1
|
Wang Q, Zhang H, Wei L, Guo R, Liu X, Zhang M, Fan J, Liu S, Liao J, Huang Y, Wang Z. Yellow-Green Leaf 19 Encoding a Specific and Conservative Protein for Photosynthetic Organisms Affects Tetrapyrrole Biosynthesis, Photosynthesis, and Reactive Oxygen Species Metabolism in Rice. Int J Mol Sci 2023; 24:16762. [PMID: 38069084 PMCID: PMC10706213 DOI: 10.3390/ijms242316762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 11/21/2023] [Accepted: 11/23/2023] [Indexed: 12/18/2023] Open
Abstract
Chlorophyll is the main photosynthetic pigment and is crucial for plant photosynthesis. Leaf color mutants are widely used to identify genes involved in the synthesis or metabolism of chlorophyll. In this study, a spontaneous mutant, yellow-green leaf 19 (ygl19), was isolated from rice (Oryza sativa). This ygl19 mutant showed yellow-green leaves and decreased chlorophyll level and net photosynthetic rate. Brown necrotic spots appeared on the surface of ygl19 leaves at the tillering stage. And the agronomic traits of the ygl19 mutant, including the plant height, tiller number per plant, and total number of grains per plant, were significantly reduced. Map-based cloning revealed that the candidate YGL19 gene was LOC_Os03g21370. Complementation of the ygl19 mutant with the wild-type CDS of LOC_Os03g21370 led to the restoration of the mutant to the normal phenotype. Evolutionary analysis revealed that YGL19 protein and its homologues were unique for photoautotrophs, containing a conserved Ycf54 functional domain. A conserved amino acid substitution from proline to serine on the Ycf54 domain led to the ygl19 mutation. Sequence analysis of the YGL19 gene in 4726 rice accessions found that the YGL19 gene was conserved in natural rice variants with no resulting amino acid variation. The YGL19 gene was mainly expressed in green tissues, especially in leaf organs. And the YGL19 protein was localized in the chloroplast for function. Gene expression analysis via qRT-PCR showed that the expression levels of tetrapyrrole synthesis-related genes and photosynthesis-related genes were regulated in the ygl19 mutant. Reactive oxygen species (ROS) such as superoxide anions and hydrogen peroxide accumulated in spotted leaves of the ygl19 mutant at the tillering stage, accompanied by the regulation of ROS scavenging enzyme-encoding genes and ROS-responsive defense signaling genes. This study demonstrates that a novel yellow-green leaf gene YGL19 affects tetrapyrrole biosynthesis, photosynthesis, and ROS metabolism in rice.
Collapse
Affiliation(s)
- Qiang Wang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Hongyu Zhang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Lingxia Wei
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Rong Guo
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Xuanzhi Liu
- College of Agronomy, Jiangxi Agricultural University, Nanchang 330045, China; (X.L.); (M.Z.)
| | - Miao Zhang
- College of Agronomy, Jiangxi Agricultural University, Nanchang 330045, China; (X.L.); (M.Z.)
| | - Jiangmin Fan
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Siyi Liu
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Jianglin Liao
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Yingjin Huang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| | - Zhaohai Wang
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education of the P.R. China, Jiangxi Agricultural University, Nanchang 330045, China; (Q.W.); (H.Z.); (L.W.); (R.G.); (J.F.); (S.L.); (J.L.)
- Key Laboratory of Agriculture Responding to Climate Change, Jiangxi Agricultural University, Nanchang 330045, China
| |
Collapse
|
2
|
Jalili S, Ehsanpour AA, Morteza Javadirad S. Melatonin improves salt tolerance of in vitro root culture of alfalfa (Medicago sativa L.). Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01275-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
|
3
|
Jalili S, Ehsanpour AA, Javadirad SM. The role of melatonin on caspase-3-like activity and expression of the genes involved in programmed cell death (PCD) induced by in vitro salt stress in alfalfa (Medicago sativa L.) roots. BOTANICAL STUDIES 2022; 63:19. [PMID: 35689706 PMCID: PMC9188634 DOI: 10.1186/s40529-022-00348-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Accepted: 05/17/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Alfalfa (Medicago sativa L.) is the most cultivated forage plant as a model in legumes. Salinity stress due to Na+ toxicity causes severe, oxidative stress as a main reason for program cell death (PCD) in plants. Melatonin application can increase plant productivity in response to diverse stressors via modulating plant antioxidant mechanisms and PCD inhibition in plants. RESULTS Alfalfa roots were subjected to different concentrations of in vitro salinity supplemented with melatonin (0.1, 10 and 15 µM) for ten days. Application of melatonin under salinity stress reduced ROS, H2O2 and [Formula: see text] content and showed a dramatic impact on TTC reduction and augmented cell viability. Interestingly, melatonin inhibited caspase 3-like protease activity and could decrease DNA fragmentation induced by salinity while increased expression of anti-apoptotic genes BI-1, UCP1-UCP2 involved in PCD pathway. In contrast, in 300 mM salinity, γVPE gene as a proapoptotic of PCD down-regulated significantly. CONCLUSIONS For the first time, present data showed that, melatonin plays a major function in preventing PCD in alfalfa root meristem cells. We attempted to offer a mechanism for the function of melatonin as an anti-apoptotic agent by demonstrating significant actions of melatonin on mitochondria proteins, such as UCPs, in a manner similar to animal cells.
Collapse
Affiliation(s)
- Shabnam Jalili
- Department of Plant and Animal Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran
| | - Ali Akbar Ehsanpour
- Department of Plant and Animal Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran.
| | - Seyed Morteza Javadirad
- Department of Cell and Molecular Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran
| |
Collapse
|
4
|
High Light Acclimation Mechanisms Deficient in a PsbS-Knockout Arabidopsis Mutant. Int J Mol Sci 2022; 23:ijms23052695. [PMID: 35269832 PMCID: PMC8910700 DOI: 10.3390/ijms23052695] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 02/25/2022] [Accepted: 02/26/2022] [Indexed: 12/02/2022] Open
Abstract
The photosystem II PsbS protein of thylakoid membranes is responsible for regulating the energy-dependent, non-photochemical quenching of excess chlorophyll excited states as a short-term mechanism for protection against high light (HL) stress. However, the role of PsbS protein in long-term HL acclimation processes remains poorly understood. Here we investigate the role of PsbS protein during long-term HL acclimation processes in wild-type (WT) and npq4-1 mutants of Arabidopsis which lack the PsbS protein. During long-term HL illumination, photosystem II photochemical efficiency initially dropped, followed by a recovery of electron transport and photochemical quenching (qL) in WT, but not in npq4-1 mutants. In addition, we observed a reduction in light-harvesting antenna size during HL treatment that ceased after HL treatment in WT, but not in npq4-1 mutants. When plants were adapted to HL, more reactive oxygen species (ROS) were accumulated in npq4-1 mutants compared to WT. Gene expression studies indicated that npq4-1 mutants failed to express genes involved in plastoquinone biosynthesis. These results suggest that the PsbS protein regulates recovery processes such as electron transport and qL during long-term HL acclimation by maintaining plastoquinone biosynthetic gene expression and enhancing ROS homeostasis.
Collapse
|
5
|
Detoxification of phenanthrene in Arabidopsis thaliana involves a Dioxygenase For Auxin Oxidation 1 (AtDAO1). J Biotechnol 2021; 342:36-44. [PMID: 34610365 DOI: 10.1016/j.jbiotec.2021.09.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 09/19/2021] [Accepted: 09/22/2021] [Indexed: 11/22/2022]
Abstract
Polycyclic aromatic hydrocarbon (PAH) contamination has a negative impact on ecosystems. PAHs are a large group of toxins with two or more benzene rings that are persistent in the environment. Some PAHs can be cytotoxic, teratogenic, and/or carcinogenic. In the bacterium Pseudomonas, PAHs can be modified by dioxygenases, which increase the reactivity of PAHs. We hypothesize that some plant dioxygenases are capable of PAH biodegradation. Herein, we investigate the involvement of Arabidopsis thaliana At1g14130 in the degradation of phenanthrene, our model PAH. The At1g14130 gene encodes Dioxygenase For Auxin Oxidation 1 (AtDAO1), an enzyme involved in the oxidative inactivation of the hormone auxin. Expression analysis using a β-glucuronidase (GUS) reporter revealed that At1g14130 is prominently expressed in new leaves of plants exposed to media with phenanthrene. Analysis of the oxidative state of gain-of-function mutants showed elevated levels of H2O2 after phenanthrene treatments, probably due to an increase in the oxidation of phenanthrene by AtDAO1. Biochemical assays with purified AtDAO1 and phenanthrene suggest an enzymatic activity towards the PAH. Thus, data presented in this study support the hypothesis that an auxin dioxygenase, AtDAO1, from Arabidopsis thaliana contributes to the degradation of phenanthrene and that there is possible toxic metabolite accumulation after PAH exposure.
Collapse
|
6
|
Singh P, Kannaujia R, Narayan S, Tewari A, Shirke PA, Pandey V. Impact of chronic elevated ozone exposure on photosynthetic traits and anti-oxidative defense responses of Leucaena leucocephala (Lam.) de wit tree under field conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 782:146907. [PMID: 33848871 DOI: 10.1016/j.scitotenv.2021.146907] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 03/26/2021] [Accepted: 03/29/2021] [Indexed: 06/12/2023]
Abstract
In this study, the impact of long term exposure of elevated ozone (+20 ppb above ambient) on photosynthetic traits and anti-oxidative defense system of Leucaena leucocephala, a tree of great economic importance, was studied in a Free Air Ozone Concentration Enrichment (O3-FACE) facility at different time intervals (6, 12, 18, and 24 months). Results showed that net photosynthesis, photosynthetic pigments and lipid peroxidation were significantly reduced after 6, 12 and 24 months of exposure to elevated ozone (eO3) whereas stomatal conductance and transpiration rate were significantly decreased after 12 months of exposure to eO3. Antioxidant enzymatic activities (catalase, ascorbate peroxidase and glutathione reductase) were significantly increased after 12 months of exposure to eO3. Ascorbate was increased significantly after 6 and 12 months of exposure to eO3 while reduced glutathione content declined significantly after 6 and 24 months of exposure to eO3. The study showed that there were several negative long lasting physiological and biochemical responses in Leucaena. The results provide evidence that Leucaena exhibited greater sensitivity to O3 during initial exposure (up to 12 months) but showed moderate tolerance by the end of the 2nd year.
Collapse
Affiliation(s)
- Pratiksha Singh
- Plant Ecology and Climate Change Science Division, CSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh 226001, India; Department of Forestry & Environmental Science, D.S.B. campus, Kumaun University, Nainital, Uttarakhand 263001, India
| | - Rekha Kannaujia
- Plant Ecology and Climate Change Science Division, CSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh 226001, India
| | - Shiv Narayan
- Plant Physiology Laboratory, CSIR- National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Ashish Tewari
- Department of Forestry & Environmental Science, D.S.B. campus, Kumaun University, Nainital, Uttarakhand 263001, India
| | - Pramod A Shirke
- Plant Physiology Laboratory, CSIR- National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Vivek Pandey
- Plant Ecology and Climate Change Science Division, CSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
| |
Collapse
|
7
|
Niu Y, Li X, Xu C, Ajab Z, Liu Q, Majeed Z, Guan Q. Analysis of drought and salt-alkali tolerance in tobacco by overexpressing WRKY39 gene from Populus trichocarpa. PLANT SIGNALING & BEHAVIOR 2021; 16:1918885. [PMID: 33904377 PMCID: PMC8205067 DOI: 10.1080/15592324.2021.1918885] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 04/12/2021] [Accepted: 04/14/2021] [Indexed: 06/12/2023]
Abstract
WRKY is one of the largest families of transcription factors in plants. It not only regulates plant growth and development but also participates in the regulation of plant defense against biological and abiotic stresses. In this study, research was aimed to overexpress WRKY39 gene of P. trichocarpa (PtWRKY39) and to identify its important role played in drought and saline-alkali tolerance in tobacco model plant. Under the control of CaMV35S promoter, the overexpression of PtWRKY39 gene was increased to more than 10 times in T3 generation of transgenic tobacco plant. The drought resistance and saline-alkali tolerance were evidenced in overexpressed PtWRKY39 transgenic lines at germination/seedling stage. The overall germination rate, fresh weight, and chlorophyll contents of overexpressed lines were significantly higher while the level of malondialdehyde was significantly lower in PtWRKY39 transgenic lines than that of wild type (WT) lines. The content of H2O2 in leaves was detected by the 3, 3-Diaminobenzidine method showed that the overexpression of PtWRKY39 gene could reduce the accumulation of ROS (mainly H2O2) and enhance salt-alkali tolerance. Phenotypic analysis at 7-leaf pot transgenic seedlings stage treated with the saline-alkali soil extract and salt NaCl under root irrigation stress, revealed growth of the transgenic line was significantly higher than that of WT. This work concludes that overexpression of PtWRKY39 gene can improve the regulation of drought resistance and saline-alkali tolerance of transgenic plants during seed germination and vegetative growth.
