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Soni N, Hegde N, Dhariwal A, Kushalappa AC. Role of laccase gene in wheat NILs differing at QTL-Fhb1 for resistance against Fusarium head blight. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 298:110574. [PMID: 32771175 DOI: 10.1016/j.plantsci.2020.110574] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Revised: 06/16/2020] [Accepted: 06/19/2020] [Indexed: 05/20/2023]
Abstract
Fusarium head blight (FHB), caused mainly by Fusarium graminearum (Fg), is one of the most severe diseases of wheat. It affects grain yield and quality due to mycotoxin contamination, which is harmful for both human and livestock consumption. Cell wall lignification, following pathogen invasion, is one of the innate defense responses. Plant laccases are known to lignify the secondary cell walls. A metabolo-genomics study identified laccase as one of the candidate genes in QTL-Fhb1 of wheat NILs derived from Sumai 3*5/Thatcher cross. Based on phylogenetics, it was named as TaLAC4. Real-time qPCR revealed a strongly induced expression of TaLAC4 in NIL-R. The VIGS based transient silencing of TaLAC4 in NIL-R resulted in an increased susceptibility leading to Fg spread within the entire spike in 15dpi, contrasting to non-silenced where the infection was limited to inoculated spikelets. Histopathology revealed thickened cell walls, mainly due to G-lignin, in non-silenced NIL-R, relative to silenced, in conjunction with higher total lignin content. Metabolic profiling of TaLAC4 silenced NILs identified the accumulation of several precursor metabolites higher in abundances upstream TaLAC4. These results confirm that the resistance function of TaLAC4 in NIL-R is due to pathogen-induced lignification of secondary cell walls in the rachis.
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Affiliation(s)
- Nancy Soni
- Plant Science Department, McGill University, Ste.-Anne-de-Bellevue, QC, Canada
| | - Niranjan Hegde
- Plant Science Department, McGill University, Ste.-Anne-de-Bellevue, QC, Canada
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Massana-Codina J, Schnee S, Allard PM, Rutz A, Boccard J, Michellod E, Cléroux M, Schürch S, Gindro K, Wolfender JL. Insights on the Structural and Metabolic Resistance of Potato ( Solanum tuberosum) Cultivars to Tuber Black Dot ( Colletotrichum coccodes). FRONTIERS IN PLANT SCIENCE 2020; 11:1287. [PMID: 32973846 PMCID: PMC7468465 DOI: 10.3389/fpls.2020.01287] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Accepted: 08/07/2020] [Indexed: 05/03/2023]
Abstract
Black dot is a blemish disease of potato tubers caused by the phytopathogenic fungus Colletotrichum coccodes. Qualitative resistance (monogenic) that leads to the hypersensitive response has not been reported against black dot, but commercial potato cultivars show different susceptibility levels to the disease, indicating that quantitative resistance (polygenic) mechanisms against this pathogen exist. Cytological studies are essential to decipher pathogen colonization of the plant tissue, and untargeted metabolomics has been shown effective in highlighting resistance-related metabolites in quantitative resistance. In this study, we used five commercial potato cultivars with different susceptibility levels to black dot, and studied the structural and biochemical aspects that correlate with resistance to black dot using cytological and untargeted metabolomics methods. The cytological approach using semithin sections of potato tuber periderm revealed that C. coccodes colonizes the tuber periderm, but does not penetrate in cortical cells. Furthermore, skin thickness did not correlate with disease susceptibility, indicating that other factors influence quantitative resistance to black dot. Furthermore, suberin amounts did not correlate with black dot severity, and suberin composition was similar between the five potato cultivars studied. On the other hand, the untargeted metabolomics approach allowed highlighting biomarkers of infection, as well as constitutive and induced resistance-related metabolites. Hydroxycinnamic acids, hydroxycinnamic acid amides and steroidal saponins were found to be biomarkers of resistance under control conditions, while hydroxycoumarins were found to be specifically induced in the resistant cultivars. Notably, some of these biomarkers showed antifungal activity in vitro against C. coccodes. Altogether, our results show that quantitative resistance of potatoes to black dot involves structural and biochemical mechanisms, including the production of specialized metabolites with antifungal properties.
