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For: Kramer S, Dibbern D, Moll J, Huenninghaus M, Koller R, Krueger D, Marhan S, Urich T, Wubet T, Bonkowski M, Buscot F, Lueders T, Kandeler E. Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil. Front Microbiol 2016;7:1524. [PMID: 27725815 PMCID: PMC5035733 DOI: 10.3389/fmicb.2016.01524] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Accepted: 09/12/2016] [Indexed: 01/31/2023]  Open
Number Cited by Other Article(s)
1
Kayiranga A, Isabwe A, Yao H, Shangguan H, Coulibaly JLK, Breed M, Sun X. Distribution patterns of soil bacteria, fungi, and protists emerge from distinct assembly processes across subcommunities. Ecol Evol 2024;14:e11672. [PMID: 38988351 PMCID: PMC11236429 DOI: 10.1002/ece3.11672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 06/14/2024] [Accepted: 06/17/2024] [Indexed: 07/12/2024]  Open
2
Mendonca C, Zhang L, Waldbauer JR, Aristilde L. Disproportionate Carbon Dioxide Efflux in Bacterial Metabolic Pathways for Different Organic Substrates Leads to Variable Contribution to Carbon-Use Efficiency. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:11041-11052. [PMID: 38860668 PMCID: PMC11210201 DOI: 10.1021/acs.est.4c01328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Revised: 05/18/2024] [Accepted: 05/22/2024] [Indexed: 06/12/2024]
3
Hu Y, Zhang H, Sun X, Zhang B, Wang Y, Rafiq A, Jia H, Liang C, An S. Impact of grassland degradation on soil multifunctionality: Linking to protozoan network complexity and stability. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;929:172724. [PMID: 38663601 DOI: 10.1016/j.scitotenv.2024.172724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 04/21/2024] [Accepted: 04/22/2024] [Indexed: 04/28/2024]
4
Li H, Wang Z, Feng B, Shi J, Liao M, He K, Tian H, Megharaj M, He W. Arsenic stress on soil microbial nutrient metabolism interpreted by microbial utilization of dissolved organic carbon. JOURNAL OF HAZARDOUS MATERIALS 2024;470:134232. [PMID: 38593666 DOI: 10.1016/j.jhazmat.2024.134232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 04/02/2024] [Accepted: 04/05/2024] [Indexed: 04/11/2024]
5
Yang N, Li Y, Lin L, Niu L, Zhang W, Wang L. Transition of organic matter from allochthonous to autochthonous alters benthic nutrient dynamics via microbial food webs. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;916:170186. [PMID: 38278244 DOI: 10.1016/j.scitotenv.2024.170186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 01/08/2024] [Accepted: 01/13/2024] [Indexed: 01/28/2024]
6
He X, Xiao X, Wei W, Li L, Zhao Y, Zhang N, Wang M. Soil rare microorganisms mediated the plant cadmium uptake: The central role of protists. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;908:168505. [PMID: 37967623 DOI: 10.1016/j.scitotenv.2023.168505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/25/2023] [Accepted: 11/09/2023] [Indexed: 11/17/2023]
7
Li A, Li A, Luo C, Liu B. Assessing heavy metal contamination in Amomum villosum Lour. fruits from plantations in Southern China: Soil-fungi-plant interactions. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024;269:115789. [PMID: 38091669 DOI: 10.1016/j.ecoenv.2023.115789] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 11/14/2023] [Accepted: 12/03/2023] [Indexed: 01/12/2024]
8
Likar M, Grašič M, Stres B, Regvar M, Gaberščik A. Metagenomics reveals effects of fluctuating water conditions on functional pathways in plant litter microbial community. Sci Rep 2023;13:21741. [PMID: 38066117 PMCID: PMC10709317 DOI: 10.1038/s41598-023-49044-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 12/04/2023] [Indexed: 12/18/2023]  Open
9
Hakobyan A, Velte S, Sickel W, Quandt D, Stoll A, Knief C. Tillandsia landbeckii phyllosphere and laimosphere as refugia for bacterial life in a hyperarid desert environment. MICROBIOME 2023;11:246. [PMID: 37936139 PMCID: PMC10631034 DOI: 10.1186/s40168-023-01684-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 09/28/2023] [Indexed: 11/09/2023]
