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Ye S, Huang Y, Ma T, Ma X, Li R, Shen J, Wen J. BnaABF3 and BnaMYB44 regulate the transcription of zeaxanthin epoxidase genes in carotenoid and abscisic acid biosynthesis. PLANT PHYSIOLOGY 2024; 195:2372-2388. [PMID: 38620011 DOI: 10.1093/plphys/kiae184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 02/25/2024] [Indexed: 04/17/2024]
Abstract
Zeaxanthin epoxidase (ZEP) is a key enzyme that catalyzes the conversion of zeaxanthin to violaxanthin in the carotenoid and abscisic acid (ABA) biosynthesis pathways. The rapeseed (Brassica napus) genome has 4 ZEP (BnaZEP) copies that are suspected to have undergone subfunctionalization, yet the 4 genes' underlying regulatory mechanisms remain unknown. Here, we genetically confirmed the functional divergence of the gene pairs BnaA09.ZEP/BnaC09.ZEP and BnaA07.ZEP/BnaC07.ZEP, which encode enzymes with tissue-specific roles in carotenoid and ABA biosynthesis in flowers and leaves, respectively. Molecular and transgenic experiments demonstrated that each BnaZEP pair is transcriptionally regulated via ABA-responsive element-binding factor 3 s (BnaABF3s) and BnaMYB44s as common and specific regulators, respectively. BnaABF3s directly bound to the promoters of all 4 BnaZEPs and activated their transcription, with overexpression of individual BnaABF3s inducing BnaZEP expression and ABA accumulation under drought stress. Conversely, loss of BnaABF3s function resulted in lower expression of several genes functioning in carotenoid and ABA metabolism and compromised drought tolerance. BnaMYB44s specifically targeted and repressed the expression of BnaA09.ZEP/BnaC09.ZEP but not BnaA07.ZEP/BnaC07.ZEP. Overexpression of BnaA07.MYB44 resulted in increased carotenoid content and an altered carotenoid profile in petals. Additionally, RNA-seq analysis indicated that BnaMYB44s functions as a repressor in phenylpropanoid and flavonoid biosynthesis. These findings provide clear evidence for the subfunctionalization of duplicated genes and contribute to our understanding of the complex regulatory network involved in carotenoid and ABA biosynthesis in B. napus.
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Affiliation(s)
- Shenhua Ye
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Hangzhou 311300, China
| | - Yingying Huang
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
| | - Tiantian Ma
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
| | - Xiaowei Ma
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
| | - Rihui Li
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
| | - Jinxiong Shen
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
| | - Jing Wen
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan 430070, China
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Weerawanich K, Sirikantaramas S. Unveiling phenylpropanoid regulation: the role of DzMYB activator and repressor in durian (Durio zibethinus) fruit. PLANT CELL REPORTS 2024; 43:179. [PMID: 38913159 DOI: 10.1007/s00299-024-03267-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Accepted: 06/13/2024] [Indexed: 06/25/2024]
Abstract
KEY MESSAGE DzMYB2 functions as an MYB activator, while DzMYB3 acts as an MYB repressor. They bind to promoters, interact with DzbHLH1, and influence phenolic contents, revealing their roles in phenylpropanoid regulation in durian pulps. Durian fruit has a high nutritional value attributed to its enriched bioactive compounds, including phenolics, carotenoids, and vitamins. While various transcription factors (TFs) regulate phenylpropanoid biosynthesis, MYB (v-myb avian myeloblastosis viral oncogene homolog) TFs have emerged as pivotal players in regulating key genes within this pathway. This study aimed to identify additional candidate MYB TFs from the transcriptome database of the Monthong cultivar at five developmental/postharvest ripening stages. Candidate transcriptional activators were discerned among MYBs upregulated during the ripe stage based on the positive correlation observed between flavonoid biosynthetic genes and flavonoid contents in ripe durian pulps. Conversely, MYBs downregulated during the ripe stage were considered candidate repressors. This study focused on a candidate MYB activator (DzMYB2) and a candidate MYB repressor (DzMYB3) for functional characterization. LC-MS/MS analysis using Nicotiana benthamiana leaves transiently expressing DzMYB2 revealed increased phenolic compound contents compared with those in leaves expressing green fluorescence protein controls, while those transiently expressing DzMYB3 showed decreased phenolic compound contents. Furthermore, it was demonstrated that DzMYB2 controls phenylpropanoid biosynthesis in durian by regulating the promoters of various biosynthetic genes, including phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS), chalcone isomerase (CHI), and dihydroflavonol reductase (DFR). Meanwhile, DzMYB3 regulates the promoters of PAL, 4-coumaroyl-CoA ligase (4CL), CHS, and CHI, resulting in the activation and repression of gene expression. Moreover, it was discovered that DzMYB2 and DzMYB3 could bind to another TF, DzbHLH1, in the regulation of flavonoid biosynthesis. These findings enhance our understanding of the pivotal role of MYB proteins in regulating the phenylpropanoid pathway in durian pulps.
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Affiliation(s)
- Kamonwan Weerawanich
- Center of Excellence in Molecular Crop, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Supaart Sirikantaramas
- Center of Excellence in Molecular Crop, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
- Omics Sciences and Bioinformatics Center, Chulalongkorn University, Bangkok, 10330, Thailand.
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Deng H, Hou Q, Wen Z, Yu R, Cao X, Shang C, Cai X, Qiao G. Chinese cherry CpMYB44-CpSPDS2 module regulates spermidine content and florescence in tobacco. PHYSIOLOGIA PLANTARUM 2024; 176:e14300. [PMID: 38629194 DOI: 10.1111/ppl.14300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 03/10/2024] [Accepted: 03/26/2024] [Indexed: 04/19/2024]
Abstract
The flower bud differentiation plays a crucial role in cherry yield and quality. In a preliminary study, we revealed the promotion of spermidine (Spd) in bud differentiation and quality. However, the molecular mechanism underlying Spd regulating cherry bud differentiation remains unclear. To address this research gap, we cloned CpSPDS2, a gene that encodes Spd synthase and is highly expressed in whole flowers and pistils of the Chinese cherry (cv. 'Manaohong'). Furthermore, an overexpression vector with this gene was constructed to transform tobacco plants. The findings demonstrated that transgenic lines exhibited higher Spd content, an earlier flowering time by 6 d, and more lateral buds and flowers than wild-type lines. Additionally, yeast one-hybrid assays and two-luciferase experiments confirmed that the R2R3-MYB transcription factor (CpMYB44) directly binds to and activates the CpSPDS2 promoter transcription. It is indicated that CpMYB44 promotes Spd accumulation via regulating CpSPDS2 expression, thus accelerating the flower growth. This research provides a basis for resolving the molecular mechanism of CpSPDS2 involved in cherry bud differentiation.
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Affiliation(s)
- Hong Deng
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Qiandong Hou
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Zhuang Wen
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Runrun Yu
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Xuejiao Cao
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Chunqiong Shang
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Xiaowei Cai
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
| | - Guang Qiao
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Guizhou Key Laboratory of Agricultural Bioengineering, Institute of Agro-bioengineering /College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, China
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Xu D, Tang W, Ma Y, Wang X, Yang Y, Wang X, Xie L, Huang S, Qin T, Tang W, Xu Z, Li L, Tang Y, Chen M, Ma Y. Arabidopsis G-protein β subunit AGB1 represses abscisic acid signaling via attenuation of the MPK3-VIP1 phosphorylation cascade. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1615-1632. [PMID: 37988280 DOI: 10.1093/jxb/erad464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 11/20/2023] [Indexed: 11/23/2023]
Abstract
Heterotrimeric G proteins play key roles in cellular processes. Although phenotypic analyses of Arabidopsis Gβ (AGB1) mutants have implicated G proteins in abscisic acid (ABA) signaling, the AGB1-mediated modules involved in ABA responses remain unclear. We found that a partial AGB1 protein was localized to the nucleus where it interacted with ABA-activated VirE2-interacting protein 1 (VIP1) and mitogen-activated protein kinase 3 (MPK3). AGB1 acts as an upstream negative regulator of VIP1 activity by initiating responses to ABA and drought stress, and VIP1 regulates the ABA signaling pathway in an MPK3-dependent manner in Arabidopsis. AGB1 outcompeted VIP1 for interaction with the C-terminus of MPK3, and prevented phosphorylation of VIP1 by MPK3. Importantly, ABA treatment reduced AGB1 expression in the wild type, but increased in vip1 and mpk3 mutants. VIP1 associates with ABA response elements present in the AGB1 promoter, forming a negative feedback regulatory loop. Thus, our study defines a new mechanism for fine-tuning ABA signaling through the interplay between AGB1 and MPK3-VIP1. Furthermore, it suggests a common G protein mechanism to receive and transduce signals from the external environment.
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Affiliation(s)
- Dongbei Xu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China
| | - Wensi Tang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Yanan Ma
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Xia Wang
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China
| | - Yanzhi Yang
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China
| | - Xiaoting Wang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Lina Xie
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Suo Huang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Tengfei Qin
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Weilin Tang
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China
| | - Zhaoshi Xu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Lei Li
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China
| | - Yimiao Tang
- Institute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Ming Chen
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
| | - Youzhi Ma
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing 100081, China
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Wang Z, Li X, Yao X, Ma J, Lu K, An Y, Sun Z, Wang Q, Zhou M, Qin L, Zhang L, Zou S, Chen L, Song C, Dong H, Zhang M, Chen X. MYB44 regulates PTI by promoting the expression of EIN2 and MPK3/6 in Arabidopsis. PLANT COMMUNICATIONS 2023; 4:100628. [PMID: 37221824 PMCID: PMC10721452 DOI: 10.1016/j.xplc.2023.100628] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 04/03/2023] [Accepted: 05/18/2023] [Indexed: 05/25/2023]
Abstract
The plant signaling pathway that regulates pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) involves mitogen-activated protein kinase (MAPK) cascades that comprise sequential activation of several protein kinases and the ensuing phosphorylation of MAPKs, which activate transcription factors (TFs) to promote downstream defense responses. To identify plant TFs that regulate MAPKs, we investigated TF-defective mutants of Arabidopsis thaliana and identified MYB44 as an essential constituent of the PTI pathway. MYB44 confers resistance against the bacterial pathogen Pseudomonas syringae by cooperating with MPK3 and MPK6. Under PAMP treatment, MYB44 binds to the promoters of MPK3 and MPK6 to activate their expression, leading to phosphorylation of MPK3 and MPK6 proteins. In turn, phosphorylated MPK3 and MPK6 phosphorylate MYB44 in a functionally redundant manner, thus enabling MYB44 to activate MPK3 and MPK6 expression and further activate downstream defense responses. Activation of defense responses has also been attributed to activation of EIN2 transcription by MYB44, which has previously been shown to affect PAMP recognition and PTI development. AtMYB44 thus functions as an integral component of the PTI pathway by connecting transcriptional and posttranscriptional regulation of the MPK3/6 cascade.
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Affiliation(s)
- Zuodong Wang
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Xiaoxu Li
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Xiaohui Yao
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China; Qilu College, Shandong Agricultural University, Taian 271018, China
| | - Jinbiao Ma
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Kai Lu
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Yuyan An
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China
| | - Zhimao Sun
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China
| | - Qian Wang
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Miao Zhou
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Lina Qin
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Liyuan Zhang
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Shenshen Zou
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Lei Chen
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China
| | - Congfeng Song
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Hansong Dong
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China; Qilu College, Shandong Agricultural University, Taian 271018, China.
| | - Meixiang Zhang
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China.
| | - Xiaochen Chen
- College of Plant Protection, Shandong Agricultural University, Taian 271018, China.
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Ghorbel M, Haddaji N, Feki K, Tounsi S, Chihaoui M, Alghamdi A, Mseddi K, Brini F. Identification of a putative kinase interacting domain in the durum wheat catalase 1 (TdCAT1) protein. Heliyon 2023; 9:e18916. [PMID: 37609422 PMCID: PMC10440534 DOI: 10.1016/j.heliyon.2023.e18916] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 07/31/2023] [Accepted: 08/02/2023] [Indexed: 08/24/2023] Open
Abstract
Catalases are crucial antioxidant enzymes that regulate plants responses to different biotic and abiotic stresses. It has been previously shown that the activities of durum wheat catalase proteins (TdCAT1) were stimulated in the presence of divalent cations Mn2+, Mg2+, Fe2+, Zn2+, and Ca2+. In addition, TdCAT1s can interact with calmodulins in calcium-independent manner, and this interaction stimulates its catalytic activity in a calcium-dependent manner. Moreover, this activity is further enhanced by Mn2+ cations. The current study showed that wheat catalase presents different phosphorylation targets. Besides, we demonstrated that catalase is able to interact with Mitogen Activated Proteins kinases via a conserved domain. This interaction activates wheat catalase independently of its phosphorylation status but is more promoted by Mn2+, Fe2+ and Ca2+ divalent cations. Interestingly, we have demonstrated that durum wheat catalase activity is differentially regulated by Mitogen Activated Proteins kinases and Calmodulins in the presence of calcium. Moreover, the V0 of the reaction increase gradually following the increasing quantities of Mn2+ divalent cations. Such results have never been described before and suggest i) complex regulatory mechanisms exerted on wheat catalase, ii) divalent cations (Mn2+; Mg2+; Ca2+ and Fe2+) act as key cofactors in these regulatory mechanisms.
