The Status of the World's Land and Marine Mammals: Diversity, Threat, and Knowledge

Planning conservation priority areas for marine mammals accounting for human impact, climate change and multidimensionality of biodiversity

Because of the crucial ecological status of marine mammals, identifying priority areas for these species could significantly contribute to achieving the 30 % ocean protection target set by the Kunming-Montreal Global Biodiversity Framework. However, comprehensive conservation priorities requires considering multiple biodiversity dimensions and the impacts of climate change and human activities, which are poorly considered. In this study, we first investigated the distribution patterns of species, functional, and phylogenetic diversity of marine mammals and analyzed their relationship with cumulative anthropogenic impacts and climate change. We then developed conservation plans in which conservation targets of each species were allocated according to their distinctiveness indices, and protection costs were set as cumulative anthropogenic impacts and future climate velocity. The results indicate that incorporating extinction probability into the calculation of distinctiveness indices affects species uniqueness rankings, highlighting the need to consider species threat levels in future conservation efforts. Negative correlations were found for marine mammal diversity with cumulative anthropogenic impacts and climate change, implying that these factors may have already influenced the biodiversity distribution. The results suggest that existing MPAs are exposed to high levels of cumulative human impacts and climate velocity, necessitating further assessment of their effectiveness. In contrast, the low-regret MPAs identified in this study face significantly lower cumulative human impacts and future climate velocity, presenting valuable opportunities for marine mammal conservation.

Integrating cultural dimensions in sperm whale (Physeter macrocephalus) conservation: threats, challenges and solutions

Culture-socially transmitted behaviours shared within a community-can influence animal populations' structure, vulnerability and resilience. Clans of sperm whales in the Eastern Tropical Pacific (ETP) exemplify the profound influence of culture on these dynamics and highlight the challenges of accounting for culture in conservation efforts. Globally, sperm whales are classified as vulnerable, and the ETP sperm whale population has struggled to reach a positive growth rate. This stagnation is partly due to cumulative anthropogenic threats in the region, including fishing conflicts, vessel traffic, pollution, deep sea mining, oil and gas exploration, and anthropogenic climate change. The United Nations Convention on Migratory Species adopted a Concerted Action for ETP sperm whales in 2017, proposing collaborative efforts to address cultural dimensions in conservation. However, knowledge gaps and real-world implementation challenges persist. Here, we review the role of social transmission in shaping sperm whale behaviour and populations, outline current anthropogenic threats and environmental stressors they face in the ETP, and discuss the ongoing challenges of incorporating cultural dimensions into large-scale international conservation efforts. Strengthening transnational collaboration and capitalizing on new technologies for efficient analysis can help bridge these knowledge gaps and enhance future research on this iconic species.This article is part of the theme issue 'Animal culture: conservation in a changing world'.

Macroscale patterns of rodent herbivory damage and underlying mechanisms in forests of China

BACKGROUND

Understanding the macroscale patterns of rodent herbivory damage and their driving factors are essential for effective rodent management. This study examines how climatic factors and human activities influence the large-scale spatial distribution of rodent herbivory damage in forests of China.

RESULTS

I utilized a unique long-term province-level dataset of rodent damage in China to map its extent across the country. A generalized linear mixed model was employed to analyze the relationship between rodent damage, and climatic variables, and human population density (HPD). The results reveal a clear spatial pattern of rodent herbivory damage in China's forests, primarily driven by HPD and precipitation of the warmest quarter, with a secondary influence of diurnal temperature range. These three variables explained approximately 58% of the variation in the geographic pattern of rodent herbivory damage in China's forests. Specifically, rodent damage was negatively correlated with both precipitation of the warmest quarter and HPD. Higher precipitation during the warmest quarter (often as rainstorms) probably exacerbates rodent mortality through flooding their burrows and imposing thermal stress, while higher HPD probably increases predation pressure, further lowering rodent populations. Additionally, rodent damage was positively related to diurnal temperature range, likely because greater diurnal temperature fluctuations impose greater thermal stress on their predator, thereby enhancing rodent survival. Consequently, regions in northwestern China that are arid, experience high diurnal temperature fluctuations and have low human populations, are particularly vulnerable to severe rodent damage. In contrast, southern and southeastern China, with higher precipitation, milder temperature fluctuations, and denser human populations, experience significantly lower rodent damage.

CONCLUSION

The findings suggest that the combination of precipitation during the warmest quarter, diurnal temperature range, and HPD can serve as effective indicators of rodent pest severity in forests. This underscores the need for proactive surveillance and management in arid regions with high diurnal temperature fluctuations and low population densities worldwide.

Spatial mismatches and multi-dimensional conservation priorities for urban birds in China

With increasing urbanization, the importance of urban areas in biodiversity conservation grows. However, traditional conservation efforts are often based on high species richness, may underestimate the value of evolutionary potentials and functional traits that species could provide for the ecosystem processes. In this study, we draw priority maps to capture the priority areas of avian taxonomic, phylogenetic, and functional diversity using a relativity-based prioritization approach. We also explored possible solution for how action could be implemented in those important areas, by assessing the impacts of urbanized and environmental (climate and anthropogenic) factors on bird diversity. The results showed that only 2.1% and 6.9% overlap at the top 10% and 20% prioritization respectively across three diversity dimensions. There were significantly positive relationships between urban bird diversity and precipitation, altitude, and vegetation coverage. Conversely, impermeable surface proportion and temperature had significantly negative effects on phylogenetic and functional diversity. In addition, although little explanatory power, vegetation coverage could suppress the divergences between taxonomic and phylogenetic diversity, while tree canopy height would promote the divergences between taxonomic and functional diversity. This suggests that more vegetation coverage enables persistence of avian lineages, while different tree canopy height separates functionally similar species by offering hierarchical niches. These findings highlight the need to consider multi-dimension priorities for conservation efforts in urban areas. Moreover, better designs in greenness, such as replanting vegetation where necessary and optimizing vertical structure by well-balanced mixture of herbaceous and woody plants could be long-term measures to minimize the anthropogenic impacts on diversity loss.

The Role of Skin-Derived Somatic Cell and Tissue Cryobanks in the Conservation of Aquatic Mammals

Anthropogenic actions, especially inadequate waste disposal, cause permanent effects on aquatic fauna, resulting in a significant loss in their population. In this scenario, in situ and ex situ conservation strategies have been developed for these species. Among these strategies is the formation of somatic cell and tissue banks derived from skin collection that act complementarily to other biotechnologies. These banks contain all the information for genomic, genetic, and proteomic analyses. They are useful in the assessment of the toxicity of pollutants on the physiology of the species and regenerative and reproductive biotechnologies. The formation of these cryobanks involves different steps, including cryopreservation, with the optimization of all steps occurring in a species-specific manner. There is a diversity of studies on aquatic mammals; however, a low quantity compared to the number of studies on land mammals, with more than 80% of species still unexplored. This is mainly due to the difficulty of execution and asepsis in collecting skin from aquatic mammals and the in vitro culture, which seems to require more particularities for it to be successful. Therefore, this review aims to address the current scenario and the steps involved in the conservation of somatic cells and tissues derived from aquatic mammal skin, as well as results that have been achieved in recent years and the prospects.

Den site selection by Indian gray wolves in tribal landscapes of Mahuadanr Wolf Sanctuary considering ecological and cultural factors

Species that rely on dens are integral to sustaining ecosystem balance, and gaining insight into their den selection patterns is essential for successful conservation efforts. The Indian Gray Wolf (Canis lupus pallipes) faces significant challenges in finding safe denning sites amidst India's human-dominated landscapes. The survival of this species depends heavily on its ability to coexist with humans. As one of the oldest wolf lineages, they have evolved separately and adapted to the semi-arid landscapes of India. This study investigates den-site selection within a 64 km² area of the MWS, Jharkhand, India. Between 2022 and 2024, 18 active dens were identified and analysed against 40 random locations to assess the importance of habitat and anthropogenic variables in den-site selection. The results revealed that dens are typically found in areas with abundant Sal (Shorea robusta) trees, steep slopes, and increased shrub cover. This highlights the significance of the Sal tree, where its cultural association helps minimize disturbances, indirectly supporting wolf breeding habitats. This study emphasizes the need to understand the ecological requirements of the Indian Gray Wolf and incorporate traditional cultural practices into wildlife management strategies. By shedding light on den site selection in tribal landscapes, the study offers crucial insights for wildlife managers, enabling them to develop effective conservation plans that promote the survival of Indian wolves and foster coexistence with humans amid evolving environmental conditions.

