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Çiçek SS, Mangoni A, Hanschen FS, Agerbirk N, Zidorn C. Essentials in the acquisition, interpretation, and reporting of plant metabolite profiles. PHYTOCHEMISTRY 2024; 220:114004. [PMID: 38331135 DOI: 10.1016/j.phytochem.2024.114004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/10/2024]
Abstract
Plant metabolite profiling reveals the diversity of secondary or specialized metabolites in the plant kingdom with its hundreds of thousands of species. Specialized plant metabolites constitute a vast class of chemicals posing significant challenges in analytical chemistry. In order to be of maximum scientific relevance, reports dealing with these compounds and their source species must be transparent, make use of standards and reference materials, and be based on correctly and traceably identified plant material. Essential aspects in qualitative plant metabolite profiling include: (i) critical review of previous literature and a reasoned sampling strategy; (ii) transparent plant sampling with wild material documented by vouchers in public herbaria and, optimally, seed banks; (iii) if possible, inclusion of generally available reference plant material; (iv) transparent, documented state-of-the art chemical analysis, ideally including chemical reference standards; (v) testing for artefacts during preparative extraction and isolation, using gentle analytical methods; (vi) careful chemical data interpretation, avoiding over- and misinterpretation and taking into account phytochemical complexity when assigning identification confidence levels, and (vii) taking all previous scientific knowledge into account in reporting the scientific data. From the current stage of the phytochemical literature, selected comments and suggestions are given. In the past, proposed revisions of botanical taxonomy were sometimes based on metabolite profiles, but this approach ("chemosystematics" or "chemotaxonomy") is outdated due to the advent of DNA sequence-based phylogenies. In contrast, systematic comparisons of plant metabolite profiles in a known phylogenetic framework remain relevant. This approach, known as chemophenetics, allows characterizing species and clades based on their array of specialized metabolites, aids in deducing the evolution of biosynthetic pathways and coevolution, and can serve in identifying new sources of rare and economically interesting natural products.
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Affiliation(s)
- Serhat S Çiçek
- Department of Biotechnology, Hamburg University of Applied Sciences, Ulmenliet 20, 21033, Hamburg, Germany
| | - Alfonso Mangoni
- Dipartimento di Farmacia, Università di Napoli Federico II, Via Domenico Montesano 49, 80131, Napoli, Italy
| | - Franziska S Hanschen
- Plant Quality and Food Security, Leibniz Institute of Vegetable and Ornamental Crops (IGZ) e. V., Theodor-Echtermeyer-Weg 1, 14979, Grossbeeren, Germany
| | - Niels Agerbirk
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg, Denmark
| | - Christian Zidorn
- Pharmazeutisches Institut, Abteilung Pharmazeutische Biologie, Christian-Albrechts- Universität zu Kiel, Gutenbergstraße 76, 24118, Kiel, Germany.
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2
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Lingam M. Information Transmission via Molecular Communication in Astrobiological Environments. ASTROBIOLOGY 2024; 24:84-99. [PMID: 38109216 DOI: 10.1089/ast.2023.0069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2023]
Abstract
The ubiquity of information transmission via molecular communication between cells is comprehensively documented on Earth; this phenomenon might even have played a vital role in the origin(s) and early evolution of life. Motivated by these considerations, a simple model for molecular communication entailing the diffusion of signaling molecules from transmitter to receiver is elucidated. The channel capacity C (maximal rate of information transmission) and an optimistic heuristic estimate of the actual information transmission rate ℐ are derived for this communication system; the two quantities, especially the latter, are demonstrated to be broadly consistent with laboratory experiments and more sophisticated theoretical models. The channel capacity exhibits a potentially weak dependence on environmental parameters, whereas the actual information transmission rate may scale with the intercellular distance d as ℐ ∝ d-4 and could vary substantially across settings. These two variables are roughly calculated for diverse astrobiological environments, ranging from Earth's upper oceans (C ∼ 3.1 × 103 bits/s; ℐ ∼ 4.7 × 10-2 bits/s) and deep sea hydrothermal vents (C ∼ 4.2 × 103 bits/s; ℐ ∼ 1.2 × 10-1 bits/s) to the hydrocarbon lakes and seas of Titan (C ∼ 3.8 × 103 bits/s; ℐ ∼ 2.6 × 10-1 bits/s).
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Affiliation(s)
- Manasvi Lingam
- Department of Aerospace, Physics and Space Sciences, Florida Institute of Technology, Melbourne, Florida, USA
- Department of Physics, The University of Texas at Austin, Austin, Texas, USA
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3
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Luo SH, Hua J, Liu Y, Li SH. The Chemical Ecology of Plant Natural Products. PROGRESS IN THE CHEMISTRY OF ORGANIC NATURAL PRODUCTS 2024; 124:57-183. [PMID: 39101984 DOI: 10.1007/978-3-031-59567-7_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/06/2024]
Abstract
Plants are excellent chemists with an impressive capability of biosynthesizing a large variety of natural products (also known as secondary or specialized metabolites) to resist various biotic and abiotic stresses. In this chapter, 989 plant natural products and their ecological functions in plant-herbivore, plant-microorganism, and plant-plant interactions are reviewed. These compounds include terpenoids, phenols, alkaloids, and other structural types. Terpenoids usually provide direct or indirect defense functions for plants, while phenolic compounds play important roles in regulating the interactions between plants and other organisms. Alkaloids are frequently toxic to herbivores and microorganisms, and can therefore also provide defense functions. The information presented should provide the basis for in-depth research of these plant natural products and their natural functions, and also for their further development and utilization.
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Affiliation(s)
- Shi-Hong Luo
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Lanhei Road 132, Panlong District, Kunming, 650201, Yunnan Province, P. R. China
| | - Juan Hua
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Dongling Road 120, Shenhe District, Shenyang, 110866, Liaoning Province, P. R. China
| | - Yan Liu
- Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, LiuTai Avenue 1166, Wenjiang District, Chengdu, 611137, Sichuan Province, P. R. China.
| | - Sheng-Hong Li
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Lanhei Road 132, Panlong District, Kunming, 650201, Yunnan Province, P. R. China.
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4
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Zhu M, Anirudhan V, Du R, Rong L, Cui Q. Influenza virus cell entry and targeted antiviral development. J Med Virol 2023; 95:e29181. [PMID: 37930075 DOI: 10.1002/jmv.29181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 10/08/2023] [Accepted: 10/09/2023] [Indexed: 11/07/2023]
Abstract
Influenza virus infection is currently one of the most prevalent and transmissible diseases in the world causing local outbreaks every year. It has the potential to cause devastating global pandemics as well. The development of anti-influenza drugs possessing novel mechanisms of action is urgently needed to control the spread of influenza infections; thus, drugs that inhibit influenza virus entry into target cells are emerging as a hot research topic. In addition to discussing the biological significance of hemagglutinin in viral replication, this article provides recent updates on the natural products, small molecules, proteins, peptides, and neutralizing antibody-like proteins that have anti-influenza potency.
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Affiliation(s)
- Murong Zhu
- Innovative Institute of Chinese Medicine and Pharmacy, Shandong University of Traditional Chinese Medicine, Jinan, China
| | - Varada Anirudhan
- Department of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, IL, USA
| | - Ruikun Du
- Innovative Institute of Chinese Medicine and Pharmacy, Shandong University of Traditional Chinese Medicine, Jinan, China
- Qingdao Academy of Chinese Medical Sciences, Shandong University of Traditional Chinese Medicine, Qingdao, China
| | - Lijun Rong
- Department of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, IL, USA
| | - Qinghua Cui
- Innovative Institute of Chinese Medicine and Pharmacy, Shandong University of Traditional Chinese Medicine, Jinan, China
- Qingdao Academy of Chinese Medical Sciences, Shandong University of Traditional Chinese Medicine, Qingdao, China
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5
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Singh C, Sharma P, Ahmed M, Kumar D, Sharma YB, Samanta J, Ahmed Z, Shukla SK, Hazra A, Bharitkar YP. Semisynthesis of Novel Dispiro-pyrrolizidino/thiopyrrolizidino-oxindolo/indanedione Natural Product Hybrids of Parthenin Followed by Their Cytotoxicity Evaluation. ACS OMEGA 2023; 8:35283-35294. [PMID: 37779957 PMCID: PMC10536096 DOI: 10.1021/acsomega.3c05020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 09/05/2023] [Indexed: 10/03/2023]
Abstract
Natural products possess unique and broader intricacies in the chemical space and have been essential for drug discovery. The crucial factor for drug discovery success is not the size of the library but rather its structural diversity. Although reports on the number of new structurally diverse natural products (NPs) have declined recently, researchers follow the next logical step: synthesizing natural product hybrids and their analogues using the most potent tool, diversity-oriented synthesis (DOS). Here, we use weed Parthenium hysterophorus as a source of parthenin for synthesis of novel dispiro-pyrrolizidino/thiopyrrolizidino-oxindolo/indanedione natural product hybrids of parthenin via chemo-, regio-, and stereoselective azomethine ylide cycloaddition. All synthesized compounds were characterized through a detailed analysis of one-dimensional (1D) and two-dimensional (2D) NMR and HRMS data, and the stereochemistries of the compounds were confirmed by X-ray diffraction analysis. All compounds were evaluated for their cytotoxicity against four cell lines (HCT-116, A549, Mia-Paca-2, and MCF-7), and compound 6 inhibited the HCT-116 cells with an IC50 of 5.0 ± 0.08 μM.
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Affiliation(s)
- Chetan
Paul Singh
- CSIR-Indian
Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
- Academy
of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Priyanka Sharma
- National
Institute of Pharmaceutical Education and Research (NIPER), Chunilal Bhawan, 168, Maniktala
Main Road, Kolkata 700054, India
| | - Manzoor Ahmed
- CSIR-Indian
Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
- Academy
of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Diljeet Kumar
- CSIR-Indian
Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
- Academy
of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Yogesh Brijwashi Sharma
- National
Institute of Pharmaceutical Education and Research (NIPER), Chunilal Bhawan, 168, Maniktala
Main Road, Kolkata 700054, India
| | - Jayanta Samanta
- Department
of Chemistry, SRM Institute of Science and
Technology, Kattankulathur 603 203, Tamil Nadu, India
| | - Zabeer Ahmed
- CSIR-Indian
Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
- Academy
of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Sanket Kumar Shukla
- CSIR-Indian
Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
- Academy
of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Abhijit Hazra
- National
Institute of Pharmaceutical Education and Research (NIPER), Chunilal Bhawan, 168, Maniktala
Main Road, Kolkata 700054, India
| | - Yogesh P. Bharitkar
- CSIR-Indian
Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
- Academy
of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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6
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Wang X, Yan G, Liu W, Chen H, Yuan Q, Wang Z, Liu H. Endophytic Beauveria bassiana of Tomato Resisted the Damage from Whitefly Bemisia tabaci by Mediating the Accumulation of Plant-Specialized Metabolites. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:13244-13254. [PMID: 37646319 PMCID: PMC10510379 DOI: 10.1021/acs.jafc.3c03679] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 08/16/2023] [Accepted: 08/22/2023] [Indexed: 09/01/2023]
Abstract
Beauveria bassiana acts as an endophytic fungus that controls herbivorous pests by stimulating plant defenses and inducing systemic resistance. Through multiomics analysis, 325 differential metabolites and 1739 differential expressed genes were observed in tomatoes treated with B. bassiana by root irrigation; meanwhile, 152 differential metabolites and 1002 differential genes were observed in tomatoes treated by local leaf spraying. Among the upregulated metabolites were α-solanine, 5-O-caffeoylshikimic acid, clerodendrin A, and peucedanin, which demonstrated anti-insect activity. These differential metabolites were primarily associated with alkaloid biosynthesis, flavonoid biosynthesis, and tryptophan metabolism pathways. Furthermore, the gene silencing of UDP-glucose:sterol glucosyltransferase, a gene involved in α-solanine synthesis, indicated that B. bassiana could inhibit the reproduction of whiteflies by regulating α-solanine. This study highlighted the ability of B. bassiana to modulate plant secondary metabolites and emphasized the significance of understanding and harnessing multitrophic interactions of endophytic B. bassiana for sustainable agriculture.
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Affiliation(s)
- Xian Wang
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Ganwei Yan
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Wenjie Liu
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Haolin Chen
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Qian Yuan
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Ziying Wang
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
| | - Huai Liu
- Key Laboratory of Agricultural Biosafety
and Green Production of Upper Yangtze River, Key Laboratory of Entomology
and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, People’s Republic of China
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7
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Anderson JC. Ill Communication: Host Metabolites as Virulence-Regulating Signals for Plant-Pathogenic Bacteria. ANNUAL REVIEW OF PHYTOPATHOLOGY 2023; 61:49-71. [PMID: 37253693 DOI: 10.1146/annurev-phyto-021621-114026] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Plant bacterial pathogens rely on host-derived signals to coordinate the deployment of virulence factors required for infection. In this review, I describe how diverse plant-pathogenic bacteria detect and respond to plant-derived metabolic signals for the purpose of virulence gene regulation. I highlight examples of how pathogens perceive host metabolites through membrane-localized receptors as well as intracellular response mechanisms. Furthermore, I describe how individual strains may coordinate their virulence using multiple distinct host metabolic signals, and how plant signals may positively or negatively regulate virulence responses. I also describe how plant defenses may interfere with the perception of host metabolites as a means to dampen pathogen virulence. The emerging picture is that recognition of host metabolic signals for the purpose of virulence gene regulation represents an important primary layer of interaction between pathogenic bacteria and host plants that shapes infection outcomes.
