocean acidification, and increased storminess are expected to increase. Documented impacts include changes in the genetic structures, physiology, abundance, and distribution of the foundation species themselves and changes to their interactions with other species, with flow-on effects to associated communities, biodiversity, and ecosystem functioning. We discuss strategies to support marine foundation species into the Anthropocene, in order to increase their resilience and ensure the persistence of the ecosystem services they provide.

Ocean acidification impairs seagrass performance under thermal stress in shallow and deep water

Despite the effects of ocean acidification (OA) on seagrasses have been widely investigated, predictions of seagrass performance under future climates need to consider multiple environmental factors. Here, we performed a mesocosm study to assess the effects of OA on shallow and deep Posidonia oceanica plants. The experiment was run in 2021 and repeated in 2022, a year characterized by a prolonged warm water event, to test how the effects of OA on plants are modulated by thermal stress. The response of P. oceanica to experimental conditions was investigated at different levels of biological organization. Under average seawater temperature, there were no effects of OA in both shallow and deep plants, indicating that P. oceanica is not limited by current inorganic carbon concentration, regardless of light availability. In contrast, under thermal stress, exposure of plants to OA increased lipid peroxidation and decreased photosynthetic performance, with deep plants displaying higher levels of heat stress, as indicated by the over-expression of stress-related genes and the activation of antioxidant systems. In addition, warming reduced plant growth, regardless of seawater CO2 and light levels, suggesting that thermal stress may play a fundamental role in the future development of seagrass meadows. Our results suggest that OA may exacerbate the negative effects of future warming on seagrasses.

Adaptive responses of eelgrass (Zostera marina L.) to ocean warming and acidification

Ocean warming (OW) and ocean acidification (OA), driven by rapid global warming accelerating at unprecedented rates, are profoundly impacting the stability of seagrass ecosystems. Yet, our current understanding of the effects of OW and OA on seagrass remains constrained. Herein, we investigated the response of eelgrass (Zostera marina L.), a representative seagrass species, to OW and OA through comprehensive transcriptomic and metabolomic analyses. The results showed notable variations in plant performance under varying conditions: OW, OA, and OWA (a combination of both conditions). Specifically, under average oceanic temperature conditions for eelgrass growth over the past 20 years -from May to November-OA promoted the production of differentially expressed genes and metabolites associated with alanine, aspartate, and glutamate metabolism, as well as starch and sucrose metabolism. Under warming condition, eelgrass was resistant to OA by accelerating galactose metabolism, along with glycine, serine, and threonine metabolism, as well as the tricarboxylic acid (TCA) cycle. Under the combined OW and OA condition, eelgrass stimulated fructose and mannose metabolism, glycolysis, and carbon fixation, in addition to galactose metabolism and the TCA cycle to face the interplay. Our findings suggest that eelgrass exhibits adaptive capacity by inducing different metabolites and associated genes, primarily connected with carbon and nitrogen metabolism, in response to varying degrees of OW and OA. The data generated here support the exploration of mechanisms underlying seagrass responses to environmental fluctuations, which hold critical significance for the future conservation and management of these ecosystems.

Identifying conservation and restoration priorities for degraded coastal wetland vegetations: Integrating species distribution model and GeoDetector

The ongoing degradation of seagrass and seaweed is of global concern. Comprehending the spatial distribution of these wetland vegetation types and the threats they face becomes critical for effective conservation and restoration efforts. In this study, we combined a species distribution model and geographical detector to propose a novel framework for mapping the distribution and disturbance of degraded coastal wetland vegetation in sparsely recorded areas and identifying conservation and restoration priorities. Guangxi is a province in China known for its extensive coastal wetland vegetation. In our study of Guangxi, habitats suitable for two degraded vegetation types, i.e., seagrass and seaweed, were mapped using the maximum entropy model; 669.44 km2 of seagrass habitat and 929.69 km2 of seaweed habitat were identified. The geographical detector model was used to analyze anthropogenic disturbance caused by four local disturbance factors: shoreline development, fisheries, waterways, and ports and anchorages. Shoreline development was identified as the disturbance factor with the strongest impact on potential habitats of both vegetation types. According to these findings, 48.40 %-64.23 % of the vegetation habitats suffered from high anthropogenic disturbance. Preexisting nature reserves had not effectively protected wetland vegetation from human disturbance. Based on the spatial pattern of vegetation habitat and comprehensive anthropogenic disturbance, conservation and restoration priorities for seagrasses and seaweeds covering an area of 302.26 km2 were further mapped. Our results thus help improve wetland vegetation conservation by providing basic information, and they provide a tool to support site planning for seagrass and seaweed conservation and restoration.