Molecular Survey of Anaplasmataceae Agents, Rickettsia spp., Bartonella spp., and Piroplasmids in Ectoparasites from Cave-Dwelling Bats in Mainland Portugal

Bats and their ectoparasites play a crucial role in understanding the ecology and transmission of vector-borne pathogens, yet these dynamics remain poorly studied in Portugal. This study aimed to investigate the molecular occurrence of vector-borne bacteria (Anaplasma spp., Bartonella spp., Ehrlichia spp., and Rickettsia spp.) and protozoa (Babesia spp. and Theileria spp.) in ectoparasites of cave-dwelling bats. Bats were sampled from two caves in Portugal, and their ectoparasites included wing mites (Spinturnix myoti), ticks (Ixodes simplex), and bat flies (Penicillidia conspicua and Nycteribia schmidlii). Molecular analyses revealed the presence of Bartonella spp. in S. myoti and N. schmidlii. Phylogenetic inference based on the gltA gene positioned the detected genotypes close to those previously reported in bats and Nycteribiidae flies in Europe, Asia, and Africa. Notably, no DNA from Anaplasmataceae, Rickettsia spp., or piroplasmids was detected. The prevalence of S. myoti was high, with all examined bats being infested, showing notable differences in ectoparasite diversity concerning sex and cave-specific location. These findings suggest that host behavior, environmental conditions, and ectoparasite lifecycles play critical roles in shaping pathogen transmission dynamics. This study advances the understanding of bat ectoparasite-pathogen interactions in a region with limited data and highlights the need for continued research to assess the zoonotic potential and ecological impacts of the Bartonella genotypes detected herein.

R. Carvalho E, Cornélis D, Cremonesi G, Londe de Camargos V, Elimanantsoa I, Espinosa S, Fayolle A, Fonteyn D, Harihar A, Hilser H, Granados A, A. Jansen P, Mohd-Azlan J, Johnson C, Johnson S, Lahkar D, Guimarães Moreira Lima M, Luskin MS, Magioli M, H. Martin E, Martinoli A, Gonçalves Morato R, Mugerwa B, E. Pardo L, Salvador J, Santos F, Vermeulen C, C. Wright P, Rovero F. Landscape-level human disturbance results in loss and contraction of mammalian populations in tropical forests

Tropical forests hold most of Earth's biodiversity and a higher concentration of threatened mammals than other biomes. As a result, some mammal species persist almost exclusively in protected areas, often within extensively transformed and heavily populated landscapes. Other species depend on remaining remote forested areas with sparse human populations. However, it remains unclear how mammalian communities in tropical forests respond to anthropogenic pressures in the broader landscape in which they are embedded. As governments commit to increasing the extent of global protected areas to prevent further biodiversity loss, identifying the landscape-level conditions supporting wildlife has become essential. Here, we assessed the relationship between mammal communities and anthropogenic threats in the broader landscape. We simultaneously modeled species richness and community occupancy as complementary metrics of community structure, using a state-of-the-art community model parameterized with a standardized pan-tropical data set of 239 mammal species from 37 forests across 3 continents. Forest loss and fragmentation within a 50-km buffer were associated with reduced occupancy in monitored communities, while species richness was unaffected by them. In contrast, landscape-scale human density was associated with reduced mammal richness but not occupancy, suggesting that sensitive species have been extirpated, while remaining taxa are relatively unaffected. Taken together, these results provide evidence of extinction filtering within tropical forests triggered by anthropogenic pressure occurring in the broader landscape. Therefore, existing and new reserves may not achieve the desired biodiversity outcomes without concurrent investment in addressing landscape-scale threats.

One-quarter of freshwater fauna threatened with extinction

Freshwater ecosystems are highly biodiverse1 and important for livelihoods and economic development2, but are under substantial stress3. To date, comprehensive global assessments of extinction risk have not included any speciose groups primarily living in freshwaters. Consequently, data from predominantly terrestrial tetrapods4,5 are used to guide environmental policy6 and conservation prioritization7, whereas recent proposals for target setting in freshwaters use abiotic factors8-13. However, there is evidence14-17 that such data are insufficient to represent the needs of freshwater species and achieve biodiversity goals18,19. Here we present the results of a multi-taxon global freshwater fauna assessment for The IUCN Red List of Threatened Species covering 23,496 decapod crustaceans, fishes and odonates, finding that one-quarter are threatened with extinction. Prevalent threats include pollution, dams and water extraction, agriculture and invasive species, with overharvesting also driving extinctions. We also examined the degree of surrogacy of both threatened tetrapods and freshwater abiotic factors (water stress and nitrogen) for threatened freshwater species. Threatened tetrapods are good surrogates when prioritizing sites to maximize rarity-weighted richness, but poorer when prioritizing based on the most range-restricted species. However, they are much better surrogates than abiotic factors, which perform worse than random. Thus, although global priority regions identified for tetrapod conservation are broadly reflective of those for freshwater faunas, given differences in key threats and habitats, meeting the needs of tetrapods cannot be assumed sufficient to conserve freshwater species at local scales.

Accounting for functionality in the identification of global conservation priorities: promises and pitfalls

Whereas preventing species extinctions remains a central objective of conservation efforts, it must be complemented by the long-term preservation of functional ecosystems and of the benefits humans derive from them. Here, I review recent approaches that explicitly account for functionality in setting large-scale conservation priorities, discussing their promise while highlighting challenges and pitfalls. Crossing data on species' distributions and ecological traits has enabled the mapping of global patterns of functional diversity and functional rarity and the identification of species that stand out for their functional distinctiveness. However, the priorities identified through these general indices do not directly address ecosystem functionality, instead, they are methods for ensuring the representation of individual functional traits as intrinsically valuable biodiversity elements. Three other approaches integrate functionality into large-scale priorities by taking into account the specific context of each ecosystem, site or species: the International Union for Conservation of Nature's Red List of Ecosystems, Key Biodiversity Areas and the Green Status of Species. Currently at various stages of development, testing and implementation, these approaches are playing an increasingly important role in the definition, implementation and monitoring of global- and national-scale conservation strategies to ensure the long-term persistence of ecosystem functions and associated ecosystem services.This article is part of the discussion meeting issue 'Bending the curve towards nature recovery: building on Georgina Mace's legacy for a biodiverse future'.

Identification of the enigmatic Deraniyagala's beaked whale

It is essential to discover and identify animals in species level in the wild to achieve the collection of baseline data and benefit better understanding and conservation of the rare species. However, this is far from being realized for many beaked whales in the deep sea, including the Deraniyagala's beaked whale (Mesoplodon hotaula), which is one of the least-known whales with no confirmed live sightings at sea yet all over the world. Here, we provide the first robust field identification of M. hotaula, by integrating DNA sequencing of skin biopsies, acoustic data, and photographs. Our discovery illustrates that M. hotaula has distinguishing acoustic and morphological characteristics, enabling us to distinguish it from other mesoplodonts in the wild. The identification of M. hotaula in species level is rapidly advancing our knowledge on its distribution range, habitat characteristics, behavior, ontogenetic color pattern development, group size and structure, and potential threats.

Reduced Representation and Whole-Genome Sequencing Approaches Highlight Beluga Whale Populations Associated to Eastern Canada Summer Aggregations

Effective conservation strategies inherently depend on preserving populations, which in turn requires accurate tools for their detection. Beluga whales (Delphinapterus leucas) inhabit the circumpolar Arctic and form discrete summer aggregations. Previous genetic studies using mitochondrial and microsatellite loci have delineated distinct populations associated to summer aggregations but the extent of dispersal and interbreeding among these populations remains largely unknown. Such information is essential for the conservation of populations in Canada as some are endangered and harvested for subsistence by Inuit communities. Here, we used reduced representation and whole-genome sequencing approaches to characterize population structure of beluga whales in eastern Canada and examine admixture between populations. A total of 905 beluga whales sampled between 1989 and 2021 were genotyped. Six main genomic clusters, with potential subclusters, were identified using multiple proxies for population structure. Most of the six main genomic clusters were consistent with previously identified populations, except in southeast Hudson Bay where two clusters were identified. Beluga summer aggregations may consequently be comprised of more than one distinct population. A low number of dispersers were identified between summer aggregations and limited interbreeding was detected between the six genomic clusters. Our work highlights the value of genomic approaches to improve our understanding of population structure and reproductive behavior in beluga whales, offering insights applicable to other cetacean species of conservation concern. An expansion of the geographical scope and increase in number of genotyped individuals will, however, be needed to improve the characterization of the finer scale structure and of the extent of admixture between populations.