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Affiliation(s)
- Josep Massana-Codina
- Plant Protection Research Division, Agroscope, Nyon, Switzerland
- School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland
- Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Geneva, Switzerland
| | - Sylvain Schnee
- Plant Protection Research Division, Agroscope, Nyon, Switzerland
| | - Pierre-Marie Allard
- School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland
- Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Geneva, Switzerland
| | - Adriano Rutz
- School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland
- Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Geneva, Switzerland
| | - Julien Boccard
- School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland
- Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Geneva, Switzerland
| | - Emilie Michellod
- Plant Protection Research Division, Agroscope, Nyon, Switzerland
| | - Marilyn Cléroux
- Changins College for Viticulture and Enology, University Western Switzerland, Nyon, Switzerland
| | | | - Katia Gindro
- Plant Protection Research Division, Agroscope, Nyon, Switzerland
| | - Jean-Luc Wolfender
- School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland
- Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Geneva, Switzerland
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53
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Li M, Hameed I, Cao D, He D, Yang P. Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus. Int J Mol Sci 2020; 21:ijms21145087. [PMID: 32708483 PMCID: PMC7404260 DOI: 10.3390/ijms21145087] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 07/15/2020] [Accepted: 07/15/2020] [Indexed: 12/23/2022] Open
Abstract
Sacred lotus (Nelumbo nucifera Gaertn.) is a relic aquatic plant with two types of leaves, which have distinct rigidity of petioles. Here we assess the difference from anatomic structure to the expression of genes and proteins in two petioles types, and identify key pathways involved in petiole rigidity formation in sacred lotus. Anatomically, great variation between the petioles of floating and vertical leaves were observed. The number of collenchyma cells and thickness of xylem vessel cell wall was higher in the initial vertical leaves’ petiole (IVP) compared to the initial floating leaves’ petiole (IFP). Among quantified transcripts and proteins, 1021 and 401 transcripts presented 2-fold expression increment (named DEGs, genes differentially expressed between IFP and IVP) in IFP and IVP, 421 and 483 proteins exhibited 1.5-fold expression increment (named DEPs, proteins differentially expressed between IFP and IVP) in IFP and IVP, respectively. Gene function and pathway enrichment analysis displayed that DEGs and DEPs were significantly enriched in cell wall biosynthesis and lignin biosynthesis. In consistent with genes and proteins expressions in lignin biosynthesis, the contents of lignin monomers precursors were significantly different in IFP and IVP. These results enable us to understand lotus petioles rigidity formation better and provide valuable candidate genes information on further investigation.
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Affiliation(s)
- Ming Li
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China; (M.L.); (D.H.)
| | - Ishfaq Hameed
- Departments of Botany, University of Chitral, Chitral 17200, Khyber Pukhtunkhwa, Pakistan;
| | - Dingding Cao
- Institue of Oceanography, Minjiang University, Fuzhou 350108, China;
| | - Dongli He
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China; (M.L.); (D.H.)
| | - Pingfang Yang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China; (M.L.); (D.H.)
- Correspondence:
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Yu A, Zhao J, Wang Z, Cheng K, Zhang P, Tian G, Liu X, Guo E, Du Y, Wang Y. Transcriptome and metabolite analysis reveal the drought tolerance of foxtail millet significantly correlated with phenylpropanoids-related pathways during germination process under PEG stress. BMC PLANT BIOLOGY 2020; 20:274. [PMID: 32539796 PMCID: PMC7296958 DOI: 10.1186/s12870-020-02483-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Accepted: 06/04/2020] [Indexed: 05/06/2023]
Abstract
BACKGROUND Foxtail millet [Setaria italica (L.) P. Beauv.] is an excellent crop known for its superior level of drought tolerance across the world. Especially, less water is needed during its germination period than the other cereal crops. However, the knowledge of the mechanisms underlying the abiotic stress effects on seed germination of foxtail millet is largely unknown. RESULTS The water uptake pattern of foxtail millet seeds was ploted during germination period, according to which the germination time course of millet was separated into three phases. We sequenced the transcriptome of foxtail millet seeds, which were treated by PEG during different germination phases after sowing. The transcriptional studies revealed that more DEGs were identified during the further increase in water uptake period (phase III) than during the rapid initial uptake period (phase I) and the plateau period (phase II) under PEG stress. The pathway analysis of DEGs showed that the highly enriched categories were related to phenylpropanoid biosynthesis, plant hormone signal transduction and phenylalanine metabolism during phase III. The 20 phenylpropanoids-related genes of germinating foxtail millet were found to be down-regulated during the further increase in water uptake period under PEG stress. Further expression analysis identified 4 genes of phenylalanine ammonia-lyase, 4-coumarate-CoA ligase 3, cinnamoyl-CoA reductase 1, cationic peroxidase SPC4 in phenylpropanoids-related pathway, which played important roles in foxtail millet in response to PEG stress during different germination periods. The studies of metabolites in phenylpropanoid biosynthesis pathway revealed that higher amount of cinnamic acid was accumulated in germinating seeds under PEG stress, while the contents of p-coumaric acid, caffeic acid, ferulic acid and sinapic acid were decreased. And the effects of five phenolic compounds on germination and growth of foxtail millet showed that 1 mM concentration of cinnamic acid inhibited shoot and root growth, especially root development. Ferulic acid, caffeic acid, sinapic acid and p-coumaric acid could increase the root length and root/sprout in lower concentration. CONCLUSIONS These findings suggest that key genes and metabolites of foxtail millet related with phenylpropanoids pathway may play prominent roles in the regulation of resistance to drought during germination. Foxtail millet can probably avoid drought by regulating the levels of endogenous allelochemicals.