Seagrass meadows as ocean acidification refugia for sea urchin larvae

Foundation species have been widely documented to provide suitable habitats for other species by ameliorating stressful environmental conditions. Nonetheless, their role in rescuing stress-sensitive species from adverse conditions due to climate change remains often unexplored. Here, we performed a mesocosm experiment to assess whether the seagrass, Posidonia oceanica, through its photosynthetic activity, could mitigate the negative effects of ocean acidification on larval development and growth of the calcifying sea urchin, Paracentrotus lividus. Sea urchin larvae at early and late developmental stages that are generally associated to benthic habitats, were grown in aquaria with or without P. oceanica plants, under ambient or low pH conditions predicted by the end of the century under the worst climate scenario (RCP8.5). The percentage of abnormal larvae and their total body length under different experimental conditions were assessed on early- (i.e., pluteus; 72 h post-fertilization) and final-developmental stages (i.e., echinopluteus; 30 days post-fertilization), respectively. The presence of P. oceanica increased mean daily pH values of ∼0.1 and ∼0.15 units at ambient and low pH conditions, respectively, compared with tanks without plants. When grown at low pH in association with P. oceanica, plutei showed a ∼23 % reduction of malformations and echinoplutei a ∼34 % increase in total body length, respectively, compared with larvae developing in tanks without plants. Our results suggest that P. oceanica, by increasing pH and altering seawater carbonate chemistry through its metabolic activity, could buffer the negative effects of ocean acidification on calcifying organisms and could, thus, represent a tool against climate-driven loss of biodiversity.

Using seagrass as a nature-based solution: Short-term effects of Zostera noltei transplant in benthic communities of a European Atlantic coastal lagoon

Seagrass meadows provide several ecological functions that improve the overall ecological health of coastal systems and therefore, it is urgent to promote the restoration of such habitats. In Ria de Aveiro, a coastal lagoon in the Atlantic Coast of Portugal, a restoration initiative was responsible for transplanting the dwarf eelgrass Zostera noltei into a highly degraded area. This eelgrass was used as a nature-based solution (NbS) to mitigate some of the impacts of historical mercury contamination. Comparisons of key-species features (density and biomass), and some community-derived indicators (total density and biomass, species richness and Shannon-Wiener index) between the transplanted seagrass patch, their bare vicinities, and their counterpart habitats on the source area, provided signs of the effectiveness of the restoration action on the benthic communities' recovery. Indicators were higher within the restored meadow, and biomass derived indicators of the restored meadow were similar to the source meadow.

Effects of ocean acidification on growth and photophysiology of two tropical reef macroalgae

Macroalgae can modify coral reef community structure and ecosystem function through a variety of mechanisms, including mediation of biogeochemistry through photosynthesis and the associated production of dissolved organic carbon (DOC). Ocean acidification has the potential to fuel macroalgal growth and photosynthesis and alter DOC production, but responses across taxa and regions are widely varied and difficult to predict. Focusing on algal taxa from two different functional groups on Caribbean coral reefs, we exposed fleshy (Dictyota spp.) and calcifying (Halimeda tuna) macroalgae to ambient and low seawater pH for 25 days in an outdoor experimental system in the Florida Keys. We quantified algal growth, calcification, photophysiology, and DOC production across pH treatments. We observed no significant differences in the growth or photophysiology of either species between treatments, except for lower chlorophyll b concentrations in Dictyota spp. in response to low pH. We were unable to quantify changes in DOC production. The tolerance of Dictyota and Halimeda to near-future seawater carbonate chemistry and stability of photophysiology, suggests that acidification alone is unlikely to change biogeochemical processes associated with algal photosynthesis in these species. Additional research is needed to fully understand how taxa from these functional groups sourced from a wide range of environmental conditions regulate photosynthesis (via carbon uptake strategies) and how this impacts their DOC production. Understanding these species-specific responses to future acidification will allow us to more accurately model and predict the indirect impacts of macroalgae on coral health and reef ecosystem processes.