Investigation into the causes of mortality in cetaceans and sirenian populations in the Andaman Sea, Thailand: A retrospective analysis spanning 2018-2023

Background and Aim

Cetaceans and sirenians are endangered marine mammals that are threatened by stranding and mortality. In Thailand's Andaman Sea, limited data exist on the causes and patterns of these events. This retrospective study investigated the characterization and underlying causes of cetacean and sirenian mortality events in the Andaman Sea from 2018 to 2023 using information from the Department of Marine and Coastal Resources, Thailand.

Materials and Methods

Data on 363 stranded marine mammals, including both live and dead strandings, species types, carcass condition, and necropsy findings and diagnoses, were gathered and analyzed to classify and determine the main factors contributing to mortality, encompassing both direct human-related and non-direct human-related causes.

Results

From 2018 to 2023, 231 cetaceans and 132 sirenians were documented, representing six families and 19 species. Of these animals, 18.18% (66/363) were stranded alive and 81.81% (297/363) were found dead. The most common species were dugong (Dugong dugon) and Indo-Pacific humpback dolphin (Sousa chinensis). Detailed postmortem analyses of 107 specimens showed that 17.76% (19/107) of deaths were anthropogenic, affecting 8 sirenians and 11 cetaceans. The majority of deaths were non-anthropogenic, involving 34 sirenians and 54 cetaceans. In addition, 223 stranded animals could not be fully assessed due to carcass condition.

Conclusion

A high cetacean and sirenian mortality rate in the Andaman Sea can be attributed to non-anthropogenic factors. The dugong and Indo-Pacific humpback dolphin were the most frequently encountered species. This report enhances our understanding of marine mammal mortality in Thailand and underscores the need for improved health management and diagnostic responses.

Preventing extinction in an age of species migration and planetary change

International and national conservation policies almost exclusively focus on conserving species in their historic native ranges, thus excluding species that have been introduced by people and some of those that have extended their ranges on their own accord. Given that many of such migrants are threatened in their native ranges, conservation goals that explicitly exclude these populations may overlook opportunities to prevent extinctions and respond dynamically to rapidly changing environmental and climatic conditions. Focusing on terrestrial mammals, we quantified the number of threatened mammals that have established new populations through assisted migration (i.e., introduction). We devised 4 alternative scenarios for the inclusion of assisted-migrant populations in mainstream conservation policy with the aim of preventing global species extinctions. We then used spatial prioritization algorithms to simulate how these scenarios could change global spatial conservation priorities. We found that 22% (70 species out of 265) of all identified assisted-migrant mammals were threatened in their native ranges, mirroring the 25% of all mammals that are threatened. Reassessing global threat statuses by combining native and migrant ranges reduced the threat status of 23 species (∼33% of threatened assisted migrants). Thus, including migrant populations in threat assessments provides a more accurate assessment of actual global extinction risk among species. Spatial prioritization simulations showed that reimagining the role of assisted-migrant populations in preventing species extinction could increase the importance of overlooked landscapes, particularly in central Australia, Europe, and the southwestern United States. Our results indicated that these various and nonexhaustive ways to consider assisted-migrant populations, with due consideration of potential conservation conflicts with resident taxa, may provide unprecedented opportunities to prevent species extinctions.

Drivers of geophagy of large-bodied amazonian herbivorous and frugivorous mammals

Mineral licks, critical for the survival of many large-bodied mammals in the Amazon, serve as keystone resources that influence the behavior and ecological dynamics of these species. This study presents the most comprehensive analysis to date on the drivers of geophagy-the consumption of soil by animals-at mineral licks in the Peruvian Amazon. Using a combination of camera traps and soil analyses from 52 mineral licks, we examined the visitation patterns of six large-bodied mammals: the black agouti (Dasyprocta fuliginosa), paca (Cuniculus paca), collared peccary (Pecari tajacu), Brazilian porcupine (Coendou prehensilis), lowland tapir (Tapirus terrestris), and red howler monkey (Alouatta seniculus). Our results reveal that mineral licks provide essential nutrients, particularly sodium (Na), which may be deficient in the diets of frugivorous species such as agouti, paca, and red howler monkey, supporting the mineral supplementation hypothesis. Conversely, the toxin adsorption hypothesis, which posits that animals consume soil to mitigate dietary toxins, was most strongly supported for the herbivorous Brazilian porcupine. The omnivorous collared peccary and the mixed-diet tapir exhibited complex interactions between soil characteristics, suggesting that both mineral supplementation and toxin adsorption play roles in their geophagy. This study highlights the importance of mineral licks for the conservation of Amazonian mammals, emphasizing their role in supporting biodiversity by providing critical nutritional resources that enhance species fitness and ecological resilience. Our findings underscore the need for the protection of these sites, which are integral not only to the survival of individual species but also to the health of the broader Amazonian ecosystem.

Unveiling the Hidden Causes: Identifying the Drivers of Human-Elephant Conflict in Nilgiri Biosphere Reserve, Western Ghats, Southern India

Since the human population is growing beyond the earth's ability to sustain it, more people are being brought into contact with wildlife, leading to increasing human-wildlife conflict. The Asian elephant, a wide-ranging megaherbivore, is being increasingly threatened by human-elephant conflict [HEC]. Its conservation depends on identifying the causes of HEC and implement measure to mitigate the HEC effectively. We studied the drivers of HEC among five forest divisions in Western Ghats, India, that support a high density of elephants across Asia. Comparing the last six years' data on HEC with 26 ecological covariates in the GLMM framework, we identified spatiotemporal variations and drivers of crop, and property damages and human casualties. Spatially, HEC was highest in the territorial division and lowest in those declared as Protected Areas earlier. The comparison of crop damage with covariates showed that crop damage decreased with the grass biomass index, elephant density, extent of dry-thorn, and deciduous habitats, and forest range area, while it increased with adult male % and forest range perimeter. Similarly, the property damage by elephants increased with crop damage frequency and human settlement/cultivation area, but decreased with grass biomass, forest range area, and deciduous habitat area. Human casualties due to elephants increased with property damage, ambient temperature, and forest range perimeter, but decreased with grass biomass. Overall, the decrease in HEC with grass biomass, and the increase in HEC with human settlement and forest range perimeter indicate that anthropogenic pressure that decreases the grass biomass and degrades the habitat is the likely root cause of HEC, and minimizing it would reduce overall HEC.

A continental-wide decline of occupancy and diversity in five Neotropical carnivores

The Neotropics are a global biodiversity hotspot that has undergone dramatic land use changes over the last decades. However, a temporal perspective on the continental-wide distributions of species in this region is still missing. To unveil it, we model the entire area of occupancy of five Neotropical carnivore species at two time periods (2000-2013 and 2014-2021) using integrated species distribution models (ISDMs) in a Bayesian framework. The carnivores are the jaguarundi (Herpailurus yagouaroundi), margay (Leopardus wiedii), maned wolf (Chrysocyon brachyurus), tayra (Eira barbara), and giant otter (Pteronura brasiliensis). We mapped the temporal change, the areas where gains and losses accumulated for all species (hotspots of change) and calculated the temporal species turnover and change in spatial turnover. We show that (1) most carnivore species have declined their area of occupancy (i.e., range size) in the last two decades, (2) their diversity has decreased over time, mostly in the Chaco region, and (3) that hotspots of fast species composition turnover are in Chaco, the Caatinga region, and northwest of Mexico. We discuss how these newly identified hotspots of change overlap with regions of well-known and pronounced land use transformation. These estimated patterns of overall decline are alarming, more so given that four out of the five species had been classified as not threatened by IUCN. The official global threat status of these species may need to be re-evaluated. All this would be invisible if standard forecasts, local expert knowledge, or static threat criteria, such as range size, were used. We thus provide a new approach to evaluate past species range dynamics based on multiple lines of evidence, which can be employed over more species in the future, particularly in under-sampled regions.

Ecological and anthropogenic factors influencing the Summer habitat use of Bos gaurus and its conservation threats in Chitwan National Park, Nepal

Background

Gaur (Bos gaurus) is listed as a vulnerable species in the IUCN Red List of threatened species due to the rapid population decline caused by human pressures in their habitats. To develop successful conservation plans, it is essential to understand the relationship between Gaur and their habitats. This study aimed to investigate the factors influencing Gaur habitat use and identify and rank conservation threats in Chitwan National Park, Nepal.