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Affiliation(s)
- Mouna Ghorbel
- Department of Biology, College of Sciences, University of Hail, P.O. Box 2440, Ha'il City, 81451, Saudi Arabia
| | - Najla Haddaji
- Department of Biology, College of Sciences, University of Hail, P.O. Box 2440, Ha'il City, 81451, Saudi Arabia
| | - Kaouthar Feki
- Laboratory of Biotechnology and Plant Improvement, Center of Biotechnology of Sfax, P.O. Box 1177, Sfax, 3018, Tunisia
| | - Sana Tounsi
- Laboratory of Biotechnology and Plant Improvement, Center of Biotechnology of Sfax, P.O. Box 1177, Sfax, 3018, Tunisia
| | - Mejda Chihaoui
- Computer Science Departement, Applied College- University of Ha'il, P.O. Box 2440, Ha'il City, 81451, Saudi Arabia
| | - Ahmad Alghamdi
- Department of Biology, College of Sciences, University of Hail, P.O. Box 2440, Ha'il City, 81451, Saudi Arabia
| | - Khalil Mseddi
- Department of Biology, Faculty of Science of Sfax, University of Sfax, Sfax, 3000, Tunisia
| | - Faiçal Brini
- Laboratory of Biotechnology and Plant Improvement, Center of Biotechnology of Sfax, P.O. Box 1177, Sfax, 3018, Tunisia
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Gao G, Yang F, Wang C, Duan X, Li M, Ma Y, Wang F, Qi H. The transcription factor CmERFI-2 represses CmMYB44 expression to increase sucrose levels in oriental melon fruit. PLANT PHYSIOLOGY 2023; 192:1378-1395. [PMID: 36938625 PMCID: PMC10231561 DOI: 10.1093/plphys/kiad155] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 11/29/2022] [Accepted: 11/29/2022] [Indexed: 06/01/2023]
Abstract
Soluble sugar accumulation in fruit ripening determines fleshy fruit quality. However, the molecular mechanism for this process is not yet understood. Here, we showed a transcriptional repressor, CmMYB44 regulates sucrose accumulation and ethylene synthesis in oriental melon (Cucumis. melo var. makuwa Makino) fruit. Overexpressing CmMYB44 suppressed sucrose accumulation and ethylene production. Furthermore, CmMYB44 repressed the transcriptional activation of CmSPS1 (sucrose phosphate synthase 1) and CmACO1 (ACC oxidase 1), two key genes in sucrose and ethylene accumulation, respectively. During the later stages of fruit ripening, the repressive effect of CmMYB44 on CmSPS1 and CmACO1 could be released by overexpressing CmERFI-2 (ethylene response factor I-2) and exogenous ethylene in "HS" fruit (high sucrose accumulation fruit). CmERFI-2 acted upstream of CmMYB44 as a repressor by directly binding the CmMYB44 promoter region, indirectly stimulating the expression level of CmSPS1 and CmACO1. Taken together, we provided a molecular regulatory pathway mediated by CmMYB44, which determines the degree of sucrose and ethylene accumulation in oriental melon fruit and sheds light on transcriptional responses triggered by ethylene sensing that enable the process of fruit ripening.
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Affiliation(s)
- Ge Gao
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province/National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Fan Yang
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province/National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Cheng Wang
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province/National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Xiaoyu Duan
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province/National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Meng Li
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province/National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Yue Ma
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
| | - Feng Wang
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China
| | - Hongyan Qi
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province/National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
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Tao J, Dong F, Wang Y, Chen H, Tang M. Arbuscular mycorrhizal fungi enhance photosynthesis and drought tolerance by regulating MAPK genes expressions of Populus simonii × P. nigra. PHYSIOLOGIA PLANTARUM 2022; 174:e13829. [PMID: 36437546 DOI: 10.1111/ppl.13829] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 10/29/2022] [Accepted: 11/16/2022] [Indexed: 06/16/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) promote plants to absorb more water and nutrients and improve their stress resistance. As the main signal transducer, the mitogen-activated protein kinase (MAPK) cascade plays a vital role in drought stress. However, how the MAPK family genes of mycorrhizal plants respond to stress is still not clear. Our study analyzed physiological indexes and expression profiles of MAPK family genes of Populus simonii × P. nigra under two inoculation treatments (inoculated with or without Rhizophagus irregularis) and two water conditions (well-watered or drought stress). The results showed that the stronger photosynthesis of mycorrhizal plants may be mediated by MAPK genes induced by AMF. Mycorrhizal plants showed lower oxidative damage and drought sensitivity. Mycorrhiza downregulated the expression of PsnMAPK7-2, PsnMAPK16-1, PsnMAPK19-2, and PsnMAPK20-2 which negatively regulate drought tolerance and induced specific PsnMAPKs in roots which activate transcription factors to regulate downstream gene expressions, enhancing drought tolerance. This is the first time to identify part of the MAPK gene family of P. simonii × P. nigra at the genome level and study MAPK genes in mycorrhizal forest trees. This is helpful to understand the function of the MAPK gene family in response to drought of mycorrhizal plants and lays a foundation for afforestation by using mycorrhizal saplings.
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Affiliation(s)
- Jing Tao
- College of Forestry, Northwest A&F University, Yangling, Shaanxi, China
| | - Fengxin Dong
- College of Forestry, Northwest A&F University, Yangling, Shaanxi, China
| | - Yihan Wang
- College of Forestry, Northwest A&F University, Yangling, Shaanxi, China
| | - Hui Chen
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, Guangdong, China
| | - Ming Tang
- College of Forestry, Northwest A&F University, Yangling, Shaanxi, China
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, Guangdong, China
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Han X, Wang Z, Shi L, Zhu J, Shi L, Ren A, Zhao M. Phospholipase D and phosphatidic acid mediate regulation in the biosynthesis of spermidine and ganoderic acids by activating
GlMyb
in
Ganoderma lucidum
under heat stress. Environ Microbiol 2022; 24:5345-5361. [DOI: 10.1111/1462-2920.16211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 09/14/2022] [Indexed: 11/30/2022]
Affiliation(s)
- Xiaofei Han
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
| | - Zi Wang
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
| | - Lingyan Shi
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
| | - Jing Zhu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
| | - Liang Shi
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
| | - Ang Ren
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
| | - Mingwen Zhao
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture; Microbiology Department, College of Life Sciences Nanjing Agricultural University Nanjing Jiangsu China
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Wang S, Wu H, Cao X, Fan W, Li C, Zhao H, Wu Q. Tartary buckwheat FtMYB30 transcription factor improves the salt/drought tolerance of transgenic Arabidopsis in an ABA-dependent manner. PHYSIOLOGIA PLANTARUM 2022; 174:e13781. [PMID: 36121384 DOI: 10.1111/ppl.13781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 08/23/2022] [Accepted: 09/16/2022] [Indexed: 06/15/2023]
Abstract
Drought and high salinity affect plant growth, development, yield, and quality. MYB transcription factors (TFs) in plants play an indispensable regulatory role in resisting adverse stress. In this study, screening and functional validation of the TF FtMYB30, which can respond extensively to abiotic stress and abscisic acid (ABA), was achieved in Tartary buckwheat. FtMYB30, one of the SG22 (sub-group 22) family of R2R3-MYB TFs, localized in the nucleus and had transcriptional activation activity. Under drought and salt stress, FtMYB30 overexpression reduced the oxidative damage in transgenic plants by increasing the activity of proline content and antioxidant enzymes and significantly upregulate the expression of RD29A, RD29B, and Cu/ZnSOD, thereby enhancing drought/salt tolerance in transgenic Arabidopsis. Additionally, overexpression of FtMYB30 can reduce the sensitivity of transgenic plants to ABA. Moreover, AtRCAR1/2/3 and AtMPK6 directly interact with the FtMYB30 TF, possibly through the crosstalk between MAPKs (mitogen-activated protein kinases) and the ABA signaling pathway. Taken together, these results suggest that FtMYB30, as a positive regulator, mediates plant tolerance to salt and drought through an ABA-dependent signaling pathway.
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Affiliation(s)
- Shuang Wang
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
| | - Huala Wu
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
| | - Xinxian Cao
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
| | - Wenjing Fan
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
| | - Chenglei Li
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
| | - Haixia Zhao
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
| | - Qi Wu
- College of Life Science, Sichuan Agricultural University, Ya'an, Sichuan, China
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11
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Gao H, Jiang L, Du B, Ning B, Ding X, Zhang C, Song B, Liu S, Zhao M, Zhao Y, Rong T, Liu D, Wu J, Xu P, Zhang S. GmMKK4-activated GmMPK6 stimulates GmERF113 to trigger resistance to Phytophthora sojae in soybean. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:473-495. [PMID: 35562858 DOI: 10.1111/tpj.15809] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 05/09/2022] [Accepted: 05/10/2022] [Indexed: 06/15/2023]
Abstract
Phytophthora root and stem rot is a worldwide soybean (Glycine max) disease caused by the soil-borne pathogen Phytophthora sojae. This disease is devastating to soybean production, so improvement of resistance to P. sojae is a major target in soybean breeding. Mitogen-activated protein kinase (MAPK) cascades are important signaling modules that convert environmental stimuli into cellular responses. Compared with extensive studies in Arabidopsis, the molecular mechanism of MAPK cascades in soybean disease resistance is barely elucidated. In this work, we found that the gene expression of mitogen-activated protein kinase 6 (GmMPK6) was potently induced by P. sojae infection in the disease-resistant soybean cultivar 'Suinong 10'. Overexpression of GmMPK6 in soybean resulted in enhanced resistance to P. sojae and silencing of GmMPK6 led to the opposite phenotype. In our attempt to dissect the role of GmMPK6 in soybean resistance to phytophthora disease, we found that MAPK kinase 4 (GmMKK4) and the ERF transcription factor GmERF113 physically interact with GmMPK6, and we determined that GmMKK4 could phosphorylate and activate GmMPK6, which could subsequently phosphorylate GmERF113 upon P. sojae infection, suggesting that P. sojae can stimulate the GmMKK4-GmMPK6-GmERF113 signaling pathway in soybean. Moreover, phosphorylation of GmERF113 by the GmMKK4-GmMPK6 module promoted GmERF113 stability, nuclear localization and transcriptional activity, which significantly enhanced expression of the defense-related genes GmPR1 and GmPR10-1 and hence improved disease resistance of the transgenic soybean seedlings. In all, our data reveal that the GmMKK4-GmMPK6-GmERF113 cascade triggers resistance to P. sojae in soybean and shed light on functions of MAPK kinases in plant disease resistance.
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Affiliation(s)
- Hong Gao
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Liangyu Jiang
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
- Jilin Agricultural University, Changchun, 130118, China
| | - Banghan Du
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Bin Ning
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Xiaodong Ding
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Chuanzhong Zhang
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Bo Song
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Shanshan Liu
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Ming Zhao
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Yuxin Zhao
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Tianyu Rong
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Dongxue Liu
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Junjiang Wu
- Soybean Research Institute of Heilongjiang Academy of Agricultural Sciences/Key Laboratory of Soybean Cultivation of Ministry of Agriculture P. R. China, Harbin, 150086, China
| | - Pengfei Xu
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
| | - Shuzhen Zhang
- Soybean Research Institute, Northeast Agricultural University/Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin, 150030, China
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12
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Qin B, Fan SL, Yu HY, Lu YX, Wang LF. HbMYB44, a Rubber Tree MYB Transcription Factor With Versatile Functions in Modulating Multiple Phytohormone Signaling and Abiotic Stress Responses. FRONTIERS IN PLANT SCIENCE 2022; 13:893896. [PMID: 35720610 PMCID: PMC9201644 DOI: 10.3389/fpls.2022.893896] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
The vital roles of R2R3-MYB transcription factors (TFs) in regulating stress response and phytohormone signaling have been thoroughly studied in numerous plant species, but the functions of these TFs in rubber tree are poorly understood. Rubber tree is the most important source of natural rubber but often suffers from various abiotic and biotic stresses that cause severe yield losses each year. In this study, we reported a novel MYB44 gene in rubber tree (named HbMYB44) and revealed its biological function. HbMYB44 was highly similar to AtMYB44 and clustered into subgroup 22. Transient expression indicated that HbMYB44 is a nuclear localized protein and displays transactivation activity at the C-terminus. HbMYB44 was ubiquitously expressed in rubber tree, and its expression was strongly induced by multiple phytohormones, drought stress, wounding, and H2O2 treatments. Furthermore, overexpression of HbMYB44 in Arabidopsis (OE) demonstrated that OE plants significantly enhanced stress tolerance, i.e., salt stress, osmotic stress, and drought stress. Additionally, HbMYB44 promoted recovery from root growth inhibition of OE plants caused by exogenous phytohormones (including abscisic acid, methyl jasmonic acid, gibberellic acid 3, and salicylic acid), but the opposite effect was present in response to ethephon. Interestingly, HbMYB44 increased the expression of its homologous genes and interacting protein-encoding genes in OE plants. Overall, HbMYB44 plays versatile functions in modulating multiple phytohormone signaling pathways and stress tolerance.