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Affiliation(s)
- Jeffrey C Anderson
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA;
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8
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Delbrouck JA, Desgagné M, Comeau C, Bouarab K, Malouin F, Boudreault PL. The Therapeutic Value of Solanum Steroidal (Glyco)Alkaloids: A 10-Year Comprehensive Review. Molecules 2023; 28:4957. [PMID: 37446619 DOI: 10.3390/molecules28134957] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/20/2023] [Accepted: 06/21/2023] [Indexed: 07/15/2023] Open
Abstract
Steroidal (glycol)alkaloids S(G)As are secondary metabolites made of a nitrogen-containing steroidal skeleton linked to a (poly)saccharide, naturally occurring in the members of the Solanaceae and Liliaceae plant families. The genus Solanum is familiar to all of us as a food source (tomato, potato, eggplant), but a few populations have also made it part of their ethnobotany for their medicinal properties. The recent development of the isolation, purification and analysis techniques have shed light on the structural diversity among the SGAs family, thus attracting scientists to investigate their various pharmacological properties. This review aims to overview the recent literature (2012-2022) on the pharmacological benefits displayed by the SGAs family. Over 17 different potential therapeutic applications (antibiotic, antiviral, anti-inflammatory, etc.) were reported over the past ten years, and this unique review analyzes each pharmacological effect independently without discrimination of either the SGA's chemical identity or their sources. A strong emphasis is placed on the discovery of their biological targets and the subsequent cellular mechanisms, discussing in vitro to in vivo biological data. The therapeutic value and the challenges of the solanum steroidal glycoalkaloid family is debated to provide new insights for future research towards clinical development.
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Affiliation(s)
- Julien A Delbrouck
- Institut de Pharmacologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, 3001 12e Avenue Nord, Sherbrooke, QC J1H 5N4, Canada
| | - Michael Desgagné
- Institut de Pharmacologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, 3001 12e Avenue Nord, Sherbrooke, QC J1H 5N4, Canada
| | - Christian Comeau
- Institut de Pharmacologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, 3001 12e Avenue Nord, Sherbrooke, QC J1H 5N4, Canada
| | - Kamal Bouarab
- Centre SEVE, Département de Biologie, Faculté des Sciences, Université de Sherbrooke, 2500 Boul de l'Université, Sherbrooke, QC J1K 2R1, Canada
| | - François Malouin
- Département de Biologie, Faculté des Sciences, Université de Sherbrooke, 2500 Boul de l'Université, Sherbrooke, QC J1K 2R1, Canada
| | - Pierre-Luc Boudreault
- Institut de Pharmacologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, 3001 12e Avenue Nord, Sherbrooke, QC J1H 5N4, Canada
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9
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Mattedi A, Sabbi E, Farda B, Djebaili R, Mitra D, Ercole C, Cacchio P, Del Gallo M, Pellegrini M. Solid-State Fermentation: Applications and Future Perspectives for Biostimulant and Biopesticides Production. Microorganisms 2023; 11:1408. [PMID: 37374910 PMCID: PMC10304952 DOI: 10.3390/microorganisms11061408] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 05/19/2023] [Accepted: 05/24/2023] [Indexed: 06/29/2023] Open
Abstract
With the expansion of the green products market and the worldwide policies and strategies directed toward a green revolution and ecological transition, the demand for innovative approaches is always on the rise. Among the sustainable agricultural approaches, microbial-based products are emerging over time as effective and feasible alternatives to agrochemicals. However, the production, formulation, and commercialization of some products can be challenging. Among the main challenges are the industrial production processes that ensure the quality of the product and its cost on the market. In the context of a circular economy, solid-state fermentation (SSF) might represent a smart approach to obtaining valuable products from waste and by-products. SSF enables the growth of various microorganisms on solid surfaces in the absence or near absence of free-flowing water. It is a valuable and practical method and is used in the food, pharmaceutical, energy, and chemical industries. Nevertheless, the application of this technology in the production of formulations useful in agriculture is still limited. This review summarizes the literature dealing with SSF agricultural applications and the future perspective of its use in sustainable agriculture. The survey showed good potential for SSF to produce biostimulants and biopesticides useful in agriculture.
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Affiliation(s)
- Alessandro Mattedi
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Enrico Sabbi
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Beatrice Farda
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Rihab Djebaili
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Debasis Mitra
- Department of Microbiology, Raiganj University, Raiganj 733134, India;
| | - Claudia Ercole
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Paola Cacchio
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Maddalena Del Gallo
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
| | - Marika Pellegrini
- Department of Life, Health and Environmental Sciences, University of L’Aquila, Via Vetoio, Coppito, 67100 L’Aquila, Italy; (A.M.); (E.S.); (B.F.); (R.D.); (C.E.); (P.C.); (M.D.G.)
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10
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Zhang Z, Jin S, Tian H, Wang Z, Jiang R, Liu C, Xin D, Wu X, Chen Q, Zhu R. Identifying the Soybean microRNAs Related to Phytophthora sojae Based on RNA Sequencing and Bioinformatics Analysis. Int J Mol Sci 2023; 24:ijms24108546. [PMID: 37239903 DOI: 10.3390/ijms24108546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Revised: 05/05/2023] [Accepted: 05/08/2023] [Indexed: 05/28/2023] Open
Abstract
Phytophthora root rot in soybeans is caused by a pathogen called Phytophthora sojae (P. sojae), which results in a significant decrease in soybean production within affected regions. MicroRNAs (miRNAs) are a class of small non-coding RNA molecules that play a key post-transcriptional regulatory role in eukaryotes. In this paper, the miRNAs that respond to P. sojae were analyzed from the gene level to complement the study of molecular resistance mechanisms in soybean. The study utilized high-throughput sequencing of soybean data to predict miRNAs that respond to P. sojae, analyze their specific functions, and verify regulatory relationships using qRT-PCR. The results showed that the miRNAs in soybean respond to P. sojae infection. MiRNAs can be transcribed independently, suggesting the presence of transcription factor binding sites in the promoter regions. Additionally, we performed an evolutionary analysis on conserved miRNAs that respond to P. sojae. Finally, we investigated the regulatory relationships among miRNAs, genes, and transcription factors, and identified five regulatory patterns. These findings lay the groundwork for future studies on the evolution of miRNAs responsive to P. sojae.
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Affiliation(s)
- Zhanguo Zhang
- College of Arts and Sciences, Northeast Agricultural University, Harbin 150030, China
- National Research Center of Soybean Engineering and Technology, Harbin 150030, China
| | - Song Jin
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Huilin Tian
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Zhihao Wang
- College of Life Sciences, Northeast Agricultural University, Harbin 150030, China
| | - Rui Jiang
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Chunyan Liu
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Dawei Xin
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Xiaoxia Wu
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Qingshan Chen
- College of Agriculture, Northeast Agricultural University, Harbin 150030, China
| | - Rongsheng Zhu
- College of Arts and Sciences, Northeast Agricultural University, Harbin 150030, China
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11
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Xu H, Zhang W, Zhou Y, Yue Z, Yan T, Zhang Y, Liu Y, Hong Y, Liu S, Zhu F, Tao L. Systematic Description of the Content Variation of Natural Products (NPs): To Prompt the Yield of High-Value NPs and the Discovery of New Therapeutics. J Chem Inf Model 2023; 63:1615-1625. [PMID: 36795011 DOI: 10.1021/acs.jcim.2c01459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Abstract
Natural products (NPs) have long been associated with human production and play a key role in the survival of species. Significant variations in NP content may severely affect the "return on investment" of NP-based industries and render ecological systems vulnerable. Thus, it is crucial to construct a platform that relates variations in NP content to their corresponding mechanisms. In this study, a publicly accessible online platform, NPcVar (http://npcvar.idrblab.net/), was developed, which systematically described the variations of NP contents and their corresponding mechanisms. The platform comprises 2201 NPs and 694 biological resources, including plants, bacteria, and fungi, curated using 126 diverse factors with 26,425 records. Each record contains information about the species, NP, and factors involved, as well as NP content data, parts of the plant that produce NPs, the location of the experiment, and reference information. All factors were manually curated and categorized into 42 classes which belong to four mechanisms (molecular regulation, species factor, environmental condition, and combined factor). Additionally, the cross-links of species and NP to well-established databases and the visualization of NP content under various experimental conditions were provided. In conclusion, NPcVar is a valuable resource for understanding the relationship between species, factors, and NP contents and is anticipated to serve as a promising tool for improving the yield of high-value NPs and facilitating the development of new therapeutics.
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Affiliation(s)
- Hongquan Xu
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Wei Zhang
- The Second Affiliated Hospital, Zhejiang University School of Medicine, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, China.,Innovation Institute for Affiliated Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou 330110, China
| | - Ying Zhou
- State Key Laboratory for Diagnosis and Treatment of Infectious Disease, The First Affiliated Hospital, Zhejiang University, Hangzhou 310000, China
| | - Zixuan Yue
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Tianci Yan
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Yuanyuan Zhang
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Yuhong Liu
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Yanfeng Hong
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Shuiping Liu
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
| | - Feng Zhu
- The Second Affiliated Hospital, Zhejiang University School of Medicine, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, China.,Innovation Institute for Affiliated Intelligence in Medicine of Zhejiang University, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou 330110, China
| | - Lin Tao
- Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, School of Pharmacy, Hangzhou Normal University, Hangzhou 311121, China
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12
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Sharma I, Kashyap S, Agarwala N. Biotic stress-induced changes in root exudation confer plant stress tolerance by altering rhizospheric microbial community. FRONTIERS IN PLANT SCIENCE 2023; 14:1132824. [PMID: 36968415 PMCID: PMC10036841 DOI: 10.3389/fpls.2023.1132824] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Accepted: 01/31/2023] [Indexed: 06/18/2023]
Abstract
Every organism on the earth maintains some kind of interaction with its neighbours. As plants are sessile, they sense the varied above-ground and below-ground environmental stimuli and decipher these dialogues to the below-ground microbes and neighbouring plants via root exudates as chemical signals resulting in the modulation of the rhizospheric microbial community. The composition of root exudates depends upon the host genotype, environmental cues, and interaction of plants with other biotic factors. Crosstalk of plants with biotic agents such as herbivores, microbes, and neighbouring plants can change host plant root exudate composition, which may permit either positive or negative interactions to generate a battlefield in the rhizosphere. Compatible microbes utilize the plant carbon sources as their organic nutrients and show robust co-evolutionary changes in changing circumstances. In this review, we have mainly focused on the different biotic factors responsible for the synthesis of alternative root exudate composition leading to the modulation of rhizosphere microbiota. Understanding the stress-induced root exudate composition and resulting change in microbial community can help us to devise strategies in engineering plant microbiomes to enhance plant adaptive capabilities in a stressful environment.
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13
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Beimforde C, Schmidt AR, Tuovila H, Kaulfuss U, Germer J, Lee WG, Rikkinen J. Chaenothecopsis (Mycocaliciales, Ascomycota) from exudates of endemic New Zealand Podocarpaceae. MycoKeys 2023; 95:101-129. [DOI: 10.3897/mycokeys.95.97601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 01/26/2023] [Indexed: 02/18/2023] Open
Abstract
The order Mycocaliciales (Ascomycota) comprises fungal species with diverse, often highly specialized substrate ecologies. Particularly within the genus Chaenothecopsis, many species exclusively occur on fresh and solidified resins or other exudates of vascular plants. In New Zealand, the only previously known species growing on plant exudate is Chaenothecopsis schefflerae, found on several endemic angiosperms in the family Araliaceae. Here we describe three new species; Chaenothecopsis matai Rikkinen, Beimforde, Tuovila & A.R. Schmidt, C. nodosa Beimforde, Tuovila, Rikkinen & A.R. Schmidt, and C. novae-zelandiae Rikkinen, Beimforde, Tuovila & A.R. Schmidt, all growing on exudates of endemic New Zealand conifers of the Podocarpaceae family, particularly on Prumnopitys taxifolia. Phylogenetic analyses based on ribosomal DNA regions (ITS and LSU) grouped them into a distinct, monophyletic clade. This, as well as the restricted host range, suggests that all three taxa are endemic to New Zealand. Copious insect frass between the ascomata contain ascospores or show an early stage of ascomata development, indicating that the fungi are spread by insects. The three new species represent the first evidence of Chaenothecopsis from any Podocarpaceae species and the first from any gymnosperm exudates in New Zealand.