Methods

Using line transect surveys, we recorded Gaur's presence via direct sightings and indirect signs (dung, footprints, horns) over an area of 176 km2 in July and August 2022. We used binary logistic regression models to determine the collected ecological and anthropogenic factors influencing the occurrence of Gaur and the relative whole-site threat ranking method to rank conservation threats.

Results

The results revealed that the probability of Gaur occurrence increases with moderate to high canopy cover, riverine and Shorea robusta dominated forests, and nearest distance to road/path/firelines, while decreasing with the presence of predators. Uncontrolled fire, invasive species, human disturbances, and climate change were ranked as the most prevailing threats to Gaur in our study area. Conservation managers should implement effective habitat management interventions, such as construction of waterhole, firelines maintenance, grassland management, and control of invasive species in the potential habitats, to safeguard and maintain the sustainability of Gaur populations and associated herbivores. Future studies should consider larger geographical settings and multiple seasons, and habitat suitability assessments should be conducted to determine current and future suitable habitat refugia for Gaur and other threatened wildlife species at the landscape level.

Using historical habitat loss to predict contemporary mammal extirpations in Neotropical forests

Understanding which species will be extirpated in the aftermath of large-scale human disturbance is critical to mitigating biodiversity loss, particularly in hyperdiverse tropical biomes. Deforestation is the strongest driver of contemporary local extinctions in tropical forests but may occur at different tempos. The 2 most extensive tropical forest biomes in South America-the Atlantic Forest and the Amazon-have experienced historically divergent pathways of habitat loss and biodiversity decay, providing a unique case study to investigate rates of local species persistence on a single continent. We quantified medium- to large-bodied mammal species persistence across these biomes to elucidate how landscape configuration affects their persistence and associated ecological functions. We collected occurrence data for 617 assemblages of medium- to large-bodied mammal species (>1 kg) in the Atlantic Forest and the Amazon. Analyzing natural habitat cover based on satellite data (1985-2022), we employed descriptive statistics and generalized linear models (GLMs) to investigate ecospecies occurrence patterns in relation to habitat cover across the landscapes. The subregional erosion of Amazonian mammal assemblage diversity since the 1970s mirrors that observed since the colonial conquest of the Atlantic Forest, given that 52.8% of all Amazonian mammals are now on a similar trajectory. Four out of 5 large mammals in the Atlantic Forest were prone to extirpation, whereas 53% of Amazonian mammals were vulnerable to extirpation. Greater natural habitat cover increased the persistence likelihood of ecospecies in both biomes. These trends reflected a median local species loss 63.9% higher in the Atlantic Forest than in the Amazon, which appears to be moving toward a turning point of forest habitat loss and degradation. The contrasting trajectories of species persistence in the Amazon and Atlantic Forest domains underscore the importance of considering historical habitat loss pathways and regional biodiversity erosion in conservation strategies. By focusing on landscape configuration and identifying essential ecological functions associated with large vertebrate species, conservation planning and management practices can be better informed.

One way or another: Combined effect of dispersal and asymmetry on total realized asymptotic population abundance

Understanding the consequences on population dynamics of the variability in dispersal over a fragmented habitat remains a major focus of ecological and environmental inquiry. Dispersal is often asymmetric: wind, marine currents, rivers, or human activities produce a preferential direction of dispersal between connected patches. Here, we study how this asymmetry affects population dynamics by considering a discrete-time two-patch model with asymmetric dispersal. We conduct a rigorous analysis of the model and describe all the possible response scenarios of the total realized asymptotic population abundance to a change in the dispersal rate for a fixed symmetry level. In addition, we discuss which of these scenarios can be achieved just by restricting mobility in one specific direction. Moreover, we also report that changing the order of events does not alter the population dynamics in our model, contrary to other situations discussed in the literature.

Combining camera trap surveys and IUCN range maps to improve knowledge of species distributions

Reliable maps of species distributions are fundamental for biodiversity research and conservation. The International Union for Conservation of Nature (IUCN) range maps are widely recognized as authoritative representations of species' geographic limits, yet they might not always align with actual occurrence data. In recent area of habitat (AOH) maps, areas that are not habitat have been removed from IUCN ranges to reduce commission errors, but their concordance with actual species occurrence also remains untested. We tested concordance between occurrences recorded in camera trap surveys and predicted occurrences from the IUCN and AOH maps for 510 medium- to large-bodied mammalian species in 80 camera trap sampling areas. Across all areas, cameras detected only 39% of species expected to occur based on IUCN ranges and AOH maps; 85% of the IUCN only mismatches occurred within 200 km of range edges. Only 4% of species occurrences were detected by cameras outside IUCN ranges. The probability of mismatches between cameras and the IUCN range was significantly higher for smaller-bodied mammals and habitat specialists in the Neotropics and Indomalaya and in areas with shorter canopy forests. Our findings suggest that range and AOH maps rarely underrepresent areas where species occur, but they may more often overrepresent ranges by including areas where a species may be absent, particularly at range edges. We suggest that combining range maps with data from ground-based biodiversity sensors, such as camera traps, provides a richer knowledge base for conservation mapping and planning.

Drivers of geophagy by red brocket deer (Mazama americana) at Amazonian interior forest mineral licks

Mineral licks are key ecological components of the Amazon rainforest, providing critical dietary functions for herbivorous and frugivorous mammals and birds, which help maintain the structure and function of the forest itself through seed and nutrient dispersal. One of the most frequent visitors of interior forest mineral licks in the Amazon is the red brocket deer (Mazama americana), a large-bodied ruminant frugivore and seed predator. While several hypotheses for the drivers of geophagy exist, including mineral supplementation, toxin adsorption, and habitat selection, robust data on geophagy for the red brocket deer for large numbers of mineral licks is nonexistent. We used soil data from 83 mineral licks in conjunction with camera trap data from 52 of those mineral licks and a mixed-effects modeling approach to test the three proposed hypotheses of geophagy for the red brocket deer. We found that consumed soils at mineral licks had elevated concentrations of almost all major and minor biologically active minerals measured, including Ca, Na, Mg, K, Cu, Zn, and Mn. Model results suggest that all three hypotheses hold true to some extent for the red brocket deer, with the greatest support for the mineral supplementation hypothesis, in particular with respect to Mg, Ca, Na, Cu, and Zn. This study provides critical information on the feeding ecology of the red brocket deer in the wild, and the first robust analysis of geophagy of an Amazonian mammal involving a large sample size of interior forest mineral licks.

Bee species richness through time in an urbanizing landscape of the southeastern United States

Compared to non-urban environments, cities host ecological communities with altered taxonomic diversity and functional trait composition. However, we know little about how these urban changes take shape over time. Using historical bee (Apoidea: Anthophila) museum specimens supplemented with online repositories and researcher collections, we investigated whether bee species richness tracked urban and human population growth over the past 118 years. We also determined which species were no longer collected, whether those species shared certain traits, and if collector behavior changed over time. We focused on Wake County, North Carolina, United States where human population size has increased over 16 times over the last century along with the urban area within its largest city, Raleigh, which has increased over four times. We estimated bee species richness with occupancy models, and rarefaction and extrapolation curves to account for imperfect detection and sample coverage. To determine if bee traits correlated with when species were collected, we compiled information on native status, nesting habits, diet breadth, and sociality. We used non-metric multidimensional scaling to determine if individual collectors contributed different bee assemblages over time. In total, there were 328 species collected in Wake County. We found that although bee species richness varied, there was no clear trend in bee species richness over time. However, recent collections (since 2003) were missing 195 species, and there was a shift in trait composition, particularly lost species were below-ground nesters. The top collectors in the dataset differed in how often they collected bee species, but this was not consistent between historic and contemporary time periods; some contemporary collectors grouped closer together than others, potentially due to focusing on urban habitats. Use of historical collections and complimentary analyses can fill knowledge gaps to help understand temporal patterns of species richness in taxonomic groups that may not have planned long-term data.

