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Hou X, Alagoz Y, Welsch R, Mortimer MD, Pogson BJ, Cazzonelli CI. Reducing PHYTOENE SYNTHASE activity fine-tunes the abundance of a cis-carotene-derived signal that regulates the PIF3/HY5 module and plastid biogenesis. J Exp Bot 2024; 75:1187-1204. [PMID: 37948577 DOI: 10.1093/jxb/erad443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 11/06/2023] [Indexed: 11/12/2023]
Abstract
PHYTOENE SYNTHASE (PSY) is a rate-limiting enzyme catalysing the first committed step of carotenoid biosynthesis, and changes in PSY gene expression and/or protein activity alter carotenoid composition and plastid differentiation in plants. Four genetic variants of PSY (psy-4, psy-90, psy-130, and psy-145) were identified using a forward genetics approach that rescued leaf virescence phenotypes and plastid abnormalities displayed by the Arabidopsis CAROTENOID ISOMERASE (CRTISO) mutant ccr2 (carotenoid and chloroplast regulation 2) when grown under a shorter photoperiod. The four non-lethal mutations affected alternative splicing, enzyme-substrate interactions, and PSY:ORANGE multi-enzyme complex binding, constituting the dynamic post-transcriptional fine-tuning of PSY levels and activity without changing localization to the stroma and protothylakoid membranes. psy genetic variants did not alter total xanthophyll or β-carotene accumulation in ccr2, yet they reduced specific acyclic linear cis-carotenes linked to the biosynthesis of a currently unidentified apocarotenoid signal regulating plastid biogenesis, chlorophyll biosynthesis, and photomorphogenic regulation. ccr2 psy variants modulated the PHYTOCHROME-INTERACTING FACTOR 3/ELONGATED HYPOCOTYL 5 (PIF3/HY5) ratio, and displayed a normal prolamellar body formation in etioplasts and chlorophyll accumulation during seedling photomorphogenesis. Thus, suppressing PSY activity and impairing PSY:ORANGE protein interactions revealed how cis-carotene abundance can be fine-tuned through holoenzyme-metabolon interactions to control plastid development.
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Affiliation(s)
- Xin Hou
- ARC Training Centre for Accelerated Future Crops Development, Research School of Biology, College of Science, The Australian National University, Canberra, ACT 2601, Australia
| | - Yagiz Alagoz
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Ralf Welsch
- Faculty of Biology II, University of Freiburg, D-79104 Freiburg, Germany
| | - Matthew D Mortimer
- ARC Training Centre for Accelerated Future Crops Development, Research School of Biology, College of Science, The Australian National University, Canberra, ACT 2601, Australia
| | - Barry J Pogson
- ARC Training Centre for Accelerated Future Crops Development, Research School of Biology, College of Science, The Australian National University, Canberra, ACT 2601, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
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2
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Kerr SC, Shehnaz S, Paudel L, Manivannan MS, Shaw LM, Johnson A, Velasquez JTJ, Tanurdžić M, Cazzonelli CI, Varkonyi-Gasic E, Prentis PJ. Advancing tree genomics to future proof next generation orchard production. Front Plant Sci 2024; 14:1321555. [PMID: 38312357 PMCID: PMC10834703 DOI: 10.3389/fpls.2023.1321555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Accepted: 12/26/2023] [Indexed: 02/06/2024]
Abstract
The challenges facing tree orchard production in the coming years will be largely driven by changes in the climate affecting the sustainability of farming practices in specific geographical regions. Identifying key traits that enable tree crops to modify their growth to varying environmental conditions and taking advantage of new crop improvement opportunities and technologies will ensure the tree crop industry remains viable and profitable into the future. In this review article we 1) outline climate and sustainability challenges relevant to horticultural tree crop industries, 2) describe key tree crop traits targeted for improvement in agroecosystem productivity and resilience to environmental change, and 3) discuss existing and emerging genomic technologies that provide opportunities for industries to future proof the next generation of orchards.
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Affiliation(s)
- Stephanie C Kerr
- School of Biology and Environmental Science, Queensland University of Technology (QUT), Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, QLD, Australia
| | - Saiyara Shehnaz
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
| | - Lucky Paudel
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Mekaladevi S Manivannan
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Lindsay M Shaw
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, QLD, Australia
- School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD, Australia
| | - Amanda Johnson
- School of Biology and Environmental Science, Queensland University of Technology (QUT), Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, QLD, Australia
| | - Jose Teodoro J Velasquez
- School of Biology and Environmental Science, Queensland University of Technology (QUT), Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, QLD, Australia
| | - Miloš Tanurdžić
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
| | | | - Erika Varkonyi-Gasic
- The New Zealand Institute for Plant and Food Research Limited, Auckland, New Zealand
| | - Peter J Prentis
- School of Biology and Environmental Science, Queensland University of Technology (QUT), Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, QLD, Australia
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Maier CR, Chavan SG, Klause N, Liang W, Cazzonelli CI, Ghannoum O, Chen ZH, Tissue DT. Light blocking film in a glasshouse impacts Capsicum annuum L. yield differentially across planting season. Front Plant Sci 2023; 14:1277037. [PMID: 38179477 PMCID: PMC10766360 DOI: 10.3389/fpls.2023.1277037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Accepted: 11/08/2023] [Indexed: 01/06/2024]
Abstract
High energy costs are a barrier to producing high-quality produce at protected cropping facilities. A potential solution to mitigate high energy costs is film technology, which blocks heat-producing radiation; however, the alteration of the light environment by these films may impact crop yield and quality. Previous studies have assessed the impact of ULR 80 [i.e., light-blocking film (LBF)] on crop yield and photosynthetically active radiation (PAR); however, an assessment of the spectral environment over different seasons is important to understand potential crop impacts through different developmental phases. In this study, two varieties (red and orange) of Capsicum annuum were grown across two crop cycles: one cycle with primary crop growth in the autumn (i.e., autumn experiment [AE]) and the other with primary crop growth in the summer (i.e., summer experiment [SE]). LBF reduced PAR (roof level: 26%-30%, plant canopy level: 8%-25%) and net radiation (36%-66%). LBF also reduced total diffuse PAR (AE: 8%, SE: 15%), but the diffuse fraction of PAR increased by 7% and 9% for AE and SE, respectively, potentially resulting in differential light penetration throughout the canopy across treatments. LBF reduced near-infrared radiation (700 nm-2,500 nm), including far-red (700 nm-780 nm) at mid- and lower-canopy levels. LBF significantly altered light quantity and quality, which determined the amount of time that the crop grew under light-limited (<12 mol m-2 d-1) versus sufficient light conditions. In AE, crops were established and grown under light-limited conditions for 57% of the growing season, whereas in SE, crops were established and grown under sufficient light conditions for 66% of the growing season. Overall, LBF significantly reduced the yield in SE for both varieties (red: 29%; orange: 16%), but not in AE. The light changes in different seasons in response to LBF suggest that planting time is crucial for maximizing fruit yield when grown under a film that reduces light quantity. LBF may be unsuitable for year-round production of capsicum, and additional development of LBF is required for the film to be beneficial for saving energy during production and sustaining good crop yields in protected cropping.
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Affiliation(s)
- Chelsea R. Maier
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
| | - Sachin G. Chavan
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Norbert Klause
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
| | - Weiguang Liang
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
| | - Christopher I. Cazzonelli
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Oula Ghannoum
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Zhong-Hua Chen
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- School of Science, Western Sydney University, Penrith, NSW, Australia
| | - David T. Tissue
- National Vegetable Protected Cropping Centre, Western Sydney University, Penrith, NSW, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- Global Centre for Land-Based Innovation, Western Sydney University, Penrith, NSW, Australia
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He X, Solis CA, Chavan SG, Maier C, Wang Y, Liang W, Klause N, Ghannoum O, Cazzonelli CI, Tissue DT, Chen ZH. Novel transcriptome networks are associated with adaptation of capsicum fruit development to a light-blocking glasshouse film. Front Plant Sci 2023; 14:1280314. [PMID: 38023880 PMCID: PMC10658010 DOI: 10.3389/fpls.2023.1280314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Accepted: 10/13/2023] [Indexed: 12/01/2023]
Abstract
Light-blocking films (LBFs) can contribute to significant energy savings for protected cropping via altering light transmitting, such as UVA, photosynthetically active radiation, blue and red spectra affecting photosynthesis, and capsicum yield. Here, we investigated the effects of LBF on orange color capsicum (O06614, Capsicum annuum L.) fruit transcriptome at 35 (mature green) and 65 (mature ripe) days after pollination (DAP) relative to untreated control in a high-technology glasshouse. The results of targeted metabolites showed that LBF significantly promotes the percentage of lutein but decreased the percentage of zeaxanthin and neoxanthin only at 35 DAP. At 35 DAP, fruits were less impacted by LBF treatment (versus control) with a total of 1,192 differentially expressed genes (DEGs) compared with that at 65 DAP with 2,654 DEGs. Response to stress and response to light stimulus in biological process of Gene Ontology were found in 65-DAP fruits under LBF vs. control, and clustering analysis revealed a predominant role of light receptors and phytohormone signaling transduction as well as starch and sucrose metabolism in LBF adaptation. The light-signaling DEGs, UV light receptor UVR8, transcription factors phytochrome-interacting factor 4 (PIF4), and an E3 ubiquitin ligase (COP1) were significantly downregulated at 65 DAP. Moreover, key DEGs in starch and sucrose metabolism (SUS, SUC, and INV), carotenoid synthesis (PSY2 and BCH1), ascorbic acid biosynthesis (VTC2, AAO, and GME), abscisic acid (ABA) signaling (NCED3, ABA2, AO4, and PYL2/4), and phenylpropanoid biosynthesis (PAL and DFR) are important for the adaptation of 65-DAP fruits to LBF. Our results provide new candidate genes for improving quality traits of low-light adaptation of capsicum in protected cropping.