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14
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Xu J, Hu Z, He H, Ou X, Yang Y, Xiao C, Yang C, Li L, Jiang W, Zhou T. Transcriptome analysis reveals that jasmonic acid biosynthesis and signaling is associated with the biosynthesis of asperosaponin VI in Dipsacus asperoides. FRONTIERS IN PLANT SCIENCE 2022; 13:1022075. [PMID: 36798802 PMCID: PMC9928152 DOI: 10.3389/fpls.2022.1022075] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 12/01/2022] [Indexed: 05/27/2023]
Abstract
Dipsacus asperoides is a perennial herb, the roots of which are abundant in asperosaponin VI, which has important medicinal value. However, the molecular mechanism underlying the biosynthesis of asperosaponin VI in D. asperoides remains unclear. In present study, a comprehensive investigation of asperosaponin VI biosynthesis was conducted at the levels of metabolite and transcript during root development. The content of asperosaponin VI was significantly accumulated in two-leaf stage roots, and the spatial distribution of asperosaponin VI was localized in the xylem. The concentration of asperosaponin VI gradually increased in the root with the development process. Transcriptome analysis revealed 3916 unique differentially expressed genes (DEGs) including 146 transcription factors (TFs) during root development in D. asperoides. In addition, α-linolenic acid metabolism, jasmonic acid (JA) biosynthesis, JA signal transduction, sesquiterpenoid and triterpenoid biosynthesis, and terpenoid backbone biosynthesis were prominently enriched. Furthermore, the concentration of JA gradually increased, and genes involved in α-linolenic acid metabolism, JA biosynthesis, and triterpenoid biosynthesis were up-regulated during root development. Moreover, the concentration of asperosaponin VI was increased following methyl jasmonate (MeJA) treatment by activating the expression of genes in the triterpenoid biosynthesis pathway, including acetyl-CoA acetyltransferase (DaAACT), 3-hydroxy-3-methylglutaryl coenzyme A synthase (DaHMGCS), 3-hydroxy-3-methylglutaryl coenzyme-A reductase (DaHMGCR). We speculate that JA biosynthesis and signaling regulates the expression of triterpenoid biosynthetic genes and facilitate the biosynthesis of asperosaponin VI. The results suggest a regulatory network wherein triterpenoids, JA, and TFs co-modulate the biosynthesis of asperosaponin VI in D. asperoides.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Tao Zhou
- Resource Institute for Chinese Medicine and Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine, Guiyang, China
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15
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Yoshida Y, Nosaka-T M, Yoshikawa T, Sato Y. Measurements of Antibacterial Activity of Seed Crude Extracts in Cultivated Rice and Wild Oryza Species. RICE (NEW YORK, N.Y.) 2022; 15:63. [PMID: 36513947 PMCID: PMC9748026 DOI: 10.1186/s12284-022-00610-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Seeds are continuously exposed to a wide variety of microorganisms in the soil. In addition, seeds contain large amounts of carbon and nitrogen sources that support initial growth after germination. Thus, seeds in the soil can easily promote microbial growth, and seeds are susceptible to decay. Therefore, seed defense against microorganisms is important for plant survival. Seed-microbe interactions are also important issues from the perspective of food production, in seed quality and shelf life. However, seed-microbe interactions remain largely unexplored. In this study, we established a simple and rapid assay system for the antibacterial activity of rice seed crude extracts by colorimetric quantification methods by the reduction of tetrazolium compound. Using this experimental system, the diversity of effects of rice seed extracts on microbial growth was analyzed using Escherichia coli as a bacterial model. We used collections of cultivated rice, comprising 50 accessions of Japanese landraces, 52 accessions of world rice core collections, and of 30 wild Oryza accessions. Furthermore, we attempted to find genetic factors responsible for the diversity by genome-wide association analysis. Our results demonstrate that this experimental system can easily analyze the effects of seed extracts on bacterial growth. It also suggests that there are various compounds in rice seeds that affect microbial growth. Overall, this experimental system can be used to clarify the chemical entities and genetic control of seed-microbe interactions and will open the door for understanding the diverse seed-microbe interactions through metabolites.
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Affiliation(s)
| | - Misuzu Nosaka-T
- National Institute of Genetics, Shizuoka, Japan
- Department of Genetics, School of Life Science, Sokendai (Graduate University for Advanced Studies), Shizuoka, Japan
| | - Takanori Yoshikawa
- Graduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan
| | - Yutaka Sato
- National Institute of Genetics, Shizuoka, Japan.
- Department of Genetics, School of Life Science, Sokendai (Graduate University for Advanced Studies), Shizuoka, Japan.
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16
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Wang H, Wang Y, Kang C, Wang S, Zhang Y, Yang G, Zhou L, Xiang Z, Huang L, Liu D, Guo L. Drought stress modifies the community structure of root-associated microbes that improve Atractylodes lancea growth and medicinal compound accumulation. FRONTIERS IN PLANT SCIENCE 2022; 13:1032480. [PMID: 36531372 PMCID: PMC9756954 DOI: 10.3389/fpls.2022.1032480] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 11/11/2022] [Indexed: 06/17/2023]
Abstract
Atractylodes lancea is an important medicinal plant in traditional Chinese medicine, its rhizome is rich of volatile secondary metabolites with medicinal values and is largely demanded in modern markets. Currently, supply of high-yield, high-quality A. lancea is mainly achieved via cultivation. Certain soil microbes can benefit plant growth, secondary metabolism and induce resistance to environmental stresses. Hence, studies on the effects of soil microbe communities and isolates microorganisms on A. lancea is extremely meaningful for future application of microbes on cultivation. Here we investigated the effects of the inoculation with an entire soil microbial community on the growth, resistance to drought, and accumulation of major medicinal compounds (hinesol, β-eudesmol, atractylon and atractylodin) of A. lancea. We analyzed the interaction between A. lancea and the soil microbes at the phylum and genus levels under drought stress of different severities (inflicted by 0%, 10% and 25% PEG6000 treatments). Our results showed that inoculation with soil microbes promoted the growth, root biomass yield, medicinal compound accumulation, and rendered drought-resistant traits of A. lancea, including relatively high root:shoot ratio and high root water content under drought. Moreover, our results suggested drought stress was more powerful than the selectivity of A. lancea in shaping the root-associated microbial communities; also, the fungal communities had a stronger role than the bacterial communities in protecting A. lancea from drought. Specific microbial clades that might have a role in protecting A. lancea from drought stress were identified: at the genus level, the rhizospheric bacteria Bacillus, Dylla and Actinomadura, and rhizospheric fungi Chaetomium, Acrophialophora, Trichoderma and Thielava, the root endophytic bacteria Burkholderia-Caballeronia-Paraburkholderia, Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, Dylla and Actinomadura, and the root endophytic fungus Fusarium were closely associated with A. lancea under drought stress. Additionally, we acquired several endophytic Paenibacillus, Paraburkholderia and Fusarium strains and verified they had differential promoting effects on the medicinal compound accumulation in A. lancea root. This study reports the interaction between A. lancea and soil microbe communities under drought stress, and provides insights for improving the outcomes in A. lancea farming via applying microbe inoculation.
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Affiliation(s)
- Hongyang Wang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Yuefeng Wang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Chuanzhi Kang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Sheng Wang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Yan Zhang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Guang Yang
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Li Zhou
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Zengxu Xiang
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Luqi Huang
- Chinese Academy of Chinese Medical Sciences, Beijing, China
| | - Dahui Liu
- Pharmacy Faculty, Hubei University of Chinese Medicine, Wuhan, China
| | - Lanping Guo
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- Key Laboratory of Biology and Cultivation of Herb Medicine, Ministry of Agriculture and Rural Affairs, Beijing, China
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17
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Moon TS. SynMADE: synthetic microbiota across diverse ecosystems. Trends Biotechnol 2022; 40:1405-1414. [PMID: 36117027 DOI: 10.1016/j.tibtech.2022.08.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 08/12/2022] [Accepted: 08/22/2022] [Indexed: 01/21/2023]
Abstract
The past two decades have witnessed rapid advances in engineering individual microbial strains to produce biochemicals and biomaterials. However, engineering microbial consortia has been relatively slow. Using systems and synthetic biology approaches, researchers have been developing tools for engineering complex microbiota. In this opinion article, I discuss future directions and visions regarding developing microbiota as a biomanufacturing host. Specifically, I propose that we can develop the soil microbial community itself as a huge bioreactor. Ultimately, researchers will provide a generalizable system that enables us to understand a microbial consortium's interaction and metabolism on diverse temporal and spatial scales to address global problems, including the climate crisis, food inequality, the issue of waste, and sustainable bioproduction.
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Affiliation(s)
- Tae Seok Moon
- Department of Energy, Environmental and Chemical Engineering, Division of Biology and Biomedical Sciences, Washington University in St Louis, St Louis, MO 63130, USA.
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18
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The Arabidopsis thaliana–Streptomyces Interaction Is Controlled by the Metabolic Status of the Holobiont. Int J Mol Sci 2022; 23:ijms232112952. [PMID: 36361736 PMCID: PMC9655247 DOI: 10.3390/ijms232112952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/20/2022] [Accepted: 10/21/2022] [Indexed: 11/26/2022] Open
Abstract
How specific interactions between plant and pathogenic, commensal, or mutualistic microorganisms are mediated and how bacteria are selected by a plant are important questions to address. Here, an Arabidopsis thaliana mutant called chs5 partially deficient in the biogenesis of isoprenoid precursors was shown to extend its metabolic remodeling to phenylpropanoids and lipids in addition to carotenoids, chlorophylls, and terpenoids. Such a metabolic profile was concomitant to increased colonization of the phyllosphere by the pathogenic strain Pseudomonas syringae pv. tomato DC3000. A thorough microbiome analysis by 16S sequencing revealed that Streptomyces had a reduced colonization potential in chs5. This study revealed that the bacteria–Arabidopsis interaction implies molecular processes impaired in the chs5 mutant. Interestingly, our results revealed that the metabolic status of A. thaliana was crucial for the specific recruitment of Streptomyces into the microbiota. More generally, this study highlights specific as well as complex molecular interactions that shape the plant microbiota.
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19
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Shaffique S, Imran M, Wani SH, Khan MA, Kang SM, Adhikari A, Lee IJ. Evaluating the adhesive potential of the newly isolated bacterial strains in research exploitation of plant microbial interaction. FRONTIERS IN PLANT SCIENCE 2022; 13:1004331. [PMID: 36340407 PMCID: PMC9634002 DOI: 10.3389/fpls.2022.1004331] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 10/06/2022] [Indexed: 05/26/2023]
Abstract
Bacterial adhesion potential constitutes the transition of bacteria from the planktonic to the static phase by promoting biofilm formation, which plays a significant role in plant-microbial interaction in the agriculture industry. In present study, the adhesion potential of five soil-borne bacterial strains belonging to different genera was studied. All bacterial strains were capable of forming colonies and biofilms of different levels of firmness on polystyrene. Significant variation was observed in hydrophobicity and motility assays. Among the five bacterial strains (SH-6, SH-8, SH-9, SH-10, and SH-19), SH-19 had a strong hydrophobic force, while SH-10 showed the most hydrophilic property. SH-6 showed great variability in motility; SH-8 had a swimming diffusion diameter of 70 mm, which was three times higher than that of SH-19. In the motility assay, SH-9 and SH-10 showed diffusion diameters of approximately 22 mm and 55 mm, respectively. Furthermore, among the five strains, four are predominately electron donors and one is electron acceptors. Overall, positive correlation was observed among Lewis acid base properties, hydrophobicity, and biofilm forming ability. However, no correlation of motility with bacterial adhesion could be found in present experimental work. Scanning electron microscopy images confirmed the adhesion potential and biofilm ability within extra polymeric substances. Research on the role of adhesion in biofilm formation of bacteria isolated from plants is potentially conducive for developing strategies such as plant-microbial interaction to mitigate the abiotic stress.
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Affiliation(s)
- Shifa Shaffique
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Muhammad Imran
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Shabir Hussain Wani
- Mountain Research for Field Crops Khudwani, Sher-e Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, Jamu and Kashmir, India
| | - Muhamad Aqil Khan
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Sang-Mo Kang
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Arjun Adhikari
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
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20
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Dwivedi V, Kumar SR, Shilpashree HB, Krishna R, Rao S, Shasany AK, Olsson SB, Nagegowda DA. An inducible potato (E,E)-farnesol synthase confers tolerance against bacterial pathogens in potato and tobacco. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:1308-1323. [PMID: 35778946 DOI: 10.1111/tpj.15890] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Revised: 06/10/2022] [Accepted: 06/24/2022] [Indexed: 06/15/2023]
Abstract
Terpene synthases (TPSs) have diverse biological functions in plants. Though the roles of TPSs in herbivore defense are well established in many plant species, their role in bacterial defense has been scarce and is emerging. Through functional genomics, here we report the in planta role of potato (Solanum tuberosum) terpene synthase (StTPS18) in bacterial defense. Expression of StTPS18 was highest in leaves and was induced in response to Pseudomonas syringae and methyl jasmonate treatments. The recombinant StTPS18 exhibited bona fide (E,E)-farnesol synthase activity forming a sesquiterpenoid, (E,E)-farnesol as the sole product, utilising (E,E)-farnesyl diphosphate (FPP). Subcellular localization of GFP fusion protein revealed that StTPS18 is localized to the cytosol. Silencing and overexpression of StTPS18 in potato resulted in reduced and enhanced tolerance, respectively, to bacterial pathogens P. syringae and Ralstonia solanacearum. Bacterial growth assay using medium containing (E,E)-farnesol significantly inhibited P. syringae growth. Moreover, StTPS18 overexpressing transgenic potato and Nicotiana tabacum leaves, and (E,E)-farnesol and P. syringae infiltrated potato leaves exhibited elevated expression of sterol pathway and members of pathogenesis-related genes with enhanced phytosterol accumulation. Interestingly, enhanced phytosterols in 13 C3 -(E,E)-farnesol infiltrated potato leaves were devoid of any noticeable 13 C labeling, indicating no direct utilization of (E,E)-farnesol in phytosterols formation. Furthermore, leaves of StTPS18 overexpressing transgenic lines had no detectable (E,E)-farnesol similar to the control plant, and emitted lower levels of sesquiterpenes than the control. These findings point towards an indirect involvement of StTPS18 and its product (E,E)-farnesol in bacterial defense through upregulation of phytosterol biosynthesis and defense genes.