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Affiliation(s)
- Aili Yu
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Jinfeng Zhao
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China.
| | - Zhenhua Wang
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Kai Cheng
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Peng Zhang
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Gang Tian
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Xin Liu
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Erhu Guo
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Yanwei Du
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
| | - Yuwen Wang
- Millet Research Institute, Shanxi Academy of Agricultural Sciences, Changzhi, 046011, China
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Sun Y, Deng T, Zhang A, Moore MJ, Landis JB, Lin N, Zhang H, Zhang X, Huang J, Zhang X, Sun H, Wang H. Genome Sequencing of the Endangered Kingdonia uniflora (Circaeasteraceae, Ranunculales) Reveals Potential Mechanisms of Evolutionary Specialization. iScience 2020; 23:101124. [PMID: 32428861 PMCID: PMC7232092 DOI: 10.1016/j.isci.2020.101124] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 03/20/2020] [Accepted: 04/29/2020] [Indexed: 12/20/2022] Open
Abstract
Kingdonia uniflora, an alpine herb, has an extremely narrow distribution and represents a model for studying evolutionary mechanisms of species that have adapted to undisturbed environments for evolutionarily long periods of time. We assembled a 1,004.7-Mb draft genome (encoding 43,301 genes) of K. uniflora and found significant overrepresentation in gene families associated with DNA repair, underrepresentation in gene families associated with stress response, and loss of most plastid ndh genes. During the evolutionary process, the overrepresentation of gene families involved in DNA repair could help asexual K. uniflora reduce the accumulation of deleterious mutations, while reducing genetic diversity, which is important in responding to environment fluctuations. The underrepresentation of gene families related to stress response and functional loss of ndh genes could be due to lack or loss of ability to respond to environmental changes caused by long-term adaptation to a relatively stable ecological environment.
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Affiliation(s)
- Yanxia Sun
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China
| | - Tao Deng
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Aidi Zhang
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China
| | | | - Jacob B Landis
- Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA, USA; School of Integrative Plant Science, Section of Plant Biology and the L.H. Bailey Hortorium, Cornell University, Ithaca, NY, USA
| | - Nan Lin
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China
| | - Huajie Zhang
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China
| | - Xu Zhang
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China
| | - Jinling Huang
- Department of Biology, East Carolina University, Greenville, NC, USA
| | - Xiujun Zhang
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China.
| | - Hang Sun
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.
| | - Hengchang Wang
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, Hubei, China.