Collapse
Affiliation(s)
- Youtao Niu
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Xueting Li
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Chen Xu
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Zainab Ajab
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Qiang Liu
- School of Life Sciences, Jilin Normal University, Siping, Jilin, China
| | - Zahid Majeed
- Department of Biotechnology, The University of Azad Jammu and Kashmir, Muzaffarabad, Pakistan
| | - Qingjie Guan
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, Heilongjiang, China
| |
Collapse
|
8
|
León J, Gayubas B, Castillo MC. Valine-Glutamine Proteins in Plant Responses to Oxygen and Nitric Oxide. FRONTIERS IN PLANT SCIENCE 2021; 11:632678. [PMID: 33603762 PMCID: PMC7884903 DOI: 10.3389/fpls.2020.632678] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 12/31/2020] [Indexed: 06/01/2023]
Abstract
Multigene families coding for valine-glutamine (VQ) proteins have been identified in all kind of plants but chlorophytes. VQ proteins are transcriptional regulators, which often interact with WRKY transcription factors to regulate gene expression sometimes modulated by reversible phosphorylation. Different VQ-WRKY complexes regulate defense against varied pathogens as well as responses to osmotic stress and extreme temperatures. However, despite these well-known functions, new regulatory activities for VQ proteins are still to be explored. Searching public Arabidopsis thaliana transcriptome data for new potential targets of VQ-WRKY regulation allowed us identifying several VQ protein and WRKY factor encoding genes that were differentially expressed in oxygen-related processes such as responses to hypoxia or ozone-triggered oxidative stress. Moreover, some of those were also differentially regulated upon nitric oxide (NO) treatment. These subsets of VQ and WRKY proteins might combine into different VQ-WRKY complexes, thus representing a potential regulatory core of NO-modulated and O2-modulated responses. Given the increasing relevance that gasotransmitters are gaining as plant physiology regulators, and particularly considering the key roles exerted by O2 and NO in regulating the N-degron pathway-controlled stability of transcription factors, VQ and WRKY proteins could be instrumental in regulating manifold processes in plants.
Collapse
|
9
|
Jeon J, Baek SA, Kim NS, Sathasivam R, Park JS, Kim JK, Park SU. Elevated Ozone Levels Affect Metabolites and Related Biosynthetic Genes in Tartary Buckwheat. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:14758-14767. [PMID: 33264023 DOI: 10.1021/acs.jafc.0c04716] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Global climate change and the industrial revolution have increased the concentration of tropospheric ozone, a photochemical air pollutant that can negatively affect plant growth and crop production. In the present study, we investigated the effects of O3 on the metabolites and transcripts of tartary buckwheat. A total of 36 metabolites were identified by gas chromatography coupled with time-of-flight mass spectrometry, and principal component analysis was performed to verify the metabolic differences between nontreated and O3-treated tartary buckwheat. The content of threonic acid increased after 2 days of the O3 treatment, whereas it decreased after 4 days of exposure, after which it gradually increased until the eighth day of exposure. In addition, the levels of most metabolites decreased significantly after the O3 treatment. On the contrary, the levels of two anthocyanins, cyanidin-3-O-glucoside and cyanidin-3-O-rutinoside, increased more than 11.36- and 11.43-fold, respectively, after the O3 treatment. To assess the effect of O3 on the genomic level, we analyzed the expression of anthocyanin biosynthesis pathway genes in O3-treated and nontreated buckwheat using quantitative real-time reverse transcription polymerase chain reaction (PCR). We found that the expression of all anthocyanin pathway genes increased significantly in the O3-treated buckwheat compared to that in the nontreated buckwheat. Altogether, our results suggested that O3 affected the transcripts and metabolites of tartary buckwheat, which would eventually cause phenotypic changes in plants.
Collapse
Affiliation(s)
- Jin Jeon
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea
| | - Seung-A Baek
- Division of Life Sciences and Bio-Resource and Environmental Center, College of Life Sciences and Bioengineering, Incheon National University, Yeonsu-gu, Incheon 22012, Korea
| | - Nam Su Kim
- Department of Smart Agriculture Systems, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea
| | - Ramaraj Sathasivam
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea
| | - Jong Seok Park
- Department of Horticultural Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea
| | - Jae Kwang Kim
- Division of Life Sciences and Bio-Resource and Environmental Center, College of Life Sciences and Bioengineering, Incheon National University, Yeonsu-gu, Incheon 22012, Korea
| | - Sang Un Park
- Department of Crop Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea
- Department of Smart Agriculture Systems, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea
| |
Collapse
|
10
|
Wu S, Wang Y, Zhang J, Wang Y, Yang Y, Chen X, Wang Y. How does Malus crabapple resist ozone? Transcriptomics and metabolomics analyses. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 201:110832. [PMID: 32563158 DOI: 10.1016/j.ecoenv.2020.110832] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 05/28/2020] [Accepted: 05/29/2020] [Indexed: 06/11/2023]
Abstract
Ozone (O3), an oxidizing toxic air pollutant, is ubiquitous in industrialized and developing countries. To understand the effects of O3 exposure on apple (Malus) and to explore its defense mechanisms, we exposed 'Hongjiu' crabapple to O3 and monitored its responses using physiological, transcriptomics, and metabolomics analyses. Exposure to 300 nL L-1 O3 for 3 h caused obvious damage to the leaves of Malus crabapple, affected chlorophyll and anthocyanin contents, and activated antioxidant enzymes. The gene encoding phospholipase A was highly responsive to O3 in Malus crabapple. McWRKY75 is a key transcription factor in the response to O3 stress, and its transcript levels were positively correlated with those of flavonoid-related structural genes (McC4H, McDFR, and McANR). The ethylene response factors McERF019 and McERF109-like were also up-regulated by O3. Exogenous methyl jasmonate (MeJA) decreased the damaging effects of O3 on crabapple and was most effective at 200 μmol L -1. Treatments with MeJA altered the metabolic pathways of crabapple under O3 stress. In particular, MeJA activated the flavonoid metabolic pathway in Malus, which improved its resistance to O3 stress.
Collapse
Affiliation(s)
- Shuqing Wu
- College of Forestry, Shandong Agricultural University, Tai-An, 271000, China; State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Tai-An, 271000, China
| | - Yao Wang
- College of Forestry, Shandong Agricultural University, Tai-An, 271000, China; State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Tai-An, 271000, China
| | - Junkang Zhang
- College of Forestry, Shandong Agricultural University, Tai-An, 271000, China; State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Tai-An, 271000, China
| | - Yicheng Wang
- Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, 271000, China
| | - Yuwei Yang
- College of Forestry, Shandong Agricultural University, Tai-An, 271000, China; State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Tai-An, 271000, China
| | - Xuesen Chen
- Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, 271000, China.
| | - Yanling Wang
- College of Forestry, Shandong Agricultural University, Tai-An, 271000, China; State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Tai-An, 271000, China.
| |
Collapse
|
11
|
Soltani N, Best T, Grace D, Nelms C, Shumaker K, Romero-Severson J, Moses D, Schuster S, Staton M, Carlson J, Gwinn K. Transcriptome profiles of Quercus rubra responding to increased O 3 stress. BMC Genomics 2020; 21:160. [PMID: 32059640 PMCID: PMC7023784 DOI: 10.1186/s12864-020-6549-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Accepted: 01/31/2020] [Indexed: 11/18/2022] Open
Abstract
BACKGROUND Climate plays an essential role in forest health, and climate change may increase forest productivity losses due to abiotic and biotic stress. Increased temperature leads to the increased formation of ozone (O3). Ozone is formed by the interaction of sunlight, molecular oxygen and by the reactions of chemicals commonly found in industrial and automobile emissions such as nitrogen oxides and volatile organic compounds. Although it is well known that productivity of Northern red oak (Quercus rubra) (NRO), an ecologically and economically important species in the forests of eastern North America, is reduced by exposure to O3, limited information is available on its responses to exogenous stimuli at the level of gene expression. RESULTS RNA sequencing yielded more than 323 million high-quality raw sequence reads. De novo assembly generated 52,662 unigenes, of which more than 42,000 sequences could be annotated through homology-based searches. A total of 4140 differential expressed genes (DEGs) were detected in response to O3 stress, as compared to their respective controls. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses of the O3-response DEGs revealed perturbation of several biological pathways including energy, lipid, amino acid, carbohydrate and terpenoid metabolism as well as plant-pathogen interaction. CONCLUSION This study provides the first reference transcriptome for NRO and initial insights into the genomic responses of NRO to O3. Gene expression profiling reveals altered primary and secondary metabolism of NRO seedlings, including known defense responses such as terpenoid biosynthesis.
Collapse
Affiliation(s)
- Nourolah Soltani
- The Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, 37996, USA
| | - Teo Best
- The Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA, 16802, USA
| | - Dantria Grace
- Department of Biological & Environmental Sciences, University of West Alabama, Livingston, AL, 35470, USA
| | - Christen Nelms
- Department of Biological & Environmental Sciences, University of West Alabama, Livingston, AL, 35470, USA
| | - Ketia Shumaker
- Department of Biological & Environmental Sciences, University of West Alabama, Livingston, AL, 35470, USA
| | | | - Daniela Moses
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE) Nanyang Technological University, Nanyang Avenue, 637551, Singapore
| | - Stephan Schuster
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE) Nanyang Technological University, Nanyang Avenue, 637551, Singapore
| | - Margaret Staton
- The Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, 37996, USA.
| | - John Carlson
- The Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA, 16802, USA.
| | - Kimberly Gwinn
- The Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, 37996, USA.
| |
Collapse
|
12
|
Qiu Y, An K, Sun J, Chen X, Gong X, Ma L, Wu S, Jiang S, Zhang Z, Wang Y. Investigating the effect of methyl jasmonate and melatonin on resistance of Malus crabapple 'Hong Jiu' to ozone stress. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:27761-27768. [PMID: 31342350 DOI: 10.1007/s11356-019-05946-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 07/11/2019] [Indexed: 06/10/2023]
Abstract
Ozone (O3) is an adverse environmental factor posing damage to ornamental plants. Thus, it is important to seek an effective way of enhancing plant tolerance to O3-induced damage. Methyl jasmonate (MJ) and melatonin (MT) are plant growth regulators (PGRs) involved in plant abiotic stress responses. In this study, compared with the control group of plants without ozone, the influence of exogenous MJ (0, 10, 50, 100, and 150 μM) and MT (0, 0.1, 0.5, 2.5, and 12.5 μM) on the resistance of Malus crabapple 'Hong Jiu' was evaluated under O3 stress (100 ± 10 nL/L for 3 h). Our data revealed that levels of MDA were significantly enhanced following O3 treatment compared with plants without O3. O3 induced the activities of antioxidant enzymes and the accumulation of non-enzymatic antioxidants. While lower malondialdehyde (MDA) content, greater activities of antioxidant enzymes, and higher levels of soluble protein and non-enzymatic antioxidants were observed in PGRs-pretreated plants than in non-PGRs-pretreated plants under O3 stress. Based on the above results and air pollution tolerance index (APTI), an exogenous supply of MJ and MT to Malus crabapple 'Hong Jiu' seedlings was protective for O3-induced toxicity. The present study provides new insights into the mechanisms of MJ and MT amelioration of O3-induced oxidative stress damages in Malus crabapple 'Hong Jiu.'