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Affiliation(s)
- Bi Qin
- Key Laboratory of Biology and Genetic Resources of Rubber Tree, Ministry of Agriculture and Rural Affairs, Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Song-Le Fan
- Institute of Tropical Crops, Hainan University, Haikou, China
| | - Hai-Yang Yu
- Institute of Tropical Crops, Hainan University, Haikou, China
| | - Yan-Xi Lu
- Key Laboratory of Biology and Genetic Resources of Rubber Tree, Ministry of Agriculture and Rural Affairs, Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Li-Feng Wang
- Institute of Tropical Crops, Hainan University, Haikou, China
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Sharifi Alishah M, Darvishzadeh R, Ahmadabadi M, Piri Kashtiban Y, Hasanpur K. Identification of differentially expressed genes in salt-tolerant oilseed sunflower (Helianthus annuus L.) genotype by RNA sequencing. Mol Biol Rep 2022; 49:3583-3596. [PMID: 35119610 DOI: 10.1007/s11033-022-07198-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 01/26/2022] [Indexed: 11/29/2022]
Abstract
BACKGROUND Sunflower (Helianthus annuus L.) is widely planted as an oilseed crop worldwide. Salt stress is one of the major abiotic stresses that negatively affect crop growth and productivity. To counter the negative impact of salt stress, plants have developed avoidance and tolerance mechanisms. Developing salt-tolerant genotypes requires understanding the molecular basis of adaptive mechanisms in depth. Although using model plants i.e., Arabidopsis has improved our understanding of salt tolerant mechanisms, the relative impotence and regulation mechanisms vary among plant species due to differences in genetic and metabolic backgrounds. On the other hand, sunflower is a highly polymorphic plant due to its cross-pollinated behavior which provides different salt-tolerant genotypes available for comparative analyses. METHODS AND RESULTS In order to gain a better view of molecular mechanisms involved in salt tolerance in sunflower, RNA sequencing analysis was realized by evaluating a tolerant genotype (AS5305) with two biological replicates under control and salt stress conditions in a controlled environment. Salinity stress was applied from NaCl resource at the 8-leaf stage and samplings were done at 24 h post salt stress application. Sequencing data were analyzed using tuxedo software suite. Blast2GO software and the KEGG database were used to identify the functional tasks of each of the assembled transcripts. Analysis of genes with robust expression (i.e., with FPKM > 1 in at least one sample) revealed a total of 121 significantly expressed genes between the saline-stressed and control samples. The differential expression of 11 genes was confirmed by real-time PCR. In the following, the cDNA of MYB44 as one of the selected candidate genes involved in salt tolerance was isolated, cloned, and sequenced for comparison. CONCLUSIONS Overall, the results of the current study may pave the way for the accurate selection of genes involved in salinity to be used in molecular-genetics-assisted breeding programs. In addition, making use of the identified genes may help relieve the damages arising from the salt stress in sunflowers.
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Affiliation(s)
- Masoumeh Sharifi Alishah
- Department of Plant Production and Genetics, Faculty of Agriculture, Urmia University, Urmia, Iran
| | - Reza Darvishzadeh
- Department of Plant Production and Genetics, Faculty of Agriculture, Urmia University, Urmia, Iran. .,Department of Agricultural Biotechnology, Institute of Biotechnology, Urmia University, Urmia, Iran.
| | - Mohammad Ahmadabadi
- Department Agricultural Biotechnology, Faculty of Agriculture, Azarbaijan Shahid Madani University, Tabriz, Iran
| | - Yaser Piri Kashtiban
- Department of Agricultural Biotechnology, National Center of Genetic Engineering, Tehran, Iran
| | - Karim Hasanpur
- Department of Animal Science, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
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14
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Han X, Wei X, Lu W, Wu Q, Mao L, Luo Z. Transcriptional regulation of KCS gene by bZIP29 and MYB70 transcription factors during ABA-stimulated wound suberization of kiwifruit (Actinidia deliciosa). BMC PLANT BIOLOGY 2022; 22:23. [PMID: 34998386 PMCID: PMC8742354 DOI: 10.1186/s12870-021-03407-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 12/09/2021] [Indexed: 05/05/2023]
Abstract
BACKGROUND Our previous study has demonstrated that the transcription of AchnKCS involved in suberin biosynthesis was up-regulated by exogenous abscisic acid (ABA) during the wound suberization of kiwifruit, but the regulatory mechanism has not been fully elucidated. RESULTS Through subcellular localization analysis in this work, AchnbZIP29 and AchnMYB70 transcription factors were observed to be localized in the nucleus. Yeast one-hybrid and dual-luciferase assay proved the transcriptional activation of AchnMYB70 and transcriptional suppression of AchnbZIP29 on AchnKCS promoter. Furthermore, the transcription level of AchnMYB70 was enhanced by ABA during wound suberization of kiwifruit, but AchnbZIP29 transcription was reduced by ABA. CONCLUSIONS Therefore, it was believed that ABA enhanced the transcriptional activation of AchnMYB70 on AchnKCS by increasing AchnMYB70 expression. On the contrary, ABA relieved the inhibitory effect of AchnbZIP29 on transcription of AchnKCS by inhibiting AchnbZIP29 expression. These results gave further insight into the molecular regulatory network of ABA in wound suberization of kiwifruit.
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Affiliation(s)
- Xueyuan Han
- School of Life Science, Shaoxing University, Shaoxing, 312000, Zhejiang Province, China
- College of Biosystems Engineering and Food Science, Zhejiang Key Laboratory of Agro-Food Processing, Key Laboratory of Agro-Products Postharvest Handling of Ministry of Agriculture and Rural Affairs, Zhejiang University, Hangzhou, 310058, China
| | - Xiaopeng Wei
- College of Biosystems Engineering and Food Science, Zhejiang Key Laboratory of Agro-Food Processing, Key Laboratory of Agro-Products Postharvest Handling of Ministry of Agriculture and Rural Affairs, Zhejiang University, Hangzhou, 310058, China
- College of Food and Bioengineering, Zhengzhou University of Light Industry, Zhengzhou, 450002, Henan, China
| | - Wenjing Lu
- College of Biosystems Engineering and Food Science, Zhejiang Key Laboratory of Agro-Food Processing, Key Laboratory of Agro-Products Postharvest Handling of Ministry of Agriculture and Rural Affairs, Zhejiang University, Hangzhou, 310058, China
- Institute of Food Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Qiong Wu
- College of Food Science and Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Linchun Mao
- College of Biosystems Engineering and Food Science, Zhejiang Key Laboratory of Agro-Food Processing, Key Laboratory of Agro-Products Postharvest Handling of Ministry of Agriculture and Rural Affairs, Zhejiang University, Hangzhou, 310058, China.
- Ningbo Research Institute, Zhejiang University, Ningbo, 315100, China.
| | - Zisheng Luo
- College of Biosystems Engineering and Food Science, Zhejiang Key Laboratory of Agro-Food Processing, Key Laboratory of Agro-Products Postharvest Handling of Ministry of Agriculture and Rural Affairs, Zhejiang University, Hangzhou, 310058, China
- Ningbo Research Institute, Zhejiang University, Ningbo, 315100, China
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Lu Z, Zhu X, Ye Y, Fu H, Mao J. PP2A protects podocytes against Adriamycin-induced injury and epithelial-to-mesenchymal transition via suppressing JIP4/p38-MAPK pathway. Cytotechnology 2021; 73:697-713. [PMID: 34629746 DOI: 10.1007/s10616-021-00484-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 06/21/2021] [Indexed: 02/06/2023] Open
Abstract
Protein phosphatase 2A (PP2A) is one of the major protein serine/threonine phosphatases (PPPs) with regulatory effects on several cellular processes, but its role and function in Adriamycin (ADR)-treated podocytes injury needs to be further explored. Mice podocytes were treated with ADR and PP2A inhibitor (okadaic acid, OA). After transfection, cell apoptosis was detected by flow cytometry. Expressions of podocytes injury-, apoptosis- and epithelial-to-mesenchymal transition (EMT)- and JNK-interacting protein 4/p38-Mitogen-Activated Protein Kinase (JIP4/p38-MAPK) pathway-related factors were measured using quantitative real-time polymerase chain reaction (qRT-PCR) and Western blot as needed. Interaction between PP2A and JIP4/MAPK pathway was confirmed using co-immunoprecipitation (Co-Ip) assay. In podocytes, ADR inhibited PP2A, Nephrin and Wilms' tumor (WT) 1 expressions yet upregulated apoptosis and Desmin expression, and suppressing PP2A expressionenhanced the effects. PP2A overexpression reversed the effects of ADR on PP2A and podocyte injury-related factors expressions and apoptosis of podocytes. JIP4 was the candidate gene interacting with both PP2A and p38-MAPK pathway, and PP2A overexpression alleviated the effects of ADR on p38-MAPK pathway-related factors expressions. Additionally, in ADR-treated podocytes, PP2A suppression enhanced the effects of ADR, yet silencing of JIP4 reversed the effects of PP2A suppression on regulating p38-MAPK pathway-, apoptosis- and EMT-related factors expressions and apoptosis, with upregulations of B-cell lymphoma-2 (Bcl-2) and E-cadherin and down-regulations of Bcl-2 associated protein X (Bax), cleaved (C)-casapse-3, N-cadherin, Vimentin and Snail. PP2A protects ADR-treated podocytes against injury and EMT by suppressing JIP4/p38-MAPK pathway, showing their interaction in podocytes.
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Affiliation(s)
- Zhihong Lu
- Department of Nephrology, The Children's Hospital, Zhejiang University School of Medicine, No. 3333 Binsheng Road, Binjiang District, Hangzhou, 310052 Zhejiang China
| | - Xiujuan Zhu
- Department of Nephrology, The Children's Hospital, Zhejiang University School of Medicine, No. 3333 Binsheng Road, Binjiang District, Hangzhou, 310052 Zhejiang China
| | - Yuhong Ye
- Department of Nephrology, The Children's Hospital, Zhejiang University School of Medicine, No. 3333 Binsheng Road, Binjiang District, Hangzhou, 310052 Zhejiang China
| | - Haidong Fu
- Department of Nephrology, The Children's Hospital, Zhejiang University School of Medicine, No. 3333 Binsheng Road, Binjiang District, Hangzhou, 310052 Zhejiang China
| | - Jianhua Mao
- Department of Nephrology, The Children's Hospital, Zhejiang University School of Medicine, No. 3333 Binsheng Road, Binjiang District, Hangzhou, 310052 Zhejiang China
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Zhang T, Cui Z, Li Y, Kang Y, Song X, Wang J, Zhou Y. Genome-Wide Identification and Expression Analysis of MYB Transcription Factor Superfamily in Dendrobium catenatum. Front Genet 2021; 12:714696. [PMID: 34512725 PMCID: PMC8427673 DOI: 10.3389/fgene.2021.714696] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Accepted: 06/28/2021] [Indexed: 12/17/2022] Open
Abstract
Dendrobium catenatum is an important traditional Chinese medicine and naturally grows on tree trunks and cliffs, where it can encounter diverse environmental stimuli. MYB transcription factors are widely involved in response to abiotic stresses. However, the MYB gene family has not yet been systematically cataloged in D. catenatum. In this study, a total of 133 MYB proteins were identified in D. catenatum, including 32 MYB-related, 99 R2R3-MYB, 1 3R-MYB, and 1 4R-MYB proteins. Phylogenetic relationships, conserved motifs, gene structures, and expression profiles in response to abiotic stresses were then analyzed. Phylogenetic analysis revealed MYB proteins in D. catenatum could be divided into 14 subgroups, which was supported by the conserved motif compositions and gene structures. Differential DcMYB gene expression and specific responses were analyzed under drought, heat, cold, and salt stresses using RNA-seq and validated by qRT-PCR. Forty-two MYB genes were differentially screened following exposure to abiotic stresses. Five, 12, 11, and 14 genes were specifically expressed in response to drought, heat, cold, and salt stress, respectively. This study identified candidate MYB genes with possible roles in abiotic tolerance and established a theoretical foundation for molecular breeding of D. catenatum.