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56
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Koelmel JP, Napolitano MP, Ulmer CZ, Vasiliou V, Garrett TJ, Yost RA, Prasad MNV, Godri Pollitt KJ, Bowden JA. Environmental lipidomics: understanding the response of organisms and ecosystems to a changing world. Metabolomics 2020; 16:56. [PMID: 32307636 DOI: 10.1007/s11306-020-01665-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Accepted: 03/13/2020] [Indexed: 12/19/2022]
Abstract
BACKGROUND Understanding the interaction between organisms and the environment is important for predicting and mitigating the effects of global phenomena such as climate change, and the fate, transport, and health effects of anthropogenic pollutants. By understanding organism and ecosystem responses to environmental stressors at the molecular level, mechanisms of toxicity and adaptation can be determined. This information has important implications in human and environmental health, engineering biotechnologies, and understanding the interaction between anthropogenic induced changes and the biosphere. One class of molecules with unique promise for environmental science are lipids; lipids are highly abundant and ubiquitous across nearly all organisms, and lipid profiles often change drastically in response to external stimuli. These changes allow organisms to maintain essential biological functions, for example, membrane fluidity, as they adapt to a changing climate and chemical environment. Lipidomics can help scientists understand the historical and present biofeedback processes in climate change and the biogeochemical processes affecting nutrient cycles. Lipids can also be used to understand how ecosystems respond to historical environmental changes with lipid signatures dating back to hundreds of millions of years, which can help predict similar changes in the future. In addition, lipids are direct targets of environmental stressors, for example, lipids are easily prone to oxidative damage, which occurs during exposure to most toxins. AIM OF REVIEW This is the first review to summarize the current efforts to comprehensively measure lipids to better understand the interaction between organisms and their environment. This review focuses on lipidomic applications in the arenas of environmental toxicology and exposure assessment, xenobiotic exposures and health (e.g., obesity), global climate change, and nutrient cycles. Moreover, this review summarizes the use of and the potential for lipidomics in engineering biotechnologies for the remediation of persistent compounds and biofuel production. KEY SCIENTIFIC CONCEPT With the preservation of certain lipids across millions of years and our ever-increasing understanding of their diverse biological roles, lipidomic-based approaches provide a unique utility to increase our understanding of the contemporary and historical interactions between organisms, ecosystems, and anthropogenically-induced environmental changes.
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Affiliation(s)
- Jeremy P Koelmel
- Department of Chemistry, University of Florida, 125 Buckman Drive, Gainesville, FL, 32611, USA
- Department of Environmental Health Sciences, School of Public Health, Yale University, New Haven, CT, 06510, USA
| | - Michael P Napolitano
- CSS, Inc., under contract to National Oceanic and Atmospheric Administration, National Centers for Coastal Ocean Science, Hollings Marine Laboratory, 331 Fort Johnson Road, Charleston, SC, 29412, USA
| | - Candice Z Ulmer
- National Institute of Standards and Technology, Hollings Marine Laboratory, 331 Ft. Johnson Road, Charleston, SC, 29412, USA
| | - Vasilis Vasiliou
- Department of Environmental Health Sciences, School of Public Health, Yale University, New Haven, CT, 06510, USA
| | - Timothy J Garrett
- Department of Chemistry, University of Florida, 125 Buckman Drive, Gainesville, FL, 32611, USA
- Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, 32610, USA
| | - Richard A Yost
- Department of Chemistry, University of Florida, 125 Buckman Drive, Gainesville, FL, 32611, USA
- Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, 32610, USA
| | - M N V Prasad
- Department of Plant Sciences, University of Hyderabad, Hyderabad, Telangana, 500046, India
| | - Krystal J Godri Pollitt
- Department of Environmental Health Sciences, School of Public Health, Yale University, New Haven, CT, 06510, USA
| | - John A Bowden
- Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, 1333 Center Drive, Gainesville, FL, 32610, USA.
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Esmaeily S, Amin Samih M, Izadi H. Induced eggplant resistance against Trialeurodes vaporariorum triggered by jasmonic acid, abscisic acid, and Nesidiocoris tenuis feeding. BULLETIN OF ENTOMOLOGICAL RESEARCH 2020; 110:285-292. [PMID: 31559944 DOI: 10.1017/s0007485319000646] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Greenhouse whitefly, Trialeurodes vaporariorum Westwood, is one of the major insect pests of agricultural crops such as eggplant. Due to various difficulties associated with synthetic pesticides, more environmentally friendly alternative methods are greatly appreciated for controlling pests. In the present study, the induction of resistance was investigated in eggplant using root and foliar application of jasmonic acid, abscisic acid, as well as Nesidiocoris tenuis (Reuter) either individually or in combination against T. vaporariorum. The experiments were carried out under laboratory conditions inside a growth chamber, which was set at 27 ± 2°C, 50 ± 5% relative humidity with a 16 h day length. Our results showed an increase in plant resistance due to the higher immature mortality rates, longer immature periods, lower longevity of adults, and fecundity. In free-choice situation, oviposition on root jasmonic acid (RJA) + N. tenuis and root abscisic acid (RABA) + N. tenuis was similar, but numbers of eggs deposited on these plants were lower than other treatments and control plants. The plant enzyme activity and phenolic content were significantly greater in RJA + N. tenuis and RABA + N. tenuis, intermediate in individual treatments, and the lowest in control plants. Correspondingly, T. vaporariorum longevity, number of eggs produced per female, oviposition preference, all were lowest when the insects fed on these treatments. These findings suggest that the induction of resistance in eggplants with the physiological changes in the host plant leads to a reduction in whitefly damage.