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Affiliation(s)
- Xin He
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Celymar A. Solis
- School of Science, Western Sydney University, Penrith, NSW, Australia
| | - Sachin G. Chavan
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Chelsea Maier
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Yuanyuan Wang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Weiguang Liang
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Norbert Klause
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Oula Ghannoum
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Christopher I. Cazzonelli
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - David T. Tissue
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- Global Centre for Land Based Innovation, Western Sydney University, Richmond, NSW, Australia
| | - Zhong-Hua Chen
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- School of Science, Western Sydney University, Penrith, NSW, Australia
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5
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Biru FN, Cazzonelli CI, Elbaum R, Johnson SN. Silicon-mediated herbivore defence in a pasture grass under reduced and Anthropocene levels of CO 2. Front Plant Sci 2023; 14:1268043. [PMID: 38023935 PMCID: PMC10646432 DOI: 10.3389/fpls.2023.1268043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 10/17/2023] [Indexed: 12/01/2023]
Abstract
The uptake and accumulation of silicon (Si) in grass plants play a crucial role in alleviating both biotic and abiotic stresses. Si supplementation has been reported to increase activity of defence-related antioxidant enzyme, which helps to reduce oxidative stress caused by reactive oxygen species (ROS) following herbivore attack. Atmospheric CO2 levels are known to affect Si accumulation in grasses; reduced CO2 concentrations increase Si accumulation whereas elevated CO2 concentrations often decrease Si accumulation. This can potentially affect antioxidant enzyme activity and subsequently insect herbivory, but this remains untested. We examined the effects of Si supplementation and herbivory by Helicoverpa armigera on antioxidant enzyme (catalase, CAT; superoxide dismutase, SOD; and ascorbate peroxidase, APX) activity in tall fescue grass (Festuca arundinacea) grown under CO2 concentrations of 200, 410, and 640 ppm representing reduced, ambient, and elevated CO2 levels, respectively. We also quantified foliar Si, carbon (C), and nitrogen (N) concentrations and determined how changes in enzymes and elemental chemistry affected H. armigera relative growth rates and plant consumption. Rising CO2 concentrations increased plant mass and foliar C but decreased foliar N and Si. Si supplementation enhanced APX and SOD activity under the ranging CO2 regimes. Si accumulation and antioxidant enzyme activity were at their highest level under reduced CO2 conditions and their lowest level under future levels of CO2. The latter corresponded with increased herbivore growth rates and plant consumption, suggesting that some grasses could become more susceptible to herbivory under projected CO2 conditions.
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Affiliation(s)
- Fikadu N. Biru
- College of Agriculture and Veterinary Medicine, Jimma University, Jimma, Ethiopia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | | | - Rivka Elbaum
- R H Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Scott N. Johnson
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
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6
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Nayak JJ, Anwar S, Krishna P, Chen ZH, Plett JM, Foo E, Cazzonelli CI. Tangerine tomato roots show increased accumulation of acyclic carotenoids, less abscisic acid, drought sensitivity, and impaired endomycorrhizal colonization. Plant Sci 2022; 321:111308. [PMID: 35696908 DOI: 10.1016/j.plantsci.2022.111308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 04/13/2022] [Accepted: 04/29/2022] [Indexed: 06/15/2023]
Abstract
The Heirloom Golden tangerine tomato fruit variety is highly nutritious due to accumulation of tetra-cis-lycopene, that has a higher bioavailability and recognised health benefits in treating anti-inflammatory diseases compared to all-trans-lycopene isomers found in red tomatoes. We investigated if photoisomerization of tetra-cis-lycopene occurs in roots of the MicroTom tangerine (tangmic) tomato and how this affects root to shoot biomass, mycorrhizal colonization, abscisic acid accumulation, and responses to drought. tangmic plants grown in soil under glasshouse conditions displayed a reduction in height, number of flowers, fruit yield, and root length compared to wild-type (WT). Soil inoculation with Rhizophagus irregularis revealed fewer arbuscules and other fungal structures in the endodermal cells of roots in tangmic relative to WT. The roots of tangmic hyperaccumulated acyclic cis-carotenes, while only trace levels of xanthophylls and abscisic acid were detected. In response to a water deficit, leaves from the tangmic plants displayed a rapid decline in maximum quantum yield of photosystem II compared to WT, indicating a defective root to shoot signalling response to drought. The lack of xanthophylls biosynthesis in tangmic roots reduced abscisic acid levels, thereby likely impairing endomycorrhizal colonisation and drought-induced root to shoot signalling.
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Affiliation(s)
- Jwalit J Nayak
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Sidra Anwar
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Priti Krishna
- School of Science, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Zhong-Hua Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; School of Science, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Jonathan M Plett
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Eloise Foo
- School of Natural Sciences, University of Tasmania, Private Bag 55, Hobart, TAS, 7001, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia.
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He X, Chavan SG, Hamoui Z, Maier C, Ghannoum O, Chen ZH, Tissue DT, Cazzonelli CI. Smart Glass Film Reduced Ascorbic Acid in Red and Orange Capsicum Fruit Cultivars without Impacting Shelf Life. Plants 2022; 11:plants11070985. [PMID: 35406965 PMCID: PMC9003265 DOI: 10.3390/plants11070985] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 03/31/2022] [Accepted: 04/01/2022] [Indexed: 11/27/2022]
Abstract
Smart Glass Film (SGF) is a glasshouse covering material designed to permit 80% transmission of photosynthetically active light and block heat-generating solar energy. SGF can reduce crop water and nutrient consumption and improve glasshouse energy use efficiency yet can reduce crop yield. The effect of SGF on the postharvest shelf life of fruits remains unknown. Two capsicum varieties, Red (Gina) and Orange (O06614), were cultivated within a glasshouse covered in SGF to assess fruit quality and shelf life during the winter season. SGF reduced cuticle thickness in the Red cultivar (5%) and decreased ascorbic acid in both cultivars (9–14%) without altering the overall morphology of the mature fruits. The ratio of total soluble solids (TSSs) to titratable acidity (TA) was significantly higher in Red (29%) and Orange (89%) cultivars grown under SGF. The Red fruits had a thicker cuticle that reduced water loss and extended shelf life when compared to the Orange fruits, yet neither water loss nor firmness were impacted by SGF. Reducing the storage temperature to 2 °C and increasing relative humidity to 90% extended the shelf life in both cultivars without evidence of chilling injury. In summary, SGF had minimal impact on fruit development and postharvest traits and did not compromise the shelf life of mature fruits. SGF provides a promising technology to block heat-generating solar radiation energy without affecting fruit ripening and marketable quality of capsicum fruits grown during the winter season.
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Affiliation(s)
- Xin He
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
| | - Sachin G. Chavan
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
| | - Ziad Hamoui
- School of Science, Western Sydney University, Penrith, NSW 2751, Australia;
| | - Chelsea Maier
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
| | - Oula Ghannoum
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
| | - Zhong-Hua Chen
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
- School of Science, Western Sydney University, Penrith, NSW 2751, Australia;
| | - David T. Tissue
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
- Global Centre for Land Based Innovation, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
| | - Christopher I. Cazzonelli
- National Vegetable Protected Cropping Centre, Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia; (X.H.); (S.G.C.); (C.M.); (O.G.); (Z.-H.C.); (D.T.T.)
- Correspondence: ; Tel.: +61-24-570-1752
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Brenya E, Pervin M, Chen ZH, Tissue DT, Johnson S, Braam J, Cazzonelli CI. Mechanical stress acclimation in plants: Linking hormones and somatic memory to thigmomorphogenesis. Plant Cell Environ 2022; 45:989-1010. [PMID: 34984703 DOI: 10.1111/pce.14252] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 12/03/2021] [Accepted: 12/09/2021] [Indexed: 06/14/2023]
Abstract
A single event of mechanical stimulation is perceived by mechanoreceptors that transduce rapid transient signalling to regulate gene expression. Prolonged mechanical stress for days to weeks culminates in cellular changes that strengthen the plant architecture leading to thigmomorphogenesis. The convergence of multiple signalling pathways regulates mechanically induced tolerance to numerous biotic and abiotic stresses. Emerging evidence showed prolonged mechanical stimulation can modify the baseline level of gene expression in naive tissues, heighten gene expression, and prime disease resistance upon a subsequent pathogen encounter. The phenotypes of thigmomorphogenesis can persist throughout growth without continued stimulation, revealing somatic-stress memory. Epigenetic processes regulate TOUCH gene expression and could program transcriptional memory in differentiating cells to program thigmomorphogenesis. We discuss the early perception, gene regulatory and phytohormone pathways that facilitate thigmomorphogenesis and mechanical stress acclimation in Arabidopsis and other plant species. We provide insights regarding: (1) the regulatory mechanisms induced by single or prolonged events of mechanical stress, (2) how mechanical stress confers transcriptional memory to induce cross-acclimation to future stress, and (3) why thigmomorphogenesis might resemble an epigenetic phenomenon. Deeper knowledge of how prolonged mechanical stimulation programs somatic memory and primes defence acclimation could transform solutions to improve agricultural sustainability in stressful environments.