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Affiliation(s)
- Tingting Zhang
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, School of Horticulture, Hainan University, Haikou, China
| | - Zheng Cui
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, School of Horticulture, Hainan University, Haikou, China
| | - Yuxin Li
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, School of Horticulture, Hainan University, Haikou, China
| | - Yuqian Kang
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, School of Horticulture, Hainan University, Haikou, China
| | - Xiqiang Song
- Key Laboratory of Ministry of Education for Genetics and Germplasm Innovation of Tropical Special Trees and Ornamental Plants, Key Laboratory of Germplasm Resources Biology of Tropical Special Ornamental Plants of Hainan Province, School of Forestry, Hainan University, Haikou, China
| | - Jian Wang
- Key Laboratory of Ministry of Education for Genetics and Germplasm Innovation of Tropical Special Trees and Ornamental Plants, Key Laboratory of Germplasm Resources Biology of Tropical Special Ornamental Plants of Hainan Province, School of Forestry, Hainan University, Haikou, China
| | - Yang Zhou
- Key Laboratory for Quality Regulation of Tropical Horticultural Crops of Hainan Province, School of Horticulture, Hainan University, Haikou, China
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Hongyan X, Zhanling X, Hongchen J, Jing G, Qing M, Yuan Z, Xiaofang W. Transcriptome Analysis and Expression Profiling of Molecular Responses to Cd Toxicity in Morchella spongiola. MYCOBIOLOGY 2021; 49:421-433. [PMID: 34512085 PMCID: PMC8409932 DOI: 10.1080/12298093.2021.1937882] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 05/09/2021] [Accepted: 05/28/2021] [Indexed: 05/25/2023]
Abstract
Morchella is a genus of fungi with the ability to concentrate Cd both in the fruit-body and mycelium. However, the molecular mechanisms conferring resistance to Cd stress in Morchella are unknown. Here, RNA-based transcriptomic sequencing was used to identify the genes and pathways involved in Cd tolerance in Morchella spongiola. 7444 differentially expressed genes (DEGs) were identified by cultivating M. spongiola in media containing 0.15, 0.90, or 1.50 mg/L Cd2+. The DEGs were divided into six sub-clusters based on their global expression profiles. GO enrichment analysis indicated that numerous DEGs were associated with catalytic activity, cell cycle control, and the ribosome. KEGG enrichment analysis showed that the main pathways under Cd stress were MAPK signaling, oxidative phosphorylation, pyruvate metabolism, and propanoate metabolism. In addition, several DEGs encoding ion transporters, enzymatic/non-enzymatic antioxidants, and transcription factors were identified. Based on these results, a preliminary gene regulatory network was firstly proposed to illustrate the molecular mechanisms of Cd detoxification in M. spongiola. These results provide valuable insights into the Cd tolerance mechanism of M. spongiola and constitute a robust foundation for further studies on detoxification mechanisms in macrofungi that could potentially lead to the development of new and improved fungal bioremediation strategies.
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Affiliation(s)
- Xu Hongyan
- College of Eco-Environmental Engineering, Qinghai University, Qinghai, China
- Academy of Agriculture and Forestry Sciences, Qinghai University, Qinghai, China
| | - Xie Zhanling
- College of Eco-Environmental Engineering, Qinghai University, Qinghai, China
| | - Jiang Hongchen
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
| | - Guo Jing
- College of Eco-Environmental Engineering, Qinghai University, Qinghai, China
| | - Meng Qing
- College of Eco-Environmental Engineering, Qinghai University, Qinghai, China
| | - Zhao Yuan
- College of Eco-Environmental Engineering, Qinghai University, Qinghai, China
| | - Wang Xiaofang
- College of Eco-Environmental Engineering, Qinghai University, Qinghai, China
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18
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Gao X, Guo P, Wang Z, Chen C, Ren Z. Transcriptome profiling reveals response genes for downy mildew resistance in cucumber. PLANTA 2021; 253:112. [PMID: 33914134 DOI: 10.1007/s00425-021-03603-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 03/22/2021] [Indexed: 06/12/2023]
Abstract
We discovered a potential defense pathway of cucumber to downy mildew. The signaling that activates the pathways of ROS and lignin accumulation may play an important role in the defense response. Many resistance genes were identified by transcriptome analysis. Downy mildew (DM), caused by Pseudoperonospora cubensis, is one of the most destructive diseases and causes severe yield losses of cucumber. However, the genes and pathways involved in regulating DM resistance were still poorly understood. In our study, we observed that the highly sensitive inbred line 53 (IL53) exhibited more severe disease symptoms than the highly resistant inbred line 51 (IL51) under P. cubensis infection. Furthermore, lignin, limiting the germination and extension of P. cubensis, and H2O2, as a signaling molecule during the resistant process, were both shown to increase, indicating that the signaling that activates these pathways might be responsible for the resistance divergence between IL51 and IL53. Transcriptome analysis, using the resistant and susceptible pools in F2 populations with IL51 and IL53 as parents, showed that a series of differentially expressed genes was involved in multiple functions of defense response: pathogen-associated molecular pattern recognition, signal transduction, reactive oxygen species and lignin accumulation, and transcription regulators. Combining physiological data with transcriptomes, we predicted a potential molecular mechanism of cucumber resistance to DM. Our research provided a foundation for further studies on the mechanism of cucumber resistance to DM.
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Affiliation(s)
- Xinbin Gao
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit and Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, College of Horticultural Science and Engineering, Shandong Agricultural University, Ministry of Agriculture, Tai'an, 271018, Shandong, China
| | - Pei Guo
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit and Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, College of Horticultural Science and Engineering, Shandong Agricultural University, Ministry of Agriculture, Tai'an, 271018, Shandong, China
| | - Zhiyuan Wang
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit and Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, College of Horticultural Science and Engineering, Shandong Agricultural University, Ministry of Agriculture, Tai'an, 271018, Shandong, China
| | - Chunhua Chen
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit and Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, College of Horticultural Science and Engineering, Shandong Agricultural University, Ministry of Agriculture, Tai'an, 271018, Shandong, China.
| | - Zhonghai Ren
- State Key Laboratory of Crop Biology, Shandong Collaborative Innovation Center of Fruit and Vegetable Quality and Efficient Production, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops in Huang-Huai Region, College of Horticultural Science and Engineering, Shandong Agricultural University, Ministry of Agriculture, Tai'an, 271018, Shandong, China.
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Hussain S, Hussain S, Ali B, Ren X, Chen X, Li Q, Saqib M, Ahmad N. Recent progress in understanding salinity tolerance in plants: Story of Na +/K + balance and beyond. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 160:239-256. [PMID: 33524921 DOI: 10.1016/j.plaphy.2021.01.029] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 01/18/2021] [Indexed: 05/07/2023]
Abstract
High salt concentrations in the growing medium can severely affect the growth and development of plants. It is imperative to understand the different components of salt-tolerant network in plants in order to produce the salt-tolerant cultivars. High-affinity potassium transporter- and myelocytomatosis proteins have been shown to play a critical role for salinity tolerance through exclusion of sodium (Na+) ions from sensitive shoot tissues in plants. Numerous genes, that limit the uptake of salts from soil and their transport throughout the plant body, adjust the ionic and osmotic balance of cells in roots and shoots. In the present review, we have tried to provide a comprehensive report of major research advances on different mechanisms regulating plant tolerance to salinity stress at proteomics, metabolomics, genomics and transcriptomics levels. Along with the role of ionic homeostasis, a major focus was given on other salinity tolerance mechanisms in plants including osmoregulation and osmo-protection, cell wall remodeling and integrity, and plant antioxidative defense. Major proteins and genes expressed under salt-stressed conditions and their role in enhancing salinity tolerance in plants are discussed as well. Moreover, this manuscript identifies and highlights the key questions on plant salinity tolerance that remain to be discussed in the future.
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Affiliation(s)
- Sadam Hussain
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China; Department of Agronomy, University of Agriculture, Faisalabad, Pakistan
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan; Shanghai Center for Plant Stress Biology, Chinese Academy of Agricultural Sciences, Shanghai, China.
| | - Basharat Ali
- Department of Agronomy, University of Agriculture, Faisalabad, Pakistan
| | - Xiaolong Ren
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Xiaoli Chen
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Qianqian Li
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Muhammad Saqib
- Agronomic Research Institute, Ayub Agricultural Research Institute, Faisalabad, Pakistan
| | - Naeem Ahmad
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
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20
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Dvořák P, Krasylenko Y, Zeiner A, Šamaj J, Takáč T. Signaling Toward Reactive Oxygen Species-Scavenging Enzymes in Plants. FRONTIERS IN PLANT SCIENCE 2021; 11:618835. [PMID: 33597960 PMCID: PMC7882706 DOI: 10.3389/fpls.2020.618835] [Citation(s) in RCA: 70] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Accepted: 12/11/2020] [Indexed: 05/26/2023]
Abstract
Reactive oxygen species (ROS) are signaling molecules essential for plant responses to abiotic and biotic stimuli as well as for multiple developmental processes. They are produced as byproducts of aerobic metabolism and are affected by adverse environmental conditions. The ROS content is controlled on the side of their production but also by scavenging machinery. Antioxidant enzymes represent a major ROS-scavenging force and are crucial for stress tolerance in plants. Enzymatic antioxidant defense occurs as a series of redox reactions for ROS elimination. Therefore, the deregulation of the antioxidant machinery may lead to the overaccumulation of ROS in plants, with negative consequences both in terms of plant development and resistance to environmental challenges. The transcriptional activation of antioxidant enzymes accompanies the long-term exposure of plants to unfavorable environmental conditions. Fast ROS production requires the immediate mobilization of the antioxidant defense system, which may occur via retrograde signaling, redox-based modifications, and the phosphorylation of ROS detoxifying enzymes. This review aimed to summarize the current knowledge on signaling processes regulating the enzymatic antioxidant capacity of plants.
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21
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Mitreiter S, Gigolashvili T. Regulation of glucosinolate biosynthesis. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:70-91. [PMID: 33313802 DOI: 10.1093/jxb/eraa479] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 10/14/2020] [Indexed: 05/18/2023]
Abstract
Glucosinolates are secondary defense metabolites produced by plants of the order Brassicales, which includes the model species Arabidopsis and many crop species. In the past 13 years, the regulation of glucosinolate synthesis in plants has been intensively studied, with recent research revealing complex molecular mechanisms that connect glucosinolate production with responses to other central pathways. In this review, we discuss how the regulation of glucosinolate biosynthesis is ecologically relevant for plants, how it is controlled by transcription factors, and how this transcriptional machinery interacts with hormonal, environmental, and epigenetic mechanisms. We present the central players in glucosinolate regulation, MYB and basic helix-loop-helix transcription factors, as well as the plant hormone jasmonate, which together with other hormones and environmental signals allow the coordinated and rapid regulation of glucosinolate genes. Furthermore, we highlight the regulatory connections between glucosinolates, auxin, and sulfur metabolism and discuss emerging insights and open questions on the regulation of glucosinolate biosynthesis.
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Affiliation(s)
- Simon Mitreiter
- Institute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, Germany
| | - Tamara Gigolashvili
- Institute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, Germany
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22
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Wang C, Gao H, Chu Z, Ji C, Xu Y, Cao W, Zhou S, Song Y, Liu H, Zhu C. A nonspecific lipid transfer protein, StLTP10, mediates resistance to Phytophthora infestans in potato. MOLECULAR PLANT PATHOLOGY 2021; 22:48-63. [PMID: 33118686 PMCID: PMC7749752 DOI: 10.1111/mpp.13007] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 09/09/2020] [Accepted: 09/27/2020] [Indexed: 05/03/2023]
Abstract
Nonspecific lipidtransfer proteins (nsLTPs), which are small, cysteine-rich proteins, belong to the pathogenesis-related protein family, and several of them act as positive regulators during plant disease resistance. However, the underlying molecular mechanisms of these proteins in plant immune responses are unclear. In this study, a typical nsLTP gene, StLTP10, was identified and functionally analysed in potato. StLTP10 expression was significantly induced by Phytophthora infestans, which causes late blight in potato, and defence-related phytohormones, including abscisic acid (ABA), salicylic acid, and jasmonic acid. Characterization of StLTP10-overexpressing and knockdown lines indicated that StLTP10 positively regulates plant resistance to P. infestans. This resistance was coupled with enhanced expression of reactive oxygen species scavenging- and defence-related genes. Furthermore, we identified that StLTP10 physically interacts with ABA receptor PYL4 and affects its subcellular localization. These two proteins work together to regulate stomatal closure during pathogen infection. Interestingly, we also found that wound-induced protein kinase interacts with StLTP10 and positively regulates its protein abundance. Taken together, our results provide insight into the role of StLTP10 in resistance to P. infestans and suggest candidates to enhance broad-spectrum resistance to pathogens in potato.