DNA barcoding the ichthyofauna of the Beibu Gulf: Implications for fisheries management in a seafood market hub

The Beibu Gulf in China is situated in the tropics, in the western Pacific Ocean. It is an emblematic region combining proximity to a marine biodiversity hotspot and a major seafood hub. Intensification of marine fishing and ocean warming led to a drastic decline in fish populations in the Beibu Gulf during the last decades. This situation urges the development of molecular resources of the Beibu Gulf fish fauna in order to enable automated molecular identifications at the species level for next-generation monitoring. With this objective, we present the results of a large-scale campaign to DNA barcode fishes of the Beibu Gulf. We successfully generated 789 new DNA barcodes corresponding to 263 species which, together with 291 sequences mined from Genbank and BOLD, resulted in a reference library of 1080 sequences from 285 species. Based on the use of four DNA-based species delimitation methods (BIN, ASAP, mPTP, mGMYC), a total of 285 Molecular Operational Taxonomical Units (MOTUs). A single case of cryptic diversity was detected in Scomberomorus guttatus and a single species pair was not captured by delimitation methods. Intraspecific K2P genetic distances averaged 0.36% among sequences within species, whereas K2P genetic distances among species within genera averaged 6.96%. The most speciose families in open water trawling differ from those at fish market, and discrepancies with historical data are discussed in the light of recently documented stock collapses.

Renal adaptation in relation to insectivorous feeding habit in the greater mouse-eared bat, Myotis myotis (Chiroptera: Vespertilionidae)

We examined the histological structure of the kidneys of Myotis myotis to better understand their structural adaptations to dietary habits. M. myotis is an insectivorous bat species that belongs to the family Vespertilionidae. The kidneys of M. myotis are unilobular, bean-shaped, and surrounded by a renal capsule. The two parts are distinguished by a thin cortex and a thicker medulla. Renal corpuscles consist of the glomerulus and Bowman's capsule. The proximal tubule consists of cubic cells with a well-developed brush border, whereas the distal tubule is lined with a simple cubic epithelium without a brush border. The Henle's loop, located in the medullary region, was composed of flat cells. The microvilli of proximal tubule epithelial cells and basal lamina of proximal and distal tubule epithelial cells were periodic acid Schiff (PAS)-positive. The PAS-positive reaction of the microvilli of proximal tubular epithelial cells and basal lamina of proximal and distal tubule epithelial cells is due to the presence of glycogen, which may be used as an energy substrate during absorption. The presence of acidic glycoconjugates in the papilla was demonstrated by Alcian blue (pH 2.5)-PAS staining. According to the result of silver impregnation staining, it was determined that reticular fibers form a dense fibrillary network in the kidney parenchymal tissue. Reticular fibers are responsible for demarcating and supporting the borders of cells by forming a thin network of fibrils beneath the basal lamina of the cells. Structural features in the kidney, such as a thin cortex and thicker medulla, long conical papilla, and division of the thick medulla into inner and outer regions, of M. myotis may be an adaptation to produce concentrated urine, thereby reducing water loss associated with insectivorous feeding habits.

Alternative and legacy flame retardants in marine mammals from three northern ocean regions

Flame retardants are globally distributed contaminants that have been linked to negative health effects in humans and wildlife. As top predators, marine mammals bioaccumulate flame retardants and other contaminants in their tissues which is one of many human-imposed factors threatening population health. While some flame retardants, such as the polybrominated diphenyl ethers (PBDE), have been banned because of known toxicity and environmental persistence, limited data exist on the presence and distribution of current-use alternative flame retardants in marine mammals from many industrialized and remote regions of the world. Therefore, this study measured 44 legacy and alternative flame retardants in nine marine mammal species from three ocean regions: the Northwest Atlantic, the Arctic, and the Baltic allowing for regional, species, age, body condition, temporal, and tissue comparisons to help understand global patterns. PBDE concentrations were 100-1000 times higher than the alternative brominated flame retardants (altBFRs) and Dechloranes. 2,2',4,5,5'-pentabromobiphenyl (BB-101) and hexabromobenzene (HBBZ) were the predominant altBFRs, while Dechlorane-602 was the predominant Dechlorane. This manuscript also reports only the second detection of hexachlorocyclopentadienyl-dibromocyclooctane (HCDBCO) in marine mammals. The NW Atlantic had the highest PBDE concentrations followed by the Baltic and Arctic which reflects greater historical use of PBDEs in North America compared to Europe and greater industrialization of North America and Baltic countries compared to the Arctic. Regional patterns for other compounds were more complicated, and there were significant interactions among species, regions, body condition and age class. Lipid-normalized PBDE concentrations in harbor seal liver and blubber were similar, but HBBZ and many Dechloranes had higher concentrations in liver, indicating factors other than lipid dynamics affect the distribution of these compounds. The health implications of contamination by this mixture of compounds are of concern and require further research.

Impact of chemical pollution on threatened marine mammals: A systematic review

Marine mammals, due to their long life span, key position in the food web, and large lipid deposits, often face significant health risks from accumulating contaminants. This systematic review examines published literature on pollutant-induced adverse health effects in the International Union for Conservation of Nature (IUCN) red-listed marine mammal species. Thereby, identifying gaps in literature across different extinction risk categories, spatial distribution and climatic zones of studied habitats, commonly used methodologies, researched pollutants, and mechanisms from cellular to population levels. Our findings reveal a lower availability of exposure-effect data for higher extinction risk species (critically endangered 16%, endangered 15%, vulnerable 66%), highlighting the need for more research. For many threatened species in the Southern Hemisphere pollutant-effect relationships are not established. Non-destructively sampled tissues, like blood or skin, are commonly measured for exposure assessment. The most studied pollutants are POPs (31%), metals (30%), and pesticides (17%). Research on mixture toxicity is scarce while pollution-effect studies primarily focus on molecular and cellular levels. Bridging the gap between molecular data and higher-level effects is crucial, with computational approaches offering a high potential through in vitro to in vivo extrapolation using (toxico-)kinetic modelling. This could aid in population-level risk assessment for threatened marine mammals.

Red-list status and extinction risk of the world's whales, dolphins, and porpoises

To understand the scope and scale of the loss of biodiversity, tools are required that can be applied in a standardized manner to all species globally, spanning realms from land to the open ocean. We used data from the International Union for the Conservation of Nature Red List to provide a synthesis of the conservation status and extinction risk of cetaceans. One in 4 cetacean species (26% of 92 species) was threatened with extinction (i.e., critically endangered, endangered, or vulnerable) and 11% were near threatened. Ten percent of cetacean species were data deficient, and we predicted that 2-3 of these species may also be threatened. The proportion of threatened cetaceans has increased: 15% in 1991, 19% in 2008, and 26% in 2021. The assessed conservation status of 20% of species has worsened from 2008 to 2021, and only 3 moved into categories of lesser threat. Cetacean species with small geographic ranges were more likely to be listed as threatened than those with large ranges, and those that occur in freshwater (100% of species) and coastal (60% of species) habitats were under the greatest threat. Analysis of odontocete species distributions revealed a global hotspot of threatened small cetaceans in Southeast Asia, in an area encompassing the Coral Triangle and extending through nearshore waters of the Bay of Bengal, northern Australia, and Papua New Guinea and into the coastal waters of China. Improved management of fisheries to limit overfishing and reduce bycatch is urgently needed to avoid extinctions or further declines, especially in coastal areas of Asia, Africa, and South America.

More losers than winners: investigating Anthropocene defaunation through the diversity of population trends

The global-scale decline of animal biodiversity ('defaunation') represents one of the most alarming consequences of human impacts on the planet. The quantification of this extinction crisis has traditionally relied on the use of IUCN Red List conservation categories assigned to each assessed species. This approach reveals that a quarter of the world's animal species are currently threatened with extinction, and ~1% have been declared extinct. However, extinctions are preceded by progressive population declines through time that leave demographic 'footprints' that can alert us about the trajectories of species towards extinction. Therefore, an exclusive focus on IUCN conservation categories, without consideration of dynamic population trends, may underestimate the true extent of the processes of ongoing extinctions across nature. In fact, emerging evidence (e.g. the Living Planet Report), reveals a widespread tendency for sustained demographic declines (an average 69% decline in population abundances) of species globally. Yet, animal species are not only declining. Many species worldwide exhibit stable populations, while others are even thriving. Here, using population trend data for >71,000 animal species spanning all five groups of vertebrates (mammals, birds, reptiles, amphibians and fishes) and insects, we provide a comprehensive global-scale assessment of the diversity of population trends across species undergoing not only declines, but also population stability and increases. We show a widespread global erosion of species, with 48% undergoing declines, while 49% and 3% of species currently remain stable or are increasing, respectively. Geographically, we reveal an intriguing pattern similar to that of threatened species, whereby declines tend to concentrate around tropical regions, whereas stability and increases show a tendency to expand towards temperate climates. Importantly, we find that for species currently classed by the IUCN Red List as 'non-threatened', 33% are declining. Critically, in contrast with previous mass extinction events, our assessment shows that the Anthropocene extinction crisis is undergoing a rapid biodiversity imbalance, with levels of declines (a symptom of extinction) greatly exceeding levels of increases (a symptom of ecological expansion and potentially of evolution) for all groups. Our study contributes a further signal indicating that global biodiversity is entering a mass extinction, with ecosystem heterogeneity and functioning, biodiversity persistence, and human well-being under increasing threat.