Impact of kelp forest on seawater chemistry - A review

Kelp forests, globally distributed in cool temperate and polar waters, are renowned for their pivotal role in supporting species diversity and fostering macroalgae productivity. These high-canopy algal ecosystems dynamically influence their surroundings, particularly by altering the physicochemical properties of seawater. This review article aims to underscore the significance of kelp forests in modifying water masses. By serving as effective carbon sinks through the absorption of bicarbonate (HCO3-) and carbon dioxide (CO2) for photosynthesis, kelp forests mitigate nearby acidity levels while enhancing dissolved oxygen concentrations, essential for sustaining diverse marine communities. Additionally, kelp beds have exhibited the need to use inorganic ions (NO3-, NO2-, PO43-) from seawater in order to grow, albeit with associated increases in NH4+ concentrations. Specific examples and findings from relevant studies will be presented to illustrate the profound impact of kelp forests on seawater chemistry, emphasizing their vital role in marine ecosystems.

Seagrass Thalassia hemprichii and associated bacteria co-response to the synergistic stress of ocean warming and ocean acidification

Seagrass meadows play vital ecological roles in the marine ecosystem. Global climate change poses considerable threats to seagrass survival. However, it is unclear how seagrass and its associated bacteria will respond under future complex climate change scenarios. This study explored the effects of ocean warming (+2 °C) and ocean acidification (-0.4 units) on seagrass physiological indexes and bacterial communities (sediment and rhizosphere bacteria) of the seagrass Thalassia hemprichii during an experimental exposure of 30 days. Results demonstrated that the synergistic effect of ocean warming and ocean acidification differed from that of one single factor on seagrass and the associated bacterial community. The seagrass showed a weak resistance to ocean warming and ocean acidification, which manifested through the increase in the activity of typical oxidoreductase enzymes. Moreover, the synergistic effect of ocean warming and ocean acidification caused a significant decrease in seagrass's chlorophyll content. Although the bacterial community diversity exhibited higher resistance to ocean warming and ocean acidification, further bacterial functional analysis revealed the synergistic effect of ocean warming and ocean acidification led to significant increases in SOX-related genes abundance which potentially supported the seagrass in resisting climate stress by producing sulfates and oxidizing hydrogen sulfide. More stable bacterial communities were detected in the seagrass rhizosphere under combined ocean warming and ocean acidification. While for one single environmental stress, simpler networks were detected in the rhizosphere. In addition, the observed significant correlations between several modules of the bacterial community and the physiological indexes of the seagrass indicate the possible intimate interaction between seagrass and bacteria under ocean warming and ocean acidification. This study extends our understanding regarding the role of seagrass associated bacterial communities and sheds light on both the prediction and preservation of the seagrass meadow ecosystems in response to global climate change.

Optimizing marine macrophyte capacity to locally ameliorate ocean acidification under variable light and flow regimes: Insights from an experimental approach

The urgent need to remediate ocean acidification has brought attention to the ability of marine macrophytes (seagrasses and seaweeds) to take up carbon dioxide (CO2) and locally raise seawater pH via primary production. This physiological process may represent a powerful ocean acidification mitigation tool in coastal areas. However, highly variable nearshore environmental conditions pose uncertainty in the extent of the amelioration effect. We developed experiments in aquaria to address two interconnected goals. First, we explored the individual capacities of four species of marine macrophytes (Ulva lactuca, Zostera marina, Fucus vesiculosus and Saccharina latissima) to ameliorate seawater acidity in experimentally elevated pCO2. Second, we used the most responsive species (i.e., S. latissima) to assess the effects of high and low water residence time on the amelioration of seawater acidity in ambient and simulated future scenarios of climate change across a gradient of irradiance. We measured changes in dissolved oxygen, pH, and total alkalinity, and derived resultant changes to dissolved inorganic carbon (DIC) and calcium carbonate saturation state (Ω). While all species increased productivity under elevated CO2, S. latissima was able to remove DIC and alter pH and Ω more substantially as CO2 increased. Additionally, the amelioration of seawater acidity by S. latissima was optimized under high irradiance and high residence time. However, the influence of water residence time was insignificant under future scenarios. Finally, we applied predictive models as a function of macrophyte biomass, irradiance, and residence time conditions in ambient and future climatic scenarios to allow projections at the ecosystem level. This research contributes to understanding the biological and physical drivers of the coastal CO2 system.