Collapse
Affiliation(s)
- Yanfen Qiu
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China
| | - Kai An
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China
| | - Jingjing Sun
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China
| | - Xuesen Chen
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Xiaojun Gong
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China
| | - Li Ma
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China
| | - Shuqing Wu
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China
| | - Shenghui Jiang
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Zongying Zhang
- State Key Laboratory of Crop Biology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong, China
| | - Yanling Wang
- College of Forestry, Shandong Agricultural University, Tai-An, Shandong, China.
| |
Collapse
|
13
|
Lipid production in Dunaliella salina under autotrophic, heterotrophic, and mixotrophic conditions. Biologia (Bratisl) 2019. [DOI: 10.2478/s11756-019-00336-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
|
14
|
Zhang K, Wang G, Bao M, Wang L, Xie X. Exogenous application of ascorbic acid mitigates cadmium toxicity and uptake in Maize (Zea mays L.). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:19261-19271. [PMID: 31065988 DOI: 10.1007/s11356-019-05265-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Accepted: 04/23/2019] [Indexed: 05/20/2023]
Abstract
Cadmium (Cd) contamination in agricultural soils is a prevalent environmental issue and poses potential threats to food security. Foliar ascorbic acid might prove a potent tool to alleviate toxicity of Cd toxicity in maize. An experiment was conducted with objectives to study exogenous ascorbic acid-modulated improvements in physiochemical attributes of maize under Cd toxicity. The experiment was conducted under completely randomized design. Treatments were comprised of varying concentrations of foliar ascorbic acid viz. 0.0, 0.1, 0.3, and 0.5 mM of AsA. Toxicity of Cd decreased the maize growth, increased lipid peroxidation, disturbed protein metabolism, and reduced the antioxidant defense capabilities compared with the control. However, foliar AsA significantly improved maize growth and development, photosynthetic capabilities, and protein concentrations in Cd-stressed maize plants. Meanwhile, the malondialdehyde contents and hydrogen peroxide accumulation levels in Cd-stressed maize plants decreased remarkably with increasing AsA concentrations. Furthermore, the combined treatments conspicuously boosted activities of superoxide dismutase, peroxidase, catalase, and glutathione reductase under the Cd stress alone. In addition, the application of AsA reduced the Cd uptake by 10.3-12.3% in grains. Conclusively, foliar ascorbic acid alleviated the negative effects of Cd stress in maize and improved photosynthetic processes, osmolytes, and antioxidant defense systems.
Collapse
Affiliation(s)
- Kangping Zhang
- College of Agronomy and Biotechnology, Ministry of Education, Southwest University/Engineering Research Center of South Upland Agriculture, Chongqing, 400716, China
| | - Guiyin Wang
- College of Environmental Science, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Mingchen Bao
- College of Agronomy and Biotechnology, Ministry of Education, Southwest University/Engineering Research Center of South Upland Agriculture, Chongqing, 400716, China
| | - Longchang Wang
- College of Agronomy and Biotechnology, Ministry of Education, Southwest University/Engineering Research Center of South Upland Agriculture, Chongqing, 400716, China.
| | - Xiaoyu Xie
- College of Agronomy and Biotechnology, Ministry of Education, Southwest University/Engineering Research Center of South Upland Agriculture, Chongqing, 400716, China.
| |
Collapse
|
15
|
Li C, Song Y, Guo L, Gu X, Muminov MA, Wang T. Nitric oxide alleviates wheat yield reduction by protecting photosynthetic system from oxidation of ozone pollution. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 236:296-303. [PMID: 29414351 DOI: 10.1016/j.envpol.2018.01.093] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 01/25/2018] [Accepted: 01/28/2018] [Indexed: 06/08/2023]
Abstract
Accelerated industrialization has been increasing releases of chemical precursors of ozone. Ozone concentration has risen nowadays, and it's predicted that this trend will continue in the next few decades. The yield of many ozone-sensitive crops suffers seriously from ozone pollution, and there are abundant reports exploring the damage mechanisms of ozone to these crops, such as winter wheat. However, little is known on how to alleviate these negative impacts to increase grain production under elevated ozone. Nitric oxide, as a bioactive gaseous, mediates a variety of physiological processes and plays a central role in response to biotic and abiotic stresses. In the present study, the accumulation of endogenous nitric oxide in wheat leaves was found to increase in response to ozone. To study the functions of nitric oxide, its precursor sodium nitroprusside was spayed to wheat leaves under ozone pollution. Wheat leaves spayed with sodium nitroprusside accumulated less hydrogen peroxide, malondialdehyde and electrolyte leakage under ozone pollution, which can be accounted for by the higher activities of superoxide dismutase and peroxidase than in leaves treated without sodium nitroprusside. Consequently, net photosynthetic rate of wheat treated using sodium nitroprusside was much higher, and yield reduction was alleviated under ozone fumigation. These findings are important for our understanding of the potential roles of nitric oxide in responses of crops in general and wheat in particular to ozone pollution, and provide a viable method to mitigate the detrimental effects on crop production induced by ozone pollution, which is valuable for keeping food security worldwide.
Collapse
Affiliation(s)
- Caihong Li
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, PR China
| | - Yanjie Song
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, PR China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Liyue Guo
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, PR China
| | - Xian Gu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, PR China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Mahmud A Muminov
- Laboratory of Environmental Problems, Samarkand State University, Samarkand, Uzbekistan
| | - Tianzuo Wang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, PR China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, PR China.
| |
Collapse
|
16
|
Zhang L, Xu B, Wu T, Wen MX, Fan LX, Feng ZZ, Paoletti E. Transcriptomic analysis of Pak Choi under acute ozone exposure revealed regulatory mechanism against ozone stress. BMC PLANT BIOLOGY 2017; 17:236. [PMID: 29216819 PMCID: PMC5721698 DOI: 10.1186/s12870-017-1202-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2017] [Accepted: 12/01/2017] [Indexed: 05/23/2023]
Abstract
BACKGROUND Ground-level ozone (O3) is one of the major air pollutants, which cause oxidative injury to plants. The physiological and biochemical mechanisms underlying the responses of plants to O3 stress have been well investigated. However, there are limited reports about the molecular basis of plant responses to O3. In this study, a comparative transcriptomic analysis of Pak Choi (Brassica campestris ssp. chinensis) exposed to different O3 concentrations was conducted for the first time. RESULTS Seedlings of Pak Choi with five leaves were exposed to non-filtered air (NF, 31 ppb) or elevated O3 (E-O3, 252 ppb) for 2 days (8 h per day, from 9:00-17:00). Compared with plants in the NF, a total of 675 differentially expressed genes (DEGs) were identified in plants under E-O3, including 219 DEGs with decreased expressions and 456 DEGs with increased expressions. Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses revealed that O3 stress invoked multiple cellular defense pathways to mitigate the impaired cellular integrity and metabolism, including 'glutathione metabolism', 'phenylpropanoid biosynthesis', 'sulfur metabolism', 'glucosinolate biosynthesis', 'cutin, suberine and wax biosynthesis' and others. Transcription factors potentially involved in this cellular regulation were also found, such as AP2-ERF, WRKY, JAZ, MYB etc. Based on the RNA-Seq data and previous studies, a working model was proposed integrating O3 caused reactive oxygen burst, oxidation-reduction regulation, jasmonic acid and downstream functional genes for the regulation of cellular homeostasis after acute O3 stress. CONCLUSION The present results provide a valuable insight into the molecular responses of Pak Choi to acute O3 stress and the specific DEGs revealed in this study could be used for further functional identification of key allelic genes determining the O3 sensitivity of Pak Choi.
Collapse
Affiliation(s)
- Lu Zhang
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Bin Xu
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, China
| | - Tao Wu
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Mu-xuan Wen
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Lian-xue Fan
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Zhao-zhong Feng
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
| | - Elena Paoletti
- Institute of Sustainable Plant Protection, National Research Council, Florence, Italy
| |
Collapse
|
17
|
Cotrozzi L, Pellegrini E, Guidi L, Landi M, Lorenzini G, Massai R, Remorini D, Tonelli M, Trivellini A, Vernieri P, Nali C. Losing the Warning Signal: Drought Compromises the Cross-Talk of Signaling Molecules in Quercus ilex Exposed to Ozone. FRONTIERS IN PLANT SCIENCE 2017; 8:1020. [PMID: 28674543 PMCID: PMC5475409 DOI: 10.3389/fpls.2017.01020] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Accepted: 05/29/2017] [Indexed: 05/27/2023]
Abstract
Understanding the interactions between drought and acute ozone (O3) stress in terms of signaling molecules and cell death would improve the predictions of plant responses to climate change. The aim was to investigate whether drought stress influences the responses of plants to acute episodes of O3 exposure. In this study, the behavior of 84 Mediterranean evergreen Quercus ilex plants was evaluated in terms of cross-talk responses among signaling molecules. Half of the sample was subjected to drought (20% of the effective daily evapotranspiration, for 15 days) and was later exposed to an acute O3 exposure (200 nL L-1 for 5 h). First, our results indicate that in well-water conditions, O3 induced a signaling pathway specific to O3-sensitive behavior. Second, different trends and consequently different roles of phytohormones and signaling molecules (ethylene, ET; abscisic acid, ABA; salycilic acid, SA and jasmonic acid, JA) were observed in relation to water stress and O3. A spatial and functional correlation between these signaling molecules was observed in modulating O3-induced responses in well-watered plants. In contrast, in drought-stressed plants, these compounds were not involved either in O3-induced signaling mechanisms or in leaf senescence (a response observed in water-stressed plants before the O3-exposure). Third, these differences were ascribable to the fact that in drought conditions, most defense processes induced by O3 were compromised and/or altered. Our results highlight how Q. ilex plants suffering from water deprivation respond differently to an acute O3 episode compared to well-watered plants, and suggest new effect to be considered in plant responses to environmental changes. This poses the serious question as to whether or not multiple high-magnitude O3 events (as predicted) can change these cross-talk responses, thus opening it up possible further investigations.
Collapse
Affiliation(s)
- Lorenzo Cotrozzi
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Elisa Pellegrini
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Lucia Guidi
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Marco Landi
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Giacomo Lorenzini
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Rossano Massai
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Damiano Remorini
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Mariagrazia Tonelli
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Alice Trivellini
- Institute of Life Sciences, Scuola Superiore Sant’AnnaPisa, Italy
| | - Paolo Vernieri
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| | - Cristina Nali
- Department of Agriculture, Food and Environment, University of PisaPisa, Italy
| |
Collapse
|
18
|
|
19
|
Xu E, Vaahtera L, Brosché M. Roles of Defense Hormones in the Regulation of Ozone-Induced Changes in Gene Expression and Cell Death. MOLECULAR PLANT 2015; 8:1776-94. [PMID: 26348016 DOI: 10.1016/j.molp.2015.08.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Revised: 07/07/2015] [Accepted: 08/18/2015] [Indexed: 05/24/2023]
Abstract
Apoplast, the diffusional space between plant cell plasma membranes, is an important medium for signaling within and between the cells. Apoplastic reactive oxygen species (ROS) are crucial signaling molecules in various biological processes. ROS signaling is interconnected with the response to several hormones, including jasmonic acid (JA), salicylic acid (SA) and ethylene. Using ozone (O3) to activate apoplastic ROS signaling, we performed global and targeted analysis of transcriptional changes and cell death assays to dissect the contribution of hormone signaling and various transcription factors (TFs) in the regulation of gene expression and cell death. The contributions of SA, JA, and ethylene were assessed through analysis of single, double, and triple mutants deficient in biosynthesis or signaling for all three hormones. Even in the triple mutant, the global gene expression responses to O3 were mostly similar to the wild-type. Cell death in the JA receptor mutant coi1-16 was suppressed by impairment of the NADPH oxidase RBOHF, suggesting a role for a ROS signal in limiting the spread of cell death. In response to apoplastic ROS, there is not a single signaling pathway that regulates gene expression or cell death. Instead, several pathways regulate the apoplastic ROS response via combinatorial or overlapping mechanisms.
Collapse
Affiliation(s)
- Enjun Xu
- Division of Plant Biology, Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, PO Box 65 Viikinkaari 1, 00014 Helsinki, Finland
| | - Lauri Vaahtera
- Division of Plant Biology, Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, PO Box 65 Viikinkaari 1, 00014 Helsinki, Finland
| | - Mikael Brosché
- Division of Plant Biology, Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, PO Box 65 Viikinkaari 1, 00014 Helsinki, Finland; Institute of Technology, University of Tartu, Nooruse 1, Tartu 50411, Estonia.
| |
Collapse
|
20
|
Xu E, Vaahtera L, Hõrak H, Hincha DK, Heyer AG, Brosché M. Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana. PLANT, CELL & ENVIRONMENT 2015; 38:1418-33. [PMID: 25496229 DOI: 10.1111/pce.12499] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
As multifaceted molecules, reactive oxygen species (ROS) are known to accumulate in response to various stresses. Ozone (O3 ) is an air pollutant with detrimental effect on plants and O3 can also be used as a tool to study the role of ROS in signalling. Genetic variation of O3 sensitivity in different Arabidopsis accessions highlights the complex genetic architecture of plant responses to ROS. To investigate the genetic basis of O3 sensitivity, a recombinant inbred line (RIL) population between two Arabidopsis accessions with distinct O3 sensitivity, C24 (O3 tolerant) and Te (O3 sensitive) was used for quantitative trait loci (QTL) mapping. Through analysis of QTL mapping combined with transcriptome changes in response to O3 , we identified three causal QTLs and several potential candidate genes regulating the response to O3 . Based on gene expression data, water loss and stomatal conductance measurement, we found that a combination of relatively low stomatal conductance and constitutive activation of salicylic acid (SA)-mediated defence signalling were responsible for the O3 tolerance in C24. Application of exogenous SA prior to O3 exposure can mimic the constitutive SA signalling in C24 and could attenuate O3 -induced leaf damage in the sensitive Arabidopsis accessions Te and Cvi-0.