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Affiliation(s)
- Chenchen Wang
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Hongjuan Gao
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Zhaohui Chu
- State Key Laboratory of Crop BiologyCollege of AgronomyShandong Agricultural UniversityTai’an, ShandongChina
| | - Changquan Ji
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Yang Xu
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Weilin Cao
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Shumei Zhou
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Yunzhi Song
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Hongmei Liu
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
| | - Changxiang Zhu
- State Key Laboratory of Crop BiologyCollege of Life SciencesShandong Agricultural UniversityTai’an, ShandongChina
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23
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Millard PS, Weber K, Kragelund BB, Burow M. Specificity of MYB interactions relies on motifs in ordered and disordered contexts. Nucleic Acids Res 2019; 47:9592-9608. [PMID: 31400117 PMCID: PMC6765112 DOI: 10.1093/nar/gkz691] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Revised: 07/18/2019] [Accepted: 08/08/2019] [Indexed: 02/05/2023] Open
Abstract
Physical interactions between members of the MYB and bHLH transcription factor (TF) families regulate many important biological processes in plants. Not all reported MYB-bHLH interactions can be explained by the known binding sites in the R3 repeat of the MYB DNA-binding domain. Noteworthy, most of the sequence diversity of MYB TFs lies in their non-MYB regions, which contain orphan small subgroup-defining motifs not yet linked to molecular functions. Here, we identified the motif mediating interaction between MYB TFs from subgroup 12 and their bHLH partners. Unlike other known MYB-bHLH interactions, the motif locates to the centre of the predicted disordered non-MYB region. We characterised the core motif, which enabled accurate prediction of previously unknown bHLH-interacting MYB TFs in Arabidopsis thaliana, and we confirmed its functional importance in planta. Our results indicate a correlation between the MYB-bHLH interaction affinity and the phenotypic output controlled by the TF complex. The identification of an interaction motif outside R3 indicates that MYB-bHLH interactions must have arisen multiple times, independently and suggests many more motifs of functional relevance to be harvested from subgroup-specific studies.
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Affiliation(s)
- Peter S Millard
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Konrad Weber
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Birthe B Kragelund
- Structural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark
| | - Meike Burow
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark
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24
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Gui J, Luo L, Zhong Y, Sun J, Umezawa T, Li L. Phosphorylation of LTF1, an MYB Transcription Factor in Populus, Acts as a Sensory Switch Regulating Lignin Biosynthesis in Wood Cells. MOLECULAR PLANT 2019; 12:1325-1337. [PMID: 31145998 DOI: 10.1016/j.molp.2019.05.008] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 05/01/2019] [Accepted: 05/20/2019] [Indexed: 05/03/2023]
Abstract
Lignin is specifically deposited in plant secondary cell walls, and initiation of lignin biosynthesis is regulated by a variety of developmental and environmental signals. However, the mechanisms governing the regulation of lignin biosynthesis remain to be elucidated. In this study, we identified a lignin biosynthesis-associated transcription factor (LTF) from Populus, LTF1, which binds the promoter of a key lignin biosynthetic gene encoding 4-coumarate-CoA ligase (4CL). We showed that LTF1 in its unphosphorylated state functions as a regulator restraining lignin biosynthesis. When LTF1 becomes phosphorylated by PdMPK6 in response to external stimuli such as wounding, it undergoes degradation through a proteasome pathway, resulting in activation of lignification. Expression of a phosphorylation-null mutant version of LTF1 led to stable protein accumulation and persistent attenuation of lignification in wood cells. Taken together, our study reveals a mechanism whereby LTF1 phosphorylation acts as a sensory switch to regulate lignin biosynthesis in response to environmental stimuli. The discovery of novel modulators and mechanisms modifying lignin biosynthesis has important implications for improving the utilization of cell-wall biomass.
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Affiliation(s)
- Jinshan Gui
- National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.
| | - Laifu Luo
- National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China; School of Life Science, Lanzhou University, Lanzhou 730000, China
| | - Yu Zhong
- National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Jiayan Sun
- National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Laigeng Li
- National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.
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25
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Millard PS, Kragelund BB, Burow M. R2R3 MYB Transcription Factors - Functions outside the DNA-Binding Domain. TRENDS IN PLANT SCIENCE 2019; 24:934-946. [PMID: 31358471 DOI: 10.1016/j.tplants.2019.07.003] [Citation(s) in RCA: 81] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 07/02/2019] [Accepted: 07/05/2019] [Indexed: 05/20/2023]
Abstract
Several transcription factor (TF) families, including the MYB family, regulate a wide array of biological processes. TFs contain DNA-binding domains (DBDs) and regulatory regions; although information on protein structure is scarce for plant MYB TFs, various in silico methods suggest that the non-MYB regions contain extensive intrinsically disordered regions (IDRs). Although IDRs do not fold into stable globular structures, they comprise functional regions including interaction motifs, and recent research has shown that IDRs perform crucial biological roles. We map here domain organization, disorder predictions, and functional regions across the entire Arabidopsis thaliana R2R3 MYB TF family, and highlight where an increased research focus will be necessary to shape a new understanding of structure-function relationships in plant TFs.
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Affiliation(s)
- Peter S Millard
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark; Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Birthe B Kragelund
- Structural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Meike Burow
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark; Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark.
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26
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Chen Q, Wang J, Li D, Wang Z, Wang F, Zhang R. Molecular Characterization of the Transcription Factors in Susceptible Poplar Infected with Virulent Melampsora larici-populina. Int J Mol Sci 2019; 20:E4806. [PMID: 31569685 PMCID: PMC6801979 DOI: 10.3390/ijms20194806] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 09/19/2019] [Accepted: 09/24/2019] [Indexed: 02/05/2023] Open
Abstract
Transcription factors (TFs) have been shown to play important roles in determining poplar susceptibility. In this study, the transcript profiles of five resistance-related TF groups at different time points were investigated to study the roles of TFs in the compatible interaction between 'Robusta' (Populus nigra × P. deltoides) and the virulent E4 race of Melampsora larici-populina. The susceptibility test indicated that the parasitic process of E4 could be divided into two representative time periods: the infection phase and the production phase. Bioinformatics analysis showed that in these two phases, E4 infection induced a network of TFs in 'Robusta'. Although some TFs responded rapidly and positively, most TFs did not respond to E4, especially during the infection phase. The ethylene, jasmonic acid, and auxin pathways were downregulated, while a calcium-binding protein was upregulated. No other significantly changed phytohormone-related genes were found, which was consistent with the pathological process in the absence of an immune response, suggesting that the lack of response of most TFs during the infection phase of E4 is related to the susceptibility of 'Robusta'.
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Affiliation(s)
- Qiaoli Chen
- School of Forestry, Northeast Forestry University, Harbin 150040, China.
| | - Jianan Wang
- School of Forestry, Northeast Forestry University, Harbin 150040, China.
| | - Danlei Li
- School of Forestry, Northeast Forestry University, Harbin 150040, China.
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China.
| | - Zhiying Wang
- School of Forestry, Northeast Forestry University, Harbin 150040, China.
| | - Feng Wang
- School of Forestry, Northeast Forestry University, Harbin 150040, China.
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, Harbin 150040, China.
| | - Ruizhi Zhang
- School of Forestry, Northeast Forestry University, Harbin 150040, China.
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27
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Wang MQ, Zeng QH, Huang QX, Lin P, Li Y, Liu QL, Zhang L. Transcriptomic Analysis of Verbena bonariensis Leaves Under Low-Temperature Stress. DNA Cell Biol 2019; 38:1233-1248. [PMID: 31532241 DOI: 10.1089/dna.2019.4707] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Verbena bonariensis is a valuable plant for both ornament and flower border. As a major constraint, low temperature affects the growing development and survival of V. bonariensis. However, there are few systematic studies in terms of molecular mechanism on the tolerance of low temperature in V. bonariensis. In this study, Illumina sequencing technology was applied to analyze the cold resistance mechanism of plants. Six cDNA libraries were obtained from two samples of two groups, the cold-treated group and the control group. A total of 271,920 unigenes were produced from 406,641 assembled transcripts. Among these, 19,003 differentially expressed genes (DEGs) (corrected p-value <0.01, |log2(fold change) | >3) were obtained, including 9852 upregulated and 9151 downregulated genes. The antioxidant enzyme system, photosynthesis, plant hormone signal transduction, fatty acid metabolism, starch and sucrose metabolism pathway, and transcription factors were analyzed. Based on these results, series of candidate genes related to cold stress were screened out and discussed. The physiological indexes related to response mechanism of low temperature were tested. Eleven upregulated DEGs were validated by Quantitative Real-time PCR. In this study, we provided the transcriptome sequence resource of V. bonariensis and used these data to realize its molecular mechanism under cold stress. The results contributed to valuable clues for genetic studies and helped to screen candidate genes for cold-resistance breeding.
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Affiliation(s)
- Meng-Qi Wang
- Department of Ornamental Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Qin-Han Zeng
- Department of Ornamental Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Qiu-Xiang Huang
- Department of Ornamental Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Ping Lin
- Department of Ornamental Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Yan Li
- The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Institute of Agro-Bioengineering and College of Life Sciences, Guizhou University, Guiyang, China
| | - Qing-Lin Liu
- Department of Ornamental Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Lei Zhang
- Department of Ornamental Horticulture, Sichuan Agricultural University, Chengdu, China
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28
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Vadovič P, Šamajová O, Takáč T, Novák D, Zapletalová V, Colcombet J, Šamaj J. Biochemical and Genetic Interactions of Phospholipase D Alpha 1 and Mitogen-Activated Protein Kinase 3 Affect Arabidopsis Stress Response. FRONTIERS IN PLANT SCIENCE 2019; 10:275. [PMID: 30936884 PMCID: PMC6431673 DOI: 10.3389/fpls.2019.00275] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 02/20/2019] [Indexed: 05/21/2023]
Abstract
Phospholipase D alpha 1 (PLDα1, AT3G15730) and mitogen-activated protein kinases (MAPKs) participate on signaling-dependent events in plants. MAPKs are able to phosphorylate a wide range of substrates putatively including PLDs. Here we have focused on functional regulations of PLDα1 by interactions with MAPKs, their co-localization and impact on salt stress and abscisic acid (ABA) tolerance in Arabidopsis. Yeast two-hybrid and bimolecular fluorescent assays showed that PLDα1 interacts with MPK3. Immunoblotting analyses likewise confirmed connection between both these enzymes. Subcellularly we co-localized PLDα1 with MPK3 in the cortical cytoplasm close to the plasma membrane and in cytoplasmic strands. Moreover, genetic interaction studies revealed that pldα1mpk3 double mutant was resistant to a higher salinity and showed a higher tolerance to ABA during germination in comparison to single mutants and wild type. Thus, this study revealed importance of new biochemical and genetic interactions between PLDα1 and MPK3 for Arabidopsis stress (salt and ABA) response.
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Affiliation(s)
- Pavol Vadovič
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
| | - Olga Šamajová
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
| | - Tomáš Takáč
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
| | - Dominik Novák
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
| | - Veronika Zapletalová
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
| | - Jean Colcombet
- Institute of Plant Sciences Paris-Saclay, CNRS, INRA, Université Paris-Sud, Université d’Evry, Université Paris Diderot, Sorbonne Paris Cité, Université Paris Saclay, Orsay, France
| | - Jozef Šamaj
- Department of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
- *Correspondence: Jozef Šamaj,
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AtMYB44 interacts with TOPLESS-RELATED corepressors to suppress protein phosphatase 2C gene transcription. Biochem Biophys Res Commun 2018; 507:437-442. [PMID: 30448055 DOI: 10.1016/j.bbrc.2018.11.057] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 11/10/2018] [Indexed: 11/21/2022]
Abstract
AtMYB44 has been described in diverse hormonal signaling processes including abscisic acid (ABA)-mediated tolerance to abiotic stress; however, its function as a transcription factor is controversial. AtMYB44 contains the amino acid sequence LSLSL, a putative ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR-ASSOCIATED AMPHIPHILIC REPRESSION (EAR) motif. In yeast two-hybrid assay, physical interaction between AtMYB44 and a TOPLESS-RELATED (TPR) corepressor was observed, but abolished by mutation of the EAR motif. We performed bimolecular fluorescence complementation assay to confirm their interaction in planta. Chromatin immunoprecipitation assay revealed binding of AtMYB44 to the promoter regions of clade A protein phosphatase 2C (PP2C) genes (e.g., ABI1, ABI2, and HAI1), implying putative targets. Levels of histone H3 acetylation around the promoter regions were markedly lower in AtMYB44-overexpressing (35S:AtMYB44) plants than in wild-type plants. These results suggest that AtMYB44 forms a complex with TPR corepressors and recruits histone deacetylase(s) to suppress PP2C gene transcription in a signal-independent manner.
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30
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Zhang M, Su J, Zhang Y, Xu J, Zhang S. Conveying endogenous and exogenous signals: MAPK cascades in plant growth and defense. CURRENT OPINION IN PLANT BIOLOGY 2018; 45:1-10. [PMID: 29753266 DOI: 10.1016/j.pbi.2018.04.012] [Citation(s) in RCA: 158] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Revised: 04/19/2018] [Accepted: 04/23/2018] [Indexed: 05/20/2023]
Abstract
Mitogen-activated protein kinase (MAPK) cascades are key signaling modules downstream of receptors/sensors that perceive endogenous and exogenous stimuli such as hormones, peptide ligands, and pathogen-derived patterns/effectors. In this review, we summarize recent advances in the establishment of MAPK cascades as unified signaling modules downstream of receptor-like kinases (RLKs) and receptor-like proteins (RLPs) in plant growth and defense, the identification of components connecting the RLK/RLP receptor complexes to the MAPK cascades, and the interactions between MAPK and hormone signaling pathways. We also propose a set of criteria for defining the physiological substrates of plant MAPKs. With only a limited number of MAPK components, multiple functional pathways often share the same MAPK cascade. As a result, understanding the signaling specificity, which requires detailed information about the spatiotemporal expression of the components involved, their complex formation, and the consequence of substrate phosphorylation, is central to our study of MAPK functions.