10
Jiang R, Wang M, Chen W. Heavy metal pollution triggers a shift from bacteria-based to fungi-based soil micro-food web: Evidence from an abandoned mining-smelting area. JOURNAL OF HAZARDOUS MATERIALS 2023;459:132164. [PMID: 37598513 DOI: 10.1016/j.jhazmat.2023.132164] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 07/13/2023] [Accepted: 07/25/2023] [Indexed: 08/22/2023]
11
Hartmann M, Herzog C, Brunner I, Stierli B, Meyer F, Buchmann N, Frey B. Long-term mitigation of drought changes the functional potential and life-strategies of the forest soil microbiome involved in organic matter decomposition. Front Microbiol 2023;14:1267270. [PMID: 37840720 PMCID: PMC10570739 DOI: 10.3389/fmicb.2023.1267270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 09/14/2023] [Indexed: 10/17/2023]  Open
12
Yin Y, Wang X, Hu Y, Li F, Cheng H. Insights on the assembly processes and drivers of soil microbial communities in different depth layers in an abandoned polymetallic mining district. JOURNAL OF HAZARDOUS MATERIALS 2023;458:132043. [PMID: 37453349 DOI: 10.1016/j.jhazmat.2023.132043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 07/02/2023] [Accepted: 07/10/2023] [Indexed: 07/18/2023]
13
McGuire PM, Butkevich N, Saksena AV, Walter MT, Shapleigh JP, Reid MC. Oxic-anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors. Environ Microbiol 2023;25:1696-1712. [PMID: 37105180 DOI: 10.1111/1462-2920.16387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 04/12/2023] [Indexed: 04/29/2023]
14
Prosenkov A, Cagnon C, Gallego JLR, Pelaez AI. The microbiome of a brownfield highly polluted with mercury and arsenic. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023;323:121305. [PMID: 36804142 DOI: 10.1016/j.envpol.2023.121305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 02/11/2023] [Accepted: 02/14/2023] [Indexed: 06/18/2023]
15
Wu CM, Wheeler KM, Cárcamo-Oyarce G, Aoki K, McShane A, Datta SS, Mark Welch JL, Tiemeyer M, Griffen AL, Ribbeck K. Mucin glycans drive oral microbial community composition and function. NPJ Biofilms Microbiomes 2023;9:11. [PMID: 36959210 PMCID: PMC10036478 DOI: 10.1038/s41522-023-00378-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Accepted: 02/20/2023] [Indexed: 03/25/2023]  Open
16
Teng T, Liang J, Wu Z, Jin P, Zhang D. Different phenanthrene degraders between free-cell mediated and biochar-immobilization assisted soil bioaugmentation as identified by RNA-based stable isotope probing (RNA-SIP). THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;864:161139. [PMID: 36572297 DOI: 10.1016/j.scitotenv.2022.161139] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2022] [Revised: 12/04/2022] [Accepted: 12/19/2022] [Indexed: 06/17/2023]
17
Active predation, phylogenetic diversity, and global prevalence of myxobacteria in wastewater treatment plants. THE ISME JOURNAL 2023;17:671-681. [PMID: 36774445 PMCID: PMC9919749 DOI: 10.1038/s41396-023-01378-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 01/25/2023] [Accepted: 01/31/2023] [Indexed: 02/13/2023]
18
Soil Chemistry and Soil History Significantly Structure Oomycete Communities in Brassicaceae Crop Rotations. Appl Environ Microbiol 2023;89:e0131422. [PMID: 36629416 PMCID: PMC9888183 DOI: 10.1128/aem.01314-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
19
Zhang X, Huang Z, Zhong Z, Li Q, Bian F, Yang C. Metagenomic insights into the characteristics of soil microbial communities in the decomposing biomass of Moso bamboo forests under different management practices. Front Microbiol 2022;13:1051721. [PMID: 36590390 PMCID: PMC9797724 DOI: 10.3389/fmicb.2022.1051721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 11/22/2022] [Indexed: 12/23/2022]  Open
20
Yang R, Sun W, Guo L, Li B, Wang Q, Huang D, Gao W, Xu R, Li Y. Response of soil protists to antimony and arsenic contamination. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022;315:120387. [PMID: 36223853 DOI: 10.1016/j.envpol.2022.120387] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 09/07/2022] [Accepted: 10/05/2022] [Indexed: 06/16/2023]