Collapse
Affiliation(s)
- Enjun Xu
- Division of Plant Biology, Department of Biosciences, University of Helsinki, Helsinki, FI-00014, Finland
| | - Lauri Vaahtera
- Division of Plant Biology, Department of Biosciences, University of Helsinki, Helsinki, FI-00014, Finland
| | - Hanna Hõrak
- Institute of Technology, University of Tartu, Tartu, 50411, Estonia
| | - Dirk K Hincha
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam, D-14476, Germany
| | - Arnd G Heyer
- Department of Plant Biotechnology, Institute of Biology, University of Stuttgart, Stuttgart, D-70569, Germany
| | - Mikael Brosché
- Division of Plant Biology, Department of Biosciences, University of Helsinki, Helsinki, FI-00014, Finland
- Institute of Technology, University of Tartu, Tartu, 50411, Estonia
| |
Collapse
|
21
|
Hao J, Wu W, Wang Y, Yang Z, Liu Y, Lv Y, Zhai Y, Yang J, Liang Z, Huang K, Xu W. Arabidopsis thaliana defense response to the ochratoxin A-producing strain (Aspergillus ochraceus 3.4412). PLANT CELL REPORTS 2015; 34:705-19. [PMID: 25666274 DOI: 10.1007/s00299-014-1731-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Revised: 10/29/2014] [Accepted: 12/05/2014] [Indexed: 05/20/2023]
Abstract
OTA-producing strain Aspergillus ochraceus induced necrotic lesions, ROS accumulation and defense responses in Arabidopsis . Primary metabolic and defense-related proteins changed in proteomics. Ascorbate-glutathione cycle and voltage-dependent anion-selective channel proteins fluctuated. Mycotoxigenic fungi, as widespread contaminants by synthesizing mycotoxins in pre-/post-harvest infected plants and even stored commercial cereals, could usually induce plant-fungi defense responses. Notably, ochratoxin A (OTA) is a nephrotoxic, hepatotoxic, teratogenic, immunotoxic and phytotoxic mycotoxin. Herein, defense responses of model system Arabidopsis thaliana detached leaves to infection of Aspergillus ochraceus 3.4412, an OTA high-producing strain, were studied from physiological, proteomic and transcriptional perspectives. During the first 72 h after inoculation (hai), the newly formed hypersensitive responses-like lesions, decreased chlorophyll content, accumulated reactive oxygen species and upregulated defense genes expressions indicated the defense response was induced in the leaves with the possible earlier motivated jasmonic acid/ethylene signaling pathways and the later salicylic acid-related pathway. Moreover, proteomics using two-dimensional gel electrophoresis 72 hai showed 16 spots with significantly changed abundance and 13 spots corresponding to 12 unique proteins were successfully identified by MALDI-TOF/TOF MS/MS. Of these, six proteins were involved in basic metabolism and four in defense-related processes, which included glutathione-S-transferase F7, voltage-dependent anion-selective channel protein 3 (VDAC-3), osmotin-like protein OSM34 and blue copper-binding protein. Verified from proteomic and/or transcriptional perspectives, it is concluded that the primary metabolic pathways were suppressed with the ascorbate-glutathione cycle fluctuated in response to A. ochraceus and the modulation of VDACs suggested the possibility of structural damage and dysfunction of mitochondria in the process. Taken together, these findings exhibited a dynamic overview of the defense responses of A. thaliana to A. ochraceus and provided a better insight into the pathogen-resistance mechanisms in plants.
Collapse
Affiliation(s)
- Junran Hao
- Laboratory of Food Safety and Molecular Biology, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083, People's Republic of China
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
22
|
Vainonen JP, Kangasjärvi J. Plant signalling in acute ozone exposure. PLANT, CELL & ENVIRONMENT 2015; 38:240-52. [PMID: 24417414 DOI: 10.1111/pce.12273] [Citation(s) in RCA: 105] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Revised: 12/17/2013] [Accepted: 12/27/2013] [Indexed: 05/08/2023]
Abstract
Exposure of plants to high ozone concentrations causes lesion formation in sensitive plants. Plant responses to ozone involve fast and massive changes in protein activities, gene expression and metabolism even before any tissue damage can be detected. Degradation of ozone and subsequent accumulation of reactive oxygen species (ROS) in the extracellular space activates several signalling cascades, which are integrated inside the cell into a fine-balanced network of ROS signalling. Reversible protein phosphorylation and degradation plays an important role in the regulation of signalling mechanisms in a complex crosstalk with plant hormones and calcium, an essential second messenger. In this review, we discuss the recent advances in understanding the molecular mechanisms of ozone uptake, perception and signalling pathways activated during the early steps of ozone response, and discuss the use of ozone as a tool to study the function of apoplastic ROS in signalling.
Collapse
Affiliation(s)
- Julia P Vainonen
- Plant Biology Division, Department of Biosciences, University of Helsinki, FI-00014, Helsinki, Finland
| | | |
Collapse
|
23
|
Muthuramalingam M, Zeng X, Iyer NJ, Klein P, Mahalingam R. A GCC-box motif in the promoter of nudix hydrolase 7 (AtNUDT7) gene plays a role in ozone response of Arabidopsis ecotypes. Genomics 2015; 105:31-8. [PMID: 25451743 DOI: 10.1016/j.ygeno.2014.10.015] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 10/15/2014] [Accepted: 10/29/2014] [Indexed: 01/01/2023]
Abstract
Arabidopsis nudix hydrolase 7 (AtNudt7) plays an important role in regulating redox homeostasis during stress/defense signaling and seed germination. The early responsiveness of AtNudt7 provides a useful marker especially during oxidative cell death in plants. Nuclear run-on assays demonstrate that AtNudt7 is transcriptionally regulated. AtNUDT7 promoter-GUS transgenic plants show rapid inducibility in response to ozone and pathogens. A 16-bp insertion containing a GCC-box motif was identified in the promoter of a Ws-2 ecotype and was absent in Col-0. The 16-bp sequence was identified in 5% of the Arabidopsis ecotypes used in the 1001 genome sequencing project. The kinetics of expression of Ethylene Response Factor 1 (ERF1), a GCC-box binding factor is in synchrony with expression of AtNudt7 in response to ozone stress. ERF1 protein binds to the GCC-box motif in the AtNUDT7 promoter. In silico analysis of erf1 mutant and overexpressor lines supports a role for this protein in regulating AtNUDT7 expression.
Collapse
Affiliation(s)
| | - Xin Zeng
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078, USA
| | - Niranjani J Iyer
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078, USA
| | - Peter Klein
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Ramamurthy Mahalingam
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078, USA.
| |
Collapse
|
24
|
Zulfugarov IS, Tovuu A, Eu YJ, Dogsom B, Poudyal RS, Nath K, Hall M, Banerjee M, Yoon UC, Moon YH, An G, Jansson S, Lee CH. Production of superoxide from Photosystem II in a rice (Oryza sativa L.) mutant lacking PsbS. BMC PLANT BIOLOGY 2014; 14:242. [PMID: 25342550 PMCID: PMC4219129 DOI: 10.1186/s12870-014-0242-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Accepted: 09/08/2014] [Indexed: 05/05/2023]
Abstract
BACKGROUND PsbS is a 22-kDa Photosystem (PS) II protein involved in non-photochemical quenching (NPQ) of chlorophyll fluorescence. Rice (Oryza sativa L.) has two PsbS genes, PsbS1 and PsbS2. However, only inactivation of PsbS1, through a knockout (PsbS1-KO) or in RNAi transgenic plants, results in plants deficient in qE, the energy-dependent component of NPQ. RESULTS In studies presented here, under fluctuating high light, growth of young seedlings lacking PsbS is retarded, and PSII in detached leaves of the mutants is more sensitive to photoinhibitory illumination compared with the wild type. Using both histochemical and fluorescent probes, we determined the levels of reactive oxygen species, including singlet oxygen, superoxide, and hydrogen peroxide, in leaves and thylakoids. The PsbS-deficient plants generated more superoxide and hydrogen peroxide in their chloroplasts. PSII complexes isolated from them produced more superoxide compared with the wild type, and PSII-driven superoxide production was higher in the mutants. However, we could not observe such differences either in isolated PSI complexes or through PSI-driven electron transport. Time-course experiments using isolated thylakoids showed that superoxide production was the initial event, and that production of hydrogen peroxide proceeded from that. CONCLUSION These results indicate that at least some of the photoprotection provided by PsbS and qE is mediated by preventing production of superoxide released from PSII under conditions of excess excitation energy.
Collapse
Affiliation(s)
- Ismayil S Zulfugarov
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
- />Department of Biology, North-Eastern Federal University, 58 Belinsky Str, Yakutsk, 677-027 Republic of Sakha (Yakutia) Russian Federation
- />Institute of Botany, Azerbaijan National Academy of Sciences, Patamdar Shosse 40, Baku, AZ 1073 Azerbaijan
| | - Altanzaya Tovuu
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
- />Department of Biology, Mongolian State University of Agriculture, Zaisan, Ulaanbaatar, 17024 Mongolia
| | - Young-Jae Eu
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
| | - Bolormaa Dogsom
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
| | - Roshan Sharma Poudyal
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
| | - Krishna Nath
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
| | - Michael Hall
- />Umeå Plant Science Center, Department of Plant Physiology, Umeå University, Umeå, SE-901 87 Sweden
| | - Mainak Banerjee
- />Department of Chemistry, Pusan National University, Jangjeon-dong, Keumjung-gu, Busan, 609-735 Korea
| | - Ung Chan Yoon
- />Department of Chemistry, Pusan National University, Jangjeon-dong, Keumjung-gu, Busan, 609-735 Korea
| | - Yong-Hwan Moon
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
| | - Gynheung An
- />Crop Biotech Institute, Kyung Hee University, Yongin, 446-701 Korea
| | - Stefan Jansson
- />Umeå Plant Science Center, Department of Plant Physiology, Umeå University, Umeå, SE-901 87 Sweden
| | - Choon-Hwan Lee
- />Department of Integrated Biological Science and Department of Molecular Biology, Pusan National University, Busan, 609-735 Korea
| |
Collapse
|
25
|
Vanzo E, Ghirardo A, Merl-Pham J, Lindermayr C, Heller W, Hauck SM, Durner J, Schnitzler JP. S-nitroso-proteome in poplar leaves in response to acute ozone stress. PLoS One 2014; 9:e106886. [PMID: 25192423 PMCID: PMC4156402 DOI: 10.1371/journal.pone.0106886] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2014] [Accepted: 08/01/2014] [Indexed: 11/26/2022] Open
Abstract
Protein S-nitrosylation, the covalent binding of nitric oxide (NO) to protein cysteine residues, is one of the main mechanisms of NO signaling in plant and animal cells. Using a combination of the biotin switch assay and label-free LC-MS/MS analysis, we revealed the S-nitroso-proteome of the woody model plant Populus x canescens. Under normal conditions, constitutively S-nitrosylated proteins in poplar leaves and calli comprise all aspects of primary and secondary metabolism. Acute ozone fumigation was applied to elicit ROS-mediated changes of the S-nitroso-proteome. This treatment changed the total nitrite and nitrosothiol contents of poplar leaves and affected the homeostasis of 32 S-nitrosylated proteins. Multivariate data analysis revealed that ozone exposure negatively affected the S-nitrosylation status of leaf proteins: 23 proteins were de-nitrosylated and 9 proteins had increased S-nitrosylation content compared to the control. Phenylalanine ammonia-lyase 2 (log2[ozone/control] = −3.6) and caffeic acid O-methyltransferase (−3.4), key enzymes catalyzing important steps in the phenylpropanoid and subsequent lignin biosynthetic pathways, respectively, were de-nitrosylated upon ozone stress. Measuring the in vivo and in vitro phenylalanine ammonia-lyase activity indicated that the increase of the phenylalanine ammonia-lyase activity in response to acute ozone is partly regulated by de-nitrosylation, which might favor a higher metabolic flux through the phenylpropanoid pathway within minutes after ozone exposure.