Brown seaweed Nemacystus decipiens intensifies the effects of ocean acidification on coral Montipora digitata

Photosynthetic marine macrophytes such as seaweeds have been proposed to provide habitat refugia for marine calcifiers against ocean acidification (OA) by increasing the local pH. However, the effectiveness of seaweed as a potential habitat refugia for marine calcifiers such as corals remains to be investigated. This study focused on the seaweed Nemacystus decipiens, which are widely farmed in the shallow reef lagoon of Okinawa coral reefs, Japan, and aimed to evaluate their response to high pCO2 and whether they can mitigate the effect of high pCO2 on the coral Montipora digitata. Corals were cultured with and without seaweed under control (300-400 μatm) or high pCO2 conditions (OA, 900-1000 μatm) for 2 weeks. Results showed that all photo-physiological parameters examined in the seaweed N. decipiens were not affected by high pCO2, suggesting that OA will not positively affect their productivity. The calcification rate of the coral M. digitata was found to decrease under OA and the effect was further exaggerated by the presence of seaweed. The present study suggests that farming seaweeds will not act as a potential habitat refugia for adjacent corals under future OA, but instead can exaggerate the negative effect of OA on coral calcification.

How does ocean acidification affect Zostera marina during a marine heatwave?

Extreme ocean events caused by global warming, such as marine heatwaves (MHWs) and ocean acidification (OA), are projected to intensify. A combination of extreme events may have severe consequences for marine ecosystems. Zostera marina was selected to understand how seagrass adapts to OA in extremely hot conditions. By combining morphology, transcriptomics, and metabolomics under mesoscale experimental conditions, we systematically investigated the response characteristics of Z. marina. Extremely high temperatures had a pronounced effect on growth, and the combined effect of OA mitigated the inhibitory effect of MHW. Both transcriptomic and metabolomic results showed that Z. marina resisted OA and MHW by upregulating the TCA cycle, glycolysis, amino acid metabolism, and relevant genes, as well as by activating the antioxidant system. The results of this study serve to improve our understanding of dual effects of factors of climate change on seagrass and may be used to direct future management and conservation efforts.

The Solent Strait: Water quality trends within a heavily trafficked marine environment, 2000 to 2020

This study presents an important long-term historical analysis of water quality in an internationally crucial waterway (the Solent, Hampshire, UK), in the context of increasing adoption of open-loop Exhaust Gas Cleaning Systems by shipping. The pollutants studied were acidification (pH), zinc, and benzo [a] pyrene, alongside temperature. We compared baseline sites to locations likely to be impacted by pollution. The Solent's average water temperature is slightly increasing, with temperatures at wastewater sites significantly higher. Acidification suggests a complex story, with a highly significant small overall increase in pH during the study period but significantly different values at wastewater and port sites. Zn concentrations have significantly reduced but increased in enclosed waters such as marinas. BaP showed no long-term trend with values at marinas significantly and consistently higher. The findings provide valuable long-term background data and insights that can feed into the upcoming review of the European Union's Marine Strategy Framework Directive and ongoing discussions about the regulation of, and future monitoring and management strategies for coastal/marine waterways.

Revealing mechanism and influence of microalgae cells' periodical auto-agglomeration induced by high concentration of carbon dioxide

The efficient cultivation of microalgae using CO₂ from flue gas can be a win-win situation for both environmental protection and energy accessibility. In general, 10-20% of CO₂ in flue gas would decrease pH and inhibit microalgae growth. However, Chlorella sorokiniana MB-1 under 15% CO₂ showed a periodical auto-agglomeration, which promoted microalgae growth on the contrary in this study. The maximum biomass concentration of 3.27 g L^-1 was higher than that cultivated with an optimal CO₂ concentration. The pH decreased to 6.04 after the mixed gas with 15% CO₂ (v/v) was bubbled into medium for 0.5 hours, which resulted in auto-agglomeration to protect microalgae from acidification and keep a high specific growth rate of 0.03 h^-1. Then the pH recovered to 7 during stabilization phase, auto-agglomeration ratio was up to 100% because of lamellar extracellular polymeric substances. Therefore, the interesting periodical agglomeration both enhanced growth and simplified harvesting.