21
Teng T, Liang J, Zhu J, Jin P, Zhang D. Altered active pyrene degraders in biosurfactant-assisted bioaugmentation as revealed by RNA stable isotope probing. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022;313:120192. [PMID: 36126767 DOI: 10.1016/j.envpol.2022.120192] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 09/01/2022] [Accepted: 09/12/2022] [Indexed: 06/15/2023]
22
Li Y, Gao P, Sun X, Li B, Guo L, Yang R, Su X, Gao W, Xu Z, Yan G, Wang Q, Sun W. Primary Succession Changes the Composition and Functioning of the Protist Community on Mine Tailings, Especially Phototrophic Protists. ACS ENVIRONMENTAL AU 2022;2:396-408. [PMID: 37101458 PMCID: PMC10125303 DOI: 10.1021/acsenvironau.1c00066] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 04/28/2023]
23
Afridi MS, Fakhar A, Kumar A, Ali S, Medeiros FHV, Muneer MA, Ali H, Saleem M. Harnessing microbial multitrophic interactions for rhizosphere microbiome engineering. Microbiol Res 2022;265:127199. [PMID: 36137486 DOI: 10.1016/j.micres.2022.127199] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 07/02/2022] [Accepted: 09/13/2022] [Indexed: 10/14/2022]
24
Miao Y, Lin Y, Chen Z, Zheng H, Niu Y, Kuzyakov Y, Liu D, Ding W. Fungal key players of cellulose utilization: Microbial networks in aggregates of long-term fertilized soils disentangled using 13C-DNA-stable isotope probing. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;832:155051. [PMID: 35390367 DOI: 10.1016/j.scitotenv.2022.155051] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Revised: 03/07/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
25
Orozco-Mosqueda MDC, Fadiji AE, Babalola OO, Glick BR, Santoyo G. Rhizobiome engineering: Unveiling complex rhizosphere interactions to enhance plant growth and health. Microbiol Res 2022;263:127137. [PMID: 35905581 DOI: 10.1016/j.micres.2022.127137] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 06/17/2022] [Accepted: 07/13/2022] [Indexed: 12/13/2022]
26
Zhou X, Sun H, Heinonsalo J, Pumpanen J, Berninger F. Microbial biodiversity contributes to soil carbon release: A case study on fire disturbed boreal forests. FEMS Microbiol Ecol 2022;98:6617588. [PMID: 35749564 PMCID: PMC9303362 DOI: 10.1093/femsec/fiac074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 06/10/2022] [Accepted: 06/20/2022] [Indexed: 11/13/2022]  Open
27
Chen J, Yang Y, Ke Y, Chen X, Jiang X, Chen C, Xie S. Anaerobic sulfamethoxazole-degrading bacterial consortia in antibiotic-contaminated wetland sediments identified by DNA-stable isotope probing and metagenomics analysis. Environ Microbiol 2022;24:3751-3763. [PMID: 35688651 DOI: 10.1111/1462-2920.16091] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 05/31/2022] [Indexed: 11/29/2022]
28
Li Y, Yang R, Guo L, Gao W, Su P, Xu Z, Xiao H, Ma Z, Liu X, Gao P, Li B, Sun X, Yan G, Sun W. The composition, biotic network, and assembly of plastisphere protistan taxonomic and functional communities in plastic-mulching croplands. JOURNAL OF HAZARDOUS MATERIALS 2022;430:128390. [PMID: 35152106 DOI: 10.1016/j.jhazmat.2022.128390] [Citation(s) in RCA: 39] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 01/26/2022] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
29
Long-Term Compost Amendment Spurs Cellulose Decomposition by Driving Shifts in Fungal Community Composition and Promoting Fungal Diversity and Phylogenetic Relatedness. mBio 2022;13:e0032322. [PMID: 35491853 PMCID: PMC9239258 DOI: 10.1128/mbio.00323-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
30
Li Y, Wang C, Chen S. Biofertilization containing Paenibacillus triticisoli BJ‐18 alters the composition and interaction of the protistan community in the wheat rhizosphere under field conditions. J Appl Microbiol 2022;132:3746-3757. [DOI: 10.1111/jam.15485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 01/13/2022] [Accepted: 02/08/2022] [Indexed: 11/28/2022]