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Affiliation(s)
- Eric Brenya
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
- Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA
| | - Mahfuza Pervin
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
| | - Zhong-Hua Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
- School of Science, Western Sydney University, Richmond, New South Wales, Australia
| | - David T Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
| | - Scott Johnson
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
| | - Janet Braam
- Department of Biosciences, Rice University, Houston, Texas, USA
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, New South Wales, Australia
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Dhami N, Pogson BJ, Tissue DT, Cazzonelli CI. A foliar pigment-based bioassay for interrogating chloroplast signalling revealed that carotenoid isomerisation regulates chlorophyll abundance. Plant Methods 2022; 18:18. [PMID: 35177117 PMCID: PMC8851705 DOI: 10.1186/s13007-022-00847-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 01/18/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Some plastid-derived metabolites can control nuclear gene expression, chloroplast biogenesis, and chlorophyll biosynthesis. For example, norflurazon (NFZ) induced inhibition of carotenoid biosynthesis in leaves elicits a protoporphyrin IX (Mg-ProtoIX) retrograde signal that controls chlorophyll biosynthesis and chloroplast development. Carotenoid cleavage products, known as apocarotenoids, also regulate plastid development. The key steps in carotenoid biosynthesis or catabolism that can regulate chlorophyll biosynthesis in leaf tissues remain unclear. Here, we established a foliar pigment-based bioassay using Arabidopsis rosette leaves to investigate plastid signalling processes in young expanding leaves comprising rapidly dividing and expanding cells containing active chloroplast biogenesis. RESULTS We demonstrate that environmental treatments (extended darkness and cold exposure) as well as chemical (norflurazon; NFZ) inhibition of carotenoid biosynthesis, reduce chlorophyll levels in young, but not older leaves of Arabidopsis. Mutants with disrupted xanthophyll accumulation, apocarotenoid phytohormone biosynthesis (abscisic acid and strigolactone), or enzymatic carotenoid cleavage, did not alter chlorophyll levels in young or old leaves. However, perturbations in acyclic cis-carotene biosynthesis revealed that disruption of CAROTENOID ISOMERASE (CRTISO), but not ZETA-CAROTENE ISOMERASE (Z-ISO) activity, reduced chlorophyll levels in young leaves of Arabidopsis plants. NFZ-induced inhibition of PHYTOENE DESATURASE (PDS) activity caused higher phytoene accumulation in younger crtiso leaves compared to WT indicating a continued substrate supply from the methylerythritol 4-phosphate (MEP) pathway. CONCLUSION The Arabidopsis foliar pigment-based bioassay can be used to differentiate signalling events elicited by environmental change, chemical treatment, and/or genetic perturbation, and determine how they control chloroplast biogenesis and chlorophyll biosynthesis. Genetic perturbations that impaired xanthophyll biosynthesis and/or carotenoid catabolism did not affect chlorophyll biosynthesis. The lack of CAROTENOID ISOMERISATION reduced chlorophyll accumulation, but not phytoene biosynthesis in young leaves of Arabidopsis plants growing under a long photoperiod. Findings generated using the newly customised foliar pigment-based bioassay implicate that carotenoid isomerase activity and NFZ-induced inhibition of PDS activity elicit different signalling pathways to control chlorophyll homeostasis in young leaves of Arabidopsis.
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Affiliation(s)
- N Dhami
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
- School of Health and Allied Sciences, Pokhara University, Pokhara 30, Kaski, Gandaki, 33700, Nepal
| | - B J Pogson
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - D T Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - C I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, 2751, Australia.
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10
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Paudel L, Kerr S, Prentis P, Tanurdžić M, Papanicolaou A, Plett JM, Cazzonelli CI. Horticultural innovation by viral-induced gene regulation of carotenogenesis. Hortic Res 2022; 9:uhab008. [PMID: 35043183 PMCID: PMC8769041 DOI: 10.1093/hr/uhab008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 08/31/2021] [Accepted: 09/24/2021] [Indexed: 06/14/2023]
Abstract
Multipartite viral vectors provide a simple, inexpensive and effective biotechnological tool to transiently manipulate (i.e. reduce or increase) gene expression in planta and characterise the function of genetic traits. The development of virus-induced gene regulation (VIGR) systems usually involve the targeted silencing or overexpression of genes involved in pigment biosynthesis or degradation in plastids, thereby providing rapid visual assessment of success in establishing RNA- or DNA-based VIGR systems in planta. Carotenoids pigments provide plant tissues with an array of yellow, orange, and pinkish-red colours. VIGR-induced transient manipulation of carotenoid-related gene expression has advanced our understanding of carotenoid biosynthesis, regulation, accumulation and degradation, as well as plastid signalling processes. In this review, we describe mechanisms of VIGR, the importance of carotenoids as visual markers of technology development, and knowledge gained through manipulating carotenogenesis in model plants as well as horticultural crops not always amenable to transgenic approaches. We outline how VIGR can be utilised in plants to fast-track the characterisation of gene function(s), accelerate fruit tree breeding programs, edit genomes, and biofortify plant products enriched in carotenoid micronutrients for horticultural innovation.
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Affiliation(s)
- Lucky Paudel
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith NSW 2751, Australia
| | - Stephanie Kerr
- Centre for Agriculture and the Bioeconomy (CAB), Queensland University of Technology, 2 George Street, Brisbane City, QLD 4000, Australia
- School of Biology and Environmental Sciences, Faculty of Science,
Queensland University of Technology, 2 George Street, Brisbane, QLD 4000, Australia
| | - Peter Prentis
- Centre for Agriculture and the Bioeconomy (CAB), Queensland University of Technology, 2 George Street, Brisbane City, QLD 4000, Australia
- School of Biology and Environmental Sciences, Faculty of Science,
Queensland University of Technology, 2 George Street, Brisbane, QLD 4000, Australia
| | - Miloš Tanurdžić
- School of Biological Sciences, The University of Queensland, St Lucia, QLD 4072, Australia
| | - Alexie Papanicolaou
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith NSW 2751, Australia
| | - Jonathan M Plett
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith NSW 2751, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith NSW 2751, Australia
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11
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Hill RA, Wong-Bajracharya J, Anwar S, Coles D, Wang M, Lipzen A, Ng V, Grigoriev IV, Martin F, Anderson IC, Cazzonelli CI, Jeffries T, Plett KL, Plett JM. Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus. New Phytol 2022; 233:966-982. [PMID: 34699614 DOI: 10.1111/nph.17825] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 10/20/2021] [Indexed: 06/13/2023]
Abstract
The pathways regulated in ectomycorrhizal (EcM) plant hosts during the establishment of symbiosis are not as well understood when compared to the functional stages of this mutualistic interaction. Our study used the EcM host Eucalyptus grandis to elucidate symbiosis-regulated pathways across the three phases of this interaction. Using a combination of RNA sequencing and metabolomics we studied both stage-specific and core responses of E. grandis during colonization by Pisolithus microcarpus. Using exogenous manipulation of the abscisic acid (ABA), we studied the role of this pathway during symbiosis establishment. Despite the mutualistic nature of this symbiosis, a large number of disease signalling TIR-NBS-LRR genes were induced. The transcriptional regulation in E. grandis was found to be dynamic across colonization with a small core of genes consistently regulated at all stages. Genes associated to the carotenoid/ABA pathway were found within this core and ABA concentrations increased during fungal integration into the root. Supplementation of ABA led to improved accommodation of P. microcarpus into E. grandis roots. The carotenoid pathway is a core response of an EcM host to its symbiont and highlights the need to understand the role of the stress hormone ABA in controlling host-EcM fungal interactions.
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Affiliation(s)
- Richard A Hill
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Johanna Wong-Bajracharya
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
- Elizabeth Macarthur Agricultural Institute, New South Wales Department of Primary Industries, Menangle, NSW, 2568, Australia
| | - Sidra Anwar
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Donovin Coles
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Mei Wang
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Anna Lipzen
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Vivian Ng
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Igor V Grigoriev
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720, USA
| | - Francis Martin
- INRAE, UMR Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE GrandEst-Nancy, Université de Lorraine, 54280, Champenoux, France
| | - Ian C Anderson
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Thomas Jeffries
- School of Science, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Krista L Plett
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
- Elizabeth Macarthur Agricultural Institute, New South Wales Department of Primary Industries, Menangle, NSW, 2568, Australia
| | - Jonathan M Plett
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
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12
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Anwar S, Nayak JJ, Alagoz Y, Wojtalewicz D, Cazzonelli CI. Purification and use of carotenoid standards to quantify cis-trans geometrical carotenoid isomers in plant tissues. Methods Enzymol 2022; 670:57-85. [DOI: 10.1016/bs.mie.2022.01.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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13
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Waterman JM, Cibils-Stewart X, Cazzonelli CI, Hartley SE, Johnson SN. Short-term exposure to silicon rapidly enhances plant resistance to herbivory. Ecology 2021; 102:e03438. [PMID: 34139023 DOI: 10.1002/ecy.3438] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 04/29/2021] [Accepted: 05/25/2021] [Indexed: 01/17/2023]
Abstract
Silicon (Si) can adversely affect insect herbivores, particularly in plants that evolved the ability to accumulate large quantities of Si. Very rapid herbivore-induced accumulation of Si has recently been demonstrated, but the level of protection against herbivory this affords plants remains unknown. Brachypodium distachyon, a model Si hyperaccumulating grass, was exposed to the chewing herbivore, Helicoverpa armigera, and grown under three conditions: supplied Si over 34 d (+Si), not supplied Si (-Si), or supplied Si once herbivory began (-Si → +Si). We evaluated the effectiveness of each Si treatment at reducing herbivore performance and measured Si-based defenses and phenolics (another form of defense often reduced by Si). Although Si concentrations remained lower, within 72 h of exposure to Si, -Si → +Si plants were as resistant to herbivory as +Si plants. Both +Si and -Si → +Si treatments reduced herbivore damage and growth, and increased mandible wear compared to -Si. After 6 h, herbivory increased filled Si cell density in -Si → +Si plants, and within 24 h, -Si → +Si plants reached similar filled Si cell densities to +Si plants, although decreased phenolics only occurred in +Si plants. We demonstrate that plants with short-term Si exposure can rapidly accumulate Si-based antiherbivore defenses as effectively as plants with long-term exposure.
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Affiliation(s)
- Jamie M Waterman
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales, 2751, Australia
| | - Ximena Cibils-Stewart
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales, 2751, Australia.,Instituto Nacional de Investigación Agropecuaria (INIA), La Estanzuela Research Station, Ruta 50, Km. 11, Colonia, Uruguay
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales, 2751, Australia
| | - Susan E Hartley
- Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK
| | - Scott N Johnson
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales, 2751, Australia
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14
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Biru FN, Islam T, Cibils-Stewart X, Cazzonelli CI, Elbaum R, Johnson SN. Anti-herbivore silicon defences in a model grass are greatest under Miocene levels of atmospheric CO 2. Glob Chang Biol 2021; 27:2959-2969. [PMID: 33772982 DOI: 10.1111/gcb.15619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 03/12/2021] [Indexed: 06/12/2023]
Abstract
Silicon (Si) has an important role in mitigating diverse biotic and abiotic stresses in plants, mainly via the silicification of plant tissues. Environmental changes such as atmospheric CO2 concentrations may affect grass Si concentrations which, in turn, can alter herbivore performance. We recently demonstrated that pre-industrial atmospheric CO2 increased Si accumulation in Brachypodium distachyon grass, yet the patterns of Si deposition in leaves and whether this affects insect herbivore performance remains unknown. Moreover, it is unclear whether CO2 -driven changes in Si accumulation are linked to changes in gas exchange (e.g. transpiration rates). We therefore investigated how pre-industrial (reduced; rCO2 , 200 ppm), ambient (aCO2 , 410 ppm) and elevated (eCO2 , 640 ppm) CO2 concentrations, in combination with Si-treatment (Si+ or Si-), affected Si accumulation in B. distachyon and its subsequent effect on the performance of the global insect pest, Helicoverpa armigera. rCO2 increased Si concentrations by 29% and 36% compared to aCO2 and eCO2 respectively. These changes were not related to observed changes in gas exchange under different CO2 regimes, however. The increased Si accumulation under rCO2 decreased herbivore relative growth rate (RGR) by 120% relative to eCO2, whereas rCO2 caused herbivore RGR to decrease by 26% compared to eCO2 . Si supplementation also increased the density of macrohairs, silica and prickle cells, which was associated with reduced herbivore performance. There was a negative correlation among macrohair density, silica cell density, prickle cell density and herbivore RGR under rCO2 suggesting that these changes in leaf surface morphology were linked to reduced performance under this CO2 regime. To our knowledge, this is the first study to demonstrate that increased Si accumulation under pre-industrial CO2 reduces insect herbivore performance. Contrastingly, we found reduced Si accumulation under higher CO2 , which suggests that some grasses may become more susceptible to insect herbivores under projected climate change scenarios.