Reconstructed life history metrics of the iconic seagrass Posidonia oceanica (L.) detect localized anthropogenic disturbance signatures

Substantial losses of the seagrass Posidonia oceanica have initiated investigations into localized resilience declines related to anthropogenic disturbances. In this study, we determined reconstructed shoot age and interannual growth metrics can detect anthropogenic impact effects on P. oceanica production. Interannual rhizome vertical growth, leaf production, and demographics of shoots collected from sewage and trawling impacted areas were examined using mixed effects modeling. Detected impact effects were specific to the type of impact, manifesting as an older-skewed age distribution of sewage outfall shoots and reduced vertical growth and reduced leaf production of trawling site shoots. A stress event period was also detected for all shoots >5 years old, with trawling impacted shoots indicating little recovery. Reconstructed age and growth metrics are simple to measure, incorporate multiple years of in situ shoot development, and are advantageous for identification of declining P. oceanica resilience prior to catastrophic losses.

Field development of Posidonia oceanica seedlings changes under predicted acidification conditions

Ocean acidification has been consistently evidenced to have profound and lasting impacts on marine species. Observations have shown seagrasses to be highly susceptible to future increased pCO₂ conditions, but the responses of early life stages as seedlings are poorly understood. This study aimed at evaluating how projected Mediterranean Sea acidification affects the survival, morphological and biochemical development of Posidonia oceanica seedlings through a long-term field experiment along a natural low pH gradient. Future ocean conditions seem to constrain the morphological development of seedlings. However, high pCO₂ exposures caused an initial increase in the degree of saturation of fatty acids in leaves and then improved the fatty acid adjustment increasing unsaturation levels in leaves (but not in seeds), suggesting a nutritional compound translocation. Results also suggested a P. oceanica structural components remodelling which may counteract the effects of ocean acidification but would not enhance seagrass seedling productivity.

Ocean acidification increases the impact of typhoons on algal communities

Long-term environmental change, sudden pulses of extreme perturbation, or a combination of both can trigger regime shifts by changing the processes and feedbacks which determine community assembly, structure, and function, altering the state of ecosystems. Our understanding of the mechanisms that stabilise against regime shifts or lock communities into altered states is limited, yet also critical to anticipating future states, preventing regime shifts, and reversing unwanted state change. Ocean acidification contributes to the restructuring and simplification of algal systems, however the mechanisms through which this occurs and whether additional drivers are involved requires further study. Using monthly surveys over three years at a shallow-water volcanic seep we examined how the composition of algal communities change seasonally and following periods of significant physical disturbance by typhoons at three levels of ocean acidification (equivalent to means of contemporary ∼350 and future ∼500 and 900 μatm pCO₂). Sites exposed to acidification were increasingly monopolised by structurally simple, fast-growing turf algae, and were clearly different to structurally complex macrophyte-dominated reference sites. The distinct contemporary and acidified community states were stabilised and maintained at their respective sites by different mechanisms following seasonal typhoon disturbance. Macroalgal-dominated sites were resistant to typhoon damage. In contrast, significant losses of algal biomass represented a near total ecosystem reset by typhoons for the turf-dominated communities at the elevated pCO₂ sites (i.e. negligible resistance). A combination of disturbance and subsequent turf recovery maintained the same simplified state between years (elevated CO₂ levels promote turf growth following algal removal, inhibiting macroalgal recruitment). Thus, ocean acidification may promote shifts in algal systems towards degraded ecosystem states, and short-term disturbances which reset successional trajectories may 'lock-in' these alternative states of low structural and functional diversity.

Carbon assimilation in upper subtidal macroalgae is determined by an inverse correlation between Rubisco carboxylation efficiency and CO2 concentrating mechanism effectiveness