Collapse
Affiliation(s)
- Elisa Vanzo
- Research Unit Environmental Simulation, Institute for Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany
| | - Andrea Ghirardo
- Research Unit Environmental Simulation, Institute for Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany
| | - Juliane Merl-Pham
- Research Unit Protein Science, Helmholtz Zentrum München, Neuherberg, Germany
| | - Christian Lindermayr
- Institute for Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany
| | - Werner Heller
- Institute for Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany
| | - Stefanie M. Hauck
- Research Unit Protein Science, Helmholtz Zentrum München, Neuherberg, Germany
| | - Jörg Durner
- Institute for Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany
| | - Jörg-Peter Schnitzler
- Research Unit Environmental Simulation, Institute for Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany
- * E-mail:
| |
Collapse
|
26
|
Xu X, Zhang L, Liu B, Ye Y, Wu Y. Characterization and mapping of a spotted leaf mutant in rice (Oryza sativa). Genet Mol Biol 2014; 37:406-13. [PMID: 25071406 PMCID: PMC4094620 DOI: 10.1590/s1415-47572014005000001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Accepted: 04/24/2013] [Indexed: 01/09/2023] Open
Abstract
Spotted leaf mutant belongs to a class of mutants that can produce necrotic lesions spontaneously in plants without any attack by pathogens. These mutants have no beneficial effect on plant productivity but provide a unique opportunity to study programmed cell death in plant defense responses. A novel rice spotted leaf mutant (spl30) was isolated through low-energy heavy ion irradiation. Lesion expression was sensitive to light and humidity. The spl30 mutant caused a decrease in chlorophyll and soluble protein content, with marked accumulation of reactive oxygen species (ROS) around the lesions. In addition, the spl30 mutant significantly enhanced resistance to rice bacterial blight (X. oryzae pv. oryzae) from China (C1–C7). The use of SSR markers showed that the spl30 gene was located between markers XSN2 and XSN4. The genetic distance between the spl30 gene and XSN2 and between spl30 and XSN4 was 1.7 cM and 0.2 cM, respectively. The spl30 gene is a new gene involved in lesion production and may be related to programmed cell death in rice. The ability of this mutant to confer broad resistance to bacterial blight provides a model for studying the interaction between plants and pathogenic bacteria.
Collapse
Affiliation(s)
- Xue Xu
- Key Laboratory of Ion Beam Bioengineering , Institute of Technical Biology and Agriculture Engineering of the Chinese Academy of Sciences , Hefei, Anhui , China . ; Rice Research Institute , Anhui Academy of Agricultural Sciences , Hefei, Anhui , China
| | - Lili Zhang
- Key Laboratory of Ion Beam Bioengineering , Institute of Technical Biology and Agriculture Engineering of the Chinese Academy of Sciences , Hefei, Anhui , China
| | - Binmei Liu
- Key Laboratory of Ion Beam Bioengineering , Institute of Technical Biology and Agriculture Engineering of the Chinese Academy of Sciences , Hefei, Anhui , China
| | - Yafeng Ye
- Key Laboratory of Ion Beam Bioengineering , Institute of Technical Biology and Agriculture Engineering of the Chinese Academy of Sciences , Hefei, Anhui , China
| | - Yuejin Wu
- Key Laboratory of Ion Beam Bioengineering , Institute of Technical Biology and Agriculture Engineering of the Chinese Academy of Sciences , Hefei, Anhui , China
| |
Collapse
|
27
|
Veley KM, Maksaev G, Frick EM, January E, Kloepper SC, Haswell ES. Arabidopsis MSL10 has a regulated cell death signaling activity that is separable from its mechanosensitive ion channel activity. THE PLANT CELL 2014; 26:3115-31. [PMID: 25052715 PMCID: PMC4145136 DOI: 10.1105/tpc.114.128082] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2014] [Revised: 06/19/2014] [Accepted: 06/27/2014] [Indexed: 05/08/2023]
Abstract
Members of the MscS superfamily of mechanosensitive ion channels function as osmotic safety valves, releasing osmolytes under increased membrane tension. MscS homologs exhibit diverse topology and domain structure, and it has been proposed that the more complex members of the family might have novel regulatory mechanisms or molecular functions. Here, we present a study of MscS-Like (MSL)10 from Arabidopsis thaliana that supports these ideas. High-level expression of MSL10-GFP in Arabidopsis induced small stature, hydrogen peroxide accumulation, ectopic cell death, and reactive oxygen species- and cell death-associated gene expression. Phosphomimetic mutations in the MSL10 N-terminal domain prevented these phenotypes. The phosphorylation state of MSL10 also regulated its ability to induce cell death when transiently expressed in Nicotiana benthamiana leaves but did not affect subcellular localization, assembly, or channel behavior. Finally, the N-terminal domain of MSL10 was sufficient to induce cell death in tobacco, independent of phosphorylation state. We conclude that the plant-specific N-terminal domain of MSL10 is capable of inducing cell death, this activity is regulated by phosphorylation, and MSL10 has two separable activities-one as an ion channel and one as an inducer of cell death. These findings further our understanding of the evolution and significance of mechanosensitive ion channels.
Collapse
Affiliation(s)
- Kira M Veley
- Department of Biology, Washington University, St. Louis, Missouri 63130
| | - Grigory Maksaev
- Department of Biology, Washington University, St. Louis, Missouri 63130
| | - Elizabeth M Frick
- Department of Biology, Washington University, St. Louis, Missouri 63130
| | - Emma January
- Department of Biology, Washington University, St. Louis, Missouri 63130
| | - Sarah C Kloepper
- Department of Biology, Washington University, St. Louis, Missouri 63130
| | | |
Collapse
|
28
|
Cho K, Shibato J, Kubo A, Kohno Y, Satoh K, Kikuchi S, Sarkar A, Agrawal GK, Rakwal R. Comparative analysis of seed transcriptomes of ambient ozone-fumigated 2 different rice cultivars. PLANT SIGNALING & BEHAVIOR 2013; 8:e26300. [PMID: 24025514 PMCID: PMC4091349 DOI: 10.4161/psb.26300] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2013] [Accepted: 08/28/2013] [Indexed: 05/26/2023]
Abstract
High ozone (O3) concentrations not only damage plant life but also cause considerable losses in plant productivity. To screen for molecular factors usable as potential biomarkers to identify for O3-sensitive and -tolerant lines and design O3 tolerant crops, our project examines the effects of O3 on rice, using high-throughput omics approaches. In this study, we examined growth and yield parameters of 4 rice cultivars fumigated for a life-time with ambient air (mean O3: 31.4-32.7 ppb) or filtered air (mean O3: 6.6-8.3 ppb) in small open-top chambers (sOTCs) to select O3-sensitive (indica cv Takanari) and O3-tolerant (japonica cv Koshihikari) cultivars for analysis of seed transcriptomes using Agilent 4 × 44K rice oligo DNA chip. Total RNA from dry mature dehusked seeds of Takanari and Koshihikari cultivars was extracted using a modified protocol based on cethyltrimethylammonium bromide extraction buffer and phenol-chloroform-isoamylalcohol treatment, followed by DNA microarray analysis using the established dye-swap method. Direct comparison of Koshihikari and Takanari O3 transcriptomes in seeds of rice plants fumigated with ambient O3 in sOTCs successfully showed that genes encoding proteins involved in jasmonic acid, GABA biosynthesis, cell wall and membrane modification, starch mobilization, and secondary metabolite biosynthesis are differently regulated in sensitive cv Takanari and tolerant cv Koshihikari. MapMan analysis further mapped the molecular factors activated by O3, confirming Takanari is rightly classified as an O3 sensitive genotype.
Collapse
Affiliation(s)
- Kyoungwon Cho
- Environmental Biology Division; National Institute for Environmental Studies (NIES); Tsukuba, Ibaraki Japan
- Seoul Center; Korea Basic Science Institute (KBSI); Seoul, South Korea
| | - Junko Shibato
- Environmental Biology Division; National Institute for Environmental Studies (NIES); Tsukuba, Ibaraki Japan
- Department of Anatomy; Showa University School of Medicine; Shinagawa, Tokyo Japan
- Laboratory of Exercise Biochemistry & Neuroendocrinology; Institute for Health and Sports Science; University of Tsukuba; Tsukuba, Japan
| | - Akihiro Kubo
- Environmental Biology Division; National Institute for Environmental Studies (NIES); Tsukuba, Ibaraki Japan
| | - Yoshihisa Kohno
- Environmental Science Research Laboratory; Central Research Institute of Electric Power Industry (CRIEPI); Chiba, Japan
| | - Kouji Satoh
- Plant Genome Research Unit; Division of Genome and Biodiversity Research; National Institute of Agrobiological Sciences (NIAS); Tsukuba, Ibaraki Japan
| | - Shoshi Kikuchi
- Plant Genome Research Unit; Division of Genome and Biodiversity Research; National Institute of Agrobiological Sciences (NIAS); Tsukuba, Ibaraki Japan
| | - Abhijit Sarkar
- Research Laboratory for Biotechnology and Biochemistry (RLABB); Kathmandu, Nepal
| | - Ganesh Kumar Agrawal
- Research Laboratory for Biotechnology and Biochemistry (RLABB); Kathmandu, Nepal
| | - Randeep Rakwal
- Department of Anatomy; Showa University School of Medicine; Shinagawa, Tokyo Japan
- Research Laboratory for Biotechnology and Biochemistry (RLABB); Kathmandu, Nepal
- Organization for Educational Initiatives; University of Tsukuba, Tsukuba, Ibaraki Japan
| |
Collapse
|
29
|
Ye CM, Chen S, Payton M, Dickman MB, Verchot J. TGBp3 triggers the unfolded protein response and SKP1-dependent programmed cell death. MOLECULAR PLANT PATHOLOGY 2013; 14:241-55. [PMID: 23458484 PMCID: PMC6638746 DOI: 10.1111/mpp.12000] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
The Potato virus X (PVX) triple gene block protein 3 (TGBp3), an 8-kDa membrane binding protein, aids virus movement and induces the unfolded protein response (UPR) during PVX infection. TGBp3 was expressed from the Tobacco mosaic virus (TMV) genome (TMV-p3), and we noted the up-regulation of SKP1 and several endoplasmic reticulum (ER)-resident chaperones, including the ER luminal binding protein (BiP), protein disulphide isomerase (PDI), calreticulin (CRT) and calmodulin (CAM). Local lesions were seen on leaves inoculated with TMV-p3, but not TMV or PVX. Such lesions were the result of TGBp3-elicited programmed cell death (PCD), as shown by an increase in reactive oxygen species, DNA fragmentation and induction of SKP1 expression. UPR-related gene expression occurred within 8 h of TMV-p3 inoculation and declined before the onset of PCD. TGBp3-mediated cell death was suppressed in plants that overexpressed BiP, indicating that UPR induction by TGBp3 is a pro-survival mechanism. Anti-apoptotic genes Bcl-xl, CED-9 and Op-IAP were expressed in transgenic plants and suppressed N gene-mediated resistance to TMV, but failed to alleviate TGBp3-induced PCD. However, TGBp3-mediated cell death was reduced in SKP1-silenced Nicotiana benthamiana plants. The combined data suggest that TGBp3 triggers the UPR and elicits PCD in plants.
Collapse
Affiliation(s)
- Chang-Ming Ye
- Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA
| | | | | | | | | |
Collapse
|
30
|
Ye CM, Chen S, Payton M, Dickman MB, Verchot J. TGBp3 triggers the unfolded protein response and SKP1-dependent programmed cell death. MOLECULAR PLANT PATHOLOGY 2013. [PMID: 23458484 DOI: 10.1111/mpp.12000 [epub ahead of print]] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The Potato virus X (PVX) triple gene block protein 3 (TGBp3), an 8-kDa membrane binding protein, aids virus movement and induces the unfolded protein response (UPR) during PVX infection. TGBp3 was expressed from the Tobacco mosaic virus (TMV) genome (TMV-p3), and we noted the up-regulation of SKP1 and several endoplasmic reticulum (ER)-resident chaperones, including the ER luminal binding protein (BiP), protein disulphide isomerase (PDI), calreticulin (CRT) and calmodulin (CAM). Local lesions were seen on leaves inoculated with TMV-p3, but not TMV or PVX. Such lesions were the result of TGBp3-elicited programmed cell death (PCD), as shown by an increase in reactive oxygen species, DNA fragmentation and induction of SKP1 expression. UPR-related gene expression occurred within 8 h of TMV-p3 inoculation and declined before the onset of PCD. TGBp3-mediated cell death was suppressed in plants that overexpressed BiP, indicating that UPR induction by TGBp3 is a pro-survival mechanism. Anti-apoptotic genes Bcl-xl, CED-9 and Op-IAP were expressed in transgenic plants and suppressed N gene-mediated resistance to TMV, but failed to alleviate TGBp3-induced PCD. However, TGBp3-mediated cell death was reduced in SKP1-silenced Nicotiana benthamiana plants. The combined data suggest that TGBp3 triggers the UPR and elicits PCD in plants.