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Affiliation(s)
- Fikadu N Biru
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- College of Agriculture and Veterinary Medicine, Jimma University, Jimma, Ethiopia
| | - Tarikul Islam
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- Department of Entomology, Faculty of Agriculture, Bangladesh Agricultural University, Mymensingh, Bangladesh
| | - Ximena Cibils-Stewart
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
- Instituto Nacional de Investigación Agropecuaria (INIA), Colonia, Uruguay
| | | | - Rivka Elbaum
- R H Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Scott N Johnson
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
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15
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Zhao C, Chavan S, He X, Zhou M, Cazzonelli CI, Chen ZH, Tissue DT, Ghannoum O. Smart glass impacts stomatal sensitivity of greenhouse Capsicum through altered light. J Exp Bot 2021; 72:3235-3248. [PMID: 33484266 DOI: 10.1093/jxb/erab028] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 01/19/2021] [Indexed: 06/12/2023]
Abstract
Optical films that alter light transmittance may reduce energy consumption in high-tech greenhouses, but their impact on crop physiology remains unclear. We compared the stomatal responses of Capsicum plants grown hydroponically under control glass (70% diffuse light) or the smart glass (SG) film ULR-80, which blocked >50% of short-wave radiation and ~9% of photosynthetically active radiation (PAR). SG had no significant effects on steady-state (gs) or maximal (gmax) stomatal conductance. In contrast, SG reduced stomatal pore size and sensitivity to exogenous abscisic acid (ABA), thereby increasing rates of leaf water loss, guard cell K+ and Cl- efflux, and Ca2+ influx. SG induced faster stomatal closing and opening rates on transition between low (100 µmol m-2 s-1) and high PAR (1500 µmol m-2 s-1), which compromised water use efficiency relative to control plants. The fraction of blue light (0% or 10%) did not affect gs in either treatment. Increased expression of stomatal closure and photoreceptor genes in epidermal peels of SG plants is consistent with fast stomatal responses to light changes. In conclusion, stomatal responses of Capsicum to SG were more affected by changes in light intensity than spectral quality, and re-engineering of the SG should maximize PAR transmission, and hence CO2 assimilation.
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Affiliation(s)
- Chenchen Zhao
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- School of Science, Western Sydney University, Penrith, NSW 2753, Australia
- Tasmanian Institute of Agriculture, University of Tasmania, Prospect, TAS, 7250, Australia
| | - Sachin Chavan
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- National Vegetable Protected Cropping Centre, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
| | - Xin He
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- National Vegetable Protected Cropping Centre, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Prospect, TAS, 7250, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- National Vegetable Protected Cropping Centre, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
| | - Zhong-Hua Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- School of Science, Western Sydney University, Penrith, NSW 2753, Australia
- National Vegetable Protected Cropping Centre, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
| | - David T Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- National Vegetable Protected Cropping Centre, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
| | - Oula Ghannoum
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- National Vegetable Protected Cropping Centre, Western Sydney University, Hawkesbury Campus, Richmond, NSW 2753, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
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16
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Biru FN, Cazzonelli CI, Elbaum R, Johnson SN. Contrasting effects of Miocene and Anthropocene levels of atmospheric CO 2 on silicon accumulation in a model grass. Biol Lett 2020; 16:20200608. [PMID: 33232651 DOI: 10.1098/rsbl.2020.0608] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Grasses are hyper-accumulators of silicon (Si), which they acquire from the soil and deposit in tissues to resist environmental stresses. Given the high metabolic costs of herbivore defensive chemicals and structural constituents (e.g. cellulose), grasses may substitute Si for these components when carbon is limited. Indeed, high Si uptake grasses evolved in the Miocene when atmospheric CO2 concentration was much lower than present levels. It is, however, unknown how pre-industrial CO2 concentrations affect Si accumulation in grasses. Using Brachypodium distachyon, we hydroponically manipulated Si-supply (0.0, 0.5, 1, 1.5, 2 mM) and grew plants under Miocene (200 ppm) and Anthropocene levels of CO2 comprising ambient (410 ppm) and elevated (640 ppm) CO2 concentrations. We showed that regardless of Si treatments, the Miocene CO2 levels increased foliar Si concentrations by 47% and 56% relative to plants grown under ambient and elevated CO2, respectively. This is owing to higher accumulation overall, but also the reallocation of Si from the roots into the shoots. Our results suggest that grasses may accumulate high Si concentrations in foliage when carbon is less available (i.e. pre-industrial CO2 levels) but this is likely to decline under future climate change scenarios, potentially leaving grasses more susceptible to environmental stresses.
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Affiliation(s)
- Fikadu N Biru
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales 2751, Australia.,College of Agriculture and Veterinary Medicine, Jimma University, Jimma 307, Ethiopia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales 2751, Australia
| | - Rivka Elbaum
- R H Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Scott N Johnson
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, New South Wales 2751, Australia
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17
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Waterman JM, Hall CR, Mikhael M, Cazzonelli CI, Hartley SE, Johnson SN. Short‐term resistance that persists: Rapidly induced silicon anti‐herbivore defence affects carbon‐based plant defences. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13702] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jamie M. Waterman
- Hawkesbury Institute for the EnvironmentWestern Sydney University Richmond NSW Australia
| | - Casey R. Hall
- Hawkesbury Institute for the EnvironmentWestern Sydney University Richmond NSW Australia
| | - Meena Mikhael
- School of Medicine Western Sydney University Campbelltown NSW Australia
| | | | | | - Scott N. Johnson
- Hawkesbury Institute for the EnvironmentWestern Sydney University Richmond NSW Australia
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18
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Dhami N, Cazzonelli CI. Prolonged cold exposure to Arabidopsis juvenile seedlings extends vegetative growth and increases the number of shoot branches. Plant Signal Behav 2020; 15:1789320. [PMID: 32631114 PMCID: PMC8550187 DOI: 10.1080/15592324.2020.1789320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 06/22/2020] [Accepted: 06/25/2020] [Indexed: 06/11/2023]
Abstract
Environmental factors such as photoperiod, temperature, phytohormones, sugars, and soil nutrients can affect the development of axillary meristems and emergence of shoot branches in plants. We investigated how an extended period of cold exposure to Arabidopsis plants before and after inflorescence meristem differentiation would affect plant growth and shoot branching. The number of rosette leaves and shoot branches increased when wild type (WT) juvenile seedlings, but not adult plants, were subjected to a prolonged cold exposure (10/7°C day/night cycle). As the duration of cold exposure to WT juvenile seedlings increased, so too did the rosette area, number of leaves, and rosette branches revealing an extended period of vegetative growth. The prolonged cold treatment also increased the primary inflorescence stem height and number of cauline branches in WT plants revealing a delay in reproductive development that could be altered by early (set domain group 8; sdg8) and late (methyltransferase 1; met1) flowering mutants. The axillary buds/leaf and rosette branches/leaf ratios declined significantly in WT, yet were enhanced in the loss-of-function of carotenoid cleavage dioxygenase 7 (ccd7) and teosinte branched 1 (brc1) hyper-branched mutants. This indicated that axillary meristem differentiation continued during the cold exposure, which did not directly impact axillary bud formation or shoot branching. We conclude that a prolonged cold exposure to juvenile seedlings prior to inflorescence meristem development extended vegetative growth and delayed the reproductive phase to allow additional leaf primordia and axillary meristems to differentiate that enhanced the number of shoot branches in Arabidopsis.
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Affiliation(s)
- Namraj Dhami
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia
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19
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Chavan SG, Maier C, Alagoz Y, Filipe JC, Warren CR, Lin H, Jia B, Loik ME, Cazzonelli CI, Chen ZH, Ghannoum O, Tissue DT. Light‐limited photosynthesis under energy‐saving film decreases eggplant yield. Food Energy Secur 2020. [DOI: 10.1002/fes3.245] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Affiliation(s)
- Sachin G. Chavan
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
| | - Chelsea Maier
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
| | - Yagiz Alagoz
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
| | - Joao C. Filipe
- Environmental and Conservation Sciences Murdoch University Murdoch WA Australia
| | | | - Han Lin
- Faculty of Science, Engineering and Technology Centre for Translational Atomaterials Swinburne University of Technology Hawthorn Vic. Australia
| | - Baohua Jia
- Faculty of Science, Engineering and Technology Centre for Translational Atomaterials Swinburne University of Technology Hawthorn Vic. Australia
| | - Michael E. Loik
- Department of Environmental Studies University of California Santa Cruz CA USA
| | - Christopher I. Cazzonelli
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
| | - Zhonghua H. Chen
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
| | - Oula Ghannoum
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
| | - David T. Tissue
- National Vegetable Protected Cropping Centre Hawkesbury Institute for the EnvironmentWestern Sydney University Penrith NSW Australia
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20
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Dhami N, Drake JE, Tjoelker MG, Tissue DT, Cazzonelli CI. An extreme heatwave enhanced the xanthophyll de-epoxidation state in leaves of Eucalyptus trees grown in the field. Physiol Mol Biol Plants 2020; 26:211-218. [PMID: 32153324 PMCID: PMC7036375 DOI: 10.1007/s12298-019-00729-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 10/15/2019] [Accepted: 10/29/2019] [Indexed: 06/10/2023]
Abstract
Heatwaves are becoming more frequent with climate warming and can impact tree growth and reproduction. Eucalyptus parramattensis can cope with an extreme heatwave in the field via transpiratory cooling and enhanced leaf thermal tolerance that protected foliar tissues from photo-inhibition and photo-oxidation during natural midday irradiance. Here, we explored whether changes in foliar carotenoids and/or the xanthophyll cycle state can facilitate leaf acclimation to long-term warming and/or an extreme heatwave event. We found that leaves had similar carotenoid levels when grown for one year under ambient and experimental long-term warming (+ 3 °C) conditions in whole tree chambers. Exposure to a 4-day heatwave (> 43 °C) significantly altered the xanthophyll de-epoxidation state of carotenoids revealing one mechanism by which trees could minimise foliar photo-oxidative damage. The levels of zeaxanthin were significantly higher in both young and old leaves during the heatwave, revealing that violaxanthin de-epoxidation and perhaps de novo zeaxanthin synthesis contributed to enhancement of the xanthophyll cycle state. In a future climate of long-term warming and increased heatwave events, leaves of E. parramattensis will be able to utilise biochemical strategies to alter the xanthophyll cycle state and cope with extreme temperatures under natural solar irradiation.