Seaweeds have a wide ecophysiological and phylogenetic diversity with species expressing different Rubisco forms that frequently coexist with biophysical CO₂ concentrating mechanisms (CCMs), an adaptation that overcomes the low CO₂ availability and gas diffusion in seawater. Here, we assess the possible coevolution between the Rubisco catalysis and the type and effectiveness of CCMs present in six upper subtidal macroalgal species belonging to three phylogenetic groups of seaweeds. A wide diversity in the Rubisco kinetic traits was found across the analyzed species, although the specificity factor was the only parameter explained by the expressed Rubisco form. Differences in the catalytic trade-offs were found between Rubisco forms, indicating that ID Rubiscos could be better adapted to the intracellular O₂  : CO₂ ratio found in marine organisms during steady-state photosynthesis. The biophysical components of the CCMs also differed among macroalgal species, resulting in different effectiveness to concentrate CO₂ around Rubisco active sites. Interestingly, an inverse relationship was found between the effectiveness of CCMs and the in vitro Rubisco carboxylation efficiency, which possibly led to a similar carboxylation potential across the analyzed macroalgal species. Our results demonstrate a coevolution between Rubisco kinetics and CCMs across phylogenetically distant marine macroalgal species sharing the same environment.

Multi-temporal variability forecast of particulate organic carbon in the Indonesian seas

The current global condition characterized by high levels of CO₂ is altering the carbon cycle and elemental biogeochemistry, resulting in subsequent global warming, climate change, ocean acidification, and the indirect response of deoxygenation. The features of Indonesia's coastal ecosystems and continental shelf waters also contribute to spatio-temporal ocean carbon variability. For instance, the level of particulate organic carbon (POC) will change annually, and thus, over a decadal period, ocean dynamics may affect the temporal variability of POC. Motivated by such conditions, future forecasting is needed to envision the productivity of Indonesian seas by predicting vital parameters such as POC. This research aimed to forecast the temporal variability of POC in Indonesian waters. The Seasonal Autoregressive Integrated Moving Average (SARIMA) forecasting model was used by considering the lowest value of the Akaike information criterion (AIC) and the mean absolute percentage error/MAPE (threshold < 10%). Using the highest correlation coefficient (threshold: 0.75), we obtained the best fit for forecasting POC temporal variability. Hindcast POC data (2002-2020/2021) was used to train the forecasting model. The result shows that forecasting of POC temporal variability can be conducted up to 2030. The validity of prediction is ensured for less than 5 years forward after 2020 with correlation coefficients of 0.65 and 0.83 for seasonal and monthly POC, respectively. The hindcast and forecast estimates of POC in the Indonesian seas show a decreasing trend. The present study emphasizes the different forecasting results obtained using the different approaches of annual versus inter-annual variability. A sustained research effort is still required to assess POC forecasting for its potential benefits in marine system monitoring and assessment.

Limited trait responses of a tropical seagrass to the combination of increasing pCO2 and warming

Understanding species-specific trait responses under future global change scenarios is of importance for conservation efforts and to make informed decisions within management projects. The combined and single effects of seawater acidification and warmer average temperature were investigated by means of the trait responses of Cymodocea serrulata, a tropical seagrass, under experimental conditions. After a 35 d exposure period, biochemical, morphological, and photo-physiological trait responses were measured. Overall, biochemical traits mildly responded under the individual exposure to high temperature and increasing pCO2 values. The response of C. serrulata was limited to a decrease in %C and an increase in the sucrose content in the rhizome under the high temperature treatment, 32 °C. This suggests that this temperature was lower than the maximum tolerance limit for this species. Increasing pCO2 levels increased %C in the rhizome, and also showed a significant increase in leaf δ13C values. The effects of all treatments were sublethal; however, small changes in their traits could affect the ecosystem services they provide. In particular, changes in tissue carbon concentrations may affect carbon storage capacity, one key ecosystem service. The simultaneous study of different types of trait responses contributes to establish a holistic framework of seagrass ecosystem health under climate change.

Transcriptome analysis reveals the molecular mechanisms of adaptation to high temperatures in Gracilaria bailinae