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Affiliation(s)
- Mengmeng Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Jianbin Su
- Division of Biochemistry, Interdisciplinary Plant Group, Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
| | - Yan Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Juan Xu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China.
| | - Shuqun Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China; Division of Biochemistry, Interdisciplinary Plant Group, Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.
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Wei L, Mao W, Jia M, Xing S, Ali U, Zhao Y, Chen Y, Cao M, Dai Z, Zhang K, Dou Z, Jia W, Li B. FaMYB44.2, a transcriptional repressor, negatively regulates sucrose accumulation in strawberry receptacles through interplay with FaMYB10. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4805-4820. [PMID: 30085079 PMCID: PMC6137983 DOI: 10.1093/jxb/ery249] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Accepted: 07/18/2018] [Indexed: 05/09/2023]
Abstract
Sugar and acid metabolism are critical for fruit ripening and quality formation, but the underlying regulatory mechanisms are largely unknown. Here, we identified a transcriptional repressor, FaMYB44.2, that regulates sugar and acid accumulation in strawberry (Fragaria × ananassa 'Benihoppe') receptacles. We transiently expressed FaMYB44.2 in strawberry fruit and conducted metabolic and molecular analyses to explore the role of FaMYB44.2 in sugar and acid accumulation in strawberry. We found that FaMYB44.2 negatively regulates soluble sugar accumulation and malic acid content and represses the expression of numerous structural genes, including FaSPS3, a key gene in sucrose accumulation. From the white fruit stage onwards, the repressive effect of FaMYB44.2 on FaSPS3 is reversed by FaMYB10, which positively regulates anthocyanin accumulation. Our results indicate that FaMYB10 suppresses FaMYB44.2 expression; weakens the interaction between FaMYB44.2 and its co-repressor, FabHLH3; and cooperates with FabHLH3 to activate the expression of FaSPS3. The interplay between FaMYB10 and FaMYB44.2 results in sucrose accumulation in ripe strawberry fruits. In addition, the repressive effect of FaMYB44.2 on sucrose accumulation is enhanced by jasmonic acid. This study provides new insights into the regulatory mechanisms of sucrose accumulation and sheds light on the interplay between regulatory proteins during strawberry fruit ripening and quality formation.
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Affiliation(s)
- Lingzhi Wei
- College of Horticulture, China Agricultural University, Beijing, China
| | - Wenwen Mao
- College of Horticulture, China Agricultural University, Beijing, China
| | - Meiru Jia
- College of Horticulture, China Agricultural University, Beijing, China
| | - Sinian Xing
- College of Horticulture, China Agricultural University, Beijing, China
| | - Usman Ali
- College of Horticulture, China Agricultural University, Beijing, China
| | - Yaoyao Zhao
- College of Horticulture, China Agricultural University, Beijing, China
| | - Yating Chen
- College of Horticulture, China Agricultural University, Beijing, China
| | - Minglin Cao
- College of Horticulture, China Agricultural University, Beijing, China
| | - Zhengrong Dai
- College of Horticulture, China Agricultural University, Beijing, China
| | - Kai Zhang
- College of Horticulture, China Agricultural University, Beijing, China
| | - Zhechao Dou
- College of Horticulture, China Agricultural University, Beijing, China
| | - Wensuo Jia
- College of Horticulture, China Agricultural University, Beijing, China
| | - Bingbing Li
- College of Horticulture, China Agricultural University, Beijing, China
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He H, Van Breusegem F, Mhamdi A. Redox-dependent control of nuclear transcription in plants. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3359-3372. [PMID: 29659979 DOI: 10.1093/jxb/ery130] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2017] [Accepted: 03/27/2018] [Indexed: 05/03/2023]
Abstract
Redox-dependent regulatory networks are affected by altered cellular or extracellular levels of reactive oxygen species (ROS). Perturbations of ROS production and scavenging homeostasis have a considerable impact on the nuclear transcriptome. While the regulatory mechanisms by which ROS modulate gene transcription in prokaryotes, lower eukaryotes, and mammalian cells are well established, new insights into the mechanism underlying redox control of gene expression in plants have only recently been known. In this review, we aim to provide an overview of the current knowledge on how ROS and thiol-dependent transcriptional regulatory networks are controlled. We assess the impact of redox perturbations and oxidative stress on transcriptome adjustments using cat2 mutants as a model system and discuss how redox homeostasis can modify the various parts of the transcriptional machinery.
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Affiliation(s)
- Huaming He
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Amna Mhamdi
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
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Golestan Hashemi FS, Ismail MR, Rafii MY, Aslani F, Miah G, Muharam FM. Critical multifunctional role of the betaine aldehyde dehydrogenase gene in plants. BIOTECHNOL BIOTEC EQ 2018. [DOI: 10.1080/13102818.2018.1478748] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022] Open
Affiliation(s)
- Farahnaz Sadat Golestan Hashemi
- Gembloux Agro-Bio Tech, University of Liege, Leige, Belgium
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mohd Razi Ismail
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Mohd Y. Rafii
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Farzad Aslani
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Gous Miah
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
| | - Farah Melissa Muharam
- Department of Agricultural Technology, Faculty of Agriculture, Universiti Putra Malaysia, Serdang, Selangor, Malaysia
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Komis G, Šamajová O, Ovečka M, Šamaj J. Cell and Developmental Biology of Plant Mitogen-Activated Protein Kinases. ANNUAL REVIEW OF PLANT BIOLOGY 2018; 69:237-265. [PMID: 29489398 DOI: 10.1146/annurev-arplant-042817-040314] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Plant mitogen-activated protein kinases (MAPKs) constitute a network of signaling cascades responsible for transducing extracellular stimuli and decoding them to dedicated cellular and developmental responses that shape the plant body. Over the last decade, we have accumulated information about how MAPK modules control the development of reproductive tissues and gametes and the embryogenic and postembryonic development of vegetative organs such as roots, root nodules, shoots, and leaves. Of key importance to understanding how MAPKs participate in developmental and environmental signaling is the characterization of their subcellular localization, their interactions with upstream signal perception mechanisms, and the means by which they target their substrates. In this review, we summarize the roles of MAPK signaling in the regulation of key plant developmental processes, and we survey what is known about the mechanisms guiding the subcellular compartmentalization of MAPK modules.
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Affiliation(s)
- George Komis
- Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, 783 71 Olomouc, Czech Republic;
| | - Olga Šamajová
- Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, 783 71 Olomouc, Czech Republic;
| | - Miroslav Ovečka
- Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, 783 71 Olomouc, Czech Republic;
| | - Jozef Šamaj
- Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, 783 71 Olomouc, Czech Republic;
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Pitzschke A. Molecular dynamics in germinating, endophyte-colonized quinoa seeds. PLANT AND SOIL 2018; 422:135-154. [PMID: 29416180 PMCID: PMC5798591 DOI: 10.1007/s11104-017-3184-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Accepted: 01/17/2017] [Indexed: 06/08/2023]
Abstract
AIMS The pseudo-cereal quinoa has an outstanding nutritional value. Seed germination is unusually fast, and plant tolerance to salt stress exceptionally high. Seemingly all seeds harbor bacterial endophytes. This work examines mitogen-activated protein kinase (MAPK) activities during early development. It evaluates possible contribution of endophytes to rapid germination and plant robustness. METHODS MAPK activities were monitored in water- and NaCl-imbibed seeds over a 4-h-period using an immunoblot-based approach. Cellulolytic and pectinolytic abilities of bacteria were assessed biochemically, and cellular movement, biofilm, elicitor and antimicrobial compound synthesis genes sequenced. GyrA-based, cultivation-independent studies provided first insight into endophyte diversity. RESULTS Quinoa seeds and seedlings exhibit remarkably complex and dynamic MAPK activity profiles. Depending on seed origin, variances exist in MAPK patterns and probably also in endophyte assemblages. Mucilage-degrading activities enable endophytes to colonize seed surfaces of a non-host species, chia, without apparent adverse effects. CONCLUSIONS Owing to their motility, cell wall-loosening and elicitor-generating abilities, quinoa endophytes have the potential to drive cell expansion, move across cell walls, generate damage-associated molecular patterns and activate MAPKs in their host. Bacteria may thus facilitate rapid germination and confer a primed state directly upon seed rehydration. Transfer into non-native crops appears both desirable and feasible.
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Affiliation(s)
- Andrea Pitzschke
- Division of Plant Physiology, Department of Cell Biology, University of Salzburg, Hellbrunner Strasse 34, A-5020 Salzburg, Austria
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Bigeard J, Hirt H. Nuclear Signaling of Plant MAPKs. FRONTIERS IN PLANT SCIENCE 2018; 9:469. [PMID: 29696029 PMCID: PMC5905223 DOI: 10.3389/fpls.2018.00469] [Citation(s) in RCA: 111] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 03/26/2018] [Indexed: 05/18/2023]
Abstract
Mitogen-activated protein kinases (MAPKs) are conserved protein kinases in eukaryotes that establish signaling modules where MAPK kinase kinases (MAPKKKs) activate MAPK kinases (MAPKKs) which in turn activate MAPKs. In plants, they are involved in the signaling of multiple environmental stresses and developmental programs. MAPKs phosphorylate their substrates and this post-translational modification (PTM) contributes to the regulation of proteins. PTMs may indeed modify the activity, subcellular localization, stability or trans-interactions of modified proteins. Plant MAPKs usually localize to the cytosol and/or nucleus, and in some instances they may also translocate from the cytosol to the nucleus. Upon the detection of environmental changes at the cell surface, MAPKs participate in the signal transduction to the nucleus, allowing an adequate transcriptional reprogramming. The identification of plant MAPK substrates largely contributed to a better understanding of the underlying signaling mechanisms. In this review, we highlight the nuclear signaling of plant MAPKs. We discuss the activation, regulation and activity of plant MAPKs, as well as their nuclear re-localization. We also describe and discuss known nuclear substrates of plant MAPKs in the context of biotic stress, abiotic stress and development and consider future research directions in the field of plant MAPKs.
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Affiliation(s)
- Jean Bigeard
- Institute of Plant Sciences Paris-Saclay IPS2, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Evry, Université Paris-Saclay, Orsay, France
- Institute of Plant Sciences Paris-Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Orsay, France
| | - Heribert Hirt
- Center for Desert Agriculture, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
- *Correspondence: Heribert Hirt
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37
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Hoang XLT, Nhi DNH, Thu NBA, Thao NP, Tran LSP. Transcription Factors and Their Roles in Signal Transduction in Plants under Abiotic Stresses. Curr Genomics 2017. [PMID: 29204078 DOI: 10.2174/1389101918666170227150057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2023] Open
Abstract
In agricultural production, abiotic stresses are known as the main disturbance leading to negative impacts on crop performance. Research on elucidating plant defense mechanisms against the stresses at molecular level has been addressed for years in order to identify the major contributors in boosting the plant tolerance ability. From literature, numerous genes from different species, and from both functional and regulatory gene categories, have been suggested to be on the list of potential candidates for genetic engineering. Noticeably, enhancement of plant stress tolerance by manipulating expression of Transcription Factors (TFs) encoding genes has emerged as a popular approach since most of them are early stress-responsive genes and control the expression of a set of downstream target genes. Consequently, there is a higher chance to generate novel cultivars with better tolerance to either single or multiple stresses. Perhaps, the difficult task when deploying this approach is selecting appropriate gene(s) for manipulation. In this review, on the basis of the current findings from molecular and post-genomic studies, our interest is to highlight the current understanding of the roles of TFs in signal transduction and mediating plant responses towards abiotic stressors. Furthermore, interactions among TFs within the stress-responsive network will be discussed. The last section will be reserved for discussing the potential applications of TFs for stress tolerance improvement in plants.
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Affiliation(s)
- Xuan Lan Thi Hoang
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Du Ngoc Hai Nhi
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Nguyen Binh Anh Thu
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Nguyen Phuong Thao
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Lam-Son Phan Tran
- Plant Abiotic Stress Research Group & Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Signaling Pathway Research Unit, RIKEN Center for Sustainable Resource Science, Yokohama, Japan
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38
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Hoang XLT, Nhi DNH, Thu NBA, Thao NP, Tran LSP. Transcription Factors and Their Roles in Signal Transduction in Plants under Abiotic Stresses. Curr Genomics 2017; 18:483-497. [PMID: 29204078 PMCID: PMC5684650 DOI: 10.2174/1389202918666170227150057] [Citation(s) in RCA: 105] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Revised: 10/07/2016] [Accepted: 10/15/2016] [Indexed: 12/15/2022] Open
Abstract
In agricultural production, abiotic stresses are known as the main disturbance leading to negative impacts on crop performance. Research on elucidating plant defense mechanisms against the stresses at molecular level has been addressed for years in order to identify the major contributors in boosting the plant tolerance ability. From literature, numerous genes from different species, and from both functional and regulatory gene categories, have been suggested to be on the list of potential candidates for genetic engineering. Noticeably, enhancement of plant stress tolerance by manipulating expression of Transcription Factors (TFs) encoding genes has emerged as a popular approach since most of them are early stress-responsive genes and control the expression of a set of downstream target genes. Consequently, there is a higher chance to generate novel cultivars with better tolerance to either single or multiple stresses. Perhaps, the difficult task when deploying this approach is selecting appropriate gene(s) for manipulation. In this review, on the basis of the current findings from molecular and post-genomic studies, our interest is to highlight the current understanding of the roles of TFs in signal transduction and mediating plant responses towards abiotic stressors. Furthermore, interactions among TFs within the stress-responsive network will be discussed. The last section will be reserved for discussing the potential applications of TFs for stress tolerance improvement in plants.