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Affiliation(s)
- Namraj Dhami
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751 Australia
- Present Address: School of Health and Allied Sciences, Pokhara University, Pokhara 30, Gandaki, Nepal
| | - John E. Drake
- Present Address: Forest and Natural Resources Management, SUNY-ESF, 1 Forestry Drive, Syracuse, NY 13210 USA
| | - Mark G. Tjoelker
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751 Australia
| | - David T. Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751 Australia
| | - Christopher I. Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751 Australia
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21
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Cazzonelli CI, Hou X, Alagoz Y, Rivers J, Dhami N, Lee J, Marri S, Pogson BJ. A cis-carotene derived apocarotenoid regulates etioplast and chloroplast development. eLife 2020; 9:45310. [PMID: 32003746 PMCID: PMC6994220 DOI: 10.7554/elife.45310] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 01/07/2020] [Indexed: 12/13/2022] Open
Abstract
Carotenoids are a core plastid component and yet their regulatory function during plastid biogenesis remains enigmatic. A unique carotenoid biosynthesis mutant, carotenoid chloroplast regulation 2 (ccr2), that has no prolamellar body (PLB) and normal PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR) levels, was used to demonstrate a regulatory function for carotenoids and their derivatives under varied dark-light regimes. A forward genetics approach revealed how an epistatic interaction between a ζ-carotene isomerase mutant (ziso-155) and ccr2 blocked the biosynthesis of specific cis-carotenes and restored PLB formation in etioplasts. We attributed this to a novel apocarotenoid retrograde signal, as chemical inhibition of carotenoid cleavage dioxygenase activity restored PLB formation in ccr2 etioplasts during skotomorphogenesis. The apocarotenoid acted in parallel to the repressor of photomorphogenesis, DEETIOLATED1 (DET1), to transcriptionally regulate PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR), PHYTOCHROME INTERACTING FACTOR3 (PIF3) and ELONGATED HYPOCOTYL5 (HY5). The unknown apocarotenoid signal restored POR protein levels and PLB formation in det1, thereby controlling plastid development.
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Affiliation(s)
| | - Xin Hou
- Research School of Biology, The Australian National University, Canberra, Australia
| | - Yagiz Alagoz
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia
| | - John Rivers
- Research School of Biology, The Australian National University, Canberra, Australia
| | - Namraj Dhami
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia
| | - Jiwon Lee
- Centre for Advanced Microscopy, The Australian National University, Canberra, Australia
| | - Shashikanth Marri
- Research School of Biology, The Australian National University, Canberra, Australia
| | - Barry J Pogson
- Research School of Biology, The Australian National University, Canberra, Australia
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22
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Alagoz Y, Dhami N, Mitchell C, Cazzonelli CI. cis/trans Carotenoid Extraction, Purification, Detection, Quantification, and Profiling in Plant Tissues. Methods Mol Biol 2020; 2083:145-163. [PMID: 31745919 DOI: 10.1007/978-1-4939-9952-1_11] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Reverse phase high-performance liquid chromatography (HPLC) is the method of choice used in biological, health, and food research to identify, quantify, and profile carotenoid species. The identification and quantification of cis- and/or trans-carotene and xanthophyll isomers in plant tissues can be affected by the method of sample preparation and extraction, as well as the HPLC column chemistry and the solvent gradient. There is a high degree of heterogeneity in existing methods in terms of their ease, efficiency, and accuracy. We describe a simple carotenoid extraction method and two different optimised HPLC methods utilizing C18 or C30 reverse-phase columns. We outline applications, advantages, and disadvantages for using these reverse phase columns to detect xanthophylls and cis-carotenes in wild-type photosynthetic leaves and mutant dark-grown etiolated seedlings, respectively. Resources are provided to profile individual species based upon their spectral properties and retention time, as well as quantify carotenoids by their composition and absolute levels in different plant tissues.
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Affiliation(s)
- Yagiz Alagoz
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, 2751, NSW, Australia
| | - Namraj Dhami
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, 2751, NSW, Australia
| | - Chris Mitchell
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, 2751, NSW, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, 2751, NSW, Australia.
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23
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Waterman JM, Cazzonelli CI, Hartley SE, Johnson SN. Simulated Herbivory: The Key to Disentangling Plant Defence Responses. Trends Ecol Evol 2019; 34:447-458. [DOI: 10.1016/j.tree.2019.01.008] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Revised: 01/17/2019] [Accepted: 01/21/2019] [Indexed: 12/22/2022]
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Dhami N, Tissue DT, Cazzonelli CI. Leaf-age dependent response of carotenoid accumulation to elevated CO 2 in Arabidopsis. Arch Biochem Biophys 2018; 647:67-75. [PMID: 29604257 DOI: 10.1016/j.abb.2018.03.034] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2017] [Revised: 03/07/2018] [Accepted: 03/26/2018] [Indexed: 01/06/2023]
Abstract
Carotenoids contribute to photosynthesis, photoprotection, phytohormone and apocarotenoid biosynthesis in plants. Carotenoid-derived metabolites control plant growth, development and signalling processes and their accumulation can depend upon changes in the environment. Elevated carbon dioxide (eCO2) often enhances carbon assimilation, early growth patterns and overall plant biomass, and may increase carotenoid accumulation due to higher levels of precursors from isoprenoid biosynthesis. Variable effects of eCO2 on carotenoid accumulation in leaves have been observed for different plant species. Here, we determined whether the variable response of carotenoids to eCO2 was potentially a function of leaf age and the impact of eCO2 on leaf development by growing Arabidopsis in ambient CO2 (400 ppm) and eCO2 (800 ppm). eCO2 increased plant leaf number, rosette area, biomass, seed yield and net photosynthesis. In addition, eCO2 increased carotenoid content by 10-20% in younger emerging leaves, but not in older mature leaves. Older leaves contained approximately 60% less total carotenoids compared to younger leaves. The age-dependent effect on carotenoid content was observed for cotyledon, juvenile and adult phase leaves. We conclude that younger leaves utilize additional carbon from enhanced photosynthesis in eCO2 to increase carotenoid content, yet older leaves have less capacity to store additional carbon into carotenoids.
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Affiliation(s)
- Namraj Dhami
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - David T Tissue
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia
| | - Christopher I Cazzonelli
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, 2753, Australia.
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25
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Pornsiriwong W, Estavillo GM, Chan KX, Tee EE, Ganguly D, Crisp PA, Phua SY, Zhao C, Qiu J, Park J, Yong MT, Nisar N, Yadav AK, Schwessinger B, Rathjen J, Cazzonelli CI, Wilson PB, Gilliham M, Chen ZH, Pogson BJ. A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination. eLife 2017; 6. [PMID: 28323614 PMCID: PMC5406205 DOI: 10.7554/elife.23361] [Citation(s) in RCA: 94] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Accepted: 03/16/2017] [Indexed: 02/06/2023] Open
Abstract
Organelle-nuclear retrograde signaling regulates gene expression, but its roles in specialized cells and integration with hormonal signaling remain enigmatic. Here we show that the SAL1-PAP (3'-phosphoadenosine 5'- phosphate) retrograde pathway interacts with abscisic acid (ABA) signaling to regulate stomatal closure and seed germination in Arabidopsis. Genetically or exogenously manipulating PAP bypasses the canonical signaling components ABA Insensitive 1 (ABI1) and Open Stomata 1 (OST1); priming an alternative pathway that restores ABA-responsive gene expression, ROS bursts, ion channel function, stomatal closure and drought tolerance in ost1-2. PAP also inhibits wild type and abi1-1 seed germination by enhancing ABA sensitivity. PAP-XRN signaling interacts with ABA, ROS and Ca2+; up-regulating multiple ABA signaling components, including lowly-expressed Calcium Dependent Protein Kinases (CDPKs) capable of activating the anion channel SLAC1. Thus, PAP exhibits many secondary messenger attributes and exemplifies how retrograde signals can have broader roles in hormone signaling, allowing chloroplasts to fine-tune physiological responses.