Global warming causes great thermal stress to macroalgae and those species that can adapt to it are thought to be better able to cope with warmer oceans. Gracilaria bailinae, a macroalgae with high economic and ecological values, can survive through the hot summer in the South China Sea, but the molecular mechanisms underlying its adaptation to high temperatures are unclear. To address this issue, the present study analyzed the growth and transcriptome of G. bailinae after a 7-day exposure to 15°C (LT: low temperature), 25°C (MT: middle temperature), and 35°C (HT: high temperature). Growth analysis showed that the HT group had the highest relative growth rate (RGR = 2.1%) with the maximum photochemical quantum yield of PSII (F _v/F _m = 0.62) remaining within the normal range. Transcriptome analysis showed more differentially expressed genes (DEGs) in the comparison between MT and HT groups than in that between MT and LT, and most of these DEGs tended to be downregulated at higher temperatures. The KEGG pathway enrichment analysis showed that the DEGs were mainly enriched in the carbohydrate, energy, and lipid metabolisms. In addition, the genes involved in NADPH and ATP synthesis, which are associated with photosynthesis, the Calvin cycle, pyruvate metabolism, and the citrate cycle, were downregulated. Downregulation was also observed in genes that encode enzymes involved in fatty acid desaturation and alpha-linolenic acid metabolism. In summary, G. bailinae regulated the synthesis of NADPH and ATP, which are involved in the above-mentioned processes, to reduce unnecessary energy consumption, and limited the synthesis of enzymes in the metabolism of unsaturated fatty acids and alpha-linolenic acid to adapt to high environmental temperatures. The results of this study improve our understanding of the molecular mechanisms underlying the adaptation of G. bailinae to high temperatures.

Water motion and pH jointly impact the availability of dissolved inorganic carbon to macroalgae

The supply of dissolved inorganic carbon to seaweeds is a key factor regulating photosynthesis. Thinner diffusive boundary layers at the seaweed surface or greater seawater carbon dioxide (CO₂) concentrations increase CO₂ supply to the seaweed surface. This may benefit seaweeds by alleviating carbon limitation either via an increased supply of CO₂ that is taken up by passive diffusion, or via the down-regulation of active carbon concentrating mechanisms (CCMs) that enable the utilization of the abundant ion bicarbonate (HCO₃^-). Laboratory experiments showed that a 5 times increase in water motion increases DIC uptake efficiency in both a non-CCM (Hymenena palmata, Rhodophyta) and CCM (Xiphophora gladiata, Phaeophyceae) seaweed. In a field survey, brown and green seaweeds with active-CCMs maintained their CCM activity under diverse conditions of water motion. Whereas red seaweeds exhibited flexible photosynthetic rates depending on CO₂ availability, and species switched from a non-CCM strategy in wave-exposed sites to an active-CCM strategy in sheltered sites where mass transfer of CO₂ would be reduced. 97-99% of the seaweed assemblages at both wave-sheltered and exposed sites consisted of active-CCM species. Variable sensitivities to external CO₂ would drive different responses to increasing CO₂ availability, although dominance of the CCM-strategy suggests this will have minimal impact within shallow seaweed assemblages.

Evaluation of growth, primary productivity, nutritional composition, redox state, and antimicrobial activity of red seaweeds Gracilaria debilis and Gracilaria foliifera under pCO2-induced seawater acidification

The genus Gracilaria is an economically important group of seaweeds as several species are utilized for various products such as agar, used in medicines, human diets, and poultry feed. Hence, it is imperative to understand their response to predicted ocean acidification conditions. In the present work, we have evaluated the response of Gracilaria foliifera and Gracilaria debilis to carbon dioxide (pCO₂) induced seawater acidification (pH 7.7) for two weeks in a controlled laboratory conditions. As a response variable, we have measured growth, productivity, redox state, primary and secondary metabolites, and mineral compositions. We found a general increase in the daily growth rate, primary productivity, and tissue chemical composition (such as pigments, soluble and insoluble sugars, amino acids, and fatty acids), but a decrease in the mineral contents under the acidified condition. Under acidification, there was a decrease in malondialdehyde. However, there were no significant changes in the total antioxidant capacity and a majority of enzymatic and non-enzymatic antioxidants, except for an increase in tocopherols, ascorbate and glutathione-s-transferase in G. foliifera. These results indicate that elevated pCO₂ will benefit the growth of the studied species. No sign of oxidative stress markers indicating the acclimatory response of these seaweeds towards lowered pH conditions. Besides, we also found increased antimicrobial activities of acidified samples against several of the tested food pathogens. Based on these observations, we suggest that Gracilaria spp. will be benefitted from the predicted future acidified ocean.