Collapse
Affiliation(s)
- Chang-Ming Ye
- Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA
| | | | | | | | | |
Collapse
|
31
|
Iyer NJ, Tang Y, Mahalingam R. Physiological, biochemical and molecular responses to a combination of drought and ozone in Medicago truncatula. PLANT, CELL & ENVIRONMENT 2013; 36:706-20. [PMID: 22946485 DOI: 10.1111/pce.12008] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Drought and tropospheric ozone are escalating climate change problems that can co-occur. In this study, we observed Medicago truncatula cultivar Jemalong that is sensitive to ozone and drought stress when applied singly, showed tolerance when subjected to a combined application of these stresses. Lowered stomatal conductance may be a vital tolerance mechanism to overcome combined ozone and drought. Sustained increases in both reduced ascorbate and glutathione in response to combined stress may play a role in lowering reactive oxygen species and nitric oxide toxicity. Transcriptome analysis indicated that genes associated with glucan metabolism, responses to temperature and light signalling may play a role in dampening ozone responses due to drought-induced stomatal closure during combined occurrence of these two stresses. Gene ontologies for jasmonic acid signalling and innate immunity were enriched among the 300 differentially expressed genes unique to combined stress. Differential expression of transcription factors associated with redox, defence signalling, jasmonate responses and chromatin modifications may be important for evoking novel gene networks during combined occurrence of drought and ozone. The alterations in redox milieu and distinct transcriptome changes in response to combined stress could aid in tweaking the metabolome and proteome to annul the detrimental effects of ozone and drought in Jemalong.
Collapse
Affiliation(s)
- Niranjani J Iyer
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, Oklahoma, USA
| | | | | |
Collapse
|
32
|
Hideg E, Jansen MAK, Strid A. UV-B exposure, ROS, and stress: inseparable companions or loosely linked associates? TRENDS IN PLANT SCIENCE 2013; 18:107-15. [PMID: 23084465 DOI: 10.1016/j.tplants.2012.09.003] [Citation(s) in RCA: 338] [Impact Index Per Article: 30.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 09/12/2012] [Accepted: 09/14/2012] [Indexed: 05/18/2023]
Abstract
Ultraviolet-B (UV-B) radiation has long been perceived as a stressor. However, a conceptual U-turn has taken place, and UV-B damage is now considered rare. We question whether UV-stress and UV-B-induced reactive oxygen species (ROS) are still relevant concepts, and if ROS-mediated signaling contributes to UV-B acclimation. Measurements of antioxidants and of antioxidant genes show that both low and high UV-B doses alter ROS metabolism. Yet, there is no evidence that ROS control gene expression under low UV-B. Instead, expression of antioxidant genes is linked to the UV RESISTANCE LOCUS 8 pathway. We hypothesize that low UV-B doses cause 'eustress' (good stress) and that stimuli-specific signaling pathways pre-dispose plants to a state of low alert that includes activation of antioxidant defenses.
Collapse
Affiliation(s)
- Eva Hideg
- Institute of Biology, University of Pécs, Ifjuság u. 6. H-7624 Pécs, Hungary
| | | | | |
Collapse
|
33
|
Johansson Jänkänpää H, Frenkel M, Zulfugarov I, Reichelt M, Krieger-Liszkay A, Mishra Y, Gershenzon J, Moen J, Lee CH, Jansson S. Non-photochemical quenching capacity in Arabidopsis thaliana affects herbivore behaviour. PLoS One 2013; 8:e53232. [PMID: 23301046 PMCID: PMC3534670 DOI: 10.1371/journal.pone.0053232] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2012] [Accepted: 11/29/2012] [Indexed: 01/05/2023] Open
Abstract
Under natural conditions, plants have to cope with numerous stresses, including light-stress and herbivory. This raises intriguing questions regarding possible trade-offs between stress defences and growth. As part of a program designed to address these questions we have compared herbivory defences and damage in wild type Arabidopsis thaliana and two “photoprotection genotypes”, npq4 and oePsbS, which respectively lack and overexpress PsbS (a protein that plays a key role in qE-type non-photochemical quenching). In dual-choice feeding experiments both a specialist (Plutella xylostella) and a generalist (Spodoptera littoralis) insect herbivore preferred plants that expressed PsbS most strongly. In contrast, although both herbivores survived equally well on each of the genotypes, for oviposition female P. xylostella adults preferred plants that expressed PsbS least strongly. However, there were no significant differences between the genotypes in levels of the 10 most prominent glucosinolates; key substances in the Arabidopsis anti-herbivore chemical defence arsenal. After transfer from a growth chamber to the field we detected significant differences in the genotypes’ metabolomic profiles at all tested time points, using GC-MS, but no consistent “metabolic signature” for the lack of PsbS. These findings suggest that the observed differences in herbivore preferences were due to differences in the primary metabolism of the plants rather than their contents of typical “defence compounds”. A potentially significant factor is that superoxide accumulated most rapidly and to the highest levels under high light conditions in npq4 mutants. This could trigger changes in planta that are sensed by herbivores either directly or indirectly, following its dismutation to H2O2.
Collapse
Affiliation(s)
| | - Martin Frenkel
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
| | - Ismayil Zulfugarov
- Department of Molecular Biology, Pusan National University, Busan, Republic of Korea
- Institute of Botany, Azerbaijan National Academy of Sciences, Baku, Azerbaijan
| | - Michael Reichelt
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Anja Krieger-Liszkay
- CEA, Institut de Biologie et Technologies de Saclay, Service de Bioénergétique Biologie Structurale et Mécanisme, Gif-sur-Yvette, France
| | - Yogesh Mishra
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Jon Moen
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
| | - Choon-Hwan Lee
- Department of Molecular Biology, Pusan National University, Busan, Republic of Korea
| | - Stefan Jansson
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden
- * E-mail: Stefan,
| |
Collapse
|
34
|
Booker FL, Burkey KO, Jones AM. Re-evaluating the role of ascorbic acid and phenolic glycosides in ozone scavenging in the leaf apoplast of Arabidopsis thaliana L. PLANT, CELL & ENVIRONMENT 2012; 35:1456-66. [PMID: 22380512 PMCID: PMC4864724 DOI: 10.1111/j.1365-3040.2012.02502.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Phenolic glycosides are effective reactive oxygen scavengers and peroxidase substrates, suggesting that compounds in addition to ascorbate may have functional importance in defence responses against ozone (O(3)), especially in the leaf apoplast. The apoplastic concentrations of ascorbic acid (AA) and phenolic glycosides in Arabidopsis thaliana L. Col-0 wild-type plants were determined following exposure to a range of O(3) concentrations (5, 125 or 175 nL L(-1)) in controlled environment chambers. AA in leaf apoplast extracts was almost entirely oxidized in all treatments, suggesting that O(3) scavenging by direct reactions with reduced AA was very limited. In regard to phenolics, O(3) stimulated transcription of numerous phenylpropanoid pathway genes and increased the apoplastic concentration of sinapoyl malate. However, modelling of O(3) scavenging in the apoplast indicated that sinapoyl malate concentrations were too low to be effective protectants. Furthermore, null mutants for sinapoyl esters (fah1-7), kaempferol glycosides (tt4-1) and the double mutant (tt4-1/fah1-7) were equally sensitive to chronic O(3) as Ler-0 wild-type plants. These results indicate that current understanding of O(3) defence schemes deserves reassessment as mechanisms other than direct scavenging of O(3) by extracellular AA and antioxidant activity of some phenolics may predominate in some plant species.
Collapse
Affiliation(s)
- Fitzgerald L Booker
- U.S. Department of Agriculture, Plant Science Research Unit, 3127 Ligon Street, Raleigh, North Carolina 27607, USA.
| | | | | |
Collapse
|
35
|
Pasqualini S, Reale L, Calderini O, Pagiotti R, Ederli L. Involvement of protein kinases and calcium in the NO-signalling cascade for defence-gene induction in ozonated tobacco plants. JOURNAL OF EXPERIMENTAL BOTANY 2012; 63:4485-96. [PMID: 22685306 DOI: 10.1093/jxb/ers133] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
This study analyses the signalling pathways triggered by nitric oxide (NO) in response to ozone (O(3)) fumigation of tobacco plants, with particular attention to protein kinase cascades and free cytosolic Ca(2+) in defence-gene activation. NO was visualized with the NO probe DAF-FM. Using a pharmacological approach, the effects of different inhibitors on the expression profiles of NO-dependent defence genes were monitored using RT-PCR. The assay of the kinase activity of the immunoprecipitates complexes shows that O(3) stimulates a 48 kDa salicylic acid (SA)-induced protein kinase (SIPK) in an NO-dependent manner. The O(3)-induced alternative oxidase 1a (AOX1a) and phenylalanine ammonia lyase a (PALa) genes are modulated by phosphorylation by protein kinases, and SIPK might have a role in this up-regulation. By contrast, protein dephosphorylation mediates pathogenesis-related protein 1a (PR1a) expression in O(3)-treated tobacco plants. Ca(2+) is essential, but not sufficient, to promote NO accumulation in ozonated tobacco plants. Intracellular Ca(2+) transients are also essential for PALa up-regulation and cGMP-induced PR1a expression. Partial dependence on intracellular Ca(2+) suggests two different pathways of SA accumulation and PR1a induction. A model summarizing the signalling networks involving NO, SA, and the cellular messengers in this O(3)-induced defence gene activation is proposed.
Collapse
Affiliation(s)
- S Pasqualini
- Department of Applied Biology, University of Perugia, Borgo XX Giugno, 74, I-06121 Perugia, Italy.
| | | | | | | | | |
Collapse
|
36
|
Booker F, Burkey K, Morgan P, Fiscus E, Jones A. Minimal influence of G-protein null mutations on ozone-induced changes in gene expression, foliar injury, gas exchange and peroxidase activity in Arabidopsis thaliana L. PLANT, CELL & ENVIRONMENT 2012; 35:668-81. [PMID: 21988569 PMCID: PMC4905725 DOI: 10.1111/j.1365-3040.2011.02443.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Ozone (O(3)) uptake by plants leads to an increase in reactive oxygen species (ROS) in the intercellular space of leaves and induces signalling processes reported to involve the membrane-bound heterotrimeric G-protein complex. Therefore, potential G-protein-mediated response mechanisms to O(3) were compared between Arabidopsis thaliana L. lines with null mutations in the α- and β-subunits (gpa1-4, agb1-2 and gpa1-4/agb1-2) and Col-0 wild-type plants. Plants were treated with a range of O(3) concentrations (5, 125, 175 and 300 nL L(-1)) for 1 and 2 d in controlled environment chambers. Transcript levels of GPA1, AGB1 and RGS1 transiently increased in Col-0 exposed to 125 nL L(-1) O(3) compared with the 5 nL L(-1) control treatment. However, silencing of α and β G-protein genes resulted in little alteration of many processes associated with O(3) injury, including the induction of ROS-signalling genes, increased leaf tissue ion leakage, decreased net photosynthesis and stomatal conductance, and increased peroxidase activity, especially in the leaf apoplast. These results indicated that many responses to O(3) stress at physiological levels were not detectably influenced by α and β G-proteins.
Collapse
Affiliation(s)
- Fitzgerald Booker
- US Department of Agriculture, Plant Science Research Unit, Raleigh, NC 27607, USA.
| | | | | | | | | |
Collapse
|
37
|
Iyer NJ, Jia X, Sunkar R, Tang G, Mahalingam R. microRNAs responsive to ozone-induced oxidative stress in Arabidopsis thaliana. PLANT SIGNALING & BEHAVIOR 2012; 7:484-91. [PMID: 22499183 PMCID: PMC3419038 DOI: 10.4161/psb.19337] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Ozone is a model abiotic elicitor of reactive oxygen species (ROS). ROS are important oxidative signaling molecules coordinating plant development and responses to biotic and abiotic stresses. Recently, microRNAs have been described as important players in regulating stress responses in plants. In this research we examined the miRNAs that are differentially expressed early in response to ozone in the Arabidopsis thaliana ecotype Col-0 that is tolerant to this oxidant. We used a plant miRNA array to identify 22 miRNA families that are differentially expressed within one hour of ozone fumigation. Majority of these miRNAs were also reported in response to UV-B stress. Analysis of the miRNA target genes showed a strong negative correlation to the miRNA expression. In silico promoter analysis of miRNA genes identified several stress responsive cis-elements that were enriched in the promoters of ozone responsive genes. Majority of the target genes of ozone responsive miRNAs were associated with developmental processes. Based on these results we suggest that post-transcriptional gene regulation via miRNAs may aid in resource allocation by downregulating developmental processes to cater to the oxidative stress demands on plants.