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Affiliation(s)
- Wannarat Pornsiriwong
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia.,Department of Biochemistry, Faculty of Science, Kasetsart University, Bangkok, Thailand
| | - Gonzalo M Estavillo
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia.,CSIRO Agriculture and Food, Acton, Australia
| | - Kai Xun Chan
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Estee E Tee
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Diep Ganguly
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Peter A Crisp
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Su Yin Phua
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Chenchen Zhao
- School of Science and Health, Western Sydney University, Richmond, Australia
| | - Jiaen Qiu
- ARC Centre of Excellence in Plant Energy Biology, Department of Plant Science, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, Australia.,Waite Research Institute, University of Adelaide, Glen Osmond, Australia
| | - Jiyoung Park
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, San Diego, United States
| | - Miing Tiem Yong
- School of Science and Health, Western Sydney University, Richmond, Australia
| | - Nazia Nisar
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Arun Kumar Yadav
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | | | - John Rathjen
- Research School of Biology, The Australian National University, Acton, Australia
| | - Christopher I Cazzonelli
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia.,Hawkesbury Institute for the Environment, Western Sydney University, Richmond, Australia
| | - Philippa B Wilson
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
| | - Matthew Gilliham
- ARC Centre of Excellence in Plant Energy Biology, Department of Plant Science, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, Australia
| | - Zhong-Hua Chen
- School of Science and Health, Western Sydney University, Richmond, Australia.,College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Barry J Pogson
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Acton, Australia
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26
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Van Norman JM, Zhang J, Cazzonelli CI, Pogson BJ, Harrison PJ, Bugg TDH, Chan KX, Thompson AJ, Benfey PN. Periodic root branching in Arabidopsis requires synthesis of an uncharacterized carotenoid derivative. Proc Natl Acad Sci U S A 2014; 111:E1300-9. [PMID: 24639533 PMCID: PMC3977299 DOI: 10.1073/pnas.1403016111] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
In plants, continuous formation of lateral roots (LRs) facilitates efficient exploration of the soil environment. Roots can maximize developmental capacity in variable environmental conditions through establishment of sites competent to form LRs. This LR prepattern is established by a periodic oscillation in gene expression near the root tip. The spatial distribution of competent (prebranch) sites results from the interplay between this periodic process and primary root growth; yet, much about this oscillatory process and the formation of prebranch sites remains unknown. We find that disruption of carotenoid biosynthesis results in seedlings with very few LRs. Carotenoids are further required for the output of the LR clock because inhibition of carotenoid synthesis also results in fewer sites competent to form LRs. Genetic analyses and a carotenoid cleavage inhibitor indicate that an apocarotenoid, distinct from abscisic acid or strigolactone, is specifically required for LR formation. Expression of a key carotenoid biosynthesis gene occurs in a spatially specific pattern along the root's axis, suggesting spatial regulation of carotenoid synthesis. These results indicate that developmental prepatterning of LRs requires an uncharacterized carotenoid-derived molecule. We propose that this molecule functions non-cell-autonomously in establishment of the LR prepattern.
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Affiliation(s)
| | - Jingyuan Zhang
- Department of Biology, Duke Center for Systems Biology and
| | - Christopher I. Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Barry J. Pogson
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Peter J. Harrison
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom; and
| | - Timothy D. H. Bugg
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom; and
| | - Kai Xun Chan
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Andrew J. Thompson
- Cranfield Soil and Agri-Food Institute, Cranfield University, Cranfield, Bedfordshire MK43 0AL, United Kingdom
| | - Philip N. Benfey
- Department of Biology, Duke Center for Systems Biology and
- Howard Hughes Medical Institute, Duke University, Durham, NC 27708
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Nisar N, Cuttriss AJ, Pogson BJ, Cazzonelli CI. The promoter of the Arabidopsis PIN6 auxin transporter enabled strong expression in the vasculature of roots, leaves, floral stems and reproductive organs. Plant Signal Behav 2014; 9:e27898. [PMID: 24487186 PMCID: PMC4091377 DOI: 10.4161/psb.27898] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Cellular auxin homeostasis controls many aspects of plant growth, organogenesis and development. The existence of intracellular auxin transport mediated by endoplasmic reticulum (ER)-localized PIN5, PIN6 and PIN8 proteins is a relatively recent discovery shaping a new era in understanding auxin-mediated growth processes. Here we summarize the importance of PIN6 in mediating intracellular auxin transport during root formation, leaf vein patterning and nectary production. While, it was previously shown that PIN6 was strongly expressed in rosette leaf cell types important in vein formation, here we demonstrate by use a PIN6 promoter-reporter fusion, that PIN6 is also preferentially expressed in the vasculature of the primary root, cotyledons, cauline leaves, floral stem, sepals and the main transmitting tract of the reproductive silique. The strong, vein- specific reporter gene expression patterns enabled by the PIN6 promoter emphasizes that transcriptional control is likely to be a major regulator of PIN6 protein levels, during vasculature formation, and supports the need for ER-localized PIN proteins in selecting specialized cells for vascular function in land plants.
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28
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Cazzonelli CI, Nisar N, Roberts AC, Murray KD, Borevitz JO, Pogson BJ. A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation. Front Plant Sci 2014; 5:533. [PMID: 25374573 PMCID: PMC4204441 DOI: 10.3389/fpls.2014.00533] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Accepted: 09/19/2014] [Indexed: 05/20/2023]
Abstract
Thigmomorphogenesis is viewed as being a response process of acclimation to short repetitive bursts of mechanical stimulation or touch. The underlying molecular mechanisms that coordinate changes in how touch signals lead to long-term morphological changes are enigmatic. Touch responsive gene expression is rapid and transient, and no transcription factor or DNA regulatory motif has been reported that could confer a genome wide mechanical stimulus. We report here on a chromatin modifying enzyme, SDG8/ASHH2, which can regulate the expression of many touch responsive genes identified in Arabidopsis. SDG8 is required for the permissive expression of touch induced genes; and the loss of function of sdg8 perturbs the maximum levels of induction on selected touch gene targets. SDG8 is required to maintain permissive H3K4 trimethylation marks surrounding the Arabidopsis touch-inducible gene TOUCH 3 (TCH3), which encodes a calmodulin-like protein (CML12). The gene neighboring was also slightly down regulated, revealing a new target for SDG8 mediated chromatin modification. Finally, sdg8 mutants show perturbed morphological response to wind-agitated mechanical stimuli, implicating an epigenetic memory-forming process in the acclimation response of thigmomorphogenesis.
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Affiliation(s)
- Christopher I. Cazzonelli
- Hawkesbury Institute for the Environment, University of Western SydneyPenrith, NSW, Australia
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, College of Medicine, Biology and Environment, The Australian National UniversityCanberra, ACT, Australia
- *Correspondence: Christopher I. Cazzonelli, Environmental Epigenetics Laboratory, Hawkesbury Institute for the Environment, University of Western Sydney, Hawkesbury Campus, Bourke Street, Richmond, NSW 2753, Australia e-mail:
| | - Nazia Nisar
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, College of Medicine, Biology and Environment, The Australian National UniversityCanberra, ACT, Australia
| | - Andrea C. Roberts
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, College of Medicine, Biology and Environment, The Australian National UniversityCanberra, ACT, Australia
| | - Kevin D. Murray
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, College of Medicine, Biology and Environment, The Australian National UniversityCanberra, ACT, Australia
| | - Justin O. Borevitz
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, College of Medicine, Biology and Environment, The Australian National UniversityCanberra, ACT, Australia
| | - Barry J. Pogson
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, College of Medicine, Biology and Environment, The Australian National UniversityCanberra, ACT, Australia
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29
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Cazzonelli CI, Vanstraelen M, Simon S, Yin K, Carron-Arthur A, Nisar N, Tarle G, Cuttriss AJ, Searle IR, Benkova E, Mathesius U, Masle J, Friml J, Pogson BJ. Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development. PLoS One 2013; 8:e70069. [PMID: 23922907 PMCID: PMC3726503 DOI: 10.1371/journal.pone.0070069] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Accepted: 06/15/2013] [Indexed: 01/11/2023] Open
Abstract
Plant-specific PIN-formed (PIN) efflux transporters for the plant hormone auxin are required for tissue-specific directional auxin transport and cellular auxin homeostasis. The Arabidopsis PIN protein family has been shown to play important roles in developmental processes such as embryogenesis, organogenesis, vascular tissue differentiation, root meristem patterning and tropic growth. Here we analyzed roles of the less characterised Arabidopsis PIN6 auxin transporter. PIN6 is auxin-inducible and is expressed during multiple auxin-regulated developmental processes. Loss of pin6 function interfered with primary root growth and lateral root development. Misexpression of PIN6 affected auxin transport and interfered with auxin homeostasis in other growth processes such as shoot apical dominance, lateral root primordia development, adventitious root formation, root hair outgrowth and root waving. These changes in auxin-regulated growth correlated with a reduction in total auxin transport as well as with an altered activity of DR5-GUS auxin response reporter. Overall, the data indicate that PIN6 regulates auxin homeostasis during plant development.
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Affiliation(s)
- Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, College of Medicine, Biology and Environment, Research School of Biology, The Australian National University, Canberra, Australia.
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30
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Nisar N, Verma S, Pogson BJ, Cazzonelli CI. Inflorescence stem grafting made easy in Arabidopsis. Plant Methods 2012; 8:50. [PMID: 23249585 PMCID: PMC3567951 DOI: 10.1186/1746-4811-8-50] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2012] [Accepted: 12/17/2012] [Indexed: 05/20/2023]
Abstract
BACKGROUND Plant grafting techniques have deepened our understanding of the signals facilitating communication between the root and shoot, as well as between shoot and reproductive organs. Transmissible signalling molecules can include hormones, peptides, proteins and metabolites: some of which travel long distances to communicate stress, nutrient status, disease and developmental events. While hypocotyl micrografting techniques have been successfully established for Arabidopsis to explore root to shoot communications, inflorescence grafting in Arabidopsis has not been exploited to the same extent. Two different strategies (horizontal and wedge-style inflorescence grafting) have been developed to explore long distance signalling between the shoot and reproductive organs. We developed a robust wedge-cleft grafting method, with success rates greater than 87%, by developing better tissue contact between the stems from the inflorescence scion and rootstock. We describe how to perform a successful inflorescence stem graft that allows for reproducible translocation experiments into the physiological, developmental and molecular aspects of long distance signalling events that promote reproduction. RESULTS Wedge grafts of the Arabidopsis inflorescence stem were supported with silicone tubing and further sealed with parafilm to maintain the vascular flow of nutrients to the shoot and reproductive tissues. Nearly all (87%) grafted plants formed a strong union between the scion and rootstock. The success of grafting was scored using an inflorescence growth assay based upon the growth of primary stem. Repeated pruning produced new cauline tissues, healthy flowers and reproductive siliques, which indicates a healthy flow of nutrients from the rootstock. Removal of the silicone tubing showed a tightly fused wedge graft junction with callus proliferation. Histological staining of sections through the graft junction demonstrated the differentiation of newly formed vascular connections, parenchyma tissue and lignin accumulation, supporting the presumed success of the graft union between two sections of the primary inflorescence stem. CONCLUSIONS We describe a simple and reliable method for grafting sections of an Arabidopsis inflorescence stem. This step-by-step protocol facilitates laboratories without grafting experience to further explore the molecular and chemical signalling which coordinates communications between the shoot and reproductive tissues.