Why Are We Still a Worm World in the 2020s? An Overview of Risk Factors and Endemicity for Soil-Transmitted Helminthiasis

PURPOSE

Soil-transmitted helminthiasis (STH) is one of the most common chronic infections in developing countries associated with poor socioeconomic and sanitary conditions. The main objective of this overview was to evaluate the influence of environmental factors, risk factors related to the host, and control strategies on the prevalence of STH in different regions of the world.

METHODS

LILACS, PubMed, Web of Knowledge, Embase, the Cochrane Library, and Clinical Trials (gray literature) databases were used to obtain the systematic reviews published until December 2020. The methodological quality of systematic reviews was assessed using the standard criteria recommended by AMSTAR.

RESULTS

The initial results of the bibliographic search identified 1448 articles, of which 66 studies were read in full and 16 met the inclusion criteria. All the reviews included in this overview associated variations in the global prevalence of STH with at least one of the factors related to the environment, host, and/or control strategies. Climate, temperature, soil moisture, precipitation, mass drug administration, lack of access to water, sanitation and hygiene (WASH), and non-use of footwear were considered the main factors associated with the prevalence of STH. Socioeconomic factors, low educational level, and wearing shoes were universal factors related to prevalence, regardless of the location studied.

CONCLUSION

The combination of environmental factors, with factors associated with hosts that predispose infection and reinfection of helminths, as well as the adoption of control strategies based on the treatment of target populations instead of the entire population, influenced the prevalence of STH in all the continents evaluated.

Biocultural aspects of species extinctions

Predicting whether a species is likely to go extinct (or not) is one of the fundamental objectives of conservation biology, and extinction risk classifications have become an essential tool for conservation policy, planning and research. This sort of prediction is feasible because the extinction processes follow a familiar pattern of population decline, range collapse and fragmentation, and, finally, extirpation of sub-populations through a combination of genetic, demographic and environmental stochasticity. Though less well understood and rarely quantified, the way in which science and society respond to population decline, extirpation and species extinction can also have a profound influence, either negative or positive, on whether a species goes extinct. For example, species that are highly sought after by collectors and hobbyists can become more desirable and valuable as they become rarer, leading to increased demand and greater incentives for illegal trade - known as the anthropogenic Allee effect. Conversely, species that are strongly linked to cultural identity are more likely to benefit from sustainable management, high public support for conservation actions and fund-raising, and, by extension, may be partially safeguarded from extinction. More generally, human responses to impending extinctions are extremely complex, are highly dependent on cultural and socioeconomic context, and have typically been far less studied than the ecological and genetic aspects of extinction. Here, we identify and discuss biocultural aspects of extinction and outline how recent advances in our ability to measure and monitor cultural trends with big data are, despite their intrinsic limitations and biases, providing new opportunities for incorporating biocultural factors into extinction risk assessment.

Diversity, distribution and intrinsic extinction vulnerability of exploited marine bivalves

Marine bivalves are important components of ecosystems and exploited by humans for food across the world, but the intrinsic vulnerability of exploited bivalve species to global changes is poorly known. Here, we expand the list of shallow-marine bivalves known to be exploited worldwide, with 720 exploited bivalve species added beyond the 81 in the United Nations FAO Production Database, and investigate their diversity, distribution and extinction vulnerability using a metric based on ecological traits and evolutionary history. The added species shift the richness hotspot of exploited species from the northeast Atlantic to the west Pacific, with 55% of bivalve families being exploited, concentrated mostly in two major clades but all major body plans. We find that exploited species tend to be larger in size, occur in shallower waters, and have larger geographic and thermal ranges-the last two traits are known to confer extinction-resistance in marine bivalves. However, exploited bivalve species in certain regions such as the tropical east Atlantic and the temperate northeast and southeast Pacific, are among those with high intrinsic vulnerability and are a large fraction of regional faunal diversity. Our results pinpoint regional faunas and specific taxa of likely concern for management and conservation.

Neglected zoonotic helminthiases in wild canids: new insights from South America

The global threat of neglected tropical diseases (NTDs) constitutes a public health issue in underdeveloped countries. Zoonotic helminthiases are the most common human NTD agents in developing countries in sub-Saharan Africa, Asia, and the Americas, causing a global burden of disease that exceeds that of more recognized infectious diseases such as malaria and tuberculosis. Wild canids are well-known mammals that act as natural reservoirs of zoonotic-relevant helminthiasis worldwide, thus playing a pivotal role in their epidemiology and transmission to humans. Here we evaluate the occurrence of zoonotic gastrointestinal helminths in two Neotropical wild canid species from the Amazonian and Andean regions of Colombia, i.e., the bush dog (Speothos venaticus) and the crab-eating fox (Cerdocyon thous). We recovered tapeworm proglottids from bush dog fecal samples and identified them molecularly as the canine-specific lineage of Dipylidium caninum by using cytochrome c oxidase subunit I (cox1) gene sequences. Moreover, examination of a crab-eating fox during necropsy revealed the presence of non-embryonated eggs of the neglected nematode Lagochilascaris cf. minor, in addition to eggs and gravid proglottids of the cestode Spirometra mansoni. These findings represent the first report of zoonotic-relevant cestodes, i.e., D. caninum ("canine genotype"), S. mansoni, and the nematode L. cf. minor, in bush dogs and crab-eating foxes as final hosts. The occurrence of these zoonotic helminthiases in wild canid species calls for regular monitoring programs to better understand the epidemiology and transmission routes of neglected dipylidiasis, lagochilascariosis, and sparganosis in South America.

Identifying species likely threatened by international trade on the IUCN Red List can inform CITES trade measures

Overexploitation is a major threat to biodiversity and international trade in many species is regulated through the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). However, there is no established method to systematically determine which species are most at risk from international trade to inform potential trade measures under CITES. Here, we develop a mechanism using the International Union for Conservation of Nature's Red List of Threatened Species to identify species that are likely to be threatened by international trade. Of 2,211 such species, CITES includes 59% (1,307 species), leaving two-fifths overlooked and in potential need of international trade regulation. Our results can inform deliberations on potential proposals to revise trade measures for species at CITES Conference of the Parties meetings. We also show that, for taxa with biological resource use documented as a threat, the number of species threatened by local and national use is four times greater than species likely threatened by international trade. To effectively address the overexploitation of species, interventions focused on achieving sustainability in international trade need to be complemented by commensurate measures to ensure that local and national use and trade of wildlife is well-regulated and sustainable.

Morphometric analysis and roosting ecology of bat species Pteropus Medius in Mansehra, Khyber Pakhtunkhwa, Pakistan

Morphometric measurement and roosting ecology of Pteropus medius were aimed to find out in Mansehra district of KP, Pakistan. Total 3149 numbers of bats were found in eight biological spots visited; Baffa Doraha, Darband, Dadar, Jallu, Hazara University, Garhi Habibullah Chattar Plain and Jabori, in total 299 numbers of different species of trees including; Morus alba, Pinus raxburghi, Eucalyptus camaldulensis, Morus nigra, Grevillea robusta, Brousonetia papyrifera, Platanus orientalis, Ailanthus altissima, Hevea brasiliensis and Populus nigra. Morphometric features were measured and found vary according to sex of the bats. The average wing span, wing`s length from tip of wing to neck, from thumb to tip of wing and the body`s length from head and claws were recorded to be 102.98 cm, 49.07cm, 28.7 cm and 22.78 cm respectively in males while 93.67 cm, 44.83cm, 24.78cm and 22.78 cm respectively in female bats. Mean circumference of the body including wings and without wing were measured as 22.78 cm and 17.29 cm in males and that of female were 20.07 cm and 16.9 cm. Average length of thumb 3.64 cm, ear`s length 3.1 cm, snout 5.62cm, eye length were 1.07 cm for both sexes and length between the feet in extended position were16.3 cm. Generally different measurement of males bodies were found to be greater than female such as mean body surface area, mass, volume and pressure were found to be 2691.79 cm2, 855.7gm,1236.4 ml and 295.77 dyne/ c m 3 for male and 2576.46 cm2, 852.71gm,1207 ml and 290.2 dyne/ c m 3 respectively for female. While weight and density for both males and females bats were same with mean of 8.59 newton and 0.701 g/m3. Findings of current reports can add valued information in literature about bats, which can be used for species identification and conservation.