31
Potapov AM, Beaulieu F, Birkhofer K, Bluhm SL, Degtyarev MI, Devetter M, Goncharov AA, Gongalsky KB, Klarner B, Korobushkin DI, Liebke DF, Maraun M, Mc Donnell RJ, Pollierer MM, Schaefer I, Shrubovych J, Semenyuk II, Sendra A, Tuma J, Tůmová M, Vassilieva AB, Chen T, Geisen S, Schmidt O, Tiunov AV, Scheu S. Feeding habits and multifunctional classification of soil‐associated consumers from protists to vertebrates. Biol Rev Camb Philos Soc 2022;97:1057-1117. [DOI: 10.1111/brv.12832] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 12/31/2021] [Accepted: 01/05/2022] [Indexed: 12/17/2022]
32
Effect of AM Fungi Inoculation on Litter Bacterial Community Characteristics under Heavy Metal Stress. Microorganisms 2022;10:microorganisms10020206. [PMID: 35208661 PMCID: PMC8879951 DOI: 10.3390/microorganisms10020206] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 01/13/2022] [Accepted: 01/16/2022] [Indexed: 11/19/2022]  Open
33
Dopheide A, Davis C, Nuñez J, Rogers G, Whitehead D, Grelet GA. Depth-structuring of multi-kingdom soil communities in agricultural pastures. FEMS Microbiol Ecol 2021;97:6447534. [PMID: 34864997 DOI: 10.1093/femsec/fiab156] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 11/29/2021] [Indexed: 12/27/2022]  Open
34
Teng T, Liang J, Wu Z. Identification of pyrene degraders via DNA-SIP in oilfield soil during natural attenuation, bioaugmentation and biostimulation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;800:149485. [PMID: 34392205 DOI: 10.1016/j.scitotenv.2021.149485] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 07/30/2021] [Accepted: 08/01/2021] [Indexed: 06/13/2023]
35
Chen H, Yin C, Fan X, Ye M, Liang Y. Effect of P availability on straw-induced priming effect was mainly regulated by fungi in croplands. Appl Microbiol Biotechnol 2021;105:9403-9418. [PMID: 34837124 DOI: 10.1007/s00253-021-11691-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 11/05/2021] [Accepted: 11/08/2021] [Indexed: 01/16/2023]
36
de Andrade Reis RJ, Alves AF, Dos Santos PHD, Aguiar KP, da Rocha LO, da Silveira SF, Canellas LP, Olivares FL. Mutualistic interaction of native Serratia marcescens UENF-22GI with Trichoderma longibrachiatum UENF-F476 boosting seedling growth of tomato and papaya. World J Microbiol Biotechnol 2021;37:211. [PMID: 34729659 DOI: 10.1007/s11274-021-03179-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 10/26/2021] [Indexed: 11/28/2022]
37
Yang N, Zhang C, Wang L, Li Y, Zhang W, Niu L, Zhang H, Wang L. Nitrogen cycling processes and the role of multi-trophic microbiota in dam-induced river-reservoir systems. WATER RESEARCH 2021;206:117730. [PMID: 34619413 DOI: 10.1016/j.watres.2021.117730] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/25/2021] [Accepted: 09/27/2021] [Indexed: 06/13/2023]
38
Blagodatskaya E, Tarkka M, Knief C, Koller R, Peth S, Schmidt V, Spielvogel S, Uteau D, Weber M, Razavi BS. Bridging Microbial Functional Traits With Localized Process Rates at Soil Interfaces. Front Microbiol 2021;12:625697. [PMID: 34777265 PMCID: PMC8581545 DOI: 10.3389/fmicb.2021.625697] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 09/01/2021] [Indexed: 12/30/2022]  Open
39
Beugnon R, Du J, Cesarz S, Jurburg SD, Pang Z, Singavarapu B, Wubet T, Xue K, Wang Y, Eisenhauer N. Tree diversity and soil chemical properties drive the linkages between soil microbial community and ecosystem functioning. ISME COMMUNICATIONS 2021;1:41. [PMID: 37938251 PMCID: PMC9723754 DOI: 10.1038/s43705-021-00040-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 07/27/2021] [Accepted: 08/05/2021] [Indexed: 05/26/2023]