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Affiliation(s)
- Nazia Nisar
- Australian Research Council Centre of Excellence in Plant Energy Biology, College of Medicine, Biology and Environment, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Shelley Verma
- Australian Research Council Centre of Excellence in Plant Energy Biology, College of Medicine, Biology and Environment, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Barry J Pogson
- Australian Research Council Centre of Excellence in Plant Energy Biology, College of Medicine, Biology and Environment, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, College of Medicine, Biology and Environment, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
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31
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Velten J, Cakir C, Youn E, Chen J, Cazzonelli CI. Transgene silencing and transgene-derived siRNA production in tobacco plants homozygous for an introduced AtMYB90 construct. PLoS One 2012; 7:e30141. [PMID: 22363419 PMCID: PMC3281821 DOI: 10.1371/journal.pone.0030141] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2011] [Accepted: 12/10/2011] [Indexed: 12/15/2022] Open
Abstract
Transgenic tobacco (Nicotiana tabacum) lines were engineered to ectopically over-express AtMYB90 (PAP2), an R2-R3 Myb gene associated with regulation of anthocyanin production in Arabidopsis thaliana. Independently transformed transgenic lines, Myb27 and Myb237, accumulated large quantities of anthocyanin, generating a dark purple phenotype in nearly all tissues. After self-fertilization, some progeny of the Myb27 line displayed an unexpected pigmentation pattern, with most leaves displaying large sectors of dramatically reduced anthocyanin production. The green-sectored 27Hmo plants were all found to be homozygous for the transgene and, despite a doubled transgene dosage, to have reduced levels of AtMYB90 mRNA. The observed reduction in anthocyanin pigmentation and AtMYB90 mRNA was phenotypically identical to the patterns seen in leaves systemically silenced for the AtMYB90 transgene, and was associated with the presence of AtMYB90-derived siRNA homologous to both strands of a portion of the AtMYB90 transcribed region. Activation of transgene silencing in the Myb27 line was triggered when the 35S::AtMYB90 transgene dosage was doubled, in both Myb27 homozygotes, and in plants containing one copy of each of the independently segregating Myb27 and Myb237 transgene loci. Mapping of sequenced siRNA molecules to the Myb27 TDNA (including flanking tobacco sequences) indicated that the 3' half of the AtMYB90 transcript is the primary target for siRNA associated silencing in both homozygous Myb27 plants and in systemically silenced tissues. The transgene within the Myb27 line was found to consist of a single, fully intact, copy of the AtMYB90 construct. Silencing appears to initiate in response to elevated levels of transgene mRNA (or an aberrant product thereof) present within a subset of leaf cells, followed by spread of the resulting small RNA to adjacent leaf tissues and subsequent amplification of siRNA production.
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MESH Headings
- Anthocyanins/metabolism
- Arabidopsis/genetics
- Arabidopsis/metabolism
- Arabidopsis Proteins/genetics
- Arabidopsis Proteins/metabolism
- Base Sequence
- DNA, Bacterial/genetics
- DNA, Plant/genetics
- Gene Expression Regulation, Plant
- Gene Silencing
- Genetic Loci/genetics
- Genome, Plant/genetics
- Hemizygote
- Homozygote
- MicroRNAs/genetics
- MicroRNAs/metabolism
- Molecular Sequence Data
- Mutagenesis, Insertional/genetics
- Phenotype
- Pigmentation/genetics
- Plants, Genetically Modified
- RNA, Messenger/genetics
- RNA, Messenger/metabolism
- RNA, Small Interfering/metabolism
- Nicotiana/genetics
- Transcription Factors/genetics
- Transcription Factors/metabolism
- Transcription, Genetic
- Transgenes/genetics
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Affiliation(s)
- Jeff Velten
- United States Department of Agriculture-Agricultural Research Service, Lubbock, Texas, United States of America.
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Cazzonelli CI. Carotenoids in nature: insights from plants and beyond. Funct Plant Biol 2011; 38:833-847. [PMID: 32480941 DOI: 10.1071/fp11192] [Citation(s) in RCA: 229] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Accepted: 08/30/2011] [Indexed: 05/22/2023]
Abstract
Carotenoids are natural isoprenoid pigments that provide leaves, fruits, vegetables and flowers with distinctive yellow, orange and some reddish colours as well as several aromas in plants. Their bright colours serve as attractants for pollination and seed dispersal. Carotenoids comprise a large family of C40 polyenes and are synthesised by all photosynthetic organisms, aphids, some bacteria and fungi alike. In animals carotenoid derivatives promote health, improve sexual behaviour and are essential for reproduction. As such, carotenoids are commercially important in agriculture, food, health and the cosmetic industries. In plants, carotenoids are essential components required for photosynthesis, photoprotection and the production of carotenoid-derived phytohormones, including ABA and strigolactone. The carotenoid biosynthetic pathway has been extensively studied in a range of organisms providing an almost complete pathway for carotenogenesis. A new wave in carotenoid biology has revealed implications for epigenetic and metabolic feedback control of carotenogenesis. Developmental and environmental signals can regulate carotenoid gene expression thereby affecting carotenoid accumulation. This review highlights mechanisms controlling (1) the first committed step in phytoene biosynthesis, (2) flux through the branch to synthesis of α- and β-carotenes and (3) metabolic feedback signalling within and between the carotenoid, MEP and ABA pathways.
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Affiliation(s)
- Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, College of Medicine, Biology and Environment, Research School of Biology, The Australian National University, Building 134, Linnaeus Way, Canberra, ACT 0200, Australia. Email
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Cazzonelli CI, Pogson BJ. Source to sink: regulation of carotenoid biosynthesis in plants. Trends Plant Sci 2010; 15:266-74. [PMID: 20303820 DOI: 10.1016/j.tplants.2010.02.003] [Citation(s) in RCA: 468] [Impact Index Per Article: 33.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2009] [Revised: 02/04/2010] [Accepted: 02/17/2010] [Indexed: 05/18/2023]
Abstract
Carotenoids are a diverse group of colourful pigments naturally found in plants, algae, fungi and bacteria. They play essential roles in development, photosynthesis, root-mycorrhizal interactions and the production of phytohormones, such as abscisic acid and strigolactone. Carotenoid biosynthesis is regulated throughout the life cycle of a plant with dynamic changes in composition matched to prevailing developmental requirements and in response to external environmental stimuli. There are key regulatory nodes in the pathway that control the flux of metabolites into the pathway and alter flux through the pathway. The molecular nature of the mechanisms regulating carotenoid biosynthesis, including evidence for metabolite feedback, transcription and epigenetic control as well as their accumulation, storage and degradation will be the focus of this review.
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Affiliation(s)
- Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
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Velten J, Cakir C, Cazzonelli CI. A spontaneous dominant-negative mutation within a 35S::AtMYB90 transgene inhibits flower pigment production in tobacco. PLoS One 2010; 5:e9917. [PMID: 20360951 PMCID: PMC2847903 DOI: 10.1371/journal.pone.0009917] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2009] [Accepted: 02/26/2010] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND In part due to the ease of visual detection of phenotypic changes, anthocyanin pigment production has long been the target of genetic and molecular research in plants. Specific members of the large family of plant myb transcription factors have been found to play critical roles in regulating expression of anthocyanin biosynthetic genes and these genes continue to serve as important tools in dissecting the molecular mechanisms of plant gene regulation. FINDINGS A spontaneous mutation within the coding region of an Arabidopsis 35S::AtMYB90 transgene converted the activator of plant-wide anthocyanin production to a dominant-negative allele (PG-1) that inhibits normal pigment production within tobacco petals. Sequence analysis identified a single base change that created a premature nonsense codon, truncating the encoded myb protein. The resulting mutant protein lacks 78 amino acids from the wild type C-terminus and was confirmed as the source of the white-flower phenotype. A putative tobacco homolog of AtMYB90 (NtAN2) was isolated and found to be expressed in flower petals but not leaves of all tobacco plants tested. Using transgenic tobacco constitutively expressing the NtAN2 gene confirmed the NtAN2 protein as the likely target of PG-1-based inhibition of tobacco pigment production. CONCLUSIONS Messenger RNA and anthocyanin analysis of PG-1Sh transgenic lines (and PG-1Sh x purple 35S::NtAN2 seedlings) support a model in which the mutant myb transgene product acts as a competitive inhibitor of the native tobacco NtAN2 protein. This finding is important to researchers in the field of plant transcription factor analysis, representing a potential outcome for experiments analyzing in vivo protein function in test transgenic systems that over-express or mutate plant transcription factors.
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Affiliation(s)
- Jeff Velten
- Plant Stress and Water Conservation Laboratory, United States Department of Agriculture - Agricultural Research Service, Lubbock, Texas, United States of America.
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Cazzonelli CI, Roberts AC, Carmody ME, Pogson BJ. Transcriptional control of SET DOMAIN GROUP 8 and CAROTENOID ISOMERASE during Arabidopsis development. Mol Plant 2010; 3:174-91. [PMID: 19952001 DOI: 10.1093/mp/ssp092] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Carotenoids are pigments required for photosynthesis, photoprotection and the production of carotenoid-derived hormones such as ABA and strigolactones. The carotenoid biosynthetic pathway bifurcates after lycopene to produce epsilon- and beta-carotenoids and this branch is critical for determining carotenoid composition. Here, we show how the branch point can be regulated by the chromatin-modifying histone methyltransferase, Set Domain Group 8 (SDG8) targeting the carotenoid isomerase (CRTISO). SDG8 is required to maintain permissive expression of CRTISO during seedling development, in leaves, shoot apex, and some floral organs. The CRTISO and SDG8 promoters show overlapping tissue-specific patterns of reporter gene activity. Interestingly, CRTISO showed atypical reporter gene expression in terms of greater variability between different lines compared to the Cauliflower Mosaic Virus 35S promoter (CaMV35s) and epsilonLCY promoters, potentially due to chromosomal position effects. Regulation of the CRTISO promoter was dependent in part upon the presence or absence of SDG8. Knockouts of SDG8 (carotenoid and chloroplast regulation (ccr1)) and CRTISO (ccr2) result in altered carotenoid composition and this could be restored in ccr2 using the CaMV35s or CRTISO promoters. In contrast, varying degrees of GUS expression and carotenoid complementation by CRTISO overexpression using CaMV35S or CRTISO promoters in the ccr1 background demonstrated that both the CRTISO promoter and open reading frame are necessary for SDG8-mediated expression of CRTISO.