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Affiliation(s)
- Varun Dwivedi
- Molecular Plant Biology and Biotechnology Lab, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bengaluru, 560065, India
| | - Sarma Rajeev Kumar
- Molecular Plant Biology and Biotechnology Lab, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bengaluru, 560065, India
| | - H B Shilpashree
- Molecular Plant Biology and Biotechnology Lab, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bengaluru, 560065, India
| | - Ram Krishna
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, 226015, India
| | - Srinivas Rao
- Naturalist-Inspired Chemical Ecology, National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bengaluru, 560065, India
| | - Ajit K Shasany
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, 226015, India
- ICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India
| | - Shannon B Olsson
- Naturalist-Inspired Chemical Ecology, National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bengaluru, 560065, India
| | - Dinesh A Nagegowda
- Molecular Plant Biology and Biotechnology Lab, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bengaluru, 560065, India
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21
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Wang Y, Luo H, Wang H, Xiang Z, Wei S, Zheng W. Comparative transcriptome analysis of rice cultivars resistant and susceptible to Rhizoctonia solani AG1-IA. BMC Genomics 2022; 23:606. [PMID: 35986248 PMCID: PMC9392349 DOI: 10.1186/s12864-022-08816-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Accepted: 08/03/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Rice sheath blight, which is caused by Rhizoctonia solani, is the most destructive disease affecting rice production, but the resistance mechanism to this pathogen has not been fully elucidated. RESULTS In this study, we selected two rice cultivars based on their resistance to the pathogen and analyzed and compared the transcriptomic profiles of two cultivars, the moderately resistant variety Gangyuan8 and the highly susceptible variety Yanfeng47, at different time points after inoculation. The comparative transcriptome profiling showed that the expression of related genes gradually increased after pathogen inoculation. The number of differentially expressed genes (DEGs) in Yanfeng47 was higher than that in Gangyuan8, and this result revealed that Yanfeng47 was more susceptible to fungal attack. At the early stage (24 and 48 h), the accumulation of resistance genes and a resistance metabolism occurred earlier in Ganguan8 than in Yanfeng47, and the resistance enrichment entries were more abundant in Ganguan8 than in Yanfeng47. CONCLUSIONS Based on the GO and KEGG enrichment analyses at five infection stages, we concluded that phenylalanine metabolism and the jasmonic acid pathway play a crucial role in the resistance of rice to sheath blight. Through a comparative transcriptome analysis, we preliminarily analyzed the molecular mechanism responsible for resistance to sheath blight in rice, and the results lay the foundation for the development of gene mining and functional research on rice resistance to sheath blight.
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Affiliation(s)
- Yan Wang
- College of Plant Protection, Department of Plant Pathology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
| | - Hang Luo
- College of Plant Protection, Department of Plant Pathology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
| | - Haining Wang
- College of Plant Protection, Department of Plant Pathology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
| | - Zongjing Xiang
- College of Plant Protection, Department of Plant Pathology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China
| | - Songhong Wei
- College of Plant Protection, Department of Plant Pathology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China.
| | - Wenjing Zheng
- Liaoning Rice Research Institute, Shenyang, 110101, Liaoning, China
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22
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Biniaz Y, Tahmasebi A, Tahmasebi A, Albrectsen BR, Poczai P, Afsharifar A. Transcriptome Meta-Analysis Identifies Candidate Hub Genes and Pathways of Pathogen Stress Responses in Arabidopsis thaliana. BIOLOGY 2022; 11:1155. [PMID: 36009782 PMCID: PMC9404733 DOI: 10.3390/biology11081155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/25/2022] [Accepted: 07/29/2022] [Indexed: 11/17/2022]
Abstract
Following a pathogen attack, plants defend themselves using multiple defense mechanisms to prevent infections. We used a meta-analysis and systems-biology analysis to search for general molecular plant defense responses from transcriptomic data reported from different pathogen attacks in Arabidopsis thaliana. Data from seven studies were subjected to meta-analysis, which revealed a total of 3694 differentially expressed genes (DEGs), where both healthy and infected plants were considered. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis further suggested that the DEGs were involved in several biosynthetic metabolic pathways, including those responsible for the biosynthesis of secondary metabolites and pathways central to photosynthesis and plant-pathogen interactions. Using network analysis, we highlight the importance of WRKY40, WRKY46 and STZ, and suggest that they serve as major points in protein-protein interactions. This is especially true regarding networks of composite-metabolic responses by pathogens. In summary, this research provides a new approach that illuminates how different mechanisms of transcriptome responses can be activated in plants under pathogen infection and indicates that common genes vary in their ability to regulate plant responses to the pathogens studied herein.
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Affiliation(s)
- Yaser Biniaz
- Plant Virology Research Center, Faculty of Agriculture, Shiraz University, Shiraz 7194685115, Iran;
| | - Ahmad Tahmasebi
- Institute of Biotechnology, Faculty of Agriculture, Shiraz University, Shiraz 7194685115, Iran;
| | - Aminallah Tahmasebi
- Department of Agriculture, Minab Higher Education Center, University of Hormozgan, Bandar Abbas 7916193145, Iran;
- Plant Protection Research Group, University of Hormozgan, Bandar Abbas 7916193145, Iran
| | - Benedicte Riber Albrectsen
- Department of Plant Physiology, Faculty of Science and Technology, Umeå University, 901 87 Umeå, Sweden;
| | - Péter Poczai
- Botany Unit, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, FI-00014 Helsinki, Finland
- Faculty of Biological and Environmental Sciences, University of Helsinki, P.O. Box 65, FI-00065 Helsinki, Finland
- Institute of Advanced Studies Kőszeg (iASK), P.O. Box 4, H-9731 Kőszeg, Hungary
| | - Alireza Afsharifar
- Plant Virology Research Center, Faculty of Agriculture, Shiraz University, Shiraz 7194685115, Iran;
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23
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Zhao P, Liu L, Cao J, Wang Z, Zhao Y, Zhong N. Transcriptome Analysis of Tryptophan-Induced Resistance against Potato Common Scab. Int J Mol Sci 2022; 23:ijms23158420. [PMID: 35955553 PMCID: PMC9369096 DOI: 10.3390/ijms23158420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 07/22/2022] [Accepted: 07/26/2022] [Indexed: 02/04/2023] Open
Abstract
Potato common scab (CS) is a worldwide soil-borne disease that severely reduces tuber quality and market value. We observed that foliar application of tryptophan (Trp) could induce resistance against CS. However, the mechanism of Trp as an inducer to trigger host immune responses is still unclear. To facilitate dissecting the molecular mechanisms, the transcriptome of foliar application of Trp and water (control, C) was compared under Streptomyces scabies (S) inoculation and uninoculation. Results showed that 4867 differentially expressed genes (DEGs) were identified under S. scabies uninoculation (C-vs-Trp) and 2069 DEGs were identified under S. scabies inoculation (S-vs-S+Trp). Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses indicated that Trp induced resistance related to the metabolic process, response to stimulus, and biological regulation. As phytohormone metabolic pathways related to inducing resistance, the expression patterns of candidate genes involved in salicylic acid (SA) and jasmonic acid/ethylene (JA/ET) pathways were analyzed using qRT-PCR. Their expression patterns showed that the systemic acquired resistance (SAR) and induced systemic resistance (ISR) pathways could be co-induced by Trp under S. scabies uninoculation. However, the SAR pathway was induced by Trp under S. scabies inoculation. This study will provide insights into Trp-induced resistance mechanisms of potato for controlling CS, and extend the application methods of Trp as a plant resistance inducer in a way that is cheap, safe, and environmentally friendly.
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Affiliation(s)
- Pan Zhao
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (L.L.); (J.C.); (Z.W.); (Y.Z.)
- Engineering Laboratory for Advanced Microbial Technology of Agriculture, Chinese Academy of Sciences, Beijing 100101, China
- The Enterprise Key Laboratory of Advanced Technology for Potato Fertilizer and Pesticide, Hulunbuir 021000, China
- Correspondence: (P.Z.); (N.Z.)
| | - Lu Liu
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (L.L.); (J.C.); (Z.W.); (Y.Z.)
- Engineering Laboratory for Advanced Microbial Technology of Agriculture, Chinese Academy of Sciences, Beijing 100101, China
| | - Jingjing Cao
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (L.L.); (J.C.); (Z.W.); (Y.Z.)
- Engineering Laboratory for Advanced Microbial Technology of Agriculture, Chinese Academy of Sciences, Beijing 100101, China
| | - Zhiqin Wang
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (L.L.); (J.C.); (Z.W.); (Y.Z.)
- Engineering Laboratory for Advanced Microbial Technology of Agriculture, Chinese Academy of Sciences, Beijing 100101, China
| | - Yonglong Zhao
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (L.L.); (J.C.); (Z.W.); (Y.Z.)
- Engineering Laboratory for Advanced Microbial Technology of Agriculture, Chinese Academy of Sciences, Beijing 100101, China
| | - Naiqin Zhong
- State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (L.L.); (J.C.); (Z.W.); (Y.Z.)
- Engineering Laboratory for Advanced Microbial Technology of Agriculture, Chinese Academy of Sciences, Beijing 100101, China
- The Enterprise Key Laboratory of Advanced Technology for Potato Fertilizer and Pesticide, Hulunbuir 021000, China
- Correspondence: (P.Z.); (N.Z.)
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24
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Vulnerability of non-native invasive plants to novel pathogen attack: do plant traits matter? Biol Invasions 2022. [DOI: 10.1007/s10530-022-02853-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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25
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Shoji T, Umemoto N, Saito K. Genetic divergence in transcriptional regulators of defense metabolism: insight into plant domestication and improvement. PLANT MOLECULAR BIOLOGY 2022; 109:401-411. [PMID: 34114167 DOI: 10.1007/s11103-021-01159-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Accepted: 05/29/2021] [Indexed: 05/23/2023]
Abstract
A number of mutational changes in transcriptional regulators of defense metabolism have occurred during plant domestication and improvement. Plant domestication and improvement entail genetic changes that underlie divergence in development and metabolism, providing a tremendous model of biological evolution. Plant metabolism produces numerous specialized alkaloids, terpenoids, phenolics, and cyanogenic glucosides with indispensable roles in defense against herbivory and microbial infection. Many compounds toxic or deterrent to predators have been eliminated through domestication and breeding. Series of genes involved in defense metabolism are coordinately regulated by transcription factors that specifically recognize cis-regulatory elements in promoter regions of downstream target genes. Recent developments in DNA sequencing technologies and genomic approaches have facilitated studies of the metabolic and genetic changes in chemical defense that have occurred via human-mediated selection, many of which result from mutations in transcriptional regulators of defense metabolism. In this article, we review such examples in almond (Prunus dulcis), cucumber (Cucumis sativus), pepper (Capsicum spp.), potato (Solanum tuberosum), quinoa (Chenopodium quinoa), sorghum (Sorghum bicolor), and related species and discuss insights into the evolution and regulation of metabolic pathways for specialized defense compounds.
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Affiliation(s)
- Tsubasa Shoji
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
| | - Naoyuki Umemoto
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Kazuki Saito
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Plant Molecular Science Center, Chiba University, Chuo-ku, Chiba, 260-8675, Japan
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26
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Shaffique S, Khan MA, Wani SH, Pande A, Imran M, Kang SM, Rahim W, Khan SA, Bhatta D, Kwon EH, Lee IJ. A Review on the Role of Endophytes and Plant Growth Promoting Rhizobacteria in Mitigating Heat Stress in Plants. Microorganisms 2022; 10:microorganisms10071286. [PMID: 35889005 PMCID: PMC9319882 DOI: 10.3390/microorganisms10071286] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 06/17/2022] [Accepted: 06/20/2022] [Indexed: 02/04/2023] Open
Abstract
Among abiotic stresses, heat stress is described as one of the major limiting factors of crop growth worldwide, as high temperatures elicit a series of physiological, molecular, and biochemical cascade events that ultimately result in reduced crop yield. There is growing interest among researchers in the use of beneficial microorganisms. Intricate and highly complex interactions between plants and microbes result in the alleviation of heat stress. Plant–microbe interactions are mediated by the production of phytohormones, siderophores, gene expression, osmolytes, and volatile compounds in plants. Their interaction improves antioxidant activity and accumulation of compatible osmolytes such as proline, glycine betaine, soluble sugar, and trehalose, and enriches the nutrient status of stressed plants. Therefore, this review aims to discuss the heat response of plants and to understand the mechanisms of microbe-mediated stress alleviation on a physio-molecular basis. This review indicates that microbes have a great potential to enhance the protection of plants from heat stress and enhance plant growth and yield. Owing to the metabolic diversity of microorganisms, they can be useful in mitigating heat stress in crop plants. In this regard, microorganisms do not present new threats to ecological systems. Overall, it is expected that continued research on microbe-mediated heat stress tolerance in plants will enable this technology to be used as an ecofriendly tool for sustainable agronomy.