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Affiliation(s)
- Saeideh Esmaeily
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Rafsanjan, Iran
| | - Mohammad Amin Samih
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Rafsanjan, Iran
| | - Hamzeh Izadi
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, Rafsanjan, Iran
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Rastogi S, Shah S, Kumar R, Kumar A, Shasany AK. Comparative temporal metabolomics studies to investigate interspecies variation in three Ocimum species. Sci Rep 2020; 10:5234. [PMID: 32251340 PMCID: PMC7089951 DOI: 10.1038/s41598-020-61957-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 02/20/2020] [Indexed: 11/08/2022] Open
Abstract
Ocimum is one of the most revered medicinally useful plants which have various species. Each of the species is distinct in terms of metabolite composition as well as the medicinal property. Some basil types are used more often as an aromatic and flavoring ingredient. It would be informative to know relatedness among the species which though belong to the same genera while exclusively different in terms of metabolic composition and the operating pathways. In the present investigation the similar effort has been made in order to differentiate three commonly occurring Ocimum species having the high medicinal value, these are Ocimum sanctum, O. gratissimum and O. kilimandscharicum. The parameters for the comparative analysis of these three Ocimum species comprised of temporal changes in number leaf trichomes, essential oil composition, phenylpropanoid pathway genes expression and the activity of important enzymes. O. gratissimum was found to be richest in phenylpropanoid accumulation as well as their gene expression when compared to O. sanctum while O. kilimandscharicum was found to be accumulating terpenoid. In order to get an overview of this qualitative and quantitative regulation of terpenes and phenylpropenes, the expression pattern of some important transcription factors involved in secondary metabolism were also studied.
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Affiliation(s)
- Shubhra Rastogi
- Centre for Biotechnology, Shiksha 'O' Anusandhan University, Bhubaneswar, 751003, Odisha, India
| | - Saumya Shah
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India
| | - Ritesh Kumar
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India
| | - Ajay Kumar
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India
| | - Ajit Kumar Shasany
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India.
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Cheng Y, Lin Y, Cao H, Li Z. Citrus Postharvest Green Mold: Recent Advances in Fungal Pathogenicity and Fruit Resistance. Microorganisms 2020; 8:E449. [PMID: 32209982 PMCID: PMC7143998 DOI: 10.3390/microorganisms8030449] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Revised: 03/10/2020] [Accepted: 03/21/2020] [Indexed: 01/04/2023] Open
Abstract
As the major postharvest disease of citrus fruit, postharvest green mold is caused by the necrotrophic fungus Penicillium digitatum (Pd), which leads to huge economic losses worldwide. Fungicides are still the main method currently used to control postharvest green mold in citrus fruit storage. Investigating molecular mechanisms of plant-pathogen interactions, including pathogenicity and plant resistance, is crucial for developing novel and safer strategies for effectively controlling plant diseases. Despite fruit-pathogen interactions remaining relatively unexplored compared with well-studied leaf-pathogen interactions, progress has occurred in the citrus fruit-Pd interaction in recent years, mainly due to their genome sequencing and establishment or optimization of their genetic transformation systems. Recent advances in Pd pathogenicity on citrus fruit and fruit resistance against Pd infection are summarized in this review.