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Affiliation(s)
- Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, Australia
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Wever W, McCallum EJ, Chakravorty D, Cazzonelli CI, Botella JR. The 5' untranslated region of the VR-ACS1 mRNA acts as a strong translational enhancer in plants. Transgenic Res 2009; 19:667-74. [PMID: 19816782 DOI: 10.1007/s11248-009-9332-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2009] [Accepted: 09/25/2009] [Indexed: 12/11/2022]
Abstract
The structure and function of untranslated mRNA leader sequences and their role in controlling gene expression remains poorly understood. Previous research has suggested that the 5' untranslated region (5'UTR) of the Vigna radiata aminocyclopropane-1-carboxylate synthase synthase (VR-ACS1) gene may function as a translational enhancer in plants. To test such hypothesis we compared the translation enhancing properties of three different 5'UTRs; those from the VR-ACS1, the chlorophyll a/b binding gene from petunia (Cab22L; a known translational enhancer) and the Vigna radiata pectinacetylesterase gene (PAE; used as control). Identical constructs in which the coding region of the beta-glucuronidase (GUS) gene was fused to each of the three 5'UTRs and placed under the control of the cauliflower mosaic virus 35S promoter were prepared. Transient expression assays in tobacco cell cultures and mung bean leaves showed that the VR-ACS1 and Cab22L 5'UTRs directed higher levels of GUS activity than the PAE 5'UTR. Analysis of transgenic Arabidopsis thaliana seedlings, as well as different tissues from mature plants, confirmed that while transcript levels were equivalent for all constructs, the 5'UTRs from the VR-ACS1 and Cab22L genes can increase GUS activity twofold to fivefold compared to the PAE 5'UTR, therefore confirming the translational enhancing properties of the VR-ACS1 5'UTR.
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Affiliation(s)
- Willem Wever
- Plant Genetic Engineering Laboratory, School of Biological Sciences, University of Queensland, Brisbane, Queensland, 4072, Australia
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Cazzonelli CI, Millar T, Finnegan EJ, Pogson BJ. Promoting gene expression in plants by permissive histone lysine methylation. Plant Signal Behav 2009; 4:484-8. [PMID: 19816124 PMCID: PMC2688292 DOI: 10.4161/psb.4.6.8316] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2009] [Accepted: 03/02/2009] [Indexed: 05/23/2023]
Abstract
Plants utilize sophisticated epigenetic regulatory mechanisms to coordinate changes in gene expression during development and in response to environmental stimuli. Epigenetics refers to the modification of DNA and chromatin associated proteins, which affect gene expression and cell function, without changing the DNA sequence. Such modifications are inherited through mitosis, and in rare instances through meiosis, although it can be reversible and thus regulatory. Epigenetic modifications are controlled by groups of proteins, such as the family of histone lysine methytransferases (HKMTs). The catalytic core known as the SET domain encodes HKMT activity and either promotes or represses gene expression. A large family of SET domain proteins is present in Arabidopsis where there is growing evidence that two classes of these genes are involved in promoting gene expression in a diverse range of developmental processes. This review will focus on the function of these two classes and the processes that they control, highlighting the huge potential this regulatory mechanism has in plants.
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Affiliation(s)
- Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biochemistry and Molecular Biology, The Australian National University, Canberra, Australia.
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Cazzonelli CI, Cuttriss AJ, Cossetto SB, Pye W, Crisp P, Whelan J, Finnegan EJ, Turnbull C, Pogson BJ. Regulation of carotenoid composition and shoot branching in Arabidopsis by a chromatin modifying histone methyltransferase, SDG8. Plant Cell 2009; 21:39-53. [PMID: 19174535 PMCID: PMC2648095 DOI: 10.1105/tpc.108.063131] [Citation(s) in RCA: 153] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2008] [Revised: 12/02/2008] [Accepted: 01/14/2009] [Indexed: 05/18/2023]
Abstract
Carotenoid pigments are critical for plant survival, and carotenoid composition is tuned to the developmental stage, tissue, and to environmental stimuli. We report the cloning of the CAROTENOID CHLOROPLAST REGULATORY1 (CCR1) gene. The ccr1 mutant has increased shoot branching and altered carotenoid composition, namely, reduced lutein in leaves and accumulation of cis-carotenes in dark-grown seedlings. The CCR1 gene was previously isolated as EARLY FLOWERING IN SHORT DAYS and encodes a histone methyltransferase (SET DOMAIN GROUP 8) that methylates histone H3 on Lys 4 and/or 36 (H3K4 and H3K36). ccr1 plants show reduced trimethyl-H3K4 and increased dimethyl-H3K4 surrounding the CAROTENOID ISOMERASE (CRTISO) translation start site, which correlates with low levels of CRTISO mRNA. Microarrays of ccr1 revealed the downregulation of 85 genes, including CRTISO and genes associated with signaling and development, and upregulation of just 28 genes. The reduction in CRTISO transcript abundance explains the altered carotenoid profile. The changes in shoot branching are additive with more axillary branching mutants, but the altered carotenoid profile may partially affect shoot branching, potentially by perturbed biosynthesis of the carotenoid substrates of strigolactones. These results are consistent with SDG8 regulating shoot meristem activity and carotenoid biosynthesis by modifying the chromatin surrounding key genes, including CRTISO. Thus, the level of lutein, the most abundant carotenoid in higher plants that is critical for photosynthesis and photoprotection, appears to be regulated by a chromatin modifying enzyme in Arabidopsis thaliana.
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Affiliation(s)
- Christopher I Cazzonelli
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Biochemistry and Molecular Biology, Australian National University, Canberra, ACT 0200, Australia
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Cazzonelli CI, McCallum EJ, Lee R, Botella JR. Characterization of a strong, constitutive mung bean (Vigna radiata L.) promoter with a complex mode of regulation in planta. Transgenic Res 2005; 14:941-67. [PMID: 16315097 DOI: 10.1007/s11248-005-2539-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2005] [Accepted: 08/25/2005] [Indexed: 10/25/2022]
Abstract
We report the cloning and characterization in tobacco and Arabidopsis of a Vigna radiata L. (mung bean) promoter that controls the expression of VR-ACS1, an auxin-inducible ACC synthase gene. The VR-ACS1 promoter exhibits a very unusual behavior when studied in plants different from its original host, mung bean. GUS and luciferase in situ assays of transgenic plants containing VR-ACS1 promoter fusions show strong constitutive reporter gene expression throughout tobacco and Arabidopsis development. In vitro quantitative analyses show that transgenic plants harboring VR-ACS1 promoter-reporter constructs have on average 4-6 fold higher protein and activity levels of both reporter genes than plants transformed with comparable CaMV 35S promoter fusions. Similar transcript levels are present in VR-ACS1 and CaMV 35S promoter lines, suggesting that the high levels of gene product observed for the VR-ACS1 promoter are the combined result of transcriptional and translational activation. All tested deletion constructs retaining the core promoter region can drive strong constitutive promoter activity in transgenic plants. This is in contrast to mung bean, where expression of the native VR-ACS1 gene is almost undetectable in plants grown under normal conditions, but is rapidly and highly induced by a variety of stimuli. The constitutive behavior of the VR-ACS1 promoter in heterologous hosts is surprising, suggesting that the control mechanisms active in mung bean are impaired in tobacco and Arabidopsis. The 'aberrant' behavior of the VR-ACS1 promoter is further emphasized by its failure to respond to auxin and cycloheximide in heterologous hosts. VR-ACS1 promoter regulatory mechanisms seem to be different from all previously characterized auxin-inducible promoters.
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Affiliation(s)
- Christopher I Cazzonelli
- Department of Botany, Plant Genetic Engineering Laboratory, University of Queensland, Brisbane, Australia
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Abstract
BACKGROUND The geminivirus and nanovirus families of DNA plant viruses have proved to be a fertile source of viral genomic sequences, clearly demonstrated by the large number of sequence entries within public DNA sequence databases. Due to considerable conservation in genome organization, these viruses contain easily identifiable intergenic regions that have been found to contain multiple DNA sequence elements important to viral replication and gene regulation. As a first step in a broad screen of geminivirus and nanovirus intergenic sequences for DNA segments important in controlling viral gene expression, we have 'mined' a large set of viral intergenic regions for transcriptional enhancers. Viral sequences that are found to act as enhancers of transcription in plants are likely to contribute to viral gene activity during infection. RESULTS DNA sequences from the intergenic regions of 29 geminiviruses or nanoviruses were scanned for repeated sequence elements to be tested for transcription enhancing activity. 105 elements were identified and placed immediately upstream from a minimal plant-functional promoter fused to an intron-containing luciferase reporter gene. Transient luciferase activity was measured within Agrobacteria-infused Nicotiana tobacum leaf tissue. Of the 105 elements tested, 14 were found to reproducibly elevate reporter gene activity (>25% increase over that from the minimal promoter-reporter construct, p < 0.05), while 91 elements failed to increase luciferase activity. A previously described "conserved late element" (CLE) was identified within tested repeats from 5 different viral species was found to have intrinsic enhancer activity in the absence of viral gene products. The remaining 9 active elements have not been previously demonstrated to act as functional promoter components. CONCLUSION Biological significance for the active DNA elements identified is supported by repeated isolation of a previously defined viral element (CLE), and the finding that two of three viral enhancer elements examined were markedly enriched within both geminivirus sequences and within Arabidopsis promoter regions. These data provide a useful starting point for virologists interested in undertaking more detailed analysis of geminiviral promoter function.
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Affiliation(s)
- Jeff Velten
- USDA-ARS, Plant Stress and Water Conservation Laboratory, 3810 4th St., Lubbock, TX 79415, USA
| | - Kevin J Morey
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
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