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Affiliation(s)
- Shifa Shaffique
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
| | - Muhammad Aaqil Khan
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
| | - Shabir Hussain Wani
- Mountain Research Center for Field Crops Khudwani, Shere-e-Kashmir University of Agriculture Sciences and Technology Srinagar, Anantnag 190025, Jammu and Kashmir, India;
| | - Anjali Pande
- Laboratory of Plant Molecular Pathology and Functional Genomics, Department of Plant Biosciences, School of Applied Biosciences, College of Agriculture and Life Science, Kyungpook National University, Daegu 41944, Korea; (A.P.); (W.R.)
| | - Muhammad Imran
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
| | - Sang-Mo Kang
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
| | - Waqas Rahim
- Laboratory of Plant Molecular Pathology and Functional Genomics, Department of Plant Biosciences, School of Applied Biosciences, College of Agriculture and Life Science, Kyungpook National University, Daegu 41944, Korea; (A.P.); (W.R.)
| | - Sumera Afzal Khan
- Centre of Biotechnology and Microbiology, University of Peshawar, Peshawar 45000, Pakistan;
| | - Dibya Bhatta
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
| | - Eun-Hae Kwon
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.S.); (M.A.K.); (M.I.); (S.-M.K.); (D.B.); (E.-H.K.)
- Correspondence: ; Tel.: +82-53-950-5708
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27
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Chang A, Hu Z, Chen B, Vanderschuren H, Chen M, Qu Y, Yu W, Li Y, Sun H, Cao J, Vasudevan K, Li C, Cao Y, Zhang J, Shen Y, Yang A, Wang Y. Characterization of trichome-specific BAHD acyltransferases involved in acylsugar biosynthesis in Nicotiana tabacum. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:3913-3928. [PMID: 35262703 DOI: 10.1093/jxb/erac095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 03/07/2022] [Indexed: 06/14/2023]
Abstract
Glandular trichomes of tobacco (Nicotiana tabacum) produce blends of acylsucroses that contribute to defence against pathogens and herbivorous insects, but the mechanism of assembly of these acylsugars has not yet been determined. In this study, we isolated and characterized two trichome-specific acylsugar acyltransferases that are localized in the endoplasmic reticulum, NtASAT1 and NtASAT2. They sequentially catalyse two additive steps of acyl donors to sucrose to produce di-acylsucrose. Knocking out of NtASAT1 or NtASAT2 resulted in deficiency of acylsucrose; however, there was no effect on acylsugar accumulation in plants overexpressing NtASAT1 or NtASAT2. Genomic analysis and profiling revealed that NtASATs originated from the T subgenome, which is derived from the acylsugar-producing diploid ancestor N. tomentosiformis. Our identification of NtASAT1 and NtASAT2 as enzymes involved in acylsugar assembly in tobacco potentially provides a new approach and target genes for improving crop resistance against pathogens and insects.
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Affiliation(s)
- Aixia Chang
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
- Plant Genetics Laboratory, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium
| | - Zhongyi Hu
- Jiangxi Food Inspection and Testing Research Institute, Nanchang, 330001, China
| | - Biao Chen
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Herve Vanderschuren
- Plant Genetics Laboratory, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium
- Tropical Crop Improvement Lab, Department of Biosystems, KU Leuven, Heverlee, Belgium
| | - Ming Chen
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Yafang Qu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Weisong Yu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Yangyang Li
- Hunan Tobacco Research Institute, Changsha, 410004, China
| | - Huiqing Sun
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Jianmin Cao
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Kumar Vasudevan
- Plant Genetics Laboratory, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium
| | - Chenying Li
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Yanan Cao
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Jianye Zhang
- Green Catalysis Center, College of Chemistry, Zhengzhou University, Zhengzhou, 450001, China
| | - Yeming Shen
- Green Catalysis Center, College of Chemistry, Zhengzhou University, Zhengzhou, 450001, China
| | - Aiguo Yang
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Yuanying Wang
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
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28
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Abstract
The findings on the strategies employed by endophytic microbes have provided salient information to the researchers on the need to maximally explore them as bio-input in agricultural biotechnology. Biotic and abiotic factors are known to influence microbial recruitments from external plant environments into plant tissues. Endophytic microbes exhibit mutualism or antagonism association with host plants. The beneficial types contribute to plant growth and soil health, directly or indirectly. Strategies to enhance the use of endophytic microbes are desirable in modern agriculture, such that these microbes can be applied individually or combined as bioinoculants with bioprospecting in crop breeding systems. Scant information is available on the strategies for shaping the endophytic microbiome; hence, the need to unravel microbial strategies for yield enhancement and pathogen suppressiveness have become imperative. Therefore, this review focuses on the endophytic microbiome, mechanisms, factors influencing endophyte recruitment, and strategies for possible exploration as bioinoculants.
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29
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Bai Y, Yang C, Halitschke R, Paetz C, Kessler D, Burkard K, Gaquerel E, Baldwin IT, Li D. Natural history-guided omics reveals plant defensive chemistry against leafhopper pests. Science 2022; 375:eabm2948. [PMID: 35113706 DOI: 10.1126/science.abm2948] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Although much is known about plant traits that function in nonhost resistance against pathogens, little is known about nonhost resistance against herbivores, despite its agricultural importance. Empoasca leafhoppers, serious agricultural pests, identify host plants by eavesdropping on unknown outputs of jasmonate (JA)-mediated signaling. Forward- and reverse-genetics lines of a native tobacco plant were screened in native habitats with native herbivores using high-throughput genomic, transcriptomic, and metabolomic tools to reveal an Empoasca-elicited JA-JAZi module. This module induces an uncharacterized caffeoylputrescine-green leaf volatile compound, catalyzed by a polyphenol oxidase in a Michael addition reaction, which we reconstitute in vitro; engineer in crop plants, where it requires a berberine bridge enzyme-like 2 (BBL2) for its synthesis; and show that it confers resistance to leafhoppers. Natural history-guided forward genetics reveals a conserved nonhost resistance mechanism useful for crop protection.
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Affiliation(s)
- Yuechen Bai
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Caiqiong Yang
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Rayko Halitschke
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Christian Paetz
- Department of Biosynthesis/NMR, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Danny Kessler
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Konrad Burkard
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Emmanuel Gaquerel
- Institut de Biologie Moléculaire des Plantes du CNRS, Université de Strasbourg, Strasbourg, France
| | - Ian T Baldwin
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany
| | - Dapeng Li
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- CAS-JIC Center of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
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30
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Ampt EA, van Ruijven J, Zwart MP, Raaijmakers JM, Termorshuizen AJ, Mommer L. Plant neighbours can make or break the disease transmission chain of a fungal root pathogen. THE NEW PHYTOLOGIST 2022; 233:1303-1316. [PMID: 34787907 PMCID: PMC9300135 DOI: 10.1111/nph.17866] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 11/04/2021] [Indexed: 05/07/2023]
Abstract
Biodiversity can reduce or increase disease transmission. These divergent effects suggest that community composition rather than diversity per se determines disease transmission. In natural plant communities, little is known about the functional roles of neighbouring plant species in belowground disease transmission. Here, we experimentally investigated disease transmission of a fungal root pathogen (Rhizoctonia solani) in two focal plant species in combinations with four neighbour species of two ages. We developed stochastic models to test the relative importance of two transmission-modifying mechanisms: (1) infected hosts serve as nutrient supply to increase hyphal growth, so that successful disease transmission is self-reinforcing; and (2) plant resistance increases during plant development. Neighbouring plants either reduced or increased disease transmission in the focal plants. These effects depended on neighbour age, but could not be explained by a simple dichotomy between hosts and nonhost neighbours. Model selection revealed that both transmission-modifying mechanisms are relevant and that focal host-neighbour interactions changed which mechanisms steered disease transmission rate. Our work shows that neighbour-induced shifts in the importance of these mechanisms across root networks either make or break disease transmission chains. Understanding how diversity affects disease transmission thus requires integrating interactions between focal and neighbour species and their pathogens.
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Affiliation(s)
- Eline A. Ampt
- Plant Ecology and Nature Conservation GroupWageningen UniversityPO Box 47Wageningen6700 AAthe Netherlands
| | - Jasper van Ruijven
- Plant Ecology and Nature Conservation GroupWageningen UniversityPO Box 47Wageningen6700 AAthe Netherlands
| | - Mark P. Zwart
- Department of Microbial EcologyNetherlands Institute for Ecology (NIOO‐KNAW)PO Box 50Wageningen6700 ABthe Netherlands
| | - Jos M. Raaijmakers
- Department of Microbial EcologyNetherlands Institute for Ecology (NIOO‐KNAW)PO Box 50Wageningen6700 ABthe Netherlands
| | | | - Liesje Mommer
- Plant Ecology and Nature Conservation GroupWageningen UniversityPO Box 47Wageningen6700 AAthe Netherlands
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31
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Panda S, Jozwiak A, Sonawane PD, Szymanski J, Kazachkova Y, Vainer A, Vasuki Kilambi H, Almekias-Siegl E, Dikaya V, Bocobza S, Shohat H, Meir S, Wizler G, Giri AP, Schuurink R, Weiss D, Yasuor H, Kamble A, Aharoni A. Steroidal alkaloids defence metabolism and plant growth are modulated by the joint action of gibberellin and jasmonate signalling. THE NEW PHYTOLOGIST 2022; 233:1220-1237. [PMID: 34758118 DOI: 10.1111/nph.17845] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 10/28/2021] [Indexed: 06/13/2023]
Abstract
Steroidal glycoalkaloids (SGAs) are protective metabolites constitutively produced by Solanaceae species. Genes and enzymes generating the vast structural diversity of SGAs have been largely identified. Yet, mechanisms of hormone pathways coordinating defence (jasmonate; JA) and growth (gibberellin; GA) controlling SGAs metabolism remain unclear. We used tomato to decipher the hormonal regulation of SGAs metabolism during growth vs defence tradeoff. This was performed by genetic and biochemical characterisation of different JA and GA pathways components, coupled with in vitro experiments to elucidate the crosstalk between these hormone pathways mediating SGAs metabolism. We discovered that reduced active JA results in decreased SGA production, while low levels of GA or its receptor led to elevated SGA accumulation. We showed that MYC1 and MYC2 transcription factors mediate the JA/GA crosstalk by transcriptional activation of SGA biosynthesis and GA catabolism genes. Furthermore, MYC1 and MYC2 transcriptionally regulate the GA signalling suppressor DELLA that by itself interferes in JA-mediated SGA control by modulating MYC activity through protein-protein interaction. Chemical and fungal pathogen treatments reinforced the concept of JA/GA crosstalk during SGA metabolism. These findings revealed the mechanism of JA/GA interplay in SGA biosynthesis to balance the cost of chemical defence with growth.
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Affiliation(s)
- Sayantan Panda
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
- Gilat Research Center, Agricultural Research Organization (ARO), Rural delivery Negev, 85280, Israel
- Department of Botany, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, India
| | - Adam Jozwiak
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Prashant D Sonawane
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Jedrzej Szymanski
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Yana Kazachkova
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Andrii Vainer
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Himabindu Vasuki Kilambi
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Efrat Almekias-Siegl
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Varvara Dikaya
- Department of Biology I, Ludwig-Maximilians-University of Munich, Munich, Germany
| | - Samuel Bocobza
- Department of Vegetable Research, ARO-Volcani Center, Bet Dagan, 50250, Israel
| | - Hagai Shohat
- Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Sagit Meir
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Guy Wizler
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Ashok P Giri
- Plant Molecular Biology Unit, Division of Biochemical Sciences, Council of Scientific and Industrial Research-National Chemical Laboratory, Pune, 411008, India
| | - Robert Schuurink
- Green Life Sciences Research Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam, 1098 XH, the Netherlands
| | - David Weiss
- Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Hagai Yasuor
- Gilat Research Center, Agricultural Research Organization (ARO), Rural delivery Negev, 85280, Israel
| | - Avinash Kamble
- Department of Botany, Savitribai Phule Pune University, Ganeshkhind, Pune, 411007, India
| | - Asaph Aharoni
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 7610001, Israel
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32
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Santos Wagner AL, Araniti F, Ishii-Iwamoto EL, Abenavoli MR. Resveratrol exerts beneficial effects on the growth and metabolism of Lactuca sativa L. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 171:26-37. [PMID: 34971953 DOI: 10.1016/j.plaphy.2021.12.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 12/21/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
In order to assist sustainable agriculture, new strategies and methods are being used based on the utilization of new natural molecules. These natural compounds can be used as potential natural crop protectors and growth promoters, and the elucidation of their modes/mechanisms of action can represent a big step towards cleaner agriculture free of agrochemicals. In the present paper, the mechanisms underlying the effects of exogenous resveratrol (R), a natural phytoalexin found in plants, on Lactuca sativa metabolism were investigated through physiological and metabolomic approaches. The results highlighted that R stimulates the growth of lettuce. A reduction of the O2⋅- production in R-treated seedlings and an increase in the photosynthesis efficiency was observed, indicated by a higher Fv/Fm. The metabolomic analysis of lettuce seedlings treated with R identified 116 metabolites related to galactose, amino acids, sugar and nucleotide sugar, and ascorbate and aldarate metabolisms. Increased content of some polyamines and several metabolites was also observed, which may have contributed to scavenging free radicals and activating antioxidant enzymes, thus reducing oxidative damage and improving PSII protection in R-treated seedlings.