Tapping into natural history collections to assess latitudinal gradients of parasite diversity

Parasites are key components of the biosphere not only due to their huge diversity, but also because they exert important influences on ecological processes. Nevertheless, we lack an understanding of the biogeographical patterns of parasite diversity. Here, we tap into the potential of biodiversity collections for understanding parasite biogeography. We assess species richness of supracommunities of helminth parasites infecting mammal assemblages in the Nearctic, and describe its relation to latitude, climate, host diversity, and land area. We compiled data from parasitology collections and assessed parasite diversity in Nearctic ecoregions for the entire parasite supracommunity of mammals in each ecoregion, as well as separately from carnivores and rodents to explore the effect of host taxonomic resolution on observed patterns. For carnivores, we found evidence of a negative latitudinal gradient, while parasites of rodents displayed no clear pattern. We found that parasite diversity was positively correlated with mean annual temperature and negatively correlated with seasonal precipitation. Parasite richness shows a diversity peak at intermediate host richness values and in carnivores correlates with temperature and seasonal precipitation. Rodent parasite diversity did not correlate with explored factors. Other researchers are encouraged to use parasitology collections to continue exploring patterns of parasite biogeography and macroecology.

Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal

Increased human activities caused the isolation of populations in many species-often associated with genetic depletion and negative fitness effects. The effects of isolation are predicted by theory, but long-term data from natural populations are scarce. We show, with full genome sequences, that common voles (Microtus arvalis) in the Orkney archipelago have remained genetically isolated from conspecifics in continental Europe since their introduction by humans over 5,000 years ago. Modern Orkney vole populations are genetically highly differentiated from continental conspecifics as a result of genetic drift processes. Colonization likely started on the biggest Orkney island and vole populations on smaller islands were gradually split off, without signs of secondary admixture. Despite having large modern population sizes, Orkney voles are genetically depauperate and successive introductions to smaller islands resulted in further reduction of genetic diversity. We detected high levels of fixation of predicted deleterious variation compared with continental populations, particularly on smaller islands, yet the fitness effects realized in nature are unknown. Simulations showed that predominantly mildly deleterious mutations were fixed in populations, while highly deleterious mutations were purged early in the history of the Orkney population. Relaxation of selection overall due to benign environmental conditions on the islands and the effects of soft selection may have contributed to the repeated, successful establishment of Orkney voles despite potential fitness loss. Furthermore, the specific life history of these small mammals, resulting in relatively large population sizes, has probably been important for their long-term persistence in full isolation.

Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia

Genomic diversity is a fundamental component of Earth's total biodiversity, and requires explicit consideration in efforts to conserve biodiversity. To conserve genomic diversity, it is necessary to measure its spatial distribution, and quantify the contribution that any intraspecific evolutionary lineages make to overall genomic diversity. Here, we describe the range-wide population genomic structure of a threatened Australian rodent, the black-footed tree-rat (Mesembriomys gouldii), aiming to provide insight into the timing and extent of population declines across a large region with a dearth of long-term monitoring data. By estimating recent trajectories in effective population sizes at four localities, we confirm widespread population decline across the species' range, but find that the population in the peri-urban area of the Darwin region has been more stable. Based on current sampling, the Melville Island population made the greatest contribution to overall allelic richness of the species, and the prioritisation analysis suggested that conservation of the Darwin and Cobourg Peninsula populations would be the most cost-effective scenario to retain more than 90% of all alleles. Our results broadly confirm current sub-specific taxonomy, and provide crucial data on the spatial distribution of genomic diversity to help prioritise limited conservation resources. Along with additional sampling and genomic analysis from the far eastern and western edges of the black-footed tree-rat distribution, we suggest a range of conservation and research priorities that could help improve black-footed tree-rat population trajectories at large and fine spatial scales, including the retention and expansion of structurally complex habitat patches.

Priorities for conserving the world's terrestrial mammals based on over-the-horizon extinction risk

Three major axes of global change put the world's mammal biodiversity at risk: climate change, human population growth, and land-use change.^{1,2,3,4,5,6,7,8,9,10,11,12} In some parts of the world the full effects of these threats on species will only be felt in decades to come, yet conservation emphasizes species currently threatened with extinction, by threats that have already occurred. There have been calls for conservation to become more proactive by anticipating and protecting species that may not yet be threatened, but have a high chance of becoming threatened in the future.^{3,6,8,10,12,13,14} We refer to this as "over-the-horizon" extinction risk, and we identify such species among the world's nonmarine mammals by considering not only the severity of increase in threats faced by each species, but also the way each species' biology confers sensitivity or robustness to threats. We define four future risk factors based on species' biology and projected exposure to severe change in climate, human population, and land use. We regard species with two or more of these risk factors as especially vulnerable to future extinction risk.^{10,15,16,17,18,19} Our models predict that by 2100 up to 1,057 (20%) of nonmarine mammal species will have combinations of two or more future risk factors. These species will be particularly concentrated in two future risk hotspots in sub-Saharan Africa and southern/eastern Australia. Proactively targeting species with over-the-horizon extinction risk could help to future-proof global conservation planning and prevent a new wave of mammal species from becoming threatened with extinction by the end of this century.

Identifying the most effective behavioural assays and predator cues for quantifying anti-predator responses in mammals: a systematic review

BACKGROUND

Mammals, globally, are facing population declines. Protecting and breeding threatened populations inside predator-free havens and translocating them back to the wild is commonly viewed as a solution. These approaches can expose predator-naïve animals to predators they have never encountered and as a result, many conservation projects have failed due to the predation of individuals that lacked appropriate anti-predator responses. Hence, robust ways to measure anti-predator responses are urgently needed to help identify naïve populations at risk, to select appropriate animals for translocation, and to monitor managed populations for changes in anti-predator traits. Here, we undertake a systematic review that collates existing behavioural assays of anti-predator responses and identifies assay types and predator cues that provoke the greatest behavioural responses.

METHODS

We retrieved articles from academic bibliographic databases and grey literature sources (such as government and conservation management reports), using a Boolean search string. Each article was screened against eligibility criteria determined using the PICO (Population-Intervention-Comparator-Outcome) framework. Using data extracted from each article, we mapped all known behavioural assays for quantifying anti-predator responses in mammals and examined the context in which each assay has been implemented (e.g., species tested, predator cue characteristics). Finally, with mixed effects modelling, we determined which of these assays and predator cue types elicit the greatest behavioural responses based on standardised difference in response between treatment and control groups.

REVIEW FINDINGS

We reviewed 5168 articles, 211 of which were eligible, constituting 1016 studies on 126 mammal species, a quarter of which are threatened by invasive species. We identified six major types of behavioural assays: behavioural focals, capture probability, feeding station, flight initiation distance, giving-up density, and stimulus presentations. Across studies, there were five primary behaviours measured: activity, escape, exploration, foraging, and vigilance. These behaviours yielded similar effect sizes across studies. With regard to study design, however, studies that used natural olfactory cues tended to report larger effect sizes than those that used artificial cues. Effect sizes were larger in studies that analysed sexes individually, rather than combining males and females. Studies that used 'blank' control treatments (the absence of a stimulus) rather than a treatment with a control stimulus had higher effect sizes. Although many studies involved repeat measures of known individuals, only 15.4% of these used their data to calculate measures of individual repeatability.

CONCLUSIONS

Our review highlights important aspects of experimental design and reporting that should be considered. Where possible, studies of anti-predator behaviour should use appropriate control treatments, analyse males and females separately, and choose organic predator cues. Studies should also look to report the individual repeatability of behavioural traits, and to correctly identify measures of uncertainty (error bars). The review highlights robust methodology, reveals promising techniques on which to focus future assay development, and collates relevant information for conservation managers.