Collapse
Affiliation(s)
- Niranjani J. Iyer
- Department of Biochemistry and Molecular Biology; Oklahoma State University; Stillwater, OK USA
- Current address: Monsanto; Chesterfield, MO USA
| | - Xiaoyun Jia
- Gene Suppression Laboratory; Department of Plant and Soil Sciences and Kentucky Tobacco Research and Development Center; University of Kentucky; Lexington, KY USA
| | - Ramanjulu Sunkar
- Department of Biochemistry and Molecular Biology; Oklahoma State University; Stillwater, OK USA
| | - Guiliang Tang
- Gene Suppression Laboratory; Department of Plant and Soil Sciences and Kentucky Tobacco Research and Development Center; University of Kentucky; Lexington, KY USA
| | - Ramamurthy Mahalingam
- Department of Biochemistry and Molecular Biology; Oklahoma State University; Stillwater, OK USA
| |
Collapse
|
38
|
Zhou L, Franck C, Yang K, Pilot G, Heath LS, Grene R. Mining for meaning: visualization approaches to deciphering Arabidopsis stress responses in roots and shoots. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2012; 16:208-28. [PMID: 22416883 DOI: 10.1089/omi.2011.0111] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Massive amounts of transcriptomic data documenting plant responses to changes in environment continue to accumulate in online databases. Unfortunately, many of these data sets have not been analyzed in full detail, especially those that involve time course experiments. To gain more knowledge of the successive gene expression events that occur when stress is initiated in one organ and then relayed to another, we have chosen stress response data for Arabidopsis shoots and roots from the detailed time course study of Killian et al. as a promising source to mine. Using refined statistical analysis, modified vector analysis, and a GO enrichment algorithm, more information was revealed concerning the effects of salt and UVB on gene expression events in shoots and roots over a 24-h time period. GeneMania, with in-house modifications, was used to further analyze abscisic acid (ABA) and jasmonic acid-related (JA) gene expression events in salt-stressed roots and shoots. JA effects appeared to be quite distinct in roots when compared to shoots, especially with respect to the expression of members of the negative regulatory JAZ gene family. In contrast, ABA-related gene expression events were more similar in the two organs. Instances of crosstalk between hormones were observed, as were early responses of regulatory genes involved in both auxin and cytokinin signaling. In the case of each hormone class examined, hormone biosynthesis genes were coexpressed with the genes encoding negative regulators of the corresponding signaling pathway. Hypotheses to explain this finding and future experiments to further explore these nonlinear phenomena are proposed.
Collapse
Affiliation(s)
- Lecong Zhou
- Department of Plant Pathology, Physiology and Weed Science, Virginia Polytechnic Institute & State University, Blacksburg, 24061, USA
| | | | | | | | | | | |
Collapse
|
39
|
Puckette M, Iyer NJ, Tang Y, Dai XB, Zhao P, Mahalingam R. Differential mRNA translation in Medicago truncatula accessions with contrasting responses to ozone-induced oxidative stress. MOLECULAR PLANT 2012; 5:187-204. [PMID: 21873294 DOI: 10.1093/mp/ssr069] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Acute ozone is a model abiotic elicitor of oxidative stress and a useful tool for understanding biochemical and molecular events during oxidative signaling. Two Medicago truncatula accessions with contrasting responses to ozone were used to examine translational regulation during ozone stress. In ozone-resistant JE154, significant reduction in ribosome loading was observed within one hour of ozone treatment, suggesting energy homeostasis as a vital factor for oxidative stress management. Polysomal RNA-based expression profiling with Affymetrix arrays revealed extensive changes in the translatomes of both accessions. Messenger RNAs with low GC content in their 5' and 3'-UTRs were preferentially associated with polysomes during oxidative stress. Genebins analysis revealed extensive changes in various gene ontologies in both accessions. Extensive changes in nicotinate and nicotinamide metabolism genes were corroborated with increased levels of NAD(+) and NADH in JE154. The significantly lower NAD(+):NADH redox status in JE154, in conjunction with higher ATP amounts, provided a cellular milieu conducive for overcoming oxidative stress. Low levels of ATP, NADH, and suppression of antioxidant defense responses, abet build-up of ozone-derived ROS and ultimately lead to oxidative cell death in Jemalong.
Collapse
Affiliation(s)
- Michael Puckette
- 246 Noble Research Center, Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078, USA
| | | | | | | | | | | |
Collapse
|
40
|
Corpas FJ, Leterrier M, Valderrama R, Airaki M, Chaki M, Palma JM, Barroso JB. Nitric oxide imbalance provokes a nitrosative response in plants under abiotic stress. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2011; 181:604-11. [PMID: 21893257 DOI: 10.1016/j.plantsci.2011.04.005] [Citation(s) in RCA: 139] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Revised: 03/11/2011] [Accepted: 04/12/2011] [Indexed: 05/06/2023]
Abstract
Nitric oxide (NO), a free radical generated in plant cells, belongs to a family of related molecules designated as reactive nitrogen species (RNS). When an imbalance of RNS takes place for any adverse environmental circumstances, some of these molecules can cause direct or indirect damage at the cellular or molecular level, promoting a phenomenon of nitrosative stress. Thus, this review will emphasize the recent progress in understanding the function of NO and its production under adverse environmental conditions.
Collapse
Affiliation(s)
- Francisco J Corpas
- Departamento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín, CSIC, Granada, Spain.
| | | | | | | | | | | | | |
Collapse
|
41
|
Banaś AK, Łabuz J, Sztatelman O, Gabryś H, Fiedor L. Expression of enzymes involved in chlorophyll catabolism in Arabidopsis is light controlled. PLANT PHYSIOLOGY 2011; 157:1497-504. [PMID: 21896889 PMCID: PMC3252159 DOI: 10.1104/pp.111.185504] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2011] [Accepted: 09/01/2011] [Indexed: 05/18/2023]
Abstract
We found that the levels of mRNA of two enzymes involved in chlorophyll catabolism in Arabidopsis (Arabidopsis thaliana), products of two chlorophyllase genes, AtCLH1 and AtCLH2, dramatically increase (by almost 100- and 10-fold, respectively) upon illumination with white light. The measurements of photosystem II quantum efficiency in 3-(3,4-dichlorophenyl)-1,1-dimethylurea-inhibited leaves show that their expression is not related to photosynthesis but mediated by photoreceptors. To identify the photoreceptors involved, we used various light treatments and Arabidopsis photoreceptor mutants (cry1, cry2, cry1cry2, phot1, phot2, phot1phot2, phyA phyB, phyAphyB). In wild-type Columbia, the amount of transcripts of both genes increase after white-light irradiation but their expression profile and the extent of regulation differ considerably. Blue and red light is active in the case of AtCLH1, whereas only blue light raises the AtCLH2 mRNA level. The fundamental difference is the extent of up-regulation, higher by one order of magnitude in AtCLH1. Both blue and red light is active in the induction of AtCLH1 expression in all mutants, pointing to a complex control network and redundancy between photoreceptors. The blue-specific up-regulation of the AtCLH2 transcript is mediated by cryptochromes and modulated by phototropin1 and phytochromes. Individually darkened leaves were used to test the effects of senescence on the expression of AtCLH1 and AtCLH2. The expression profile of AtCLH1 remains similar to that found in nonsenescing leaves up to 5 d after darkening. In contrast, the light induction of AtCLH2 mRNA declines during dark treatment. These results demonstrate that the expression of enzymes involved in chlorophyll catabolism is light controlled.
Collapse
Affiliation(s)
| | | | | | | | - Leszek Fiedor
- Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, 30–387 Krakow, Poland
| |
Collapse
|
42
|
Cellini A, Corpas FJ, Barroso JB, Masia A. Nitric oxide content is associated with tolerance to bicarbonate-induced chlorosis in micropropagated Prunus explants. JOURNAL OF PLANT PHYSIOLOGY 2011; 168:1543-1549. [PMID: 21507506 DOI: 10.1016/j.jplph.2011.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2010] [Revised: 02/01/2011] [Accepted: 02/02/2011] [Indexed: 05/30/2023]
Abstract
Iron (Fe) chlorosis is a common nutritional deficiency in fruit trees grown in calcareous soils. Grafting on tolerant rootstocks is the most efficient practice to cope with it. In the present work, three Prunus hybrid genotypes, commonly used as peach rootstocks, and one peach cultivar were cultivated with bicarbonate in the growth medium. Parameters describing oxidative stress and the metabolism of reactive nitrogen species were studied. Lower contents of nitric oxide and a decreased nitrosoglutathione reductase activity were found in the most sensitive genotypes, characterized by higher oxidative stress and reduced antioxidant defense. In the peach cultivar, which behaved as a tolerant genotype, a specifically nitrated polypeptide was found.
Collapse
Affiliation(s)
- Antonio Cellini
- Dipartimento di Colture Arboree, Università degli Studi di Bologna, Viale Fanin 46, 40127 Bologna, Italy
| | | | | | | |
Collapse
|
43
|
Ye C, Dickman MB, Whitham SA, Payton M, Verchot J. The unfolded protein response is triggered by a plant viral movement protein. PLANT PHYSIOLOGY 2011; 156:741-55. [PMID: 21474436 PMCID: PMC3177272 DOI: 10.1104/pp.111.174110] [Citation(s) in RCA: 122] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2011] [Accepted: 04/04/2011] [Indexed: 05/17/2023]
Abstract
Infection with Potato virus X (PVX) in Nicotiana benthamiana plants leads to increased transcript levels of several stress-related host genes, including basic-region leucine zipper 60 (bZIP60), SKP1, ER luminal binding protein (BiP), protein disulfide isomerase (PDI), calreticulin (CRT), and calmodulin (CAM). bZIP60 is a key transcription factor that responds to endoplasmic reticulum (ER) stress and induces the expression of ER-resident chaperones (BiP, PDI, CRT, and CAM). SKP1 is a component of SCF (for SKP1-Cullin-F box protein) ubiquitin ligase complexes that target proteins for proteasomal degradation. Expression of PVX TGBp3 from a heterologous vector induces the same set of genes in N. benthamiana and Arabidopsis (Arabidopsis thaliana) leaves. Virus-induced gene silencing was employed to knock down the expression of bZIP60 and SKP1, and the number of infection foci on inoculated leaves was reduced and systemic PVX accumulation was altered. Silencing bZIP60 led to the suppression of BiP and SKP1 transcript levels, suggesting that bZIP60 might be an upstream signal transducer. Overexpression of TGBp3 led to localized necrosis, but coexpression of TGBp3 with BiP abrogated necrosis, demonstrating that the unfolded protein response alleviates ER stress-related cell death. Steady-state levels of PVX replicase and TGBp2 (which reside in the ER) proteins were unaltered by the presence of TGBp3, suggesting that TGBp3 does not contribute to their turnover. Taken together, PVX TGBp3-induced ER stress leads to up-regulation of bZIP60 and unfolded protein response-related gene expression, which may be important to regulate cellular cytotoxicity that could otherwise lead to cell death if viral proteins reach high levels in the ER.
Collapse
Affiliation(s)
| | | | | | | | - Jeanmarie Verchot
- Department of Entomology and Plant Pathology (C.Y., J.V.) and Department of Statistics (M.P.), Oklahoma State University, Stillwater, Oklahoma 74078; Institute for Plant Genomics and Biotechnology, Department of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas 77843 (M.B.D.); Department of Plant Pathology, Iowa State University, Ames, Iowa 50011 (S.A.W.)
| |
Collapse
|
44
|
Cho K, Tiwari S, Agrawal SB, Torres NL, Agrawal M, Sarkar A, Shibato J, Agrawal GK, Kubo A, Rakwal R. Tropospheric ozone and plants: absorption, responses, and consequences. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2011; 212:61-111. [PMID: 21432055 DOI: 10.1007/978-1-4419-8453-1_3] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Ozone is now considered to be the second most important gaseous pollutant in our environment. The phytotoxic potential of O₃ was first observed on grape foliage by B.L. Richards and coworkers in 1958 (Richards et al. 1958). To date, unsustainable resource utilization has turned this secondary pollutant into a major component of global climate change and a prime threat to agricultural production. The projected levels to which O₃ will increase are critically alarming and have become a major issue of concern for agriculturalists, biologists, environmentalists and others plants are soft targets for O₃. Ozone enters plants through stomata, where it disolves in the apoplastic fluid. O₃ has several potential effects on plants: direct reaction with cell membranes; conversion into ROS and H₂O₂ (which alters cellular function by causing cell death); induction of premature senescence; and induction of and up- or down-regulation of responsive components such as genes , proteins and metabolites. In this review we attempt to present an overview picture of plant O₃ interactions. We summarize the vast number of available reports on plant responses to O₃ at the morphological, physiological, cellular, biochemical levels, and address effects on crop yield, and on genes, proteins and metabolites. it is now clear that the machinery of photosynthesis, thereby decreasing the economic yield of most plants and inducing a common morphological symptom, called the "foliar injury". The "foliar injury" symptoms can be authentically utilized for biomonitoring of O₃ under natural conditions. Elevated O₃ stress has been convincingly demonstrated to trigger an antioxidative defense system in plants. The past several years have seen the development and application of high-throughput omics technologies (transcriptomics, proteomics, and metabolomics) that are capable of identifying and prolifiling the O₃-responsive components in model and nonmodel plants. Such studies have been carried out ans have generated an inventory of O₃-Responsive components--a great resource to the scientific community. Recently, it has been shown that certain organic chemicals ans elevated CO₂ levels are effective in ameliorating O₃-generated stress. Both targeted and highthroughput approaches have advanced our knowledge concerning what O₃-triggerred signaling and metabolic pathways exist in plants. Moreover, recently generated information, and several biomarkers for O₃, may, in the future, be exploited to better screen and develop O₃-tolerant plants.