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Affiliation(s)
- Ana Luiza Santos Wagner
- Laboratory of Biological Oxidations, Department of Biochemistry, State University of Maringa, 87020900, Maringa, Brazil
| | - Fabrizio Araniti
- Department of Agricultural and Environmental Sciences (DISAA), University of Milan, Via Celoria, 2, 20133, Milan, Italy
| | - Emy Luiza Ishii-Iwamoto
- Laboratory of Biological Oxidations, Department of Biochemistry, State University of Maringa, 87020900, Maringa, Brazil.
| | - Maria Rosa Abenavoli
- Department of Agriculture, University of Reggio di Calabria, 89124, Reggio Calabria, Italy.
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Knorr D, Augustin MA. Food systems at a watershed: Unlocking the benefits of technology and ecosystem symbioses. Crit Rev Food Sci Nutr 2022; 63:5680-5697. [PMID: 34989303 DOI: 10.1080/10408398.2021.2023092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The current food systems require change to improve sustainability resilience. Humans need food and food requires natural resources which have been consistently reduced, destroyed, or eliminated during human development, and excessive during the last 50-70 years. Though essential, there has been less of a focus on the inter-relations and inter-dependences of our food supply with and on the world's eco-system and organisms. Integrating evidence for the importance of plants, the microbiota in plants, animals and humans and their reciprocal effects of their interactions on food systems is essential for creating more inclusive strategies for future food systems. This review examines the role of plants, microorganisms, plant-microbial, animal-microbial, and human-microbial interactions, their co-evolution on the food supply and human and eco-systems well-being. It also recognizes the contribution of indigenous knowledge for lasting protection of the land, managing resources and biodiversity and the usefulness of food processing for producing safe, tasty, and nutritious food sustainably. We demonstrate that new targets and priorities for harnessing science and technology for improving food and nutritional security and avoiding environmental degradation and biodiversity loss are urgently needed. For improved long-term sustainability, the benefits of technology and ecosystem interactions must be unlocked.
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Affiliation(s)
- Dietrich Knorr
- Food Biotechnology and Food Process Engineering, Technische Universität Berlin, Berlin, Germany
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Khaliq B, Falke S, Saeed Q, Bilal M, Munawar A, Ali A, Baermann G, Athar HUR, Mahmood S, Betzel C, Ali Q, Akrem A. Eruca sativa seed napin structural insights and thorough functional characterization. Sci Rep 2021; 11:24066. [PMID: 34911985 PMCID: PMC8674280 DOI: 10.1038/s41598-021-02174-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 11/01/2021] [Indexed: 11/09/2022] Open
Abstract
A potent napin protein has been thoroughly characterized from seeds of rocket salad (Eruca sativa). Eruca sativa napin (EsNap) was purified by ammonium sulfate precipitation (70%) and size-exclusion chromatography. Single intact 16 kDa EsNap band was reduced to 11 and 5 kDa bands respectively on SDS-PAGE. Nano LC-MS/MS yielded two fragments comprising of 26 residues which showed 100% sequence identity with napin-3 of Brassica napus. CD spectroscopy indicated a dominant α-helical structure of EsNap. Monodispersity of EsNap was verified by dynamic light scattering, which also confirmed the monomeric status with a corresponding hydrodynamic radius of 2.4 ± 0.2 nm. An elongated ab initio shape of EsNap was calculated based on SAXS data, with an Rg of 1.96 ± 0.1 nm. The ab initio model calculated by DAMMIF with P1 symmetry and a volume of approx. 31,100 nm3, which corresponded to a molecular weight of approximately 15.5 kDa. The comparison of the SAXS and ab initio modeling showed a minimized χ2-value of 1.87, confirming a similar molecular structure. A homology model was predicted using the coordinate information of Brassica napus rproBnIb (PDB ID: 1SM7). EsNap exhibited strong antifungal activity by significantly inhibiting the growth of Fusarium graminearum. EsNap also showed cytotoxicity against the hepatic cell line Huh7 and the obtained IC50 value was 20.49 µM. Further, strong entomotoxic activity was experienced against different life stages of stored grain insect pest T. castaneum. The result of this study shows insights that can be used in developing potential antifungal, anti-cancerous and insect resistance agents in the future using EsNap from E. sativa.
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Affiliation(s)
- Binish Khaliq
- Botany Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan.,Botany Division Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Sven Falke
- Laboratory for Structural Biology of Infection and Inflammation, The Hamburg Centre for Ultrafast Imaging, University of Hamburg, c/o DESY. Build. 22a, Notkestrasse 85, 22607, Hamburg, Germany
| | - Qamar Saeed
- Department of Entomology, Bahauddin Zakariya University, Multan, Pakistan
| | - Muhammad Bilal
- Centre for Applied Molecular Biology, University of Punjab, Lahore, Pakistan
| | - Aisha Munawar
- Department of Chemistry, University of Engineering and Technology, G.T. Road, Lahore, 54890, Pakistan
| | - Arslan Ali
- Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan
| | - Gunnar Baermann
- Molekulare Phytopathologie, Universität Hamburg, Biozentrum Klein Flottbek Ohnhorststr, 1822609, Hamburg, Germany
| | - Habib-Ur-Rehman Athar
- Botany Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Seema Mahmood
- Botany Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Christian Betzel
- Laboratory for Structural Biology of Infection and Inflammation, The Hamburg Centre for Ultrafast Imaging, University of Hamburg, c/o DESY. Build. 22a, Notkestrasse 85, 22607, Hamburg, Germany
| | - Qurban Ali
- Botany Division Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan.
| | - Ahmed Akrem
- Botany Division, Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan.
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Abstract
Saponins are a large family of amphiphilic glycosides of steroids and triterpenes found in plants and some marine organisms. By expressing a large diversity of structures on both sugar chains and aglycones, saponins exhibit a wide range of biological and pharmacological properties and serve as major active principles in folk medicines, especially in traditional Chinese medicines. Isolation of saponins from natural sources is usually a formidable task due to the microheterogeneity of saponins in Nature. Chemical synthesis can provide access to large amounts of natural saponins as well as congeners for understanding their structure-activity relationships and mechanisms of action. This article presents a comprehensive account on chemical synthesis of saponins. First highlighted are general considerations on saponin synthesis, including preparation of aglycones and carbohydrate building blocks, assembly strategies, and protecting-group strategies. Next described is the state of the art in the synthesis of each type of saponins, with an emphasis on those representative saponins having sophisticated structures and potent biological activities.
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Affiliation(s)
- You Yang
- Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, Shanghai, PR China.
| | - Stephane Laval
- State Key Laboratory of Bio-Organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, PR China
| | - Biao Yu
- State Key Laboratory of Bio-Organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, PR China.
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Durán-Medina Y, Ruiz-Cortés BE, Guerrero-Largo H, Marsch-Martínez N. Specialized metabolism and development: An unexpected friendship. CURRENT OPINION IN PLANT BIOLOGY 2021; 64:102142. [PMID: 34856480 DOI: 10.1016/j.pbi.2021.102142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 10/12/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
Plants produce a myriad of metabolites. Some of them have been regarded for a long time as secondary or specialized metabolites and are considered to have functions mostly in defense and the adaptation of plants to their environment. However, in the last years, new research has shown that these metabolites can also have roles in the regulation of plant growth and development, some acting as signals, through the interaction with hormonal pathways, and some independently of them. These reports provide a glimpse of the functional possibilities that specialized metabolites present in the modulation of plant development and encourage more research in this direction.
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Affiliation(s)
- Yolanda Durán-Medina
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico
| | - Beatriz Esperanza Ruiz-Cortés
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico
| | - Herenia Guerrero-Largo
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico
| | - Nayelli Marsch-Martínez
- Biotecnology and Biochemistry Department, Centre for Research and Advanced Studies (CINVESTAV-IPN) Irapuato Unit, Mexico.
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Monzote L, García J, González R, Scotti MT, Setzer WN. Bioactive Essential Oils from Cuban Plants: An Inspiration to Drug Development. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112515. [PMID: 34834878 PMCID: PMC8620706 DOI: 10.3390/plants10112515] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 11/15/2021] [Accepted: 11/17/2021] [Indexed: 05/07/2023]
Abstract
Aromatic plants and essential oils are important agents as complementary and alternative medicines in many cultures and geographical locations. In this review, a literature search on essential oils from Cuba, their chemical compositions, and their pharmacological properties was carried out. Out of 171 published scientific articles on essential oils of Cuban plants, a total of 31 documents, focused on both chemical composition and pharmacological properties, were considered for this review. In general, an increase in articles published in the last decade was noted, particularly in recognized international journals in English. Myrtaceae and Piperaceae were the most representative families collected in the occidental area of the country. Leaves and aerial parts were predominantly used, while a wide and variable number of components were identified, including terpenes, aliphatic derivatives, sulfur-containing compounds, phenylpropanoids, alkaloids and amine-type compounds. Finally, different biological activities were reported such as antiprotozoal, antibacterial, antifungal, cytotoxic, anthelmintic, larvicidal and insecticidal. In conclusion, we encourage further studies that would promote the use of essential oils from Cuban plants in new pharmaceutical products.
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Affiliation(s)
- Lianet Monzote
- Department of Parasitology, Center of Research, Diagnostic and Reference, Institute of Tropical Medicine “Pedro Kouri”, Havana 11400, Cuba
- Research Network Natural Products against Neglected Diseases (ResNetNPND), University of Münster, 48149 Münster, Germany;
- Correspondence: (L.M.); (W.N.S.)
| | - Jesús García
- Department of Pharmacy, Faculty of Natural and Exact Sciences, University of Oriente, Santiago de Cuba 90500, Cuba;
| | - Rosalia González
- Toxicology and Biomedicine Centre (TOXIMED), University of Medical Science, Santiago de Cuba 90400, Cuba;
| | - Marcus Tullius Scotti
- Research Network Natural Products against Neglected Diseases (ResNetNPND), University of Münster, 48149 Münster, Germany;
- Post-Graduate Program in Natural and Synthetic Bioactive Products, Federal University of Paraíba, João Pessoa 58051-900, Brazil
| | - William N. Setzer
- Research Network Natural Products against Neglected Diseases (ResNetNPND), University of Münster, 48149 Münster, Germany;
- Department of Chemistry, University of Alabama in Huntsville, Huntsville, AL 35899, USA
- Aromatic Plant Research Center, 230 N 1200 E, Suite 100, Lehi, UT 84043, USA
- Correspondence: (L.M.); (W.N.S.)
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38
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He L, Li L, Zhu Y, Pan Y, Zhang X, Han X, Li M, Chen C, Li H, Wang C. BolTLP1, a Thaumatin-like Protein Gene, Confers Tolerance to Salt and Drought Stresses in Broccoli ( Brassica oleracea L. var. Italica). Int J Mol Sci 2021. [PMID: 34681789 DOI: 10.3390/ijms222011132/s1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023] Open
Abstract
Plant thaumatin-like proteins (TLPs) play pleiotropic roles in defending against biotic and abiotic stresses. However, the functions of TLPs in broccoli, which is one of the major vegetables among the B. oleracea varieties, remain largely unknown. In the present study, bolTLP1 was identified in broccoli, and displayed remarkably inducible expression patterns by abiotic stress. The ectopic overexpression of bolTLP1 conferred increased tolerance to high salt and drought conditions in Arabidopsis. Similarly, bolTLP1-overexpressing broccoli transgenic lines significantly improved tolerance to salt and drought stresses. These results demonstrated that bolTLP1 positively regulates drought and salt tolerance. Transcriptome data displayed that bolTLP1 may function by regulating phytohormone (ABA, ethylene and auxin)-mediated signaling pathways, hydrolase and oxidoreductase activity, sulfur compound synthesis, and the differential expression of histone variants. Further studies confirmed that RESPONSE TO DESICCATION 2 (RD2), RESPONSIVE TO DEHYDRATION 22 (RD22), VASCULAR PLANT ONE-ZINC FINGER 2 (VOZ2), SM-LIKE 1B (LSM1B) and MALATE DEHYDROGENASE (MDH) physically interacted with bolTLP1, which implied that bolTLP1 could directly interact with these proteins to confer abiotic stress tolerance in broccoli. These findings provide new insights into the function and regulation of bolTLP1, and suggest potential applications for bolTLP1 in breeding broccoli and other crops with increased tolerance to salt and drought stresses.