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Affiliation(s)
- Xuan Lan Thi Hoang
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Du Ngoc Hai Nhi
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Nguyen Binh Anh Thu
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Nguyen Phuong Thao
- School of Biotechnology, International University, Vietnam National University, Ho Chi Minh City, Vietnam
| | - Lam-Son Phan Tran
- Plant Abiotic Stress Research Group & Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam
- Signaling Pathway Research Unit, RIKEN Center for Sustainable Resource Science, Yokohama, Japan
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Xiao X, Tang Z, Li X, Hong Y, Li B, Xiao W, Gao Z, Lin D, Li C, Luo L, Niu X, He C, Chen Y. Overexpressing OsMAPK12-1 inhibits plant growth and enhances resistance to bacterial disease in rice. FUNCTIONAL PLANT BIOLOGY : FPB 2017; 44:694-704. [PMID: 32480599 DOI: 10.1071/fp16397] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 03/29/2017] [Indexed: 06/11/2023]
Abstract
Mitogen-activated protein kinases (MAPKs) play important roles in plant growth and development, plant abiotic stresses signalling pathway and plant-pathogen interactions. However, little is known about the roles of MAPKs in modulating plant growth and pathogen resistance. In this study, we found that OsMAPK12-1, an alternatively spliced form of BWMK1 in rice (Oryza sativa L.), was induced by various elicitors, such as jasmonic acid, salicylic acid, melatonin and bacterial pathogens. To further investigate the involvement of OsMAPK12-1 in plant growth and stress responses to bacterial pathogens, we constructed OsMAPK12-1 overexpression and knockdown (RNAi) transgenic rice lines. Interestingly, overexpressing OsMAP12-1 inhibited seed germination and seedling growth. Additionally, the OsMAP12-1-overexpression lines displayed enhanced disease resistance against Xanthomonas oryzae pv. oryzae PXO99 and Xanthomonas oryzae pv. oryzicola RS105, whereas the OsMAPK12-1-RNAi lines were more susceptible to these pathogens than wild type. These results suggest that OsMAPK12-1 plays a negative role in plant growth and positively modulates disease resistance against bacterial blight and streak in rice.
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Affiliation(s)
- Xiaorong Xiao
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Zhijuan Tang
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Xiuqiong Li
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Yuhui Hong
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Boling Li
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Wenfang Xiao
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Zhiliang Gao
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Daozhe Lin
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Chunxia Li
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Lijuan Luo
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Xiaolei Niu
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Chaozu He
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
| | - Yinhua Chen
- Hainan Key Laboratory for Sustainable Utilisation of Tropical Bioresource, Hainan University, Haikou 570228, PR China
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Kim YY, Cui MH, Noh MS, Jung KW, Shin JS. The FBA motif-containing protein AFBA1 acts as a novel positive regulator of ABA response in Arabidopsis. PLANT & CELL PHYSIOLOGY 2017; 58:574-586. [PMID: 28184867 DOI: 10.1093/pcp/pcx003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 01/04/2017] [Indexed: 06/06/2023]
Abstract
ABA plays a critical role in regulating seed germination and stomatal movement in response to drought stress. Screening ABA-responsive genes led to the identification of a novel Arabidopsis gene encoding a protein which contained a conserved F-box-associated (FBA) domain, subsequently named ABA-responsive FBA domain-containing protein 1 (AFBA1). Expression of ProAFBA1:GUS revealed that this gene was mainly expressed in guard cells. Expression of AFBA1 increased following the application of exogenous ABA and exposure to salt (NaCl) and drought stresses. Seed germination of the loss-of-function mutant (afba1) was insensitive to ABA, salt or mannitol, whereas AFBA1-overexpressing (Ox) seeds were more sensitive to these stresses than the wild-type seeds. The afba1 plants showed decreased drought tolerance, increased water loss rate and ABA-insensitive stomatal movement compared with the wild-type. In contrast, AFBA1-Ox plants exhibited enhanced drought tolerance and a rapid ABA-induced stomatal closure response. The expression of genes encoding serine/threonine protein phosphatases that are known negative regulators of ABA signaling increased in afba1 plants but decreased in AFBA1-Ox plants. AFBA1 was also found to be localized in the nucleus and to interact with an R2R3-type transcription factor, MYB44, leading to the suggestion that it functions in the stabilization of MYB44. Based on these results, we suggest that AFBA1 functions as a novel positive regulator of ABA responses, regulating the expression of genes involved in ABA signal transduction in Arabidopsis through its interaction with positive regulators of ABA signaling including MYB44, and increasing their stability during ABA-mediated responses.
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Affiliation(s)
- Yun Young Kim
- Division of Life Sciences, Korea University, Seoul 136-701, Korea
| | - Mei Hua Cui
- Division of Life Sciences, Korea University, Seoul 136-701, Korea
- School of Life Sciences and Biotechnology, Shanghai JiaoTong University, Shanghai 200240, China
| | - Min Soo Noh
- Division of Life Sciences, Korea University, Seoul 136-701, Korea
| | - Kwang Wook Jung
- Division of Life Sciences, Korea University, Seoul 136-701, Korea
- DuPont Pioneer Hi-Bred, DuPont (Korea) Inc., Gangnam-gu, Seoul 135-719, Korea
| | - Jeong Sheop Shin
- Division of Life Sciences, Korea University, Seoul 136-701, Korea
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41
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Liu Y, He C. A review of redox signaling and the control of MAP kinase pathway in plants. Redox Biol 2016; 11:192-204. [PMID: 27984790 PMCID: PMC5157795 DOI: 10.1016/j.redox.2016.12.009] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Accepted: 12/08/2016] [Indexed: 02/02/2023] Open
Abstract
Mitogen-activated protein kinase (MAPK) cascades are evolutionarily conserved modules among eukaryotic species that range from yeast, plants, flies to mammals. In eukaryotic cells, reactive oxygen species (ROS) has both physiological and toxic effects. Both MAPK cascades and ROS signaling are involved in plant response to various biotic and abiotic stresses. It has been observed that not only can ROS induce MAPK activation, but also that disturbing MAPK cascades can modulate ROS production and responses. This review will discuss the potential mechanisms by which ROS may activate and/or regulate MAPK cascades in plants. The role of MAPK cascades and ROS signaling in regulating gene expression, stomatal function, and programmed cell death (PCD) is also discussed. In addition, the relationship between Rboh-dependent ROS production and MAPK activation in PAMP-triggered immunity will be reviewed.
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Affiliation(s)
- Yukun Liu
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, College of Forestry, Southwest Forestry University, 300 Bailong Si, Kunming 650224, Yunnan, People's Republic of China; Key Laboratory for Forest Genetic and Tree Improvement & Propagation in Universities of Yunnan Province, College of Forestry, Southwest Forestry University, 300 Bailong Si, Kunming 650224, Yunnan, People's Republic of China.
| | - Chengzhong He
- Key Laboratory for Forest Genetic and Tree Improvement & Propagation in Universities of Yunnan Province, College of Forestry, Southwest Forestry University, 300 Bailong Si, Kunming 650224, Yunnan, People's Republic of China
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Papazian S, Khaling E, Bonnet C, Lassueur S, Reymond P, Moritz T, Blande JD, Albrectsen BR. Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure. PLANT PHYSIOLOGY 2016; 172:2057-2078. [PMID: 27758847 PMCID: PMC5100778 DOI: 10.1104/pp.16.01318] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Accepted: 10/03/2016] [Indexed: 05/04/2023]
Abstract
Plants have evolved adaptive mechanisms that allow them to tolerate a continuous range of abiotic and biotic stressors. Tropospheric ozone (O3), a global anthropogenic pollutant, directly affects living organisms and ecosystems, including plant-herbivore interactions. In this study, we investigate the stress responses of Brassica nigra (wild black mustard) exposed consecutively to O3 and the specialist herbivore Pieris brassicae Transcriptomics and metabolomics data were evaluated using multivariate, correlation, and network analyses for the O3 and herbivory responses. O3 stress symptoms resembled those of senescence and phosphate starvation, while a sequential shift from O3 to herbivory induced characteristic plant defense responses, including a decrease in central metabolism, induction of the jasmonic acid/ethylene pathways, and emission of volatiles. Omics network and pathway analyses predicted a link between glycerol and central energy metabolism that influences the osmotic stress response and stomatal closure. Further physiological measurements confirmed that while O3 stress inhibited photosynthesis and carbon assimilation, sequential herbivory counteracted the initial responses induced by O3, resulting in a phenotype similar to that observed after herbivory alone. This study clarifies the consequences of multiple stress interactions on a plant metabolic system and also illustrates how omics data can be integrated to generate new hypotheses in ecology and plant physiology.
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Affiliation(s)
- Stefano Papazian
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.)
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - Eliezer Khaling
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.)
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - Christelle Bonnet
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.)
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - Steve Lassueur
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.)
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - Philippe Reymond
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.)
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - Thomas Moritz
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.)
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - James D Blande
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.);
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
| | - Benedicte R Albrectsen
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90187 Umeå (S.P., B.R.A.); Department of Forest Genetic and Plant Physiology, Swedish University of Agricultural Sciences, 90183 Umeå, Sweden (T.M.);
- Department of Environmental and Biological Sciences, University of Eastern Finland, FIN-70211 Kuopio, Finland (E.K., J.D.B.); and
- Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (C.B., S.L., P.R.)
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Zhao Q, Li M, Jia Z, Liu F, Ma H, Huang Y, Song S. AtMYB44 Positively Regulates the Enhanced Elongation of Primary Roots Induced by N-3-Oxo-Hexanoyl-Homoserine Lactone in Arabidopsis thaliana. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2016; 29:774-785. [PMID: 27604593 DOI: 10.1094/mpmi-03-16-0063-r] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
N-acyl-homoserine lactones (AHL) are the quorum-sensing (QS) signal molecules used by many gram-negative bacteria to coordinate their collective behavior in a population. Recent evidence demonstrates their roles in plant root growth and defense responses. AtMYB44 is a multifaceted transcriptional factor that functions in many physiological processes in plants but whether AtMYB44 modulates the plant response to AHL with aspects of primary root elongation remains unknown. Here, we show that the expression of AtMYB44 was upregulated upon treatment with N-3-oxo-hexanoyl-homoserine lactone (3OC6-HSL). The stimulatory effect of 3OC6-HSL on primary root elongation was abolished in the AtMYB44 functional-deficiency mutant atmby44. In contrast, an enhanced promoting-impact of 3OC6-HSL on primary root growth was observed in AtMYB44-overexpressing plant MYB44OTA. Cellular analysis indicated that the prolonged primary root elicited by 3OC6-HSL is the consequence of increased cell division in the meristem zone and enhanced cell elongation in the elongation zone, and AtMYB44 may act as a positive regulator in this process. Furthermore, we demonstrated that AtMYB44 might participate in the 3OC6-HSL-mediated primary root growth via regulating the expression of cytokinin- and auxin-related genes. The data establish a genetic connection between the regulatory role of AtMYB44 in phytohormones-related gene expression and plant response to the bacterial QS signal.