Responses of the Macroalga Ulva prolifera Müller to Ocean Acidification Revealed by Complementary NMR- and MS-Based Omics Approaches

Ocean acidification (OA) is a dramatic perturbation of seawater environments due to increasing anthropogenic emissions of CO₂. Several studies indicated that OA frequently induces marine biota stress and a reduction of biodiversity. Here, we adopted the macroalga Ulva prolifera as a model and applied a complementary multi-omics approach to investigate the metabolic profiles under normal and acidified conditions. Our results show that U. prolifera grows at higher rates in acidified environments. Consistently, we observed lower sucrose and phosphocreatine concentrations in response to a higher demand of energy for growth and a higher availability of essential amino acids, likely related to increased protein biosynthesis. In addition, pathways leading to signaling and deterrent compounds appeared perturbed. Finally, a remarkable shift was observed here for the first time in the fatty acid composition of triglycerides, with a decrease in the relative abundance of PUFAs towards an appreciable increase of palmitic acid, thus suggesting a remodeling in lipid biosynthesis. Overall, our studies revealed modulation of several biosynthetic pathways under OA conditions in which, besides the possible effects on the marine ecosystem, the metabolic changes of the alga should be taken into account considering its potential nutraceutical applications.

Photorespiration in eelgrass (Zostera marina L.): A photoprotection mechanism for survival in a CO2-limited world

Photorespiration, commonly viewed as a loss in photosynthetic productivity of C3 plants, is expected to decline with increasing atmospheric CO₂, even though photorespiration plays an important role in the oxidative stress responses. This study aimed to quantify the role of photorespiration and alternative photoprotection mechanisms in Zostera marina L. (eelgrass), a carbon-limited marine C3 plant, in response to ocean acidification. Plants were grown in controlled outdoor aquaria at different [CO₂]_aq ranging from ~55 (ambient) to ~2121 μM for 13 months and compared for differences in leaf photochemistry by simultaneous measurements of O₂ flux and variable fluorescence. At ambient [CO₂], photosynthesis was carbon limited and the excess photon absorption was diverted both to photorespiration and non-photochemical quenching (NPQ). The dynamic range of NPQ regulation in ambient grown plants, in response to instantaneous changes in [CO₂]_aq, suggested considerable tolerance for fluctuating environmental conditions. However, 60 to 80% of maximum photosynthetic capacity of ambient plants was diverted to photorespiration resulting in limited carbon fixation. The photosynthesis to respiration ratio (P _E : R _D) of ambient grown plants increased 6-fold when measured under high CO₂ because photorespiration was virtually suppressed. Plants acclimated to high CO₂ maintained 4-fold higher P _E : R _D than ambient grown plants as a result of a 60% reduction in photorespiration. The O₂ production efficiency per unit chlorophyll was not affected by the CO₂ environment in which the plants were grown. Yet, CO₂ enrichment decreased the light level to initiate NPQ activity and downregulated the biomass specific pigment content by 50% and area specific pigment content by 30%. Thus, phenotypic acclimation to ocean carbonation in eelgrass, indicating the coupling between the regulation of photosynthetic structure and metabolic carbon demands, involved the downregulation of light harvesting by the photosynthetic apparatus, a reduction in the role of photorespiration and an increase in the role of NPQ in photoprotection. The quasi-mechanistic model developed in this study permits integration of photosynthetic and morphological acclimation to ocean carbonation into seagrass productivity models, by adjusting the limits of the photosynthetic parameters based on substrate availability and physiological capacity.

Negative effects of a zoanthid competitor limit coral calcification more than ocean acidification

Ocean acidification (OA) threatens the persistence of reef-building corals and the habitat they provide. While species-specific effects of OA on marine organisms could have cascading effects on ecological interactions like competition, few studies have identified how benthic reef competitors respond to OA. We explored how two common Caribbean competitors, branching Porites and a colonial zoanthid (Zoanthus), respond to the factorial combination of OA and competition. In the laboratory, we exposed corals, zoanthids and interacting corals and zoanthids to ambient (8.01 ± 0.03) and OA (7.68 ± 0.07) conditions for 60 days. The OA treatment had no measured effect on zoanthids or coral calcification but decreased Porites maximum PSII efficiency. Conversely, the competitive interaction significantly decreased Porites calcification but had minimal-to-no countereffects on the zoanthid. Although this interaction was not exacerbated by the 60-day OA exposure, environmental changes that enhance zoanthid performance could add to the dominance of zoanthids over corals. The lack of effects of OA on coral calcification indicates that near-term competitive interactions may have more immediate consequences for some corals than future global change scenarios. Disparate consequences of competition have implications for community structure and should be accounted for when evaluating local coral reef trajectories.