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Shu L, He Z, Guan X, Yang X, Tian Y, Zhang S, Wu C, He Z, Yan Q, Wang C, Shi Y. A dormant amoeba species can selectively sense and predate on different soil bacteria. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13824] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Clocchiatti A, Hannula SE, Hundscheid MPJ, Klein Gunnewiek PJA, de Boer W. Stimulated saprotrophic fungi in arable soil extend their activity to the rhizosphere and root microbiomes of crop seedlings. Environ Microbiol 2021;23:6056-6073. [PMID: 33973345 PMCID: PMC8596668 DOI: 10.1111/1462-2920.15563] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 05/05/2021] [Indexed: 11/28/2022]
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Gaiero JR, Tosi M, Bent E, Boitt G, Khosla K, Turner BL, Richardson AE, Condron LM, Dunfield KE. Soil microbial communities influencing organic phosphorus mineralization in a coastal dune chronosequence in New Zealand. FEMS Microbiol Ecol 2021;97:6145523. [PMID: 33609120 DOI: 10.1093/femsec/fiab034] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Accepted: 02/18/2021] [Indexed: 01/04/2023]  Open
43
Lerner H, Öztürk B, Dohrmann AB, Thomas J, Marchal K, De Mot R, Dehaen W, Tebbe CC, Springael D. DNA-SIP and repeated isolation corroborate Variovorax as a key organism in maintaining the genetic memory for linuron biodegradation in an agricultural soil. FEMS Microbiol Ecol 2021;97:6204700. [PMID: 33784375 DOI: 10.1093/femsec/fiab051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 03/25/2021] [Indexed: 11/14/2022]  Open
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Soil Organic Carbon Content Decreases in Both Surface and Subsoil Mineral Horizons by Simulated Future Increases in Labile Carbon Inputs in a Temperate Coniferous Forest. Ecosystems 2021. [DOI: 10.1007/s10021-021-00632-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Wang C, Xiao R, Guo Y, Wang Q, Cui Y, Xiu Y, Ma Z, Zhang M. Changes in soil microbial community composition during Phragmites australis straw decomposition in salt marshes with freshwater pumping. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;762:143996. [PMID: 33360338 DOI: 10.1016/j.scitotenv.2020.143996] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2020] [Revised: 11/04/2020] [Accepted: 11/15/2020] [Indexed: 06/12/2023]
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Competitive Exclusion and Metabolic Dependency among Microorganisms Structure the Cellulose Economy of an Agricultural Soil. mBio 2021;12:mBio.03099-20. [PMID: 33402535 PMCID: PMC8545098 DOI: 10.1128/mbio.03099-20] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
47
Hannula S, Morriën E, van der Putten W, de Boer W. Rhizosphere fungi actively assimilating plant-derived carbon in a grassland soil. FUNGAL ECOL 2020. [DOI: 10.1016/j.funeco.2020.100988] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Zhou Y, Zhang X, Yao Q, Zhu H. Both Soil Bacteria and Soil Chemical Property Affected the Micropredator Myxobacterial Community: Evidence from Natural Forest Soil and Greenhouse Rhizosphere Soil. Microorganisms 2020;8:E1387. [PMID: 32927762 PMCID: PMC7563646 DOI: 10.3390/microorganisms8091387] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 09/04/2020] [Accepted: 09/08/2020] [Indexed: 01/19/2023]  Open
49
Lerner H, Öztürk B, Dohrmann AB, Thomas J, Marchal K, De Mot R, Dehaen W, Tebbe CC, Springael D. Culture-Independent Analysis of Linuron-Mineralizing Microbiota and Functions in on-Farm Biopurification Systems via DNA-Stable Isotope Probing: Comparison with Enrichment Culture. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020;54:9387-9397. [PMID: 32569463 DOI: 10.1021/acs.est.0c02124] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
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Zhou Y, Coventry DR, Gupta VVSR, Fuentes D, Merchant A, Kaiser BN, Li J, Wei Y, Liu H, Wang Y, Gan S, Denton MD. The preceding root system drives the composition and function of the rhizosphere microbiome. Genome Biol 2020;21:89. [PMID: 32252812 PMCID: PMC7137527 DOI: 10.1186/s13059-020-01999-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2019] [Accepted: 03/12/2020] [Indexed: 02/06/2023]  Open
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