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Affiliation(s)
- Qian Zhao
- 1 Biology Institute, Hebei Academy of Sciences; and
- 2 Hebei Engineering and Technology Center of Microbiological Control on Main Crop Disease, 46th South Street of Friendship, Shijiazhuang, 050051, China
| | - Man Li
- 1 Biology Institute, Hebei Academy of Sciences; and
| | - Zhenhua Jia
- 1 Biology Institute, Hebei Academy of Sciences; and
- 2 Hebei Engineering and Technology Center of Microbiological Control on Main Crop Disease, 46th South Street of Friendship, Shijiazhuang, 050051, China
| | - Fang Liu
- 1 Biology Institute, Hebei Academy of Sciences; and
- 2 Hebei Engineering and Technology Center of Microbiological Control on Main Crop Disease, 46th South Street of Friendship, Shijiazhuang, 050051, China
| | - Hong Ma
- 1 Biology Institute, Hebei Academy of Sciences; and
- 2 Hebei Engineering and Technology Center of Microbiological Control on Main Crop Disease, 46th South Street of Friendship, Shijiazhuang, 050051, China
| | - Yali Huang
- 1 Biology Institute, Hebei Academy of Sciences; and
- 2 Hebei Engineering and Technology Center of Microbiological Control on Main Crop Disease, 46th South Street of Friendship, Shijiazhuang, 050051, China
| | - Shuishan Song
- 1 Biology Institute, Hebei Academy of Sciences; and
- 2 Hebei Engineering and Technology Center of Microbiological Control on Main Crop Disease, 46th South Street of Friendship, Shijiazhuang, 050051, China
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The ABA receptor PYL9 together with PYL8 plays an important role in regulating lateral root growth. Sci Rep 2016; 6:27177. [PMID: 27256015 PMCID: PMC4891660 DOI: 10.1038/srep27177] [Citation(s) in RCA: 80] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Accepted: 05/13/2016] [Indexed: 02/07/2023] Open
Abstract
Abscisic acid is a phytohormone regulating plant growth, development and stress responses. PYR1/PYL/RCAR proteins are ABA receptors that function by inhibiting PP2Cs to activate SnRK2s, resulting in phosphorylation of ABFs and other effectors of ABA response pathways. Exogenous ABA induces growth quiescence of lateral roots, which is prolonged by knockout of the ABA receptor PYL8. Among the 14 members of PYR1/PYL/RCAR protein family, PYL9 is a close relative of PYL8. Here we show that knockout of both PYL9 and PYL8 resulted in a longer ABA-induced quiescence on lateral root growth and a reduced sensitivity to ABA on primary root growth and lateral root formation compared to knockout of PYL8 alone. Induced overexpression of PYL9 promoted the lateral root elongation in the presence of ABA. The prolonged quiescent phase of the pyl8-1pyl9 double mutant was reversed by exogenous IAA. PYL9 may regulate auxin-responsive genes in vivo through direct interaction with MYB77 and MYB44. Thus, PYL9 and PYL8 are both responsible for recovery of lateral root from ABA inhibition via MYB transcription factors.
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45
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Yu YT, Wu Z, Lu K, Bi C, Liang S, Wang XF, Zhang DP. Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana. PLANT MOLECULAR BIOLOGY 2016; 90:267-79. [PMID: 26646286 PMCID: PMC4717180 DOI: 10.1007/s11103-015-0411-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2015] [Accepted: 11/24/2015] [Indexed: 05/04/2023]
Abstract
Although a lot of genes have been revealed to participate in abscisic acid (ABA) signaling, many of the additional components involved in ABA signaling remain to be discovered. Here we report that overexpression of MYB37, a R2R3 MYB subgroup 14 transcription factor in Arabidopsis thaliana, confers hypersensitive phenotypes to exogenous ABA in all the major ABA responses, including ABA-induced inhibition of seed germination, cotyledon greening and early seedling growth, and ABA-induced stomatal closure and inhibition of stomatal opening. Interestingly and importantly, MYB37-overexpression improves plant tolerance to drought, enhances growth of mature plants and seed productivity, thought it delays flowering, which suggests that this gene may be used for improving crop adaptability to drought environment and productivity. However, a myb37-1 knockout mutant displays wild-type ABA responses most likely due to a functional redundancy of the multiple MYB members. Real-time PCR analysis shows that upregulation of the MYB37 expression changes expression of a subset of ABA-responsive genes. Together, these findings suggest that the MYB37 transcription factor plays an important, positive role in plant response to ABA and drought stress, and meanwhile, it plays a positive role in the regulation of seed production.
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Affiliation(s)
- Yong-Tao Yu
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Zhen Wu
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Kai Lu
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Chao Bi
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Shan Liang
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Xiao-Fang Wang
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.
| | - Da-Peng Zhang
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.
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Pitzschke A, Xue H, Persak H, Datta S, Seifert GJ. Post-Translational Modification and Secretion of Azelaic Acid Induced 1 (AZI1), a Hybrid Proline-Rich Protein from Arabidopsis. Int J Mol Sci 2016; 17:E85. [PMID: 26771603 PMCID: PMC4730328 DOI: 10.3390/ijms17010085] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Revised: 12/28/2015] [Accepted: 01/05/2016] [Indexed: 11/30/2022] Open
Abstract
Arabidopsis EARLI-type hybrid proline-rich proteins (HyPRPs) consist of a putative N-terminal secretion signal, a proline-rich domain (PRD), and a characteristic eight-cysteine-motif (8-CM). They have been implicated in biotic and abiotic stress responses. AZI1 is required for systemic acquired resistance and it has recently been identified as a target of the stress-induced mitogen-activated protein kinase MPK3. AZI1 gel migration properties strongly indicate AZI1 to undergo major post-translational modifications. These occur in a stress-independent manner and are unrelated to phosphorylation by MAPKs. As revealed by transient expression of AZI1 in Nicotiana benthamiana and Tropaeolum majus, the Arabidopsis protein is similarly modified in heterologous plant species. Proline-rich regions, resembling arabinogalactan proteins point to a possible proline hydroxylation and subsequent O-glycosylation of AZI1. Consistently, inhibition of prolyl hydroxylase reduces its apparent protein size. AZI1 secretion was examined using Arabidopsis protoplasts and seedling exudates. Employing Agrobacterium-mediated leaf infiltration of N. benthamiana, we attempted to assess long-distance movement of AZI1. In summary, the data point to AZI1 being a partially secreted protein and a likely new member of the group of hydroxyproline-rich glycoproteins. Its dual location suggests AZI1 to exert both intra- and extracellular functions.
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Affiliation(s)
- Andrea Pitzschke
- Department of Cell Biology, Division of Plant Physiology, University of Salzburg, Hellbrunner Strasse 34, Salzburg A-5020, Austria.
| | - Hui Xue
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna A-1190, Austria.
| | - Helene Persak
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna A-1190, Austria.
| | - Sneha Datta
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna A-1190, Austria.
| | - Georg J Seifert
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences, Muthgasse 18, Vienna A-1190, Austria.
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Li G, Ross KE, Arighi CN, Peng Y, Wu CH, Vijay-Shanker K. miRTex: A Text Mining System for miRNA-Gene Relation Extraction. PLoS Comput Biol 2015; 11:e1004391. [PMID: 26407127 PMCID: PMC4583433 DOI: 10.1371/journal.pcbi.1004391] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 06/08/2015] [Indexed: 12/27/2022] Open
Abstract
MicroRNAs (miRNAs) regulate a wide range of cellular and developmental processes through gene expression suppression or mRNA degradation. Experimentally validated miRNA gene targets are often reported in the literature. In this paper, we describe miRTex, a text mining system that extracts miRNA-target relations, as well as miRNA-gene and gene-miRNA regulation relations. The system achieves good precision and recall when evaluated on a literature corpus of 150 abstracts with F-scores close to 0.90 on the three different types of relations. We conducted full-scale text mining using miRTex to process all the Medline abstracts and all the full-length articles in the PubMed Central Open Access Subset. The results for all the Medline abstracts are stored in a database for interactive query and file download via the website at http://proteininformationresource.org/mirtex. Using miRTex, we identified genes potentially regulated by miRNAs in Triple Negative Breast Cancer, as well as miRNA-gene relations that, in conjunction with kinase-substrate relations, regulate the response to abiotic stress in Arabidopsis thaliana. These two use cases demonstrate the usefulness of miRTex text mining in the analysis of miRNA-regulated biological processes. MicroRNAs (miRNAs) are an important class of RNAs that regulate a wide range of biological processes by post-transcriptional regulation of gene expression. The amount of literature describing experimentally validated miRNA targets is increasing rapidly, which poses a challenge to researchers and biocurators to stay up-to-date with the available information. Text mining methods have been used to extract miRNA-gene associated pairs and assist in curation. In this paper, we describe miRTex, a text mining system that extracts miRNA-target, miRNA-gene regulation and gene-miRNA regulation relations. We evaluate miRTex performance on two corpora, and show that the elaborate use of lexico-syntactic information and linguistic generalizations enables it to achieve the state-of-the-art performance. We have processed the all the Medline abstracts and all the full-length articles in the PubMed Central Open Access Subset with miRTex, and provide a website to access the extraction results from all the Medline abstracts. The full-scale text mining results will be a useful resource for miRNA researchers, while the miRTex tool itself can be integrated into literature-based curation pipelines. We present two use cases (for animal and plant miRNAs, respectively) that show how the full-scale text mining can be used in combination with other bioinformatics resources to gain insight into biological processes.
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Affiliation(s)
- Gang Li
- Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America
- * E-mail:
| | - Karen E. Ross
- Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America
- Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America
| | - Cecilia N. Arighi
- Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America
| | - Yifan Peng
- Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America
| | - Cathy H. Wu
- Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America
- Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America
- Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America
| | - K. Vijay-Shanker
- Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America
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48
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Plant MYB Transcription Factors: Their Role in Drought Response Mechanisms. Int J Mol Sci 2015; 16:15811-51. [PMID: 26184177 PMCID: PMC4519927 DOI: 10.3390/ijms160715811] [Citation(s) in RCA: 229] [Impact Index Per Article: 25.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2015] [Revised: 06/18/2015] [Accepted: 06/25/2015] [Indexed: 11/17/2022] Open
Abstract
Water scarcity is one of the major causes of poor plant performance and limited crop yields worldwide and it is the single most common cause of severe food shortage in developing countries. Several molecular networks involved in stress perception, signal transduction and stress responses in plants have been elucidated so far. Transcription factors are major players in water stress signaling. In recent years, different MYB transcription factors, mainly in Arabidopsis thaliana (L.) Heynh. but also in some crops, have been characterized for their involvement in drought response. For some of them there is evidence supporting a specific role in response to water stress, such as the regulation of stomatal movement, the control of suberin and cuticular waxes synthesis and the regulation of flower development. Moreover, some of these genes have also been characterized for their involvement in other abiotic or biotic stresses, an important feature considering that in nature, plants are often simultaneously subjected to multiple rather than single environmental perturbations. This review summarizes recent studies highlighting the role of the MYB family of transcription factors in the adaptive responses to drought stress. The practical application value of MYBs in crop improvement, such as stress tolerance engineering, is also discussed.
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49
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Tsuda K, Somssich IE. Transcriptional networks in plant immunity. THE NEW PHYTOLOGIST 2015; 206:932-947. [PMID: 25623163 DOI: 10.1111/nph.13286] [Citation(s) in RCA: 287] [Impact Index Per Article: 31.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2014] [Accepted: 12/09/2014] [Indexed: 05/18/2023]
Abstract
Next to numerous abiotic stresses, plants are constantly exposed to a variety of pathogens within their environment. Thus, their ability to survive and prosper during the course of evolution was strongly dependent on adapting efficient strategies to perceive and to respond to such potential threats. It is therefore not surprising that modern plants have a highly sophisticated immune repertoire consisting of diverse signal perception and intracellular signaling pathways. This signaling network is intricate and deeply interconnected, probably reflecting the diverse lifestyles and infection strategies used by the multitude of invading phytopathogens. Moreover it allows signal communication between developmental and defense programs thereby ensuring that plant growth and fitness are not significantly retarded. How plants integrate and prioritize the incoming signals and how this information is transduced to enable appropriate immune responses is currently a major research area. An important finding has been that pathogen-triggered cellular responses involve massive transcriptional reprogramming within the host. Additional key observations emerging from such studies are that transcription factors (TFs) are often sites of signal convergence and that signal-regulated TFs act in concert with other context-specific TFs and transcriptional co-regulators to establish sensory transcription regulatory networks required for plant immunity.
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Affiliation(s)
- Kenichi Tsuda
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linne Weg 10, Cologne, 50829, Germany
| | - Imre E Somssich
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linne Weg 10, Cologne, 50829, Germany
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50
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Bigeard J, Colcombet J, Hirt H. Signaling mechanisms in pattern-triggered immunity (PTI). MOLECULAR PLANT 2015; 8:521-39. [PMID: 25744358 DOI: 10.1016/j.molp.2014.12.022] [Citation(s) in RCA: 530] [Impact Index Per Article: 58.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 12/17/2014] [Accepted: 12/30/2014] [Indexed: 05/20/2023]
Abstract
In nature, plants constantly have to face pathogen attacks. However, plant disease rarely occurs due to efficient immune systems possessed by the host plants. Pathogens are perceived by two different recognition systems that initiate the so-called pattern-triggered immunity (PTI) and effector-triggered immunity (ETI), both of which are accompanied by a set of induced defenses that usually repel pathogen attacks. Here we discuss the complex network of signaling pathways occurring during PTI, focusing on the involvement of mitogen-activated protein kinases.
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Affiliation(s)
- Jean Bigeard
- Unité de Recherche en Génomique Végétale (URGV), UMR INRA/CNRS/Université d'Evry Val d'Essonne/Saclay Plant Sciences, 2 rue Gaston Crémieux, 91057 Evry, France
| | - Jean Colcombet
- Unité de Recherche en Génomique Végétale (URGV), UMR INRA/CNRS/Université d'Evry Val d'Essonne/Saclay Plant Sciences, 2 rue Gaston Crémieux, 91057 Evry, France
| | - Heribert Hirt
- Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia.
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