Collapse
Affiliation(s)
- Kyoungwon Cho
- Research Laboratory for Biotechnology and Biochemistry, Kathmandu, Nepal
| | | | | | | | | | | | | | | | | | | |
Collapse
|
45
|
Street NR, James TM, James T, Mikael B, Jaakko K, Mark B, Taylor G. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2011; 159:45-54. [PMID: 20980086 DOI: 10.1016/j.envpol.2010.09.027] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2010] [Revised: 09/13/2010] [Accepted: 09/19/2010] [Indexed: 05/08/2023]
Abstract
Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Collapse
Affiliation(s)
- Nathaniel Robert Street
- School of Biological Sciences, University of Southampton, Bassett Crescent East, SO16 7PX, UK
| | - Tallis Matthew James
- School of Biological Sciences, University of Southampton, Bassett Crescent East, SO16 7PX, UK
| | - Tucker James
- School of Biological Sciences, University of Southampton, Bassett Crescent East, SO16 7PX, UK
| | - Brosché Mikael
- Plant Biology, Department of Biological and Environmental Sciences, University of Helsinki, FIN-00014 Helsinki, Finland
| | - Kangasjärvi Jaakko
- Plant Biology, Department of Biological and Environmental Sciences, University of Helsinki, FIN-00014 Helsinki, Finland
| | - Broadmeadow Mark
- Environmental Research Branch, Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK
| | - Gail Taylor
- School of Biological Sciences, University of Southampton, Bassett Crescent East, SO16 7PX, UK.
| |
Collapse
|
46
|
Peal L, Jambunathan N, Mahalingam R. Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. Mol Cells 2011; 31:55-64. [PMID: 21120628 PMCID: PMC3906871 DOI: 10.1007/s10059-011-0001-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2010] [Revised: 09/17/2010] [Accepted: 09/29/2010] [Indexed: 11/27/2022] Open
Abstract
The superfamily of RNA binding proteins (RBPs) is vastly expanded in plants compared to other eukaryotes. A subfamily of RBPs that contain three RNA recognition motifs (RRMs) from the Arabidopsis (24), rice (19) and poplar (37) genomes was analyzed in this study. Phylogenetic analysis with full-length protein sequences of 80 RBPs identified nine clades. The largest clade, comprising 23 members, showed high homology to human RBPs involved in oxidative signaling. Digital northern analysis revealed that Arabidopsis RBPs are transcriptionally responsive to biotic, abiotic and hormonal treatments. Northern blot analysis of eight Arabidopsis RBPs belonging to the tobacco RBP45/47 family showed that these genes respond to ozone stress. AtRBP45b, which shows closest homology to the yeast oxidative stress regulatory protein, CSX1, was expressed in multiple tissues. Two novel splice variant forms of AtRBP45b were identified by 3'RACE analysis. Based on RT-PCR, splice variant AtRBP45b-SV1 was observed only in response to mechanical wounding caused by pathogen or chemical infiltrations and was not detectable in response to salt or temperature stress. Electrophoretic mobility shift assay demonstrated that recombinant full-length and splice variant forms of AtRBP45b bound synthetic RNA. Identifying in vivo RNA targets of AtRBP45b will aid in determining the precise functional role of these proteins during oxidative signaling.
Collapse
Affiliation(s)
- Lila Peal
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, USA
| | - Niranjani Jambunathan
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, USA
- Present Address: Monsanto, Saint Louis, USA
| | - Ramamurthy Mahalingam
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, USA
| |
Collapse
|
47
|
González A, Trebotich J, Vergara E, Medina C, Morales B, Moenne A. Copper-induced calcium release from ER involves the activation of ryanodine-sensitive and IP(3)-sensitive channels in Ulva compressa. PLANT SIGNALING & BEHAVIOR 2010; 5:1647-9. [PMID: 21139437 PMCID: PMC3115124 DOI: 10.4161/psb.5.12.13977] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The marine alga Ulva compressa (Chlorophyta) showed a triphasic release of intracellular calcium with maximal levels at 2, 3 and 12 h and a biphasic accumulation of intracellular hydrogen peroxide with peaks at 3 and 12 h when cultivated with copper excess. Intracellular hydrogen peroxide originated exclusively in organelles. In this work, we analyzed the intracellular origin of calcium release and the type of calcium channels activated in response to copper excess. U. compressa was treated with thapsigargin, an inhibitor of endoplasmic reticulum (ER) calcium ATPase, ryanodine, an inhibitor of ryanodine-sensitive channels, and xestospongin C, an inhibitor of inositol 1, 4, 5-triphosphate (IP(3))-sensitive channels. Thapsigargin induced the depletion of calcium stored in ER at 75 min and completely inhibited calcium release at 2, 3 and 12 h of copper exposure indicating that calcium release originated in ER. In addition, ryanodine and xestospogin C inhibited calcium release at 2 and 3 h of copper exposure whereas the peak at 12 h was only inhibited by ryanodine. Thus, copper induced the activation of ryanodine-sensitive and IP(3)-sensitive calcium channels in ER of U. compressa.
Collapse
Affiliation(s)
- Alberto González
- Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile
| | | | | | | | | | | |
Collapse
|
48
|
Han GW, Bakolitsa C, Miller MD, Kumar A, Carlton D, Najmanovich RJ, Abdubek P, Astakhova T, Axelrod HL, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Krishna SS, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction. Acta Crystallogr Sect F Struct Biol Cryst Commun 2010; 66:1218-25. [PMID: 20944214 PMCID: PMC2954208 DOI: 10.1107/s1744309109050416] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2009] [Accepted: 11/23/2009] [Indexed: 11/14/2022]
Abstract
The crystal structures of SPO0140 and Sbal_2486 were determined using the semiautomated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.
Collapse
Affiliation(s)
- Gye Won Han
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Constantina Bakolitsa
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
| | - Mitchell D. Miller
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Abhinav Kumar
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Dennis Carlton
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Rafael J. Najmanovich
- Département de Biochimie, Faculté de Médecine, Université de Sherbrooke, Sherbrooke (Quebec), Canada
| | - Polat Abdubek
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Tamara Astakhova
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - Herbert L. Axelrod
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Connie Chen
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Hsiu-Ju Chiu
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Thomas Clayton
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Debanu Das
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Marc C. Deller
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Lian Duan
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - Dustin Ernst
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Julie Feuerhelm
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Joanna C. Grant
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Anna Grzechnik
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Lukasz Jaroszewski
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - Kevin K. Jin
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Hope A. Johnson
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Heath E. Klock
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Mark W. Knuth
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Piotr Kozbial
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
| | - S. Sri Krishna
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - David Marciano
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Daniel McMullan
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Andrew T. Morse
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - Edward Nigoghossian
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Linda Okach
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Ron Reyes
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Christopher L. Rife
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Natasha Sefcovic
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
| | - Henry J. Tien
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Christine B. Trame
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Henry van den Bedem
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Dana Weekes
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
| | - Qingping Xu
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Keith O. Hodgson
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Photon Science, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - John Wooley
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - Marc-André Elsliger
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| | - Ashley M. Deacon
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Adam Godzik
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Program on Bioinformatics and Systems Biology, Burnham Institute for Medical Research, La Jolla, CA, USA
- Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
| | - Scott A. Lesley
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
- Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA
| | - Ian A. Wilson
- Joint Center for Structural Genomics, http://www.jcsg.org, USA
- Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA, USA
| |
Collapse
|
49
|
Gonzalez A, Vera J, Castro J, Dennett G, Mellado M, Morales B, Correa JA, Moenne A. Co-occurring increases of calcium and organellar reactive oxygen species determine differential activation of antioxidant and defense enzymes in Ulva compressa (Chlorophyta) exposed to copper excess. PLANT, CELL & ENVIRONMENT 2010; 33:1627-40. [PMID: 20444222 DOI: 10.1111/j.1365-3040.2010.02169.x] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
In order to analyse copper-induced calcium release and (reactive oxygen species) ROS accumulation and their role in antioxidant and defense enzymes activation, the marine alga Ulva compressa was exposed to 10 µM copper for 7 d. The level of calcium, extracellular hydrogen peroxide (eHP), intracellular hydrogen peroxide (iHP) and superoxide anions (SA) as well as the activities of ascorbate peroxidase (AP), glutathione reductase (GR), glutathione-S-transferase (GST), phenylalanine ammonia lyase (PAL) and lipoxygenase (LOX) were determined. Calcium release showed a triphasic pattern with peaks at 2, 3 and 12 h. The second peak was coincident with increases in eHP and iHP and the third peak with the second increase of iHP. A delayed wave of SA occurred after day 3 and was not accompanied by calcium release. The accumulation of iHP and SA was mainly inhibited by organellar electron transport chains inhibitors (OETCI), whereas calcium release was inhibited by ryanodine. AP activation ceased almost completely after the use of OETCI. On the other hand, GR and GST activities were partially inhibited, whereas defense enzymes were not inhibited. In contrast, PAL and LOX were inhibited by ryanodine, whereas AP was not inhibited. Thus, copper stress induces calcium release and organellar ROS accumulation that determine the differential activation of antioxidant and defense enzymes.
Collapse
Affiliation(s)
- Alberto Gonzalez
- Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile
| | | | | | | | | | | | | | | |
Collapse
|
50
|
Jambunathan N, Penaganti A, Tang Y, Mahalingam R. Modulation of redox homeostasis under suboptimal conditions by Arabidopsis nudix hydrolase 7. BMC PLANT BIOLOGY 2010; 10:173. [PMID: 20704736 PMCID: PMC3095304 DOI: 10.1186/1471-2229-10-173] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2010] [Accepted: 08/12/2010] [Indexed: 05/06/2023]
Abstract
BACKGROUND Nudix hydrolases play a key role in maintaining cellular homeostasis by hydrolyzing various nuceloside diphosphate derivatives and capped mRNAs. Several independent studies have demonstrated that Arabidopsis nudix hydrolase 7 (AtNUDT7) hydrolyzes NADH and ADP-ribose. Loss of function Atnudt7-1 mutant plants (SALK_046441) exhibit stunted growth, higher levels of reactive oxygen species, enhanced resistance to pathogens. However, using the same T-DNA line, two other groups reported that mutant plants do not exhibit any visible phenotypes. In this study we analyze plausible factors that account for differences in the observed phenotypes in Atnudt7. Secondly, we evaluate the biochemical and molecular consequences of increased NADH levels due to loss of function of AtNUDT7 in Arabidopsis. RESULTS We identified a novel conditional phenotype of Atnudt7-1 knockout plants that was contingent upon nutrient composition of potting mix. In nutrient-rich Metro-Mix, there were no phenotypic differences between mutant and wild-type (WT) plants. In the nutrient-poor mix (12 parts vermiculite: 3 parts Redi-earth and 1 part sand), mutant plants showed the characteristic stunted phenotype. Compared with WT plants, levels of glutathione, NAD+, NADH, and in turn NADH:NAD+ ratio were higher in Atnudt7-1 plants growing in 12:3:1 potting mix. Infiltrating NADH and ADP-ribose into WT leaves was sufficient to induce AtNUDT7 protein. Constitutive over-expression of AtNudt7 did not alter NADH levels or resistance to pathogens. Transcriptome analysis identified nearly 700 genes differentially expressed in the Atnudt7-1 mutant compared to WT plants grown in 12:3:1 potting mix. In the Atnudt7-1 mutant, genes associated with defense response, proteolytic activities, and systemic acquired resistance were upregulated, while gene ontologies for transcription and phytohormone signaling were downregulated. CONCLUSIONS Based on these observations, we conclude that the differences observed in growth phenotypes of the Atnudt7-1 knockout mutants can be due to differences in the nutrient composition of potting mix. Our data suggests AtNUDT7 plays an important role in maintaining redox homeostasis, particularly for maintaining NADH:NAD+ balance for normal growth and development. During stress conditions, rapid induction of AtNUDT7 is important for regulating the activation of stress/defense signaling and cell death pathways.
Collapse
Affiliation(s)
- Niranjani Jambunathan
- 246 Noble Research Center, Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, Oklahoma, USA
| | - Anuradha Penaganti
- 246 Noble Research Center, Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, Oklahoma, USA
| | - Yuhong Tang
- The Samuel Roberts Noble Foundation Inc., Plant Biology Division, Ardmore, Oklahoma, USA
| | - Ramamurthy Mahalingam
- 246 Noble Research Center, Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, Oklahoma, USA
| |
Collapse
|