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Affiliation(s)
- Lixia He
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Lihong Li
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Yinxia Zhu
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Yu Pan
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Xiuwen Zhang
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Xue Han
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Muzi Li
- College of Horticulture and Landscape, Tianjin Agricultural University, Tianjin 300384, China
| | - Chengbin Chen
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
| | - Hui Li
- College of Horticulture and Landscape, Tianjin Agricultural University, Tianjin 300384, China
| | - Chunguo Wang
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
- State Key Laboratory of Vegetable Germplasm Innovation, Tianjin Academy of Agricultural Sciences, Tianjin 300381, China
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39
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He L, Li L, Zhu Y, Pan Y, Zhang X, Han X, Li M, Chen C, Li H, Wang C. BolTLP1, a Thaumatin-like Protein Gene, Confers Tolerance to Salt and Drought Stresses in Broccoli ( Brassica oleracea L. var. Italica). Int J Mol Sci 2021; 22:ijms222011132. [PMID: 34681789 PMCID: PMC8537552 DOI: 10.3390/ijms222011132] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 10/09/2021] [Accepted: 10/11/2021] [Indexed: 11/16/2022] Open
Abstract
Plant thaumatin-like proteins (TLPs) play pleiotropic roles in defending against biotic and abiotic stresses. However, the functions of TLPs in broccoli, which is one of the major vegetables among the B. oleracea varieties, remain largely unknown. In the present study, bolTLP1 was identified in broccoli, and displayed remarkably inducible expression patterns by abiotic stress. The ectopic overexpression of bolTLP1 conferred increased tolerance to high salt and drought conditions in Arabidopsis. Similarly, bolTLP1-overexpressing broccoli transgenic lines significantly improved tolerance to salt and drought stresses. These results demonstrated that bolTLP1 positively regulates drought and salt tolerance. Transcriptome data displayed that bolTLP1 may function by regulating phytohormone (ABA, ethylene and auxin)-mediated signaling pathways, hydrolase and oxidoreductase activity, sulfur compound synthesis, and the differential expression of histone variants. Further studies confirmed that RESPONSE TO DESICCATION 2 (RD2), RESPONSIVE TO DEHYDRATION 22 (RD22), VASCULAR PLANT ONE-ZINC FINGER 2 (VOZ2), SM-LIKE 1B (LSM1B) and MALATE DEHYDROGENASE (MDH) physically interacted with bolTLP1, which implied that bolTLP1 could directly interact with these proteins to confer abiotic stress tolerance in broccoli. These findings provide new insights into the function and regulation of bolTLP1, and suggest potential applications for bolTLP1 in breeding broccoli and other crops with increased tolerance to salt and drought stresses.
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Affiliation(s)
- Lixia He
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Lihong Li
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Yinxia Zhu
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Yu Pan
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Xiuwen Zhang
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Xue Han
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Muzi Li
- College of Horticulture and Landscape, Tianjin Agricultural University, Tianjin 300384, China;
| | - Chengbin Chen
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
| | - Hui Li
- College of Horticulture and Landscape, Tianjin Agricultural University, Tianjin 300384, China;
- Correspondence: (H.L.); (C.W.)
| | - Chunguo Wang
- Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China; (L.H.); (L.L.); (Y.Z.); (Y.P.); (X.Z.); (X.H.); (C.C.)
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
- State Key Laboratory of Vegetable Germplasm Innovation, Tianjin Academy of Agricultural Sciences, Tianjin 300381, China
- Correspondence: (H.L.); (C.W.)
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40
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Sivasankara Pillai S, Dandurand LM. Effect of Steroidal Glycoalkaloids on Hatch and Reproduction of the Potato Cyst Nematode Globodera pallida. PLANT DISEASE 2021; 105:2975-2980. [PMID: 33754862 DOI: 10.1094/pdis-02-21-0247-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Steroidal glycoalkaloids (SGAs) are phytoanticipins found in solanaceous crops that act as the first line of chemical defense against pathogen attacks. Solanum sisymbriifolium, a trap crop for potato cyst nematodes, has been shown to effectively reduce populations of Globodera pallida. S. sisymbriifolium contains α-solamargine and other solasodine-type glycoalkaloids that may contribute to plant defenses. This study evaluated the influence of solanaceous SGAs on G. pallida hatch, development, and reproduction. Exposure to α-solamargine and α-solamarine reduced G. pallida hatch by 65 and 87%, respectively. Exposure of G. pallida cysts with the glycoalkaloids α-solamargine and solasodine significantly reduced infection in susceptible potato 'Russet Burbank' by 98 and 94% compared with the control. Exposure of cysts to either solasodine or solamargine significantly reduced reproduction of G. pallida on 'Russet Burbank' by 99% compared with the control. The study demonstrated the deleterious effect of SGAs on G. pallida hatch, infection, and reproduction.
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Affiliation(s)
| | - Louise-Marie Dandurand
- Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID 83844
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41
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Yamaguchi K, Kawasaki T. Pathogen- and plant-derived peptides trigger plant immunity. Peptides 2021; 144:170611. [PMID: 34303752 DOI: 10.1016/j.peptides.2021.170611] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 07/06/2021] [Accepted: 07/09/2021] [Indexed: 12/29/2022]
Abstract
Plants are constantly exposed to pathogens in their immediate environment. Plants sense the invasion of pathogens by recognizing the components including peptide fragments derived from pathogens, known as pathogen-associated molecular patterns (PAMPs). Plants also produce immunogenic peptides called phytocytokines that regulate immune responses. These molecules are recognized by pattern recognition receptors (PRRs) at plasma membrane. Activated PRRs induce a variety of immune responses including production of reactive oxygen species (ROS), induction of Ca2+ influx and activation of mitogen activated protein kinases (MAPKs). Pattern-triggered immunity (PTI) wards off microbes and pests. In this review, we summarize recent our advances in understanding how the peptide fragments are generated and perceived by plant PRRs at cell surface, and the activated PRRs transduce the downstream immune signaling.
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Affiliation(s)
- Koji Yamaguchi
- Department of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara 631-8505, Japan
| | - Tsutomu Kawasaki
- Department of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara 631-8505, Japan; Agricultural Technology and Innovation Research Institute, Kindai University, Nakamachi, Nara 631-8505, Japan.
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42
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Xue R, Feng M, Chen J, Ge W, Blair MW. A methyl esterase 1 (PvMES1) promotes the salicylic acid pathway and enhances Fusarium wilt resistance in common beans. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:2379-2398. [PMID: 34128089 DOI: 10.1007/s00122-021-03830-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 03/30/2021] [Indexed: 06/12/2023]
Abstract
Methyl esterase (MES), PvMES1, contributes to the defense response toward Fusarium wilt in common beans by regulating the salicylic acid (SA) mediated signaling pathway from phenylpropanoid synthesis and sugar metabolism as well as others. Common bean (Phaseolus vulgaris L.) is an important food legume. Fusarium wilt caused by Fusarium oxysporum f. sp. phaseoli is one of the most serious soil-borne diseases of common bean found throughout the world and affects the yield and quality of the crop. Few sources of Fusarium wilt resistance exist in legumes and most are of quantitative inheritance. In this study, we have identified a methyl esterase (MES), PvMES1, that contributes to plant defense response by regulating the salicylic acid (SA) mediated signaling pathway in response to Fusarium wilt in common beans. The result showed the role of PvMES1 in regulating SA levels in common bean and thus the SA signaling pathway and defense response mechanism in the plant. Overexpression of the PvMES1 gene enhanced Fusarium wilt resistance; while silencing of the gene caused susceptibility to the diseases. RNA-seq analysis with these transiently modified plants showed that genes related to SA level changes included the following gene ontologies: (a) phenylpropanoid synthesis; (b) sugar metabolism; and (c) interaction between host and pathogen as well as others. These key signal elements activated the defense response pathway in common bean to Fusarium wilt. Collectively, our findings indicate that PvMES1 plays a pivotal role in regulating SA biosynthesis and signaling, and increasing Fusarium wilt resistance in common bean, thus providing novel insight into the practical applications of both SA and MES genes and pathways they contribute to for developing elite crop varieties with enhanced broad-spectrum resistance to this critical disease.
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Affiliation(s)
- Renfeng Xue
- Crop Research Institute, Liaoning Academy of Agricultural Sciences, Shenyang, 110161, LN, China.
| | - Ming Feng
- Crop Research Institute, Liaoning Academy of Agricultural Sciences, Shenyang, 110161, LN, China
| | - Jian Chen
- Crop Research Institute, Liaoning Academy of Agricultural Sciences, Shenyang, 110161, LN, China
| | - Weide Ge
- Crop Research Institute, Liaoning Academy of Agricultural Sciences, Shenyang, 110161, LN, China
| | - Matthew W Blair
- Department of Agricultural and Environmental Sciences, Tennessee State University, Nashville, TN, 37209, USA
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43
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Liang J, Shen Q, Wang L, Liu J, Fu J, Zhao L, Xu M, Peters RJ, Wang Q. Rice contains a biosynthetic gene cluster associated with production of the casbane-type diterpenoid phytoalexin ent-10-oxodepressin. THE NEW PHYTOLOGIST 2021; 231:85-93. [PMID: 33892515 PMCID: PMC9044444 DOI: 10.1111/nph.17406] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 04/14/2021] [Indexed: 05/03/2023]
Abstract
Diterpenoids play important roles in rice microbial disease resistance as phytoalexins, as well as acting in allelopathy and abiotic stress responses. Recently, the casbane-type phytoalexin ent-10-oxodepressin was identified in rice, but its biosynthesis has not yet been elucidated. Here ent-10-oxodepressin biosynthesis was investigated via co-expression analysis and biochemical characterisation, with use of the CRISPR/Cas9 technology for genetic analysis. The results identified a biosynthetic gene cluster (BGC) on rice chromosome 7 (c7BGC), containing the relevant ent-casbene synthase (OsECBS), and four cytochrome P450 (CYP) genes from the CYP71Z subfamily. Three of these CYPs were shown to act on ent-casbene, with CYP71Z2 able to produce a keto group at carbon-5 (C5), while the closely related paralogues CYP71Z21 and CYP71Z22 both readily produce a keto group at C10. Together these C5 and C10 oxidases can elaborate ent-casbene to ent-10-oxodepressin (5,10-diketo-ent-casbene). OsECBS knockout lines no longer produce casbane-type diterpenoids and exhibit impaired resistance to the rice fungal blast pathogen Magnaporthe oryzae. Elucidation of ent-10-oxodepressin biosynthesis and the associated c7BGC provides not only a potential target for molecular breeding, but also, gives the intriguing parallels to the independently assembled BGCs for casbene-derived diterpenoids in the Euphorbiaceae, further insight into plant BGC evolution, as discussed here.
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Affiliation(s)
- Jin Liang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Qinqin Shen
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Liping Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Jiang Liu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Jingye Fu
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Le Zhao
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Meimei Xu
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Reuben J Peters
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA
| | - Qiang Wang
- State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Chengdu, Sichuan 611130, China; College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
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Kempthorne CJ, Nielsen AJ, Wilson DC, McNulty J, Cameron RK, Liscombe DK. Metabolite profiling reveals a role for intercellular dihydrocamalexic acid in the response of mature Arabidopsis thaliana to Pseudomonas syringae. PHYTOCHEMISTRY 2021; 187:112747. [PMID: 33823457 DOI: 10.1016/j.phytochem.2021.112747] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 03/14/2021] [Accepted: 03/18/2021] [Indexed: 06/12/2023]
Abstract
The leaf intercellular space is a site of plant-microbe interactions where pathogenic bacteria such as Pseudomonas syringae grow. In Arabidopsis thaliana, the biosynthesis of tryptophan-derived indolic metabolites is induced by P. syringae infection. Using high-resolution mass spectrometry-based profiling and biosynthetic mutants, we investigated the role of indolic compounds and other small molecules in the response of mature Arabidopsis to P. syringae. We observed dihydrocamalexic acid (DHCA), the precursor to the defense-related compound camalexin, accumulating in intercellular washing fluids (IWFs) without further conversion to camalexin. The indolic biosynthesis mutant cyp71a12/cyp71a13 was more susceptible to P. syringae compared to mature wild-type plants displaying age-related resistance (ARR). DHCA and structural analogs inhibit P. syringae growth (MIC ~ 500 μg/mL), but not at concentrations found in IWFs, and DHCA did not inhibit biofilm formation in vitro. However, infiltration of exogenous DHCA enhanced resistance in mature cyp71a12/cyp71a13. These results provide evidence that DHCA derived from CYP71A12 and CYP71A13 activity accumulates in the intercellular space and contributes to the resistance of mature Arabidopsis to P. syringae without directly inhibiting bacterial growth.
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Affiliation(s)
- Christine J Kempthorne
- Vineland Research and Innovation Centre, 4890 Victoria Ave North Box 4000, Vineland Station, Ontario, L0R 2E0, Canada; McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada; Brock University, 1812 Sir Isaac Brock Way, St Catharines, Ontario, L2S 3A1, Canada.
| | | | - Daniel C Wilson
- McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada
| | - James McNulty
- McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada
| | - Robin K Cameron
- McMaster University, 1280 Main St W, Hamilton, Ontario, L8S 4L8, Canada
| | - David K Liscombe
- Vineland Research and Innovation Centre, 4890 Victoria Ave North Box 4000, Vineland Station, Ontario, L0R 2E0, Canada; Brock University, 1812 Sir Isaac Brock Way, St Catharines, Ontario, L2S 3A1, Canada.