Anthropogenic changes to the nighttime environment

How the relative impacts of anthropogenic pressures on the natural environment vary between different taxonomic groups, habitats, and geographic regions is increasingly well established. By contrast, the times of day at which those pressures are most forcefully exerted or have greatest influence are not well understood. The impact on the nighttime environment bears particular scrutiny, given that for practical reasons (e.g., researchers themselves belong to a diurnal species), most studies on the impacts of anthropogenic pressures are conducted during the daytime on organisms that are predominantly day active or in ways that do not differentiate between daytime and nighttime. In the present article, we synthesize the current state of knowledge of impacts of anthropogenic pressures on the nighttime environment, highlighting key findings and examples. The evidence available suggests that the nighttime environment is under intense stress across increasing areas of the world, especially from nighttime pollution, climate change, and overexploitation of resources.

Implications of large-scale infrastructure development for biodiversity in Indonesian Borneo

Indonesia is embarking on an ambitious relocation of its capital city to Kalimantan, Borneo, bringing with it major urban and road infrastructure. Yet, despite being one of the world's most biologically diverse regions, the potential implications of this development for wildlife have yet to be fully assessed. We explored the potential impacts of the capital relocation, and road expansion and upgrades to critical habitat for medium-large mammals (>1 kg) using camera trap data from 11 forested landscapes. We applied Bayesian multi-species occupancy models to predict community and species-level responses to anthropogenic and environmental factors. We extrapolated spatial patterns of occupancy and species diversity across the forests of Kalimantan and identified "critical habitats" as the top 20^th percentile of occupancy and species richness values. We subsequently overlapped these critical habitat layers with infrastructure impact zones to estimate the area that could potentially be affected by direct or secondary impacts. At both the community and species-level, distance to primary roads had the strongest negative influence on habitat-use. Occupancy was also influenced by forest quality and multidimensional poverty conditions in adjacent villages, demonstrating the sensitivity of biodiversity to socio-ecological pressures. Less than 1 % of the critical habitat for the threatened mammal community lay within the direct impact zone (30 km radius) of the capital relocation. However, approximately 16 % was located within 200 km and could potentially be affected by uncontrolled secondary impacts such as urban sprawl and associated regional development. The often-overlooked secondary implications of upgrading existing roads could also intersect a large amount of critical habitat for lowland species. Mitigating far-reaching secondary impacts of infrastructure development should be fully incorporated into environmental impact assessments. This will provide Indonesia with an opportunity to set an example of sustainable infrastructure development in the tropics.

Restoration of bighorn sheep: History, successes, and remaining conservation issues

Mammals are imperiled worldwide, primarily from habitat loss or modification, and exhibit downward trends in their populations and distributions. Likewise, large-bodied herbivores have undergone a collapse in numbers and are at the highest extinction risk of all mammals. Bighorn sheep (Ovis canadensis) are among those large-bodied herbivores that possess a slow-paced life history, suffer from debilitating diseases, and have experienced range contractions across their historical distribution since the late 1800s. Translocations and reintroductions of these mountain ungulates are key aspects of restoration and often are used to re-establish populations in historical habitat or to supplement declining herds. Millions of US dollars and much effort by state and federal natural resource agencies, as well as public and private organizations, have been expended to restore bighorn sheep. Despite those efforts, translocated populations of bighorn sheep have not always been successful. We assessed restoration of bighorn sheep to provide insights in the context of conservation of populations of bighorn sheep, because this management tool is a frequently used to re-establish populations. We focused briefly on past efforts to restore bighorn sheep populations and followed with updates on the value of habitat enhancements, genetic issues, the importance of ecotypic or phenotypic adaptations when restoring populations, predation, and disease transmission. We also raised issues and posed questions that have potential to affect future decisions regarding the restoration of bighorn sheep. This information will help conservationists improve the success of conserving these iconic large mammals.

Informing Wildlife Corridor Creation through Population Genetics of an Arboreal Marsupial in a Fragmented Landscape

Habitat loss and fragmentation contribute significantly to the decline of arboreal mammal populations. As populations become fragmented and isolated, a reduction in gene flow can result in a loss of genetic diversity and have an overall impact upon long-term persistence. Creating wildlife corridors can mitigate such effects by increasing the movement and dispersal of animals, thus acting to reduce population isolation. To evaluate the success of a corridor, a before-after experimental research framework can be used. Here, we report the genetic diversity and structure of sugar glider (Petaurus breviceps) sampling locations within a fragmented landscape prior to the implementation of a wildlife corridor. This study used 5999 genome-wide SNPs from 94 sugar gliders caught from 8 locations in a fragmented landscape in south-eastern New South Wales, Australia. Overall genetic structure was limited, and gene flow was detected across the landscape. Our findings indicate that the study area contains one large population. A major highway dissecting the landscape did not act as a significant barrier to dispersal, though this may be because of its relatively new presence in the landscape (completed in 2018). Future studies may yet indicate its long-term impact as a barrier to gene flow. Future work should aim to repeat the methods of this study to examine the medium-to-long-term impacts of the wildlife corridor on sugar gliders, as well as examine the genetic structure of other native, specialist species in the landscape.

Terrestrial food web complexity in Amazonian forests decays with habitat loss

The conversion of natural ecosystems into human-modified landscapes (HMLs) is the main driver of biodiversity loss in terrestrial ecosystems.^1,2,3 Even when species persist within habitat remnants, populations may become so small that ecological interactions are functionally lost, disrupting local interaction networks.^4,5 To uncover the consequences of land use changes toward ecosystem functioning, we need to understand how changes in species richness and abundance in HMLs^6,7,8 rearrange ecological networks. We used data from forest vertebrate surveys and combined modeling and network analysis to investigate how the structure of predator-prey networks was affected by habitat insularization induced by a hydroelectric reservoir in the Brazilian Amazonia.⁹ We found that network complexity, measured by interaction diversity, decayed non-linearly with decreasingly smaller forest area. Although on large forest islands (>100 ha) prey species were linked to 3-4 potential predators, they were linked to one or had no remaining predator on small islands. Using extinction simulations, we show that the variation in network structure cannot be explained by abundance-related extinction risk or prey availability. Our findings show that habitat loss may result in an abrupt disruption of terrestrial predator-prey networks, generating low-complexity ecosystems that may not retain functionality. Release from predation on some small islands may produce cascading effects over plants that accelerate forest degradation, whereas predator spillover on others may result in overexploited prey populations. Our analyses highlight that in addition to maintaining diversity, protecting large continuous forests is required for the persistence of interaction networks and related ecosystem functions.

Composition of terrestrial mammal assemblages and their habitat use in unflooded and flooded blackwater forests in the Central Amazon

Several forest types compose the apparently homogenous forest landscape of the lowland Amazon. The seasonally flooded forests (igapós) of the narrow floodplains of the blackwater rivers of the Amazon basin support their community of animals; however, these animals are required to adapt to survive in this environment. Furthermore, several taxa are an important source of seasonal resources for the animals in the adjacent unflooded forest (terra firme). During the low-water phase, the igapó becomes available to terrestrial species that make use of terra firme and igapó forests. Nonetheless, these lateral movements of terrestrial mammals between hydrologically distinct forest types remain poorly understood. This study tested the hypothesis that the attributes of the assemblages (abundance, richness, evenness, and functional groups) of the terrestrial mammals in both these forest types of the Cuieiras River basin, which is located in the Central Amazon, are distinct and arise from the ecological heterogeneity induced by seasonal floods. After a sampling effort of 10,743 camera trap days over four campaigns, two for the terra firme (6,013 trap days) and two for the igapó forests (4,730 trap days), a total of 31 mammal species (five were considered eventual) were recorded in both forest types. The species richness was similar in the igapó and terra firme forests, and the species abundance and biomass were greater in the terra firme forest, which were probably due to its higher primary productivity; whereas the evenness was increased in the igapós when compared to the terra firme forest. Although both forest types shared 84% of the species, generally a marked difference was observed in the composition of the terrestrial mammal species. These differences were associated with abundances of some specific functional groups, i.e., frugivores/granivores. Within-group variation was explained by balanced variation in abundance and turnover, which the individuals of a given species at one site were substituted by an equivalent number of individuals of a different species at another site. However, the occupancy was similar between both forest types for some groups such as carnivores. These findings indicate that seasonal flooding is a relevant factor in structuring the composition of terrestrial mammal assemblages between terra firme and floodplain forests, even in nutrient-poor habitats such as igapós. The results also highlight the importance of maintaining the mosaic of natural habitats on the scale of the entire landscape, with major drainage basins representing management units that provide sufficiently large areas to support a range of ecological processes (e.g., nutrient transport, lateral movements and the persistence of apex predators).