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Xia S, Ruan B, Rao Y, Cui Y, Zhang Q, Zeng D, Qian Q, Ren D. The ell1 mutation disrupts tryptophan metabolism and induces cell death. PLANT SIGNALING & BEHAVIOR 2021; 16:1905336. [PMID: 33769192 PMCID: PMC8143217 DOI: 10.1080/15592324.2021.1905336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 03/11/2021] [Accepted: 03/15/2021] [Indexed: 06/12/2023]
Abstract
Tryptophan metabolism pathways are important components of the plant immune system; for example, serotonin is derived from tryptophan, and plays a vital role in rice (Oryza sativa) innate immunity. Recently, we isolated a rice mutant, early lesion leaf 1 (ell1), which exhibits lesions. RNA-seq analysis revealed that KEGG pathways related to amino acid metabolism were significantly enriched in the transcripts differentially expressed in this mutant. Furthermore, measurements of free amino acid contents revealed the accumulated tryptophan of ell1 mutant. In addition, the transcript levels of genes related to tryptophan biosynthesis were significantly enhanced in the ell1 mutant. These results revealed that ELL1 plays a critical role in tryptophan metabolism. Based on these findings, it is revealed that loss of ELL1 function may disrupt tryptophan metabolism, thereby inducing cell death and forming lesions in rice.
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Affiliation(s)
- Saisai Xia
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
| | - Banpu Ruan
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, P. R. China
| | - Yuchun Rao
- College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua, P. R. China
| | - Yuanjiang Cui
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
| | - Qiang Zhang
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
| | - Dali Zeng
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
| | - Qian Qian
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
| | - Deyong Ren
- State Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou, P. R. China
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Katz E, Li JJ, Jaegle B, Ashkenazy H, Abrahams SR, Bagaza C, Holden S, Pires CJ, Angelovici R, Kliebenstein DJ. Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife 2021; 10:67784. [PMID: 33949309 PMCID: PMC8205490 DOI: 10.7554/elife.67784] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 05/02/2021] [Indexed: 12/03/2022] Open
Abstract
Plants produce diverse metabolites to cope with the challenges presented by complex and ever-changing environments. These challenges drive the diversification of specialized metabolites within and between plant species. However, we are just beginning to understand how frequently new alleles arise controlling specialized metabolite diversity and how the geographic distribution of these alleles may be structured by ecological and demographic pressures. Here, we measure the variation in specialized metabolites across a population of 797 natural Arabidopsis thaliana accessions. We show that a combination of geography, environmental parameters, demography and different genetic processes all combine to influence the specific chemotypes and their distribution. This showed that causal loci in specialized metabolism contain frequent independently generated alleles with patterns suggesting potential within-species convergence. This provides a new perspective about the complexity of the selective forces and mechanisms that shape the generation and distribution of allelic variation that may influence local adaptation. Since plants cannot move, they have evolved chemical defenses to help them respond to changes in their surroundings. For example, where animals run from predators, plants may produce toxins to put predators off. This approach is why plants are such a rich source of drugs, poisons, dyes and other useful substances. The chemicals plants produce are known as specialized metabolites, and they can change a lot between, and even within, plant species. The variety of specialized metabolites is a result of genetic changes and evolution over millions of years. Evolution is a slow process, yet plants are able to rapidly develop new specialized metabolites to protect them from new threats. Even different populations of the same species produce many distinct metabolites that help them survive in their surroundings. However, the factors that lead plants to produce new metabolites are not well understood, and it is not known how this affects genetic variation. To gain a better understanding of this process, Katz et al. studied 797 European variants of a common weed species called Arabidopsis thaliana, which is widely studied. The investigation found that many factors affect the range of specialized metabolites in each variant. These included local geography and environment, as well as genetics and population history (demography). Katz et al. revealed a pattern of relationships between the variants that could mirror their evolutionary history as the species spread and adapted to new locations. These results highlight the complex network of factors that affect plant evolution. Rapid diversification is key to plant survival in new and changing environments and has resulted in a wide range of specialized metabolites. As such they are of interest both for studying plant evolution and for understanding their ecology. Expanding similar work to more populations and other species will broaden the scope of our ability to understand how plants adapt to their surroundings.
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Affiliation(s)
- Ella Katz
- Department of Plant Sciences, University of California, Davis, Davis, United States
| | - Jia-Jie Li
- Department of Plant Sciences, University of California, Davis, Davis, United States
| | - Benjamin Jaegle
- Gregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Vienna, Austria
| | - Haim Ashkenazy
- Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany
| | - Shawn R Abrahams
- Division of Biological Sciences, Bond Life Sciences Center, University of Missouri, Columbia, United States
| | - Clement Bagaza
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, United States
| | - Samuel Holden
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, United States
| | - Chris J Pires
- Division of Biological Sciences, Bond Life Sciences Center, University of Missouri, Columbia, United States
| | - Ruthie Angelovici
- Division of Biological Sciences, Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, United States
| | - Daniel J Kliebenstein
- Department of Plant Sciences, University of California, Davis, Davis, United States.,DynaMo Center of Excellence, University of Copenhagen, Frederiksberg, Denmark
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Zhang J, Li R, Xu M, Hoffmann RI, Zhang Y, Liu B, Zhang M, Yang B, Li Z, Peters RJ. A (conditional) role for labdane-related diterpenoid natural products in rice stomatal closure. THE NEW PHYTOLOGIST 2021; 230:698-709. [PMID: 33458815 PMCID: PMC7969454 DOI: 10.1111/nph.17196] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 12/17/2020] [Indexed: 05/18/2023]
Abstract
Rice (Oryza sativa) is the staple food for over half the world's population. Drought stress imposes major constraints on rice yields. Intriguingly, labdane-related diterpenoid (LRD) phytoalexins in maize (Zea mays) affect drought tolerance, as indicated by the increased susceptibility of an insertion mutant of the class II diterpene cyclase ZmCPS2/An2 that initiates such biosynthesis. Rice also produces LRD phytoalexins, utilizing OsCPS2 and OsCPS4 to initiate a complex metabolic network. For genetic studies of rice LRD biosynthesis the fast-growing Kitaake cultivar was selected for targeted mutagenesis via CRISPR/Cas9, with an initial focus on OsCPS2 and OsCPS4. The resulting cps2 and cps4 knockout lines were further crossed to create a cps2x4 double mutant. Both CPSs also were overexpressed. Strikingly, all of the cv Kitaake cps mutants exhibit significantly increased susceptibility to drought, which was associated with reduced stomatal closure that was evident even under well-watered conditions. However, CPS overexpression did not increase drought resistance, and cps mutants in other cultivars did not alter susceptibility to drought, although these also exhibited lesser effects on LRD production. The results suggest that LRDs may act as a regulatory switch that triggers stomatal closure in rice, which might reflect the role of these openings in microbial entry.
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Affiliation(s)
- Juan Zhang
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Riqing Li
- Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, U.S.A
| | - Meimei Xu
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
| | - Rachel I. Hoffmann
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
| | - Yushi Zhang
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Bo Liu
- Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, U.S.A
| | - Mingcai Zhang
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Bing Yang
- Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, U.S.A
- Donald Danforth Plant Science Center, St. Louis, MO 63132, U.S.A
| | - Zhaohu Li
- State Key Laboratory of Physiology and Biochemistry, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
- College of Plant Science and Technology, Huazhong Agriculture University, Wuhan 430070, Hubei, China
| | - Reuben J. Peters
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, U.S.A
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Szilágyi Á, Bodor A, Tolvai N, Kovács KL, Bodai L, Wirth R, Bagi Z, Szepesi Á, Markó V, Kakuk B, Bounedjoum N, Rákhely G. A comparative analysis of biogas production from tomato bio-waste in mesophilic batch and continuous anaerobic digestion systems. PLoS One 2021; 16:e0248654. [PMID: 33730081 PMCID: PMC7968646 DOI: 10.1371/journal.pone.0248654] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/02/2021] [Indexed: 12/22/2022] Open
Abstract
Annually, agricultural activity produces an enormous amount of plant biomass by-product. Many studies have reported the biomethane potential of agro-industrial wastes, but only a few studies have investigated applying the substrates in both batch and continuous mode. Tomato is one of the most popular vegetables globally; its processing releases a substantial amount of by-product, such as stems and leaves. This study examined the BMP of tomato plant (Solanum lycopersicum Mill. L. cv. Alfred) waste. A comparative test revealed that the BMPs of corn stover, tomato waste,and their combination were approximately the same, around 280 mL methane/g Volatile Solid. In contrast, the relative biogas production decreased in the presence of tomato waste in a continuous mesophilic anaerobic digestion system; the daily biogas productions were 860 ± 80, 290 ± 50, and 570 ± 70 mL biogas/gVolatile Solid/day in the case of corn stover, tomato waste, and their mixture, respectively. The methane content of biogas was around 46–48%. The fermentation parameters of the continuous AD experiments were optimal in all cases; thus, TW might have an inhibitory effect on the microbial community. Tomato plant materials contain e.g. flavonoids, glycoalkaloids (such as tomatine and tomatidine), etc. known as antimicrobial and antifungal agents. The negative effect of tomatine on the biogas yield was confirmed in batch fermentation experiments. Metagenomic analysis revealed that the tomato plant waste caused significant rearrangements in the microbial communities in the continuously operated reactors. The results demonstrated that tomato waste could be a good mono-substrate in batch fermentations or a co-substrate with corn stover in a proper ratio in continuous anaerobic fermentations for biogas production. These results also point to the importance of running long-term continuous fermentations to test the suitability of a novel biomass substrate for industrial biogas production.
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Affiliation(s)
- Árpád Szilágyi
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Attila Bodor
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Environmental Sciences, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Centre, Szeged, Hungary
| | - Norbert Tolvai
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Kornél L. Kovács
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Centre, Szeged, Hungary
- Department of Oral Biology and Experimental Dental Research, University of Szeged, Szeged, Hungary
| | - László Bodai
- Department of Biochemistry and Molecular Biology, University of Szeged, Szeged, Hungary
| | - Roland Wirth
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Zoltán Bagi
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Ágnes Szepesi
- Department of Plant Biology, University of Szeged, Szeged, Hungary
| | - Viktória Markó
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Balázs Kakuk
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Naila Bounedjoum
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Gábor Rákhely
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Environmental Sciences, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Centre, Szeged, Hungary
- * E-mail:
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49
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Chen J, Ullah C, Giddings Vassão D, Reichelt M, Gershenzon J, Hammerbacher A. Sclerotinia sclerotiorum Infection Triggers Changes in Primary and Secondary Metabolism in Arabidopsis thaliana. PHYTOPATHOLOGY 2021; 111:559-569. [PMID: 32876531 DOI: 10.1094/phyto-04-20-0146-r] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Sclerotinia sclerotiorum is a devastating plant pathogen that causes substantial losses in various agricultural crops. Although plants have developed some well-known defense mechanisms against invasive fungi, much remains to be learned about plant responses to fungal pathogens. In this study, we investigated how S. sclerotiorum infection affects plant primary and secondary metabolism in the model plant Arabidopsis thaliana. Our results showed that soluble sugar and amino acid content changed significantly in A. thaliana leaves upon fungal colonization, with a decrease in sucrose and an increase in mannitol, attributed to fungal biosynthesis. Furthermore, the jasmonate signaling pathway was rapidly activated by S. sclerotiorum infection, and there was a striking accumulation of antifungal metabolites such as camalexin, p-coumaroyl agmatine, feruloyl agmatine, and Nδ-acetylornithine. On the other hand, the characteristic defense compounds of the Brassicaceae, the glucosinolates, were not induced in A. thaliana infected by S. sclerotiorum. Our study provides a better understanding of how A. thaliana primary and secondary metabolism is modified during infection by a fungal pathogen like S. sclerotiorum that has both hemibiotrophic and necrotrophic stages.
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Affiliation(s)
- J Chen
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - C Ullah
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - D Giddings Vassão
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - M Reichelt
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - J Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany
| | - A Hammerbacher
- Department of Zoology and Entomology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa
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50
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Abstract
Root rot diseases remain a major global threat to the productivity of agricultural crops. They are usually caused by more than one type of pathogen and are thus often referred to as a root rot complex. Fungal and oomycete species are the predominant participants in the complex, while bacteria and viruses are also known to cause root rot. Incorporating genetic resistance in cultivated crops is considered the most efficient and sustainable solution to counter root rot, however, resistance is often quantitative in nature. Several genetics studies in various crops have identified the quantitative trait loci associated with resistance. With access to whole genome sequences, the identity of the genes within the reported loci is becoming available. Several of the identified genes have been implicated in pathogen responses. However, it is becoming apparent that at the molecular level, each pathogen engages a unique set of proteins to either infest the host successfully or be defeated or contained in attempting so. In this review, a comprehensive summary of the genes and the potential mechanisms underlying resistance or susceptibility against the most investigated root rots of important agricultural crops is presented.
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