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Affiliation(s)
- Yulin Cheng
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Yunlong Lin
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Haohao Cao
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Zhengguo Li
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
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Nazir M, Asad Ullah M, Mumtaz S, Siddiquah A, Shah M, Drouet S, Hano C, Abbasi BH. Interactive Effect of Melatonin and UV-C on Phenylpropanoid Metabolite Production and Antioxidant Potential in Callus Cultures of Purple Basil ( Ocimum basilicum L. var.s purpurascens). Molecules 2020; 25:E1072. [PMID: 32121015 PMCID: PMC7179200 DOI: 10.3390/molecules25051072] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 02/21/2020] [Accepted: 02/21/2020] [Indexed: 01/01/2023] Open
Abstract
The present study evaluated the interactive effect of melatonin and UV-C on phenylpropanoid metabolites profile and antioxidant potential of Ocimum basilicum L. Callus was treated with varying concentrations of melatonin and UV-C radiations for different time durations, either alone and/or in combination. Individual treatments of both UV-C and melatonin proved to be more effective than combine treatments. Results indicated that UV-C (10 min) exposure increased rosmarinic acid (134.5 mg/g dry weight (DW)), which was 2.3-fold greater than control. Chichoric acid (51.52 mg/g DW) and anthocyanin (cyanide 0.50 mg/g DW) were almost 4.1-fold, while peonidin was found 2.7-fold higher in UV-C (50 min) exposure. In the case of melatonin, 1.0 mg/L concentrations showed maximum rosmarinic acid (79.4 mg/g DW) accumulation; i.e., 1.4-fold more, as compared to the control. However, 2 mg/L melatonin accumulate chichoric acid (39.99 mg/g DW) and anthocyanin (cyanide: 0.45 mg/g DW and peonidin: 0.22 mg/g DW); i.e., 3.2, 3.7 and 2.0-fold increase, as compared to the control, respectively. On the other hand, melatonin-combined treatment (melatonin (Mel) (4 mg/L) + UV-C (20 min)) was proved to be effective in caffeic acid elicitation, which was 1.9-fold greater than the control. Furthermore, antioxidant potential was evaluated by both in vitro (DPPH, ABTS and FRAP assays) and in cellulo methods. Maximum in vitro antioxidant activity (DPPH: 90.6% and ABTS: 1909.5 µM) was observed for UV-C (50 min)-treated cultures. The highest in vitro antioxidant activity measured with the ABTS assay as compared to the FRAP assay, suggesting the main contribution of antioxidants from basil callus extracts acting through a hydrogen atom transfer (HAT) over an electron transfer (ET)-based mechanism. Cellular antioxidant assay was evaluated by production of ROS/RNS species using yeast cell cultures and further confirmed the protective action of the corresponding callus extracts against oxidative stress. Overall, both melatonin and UV-C are here proved to be effective elicitors since a positive correlation between the induced production of phenolic compounds, and in cellulo antioxidant action of basil callus extracts were observed.
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Affiliation(s)
- Munazza Nazir
- Department of Biotechnology, Quaid-i-Azam University, Islamabad-45320, Pakistan; (M.N.); (M.A.U.); (A.S.); (M.S.)
- Department of Botany, University of Azad Jammu &Kashmir, Muzaffarabad, Azad Kashmir 13230, Pakistan
| | - Muhammad Asad Ullah
- Department of Biotechnology, Quaid-i-Azam University, Islamabad-45320, Pakistan; (M.N.); (M.A.U.); (A.S.); (M.S.)
| | - Sadia Mumtaz
- Department of Biotechnology, Women University of Azad Jammu &Kashmir Bagh, Azad Kashmir 12500, Pakistan;
| | - Aisha Siddiquah
- Department of Biotechnology, Quaid-i-Azam University, Islamabad-45320, Pakistan; (M.N.); (M.A.U.); (A.S.); (M.S.)
| | - Muzamil Shah
- Department of Biotechnology, Quaid-i-Azam University, Islamabad-45320, Pakistan; (M.N.); (M.A.U.); (A.S.); (M.S.)
| | - Samantha Drouet
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA USC1328, Université d’Orléans, 45067 Orléans CEDEX 2, France or or (S.D.)
| | - Christophe Hano
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRA USC1328, Université d’Orléans, 45067 Orléans CEDEX 2, France or or (S.D.)
| | - Bilal Haider Abbasi
- Department of Biotechnology, Quaid-i-Azam University, Islamabad-45320, Pakistan; (M.N.); (M.A.U.); (A.S.); (M.S.)
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The CYP74 Gene Family in Watermelon: Genome-Wide Identification and Expression Profiling Under Hormonal Stress and Root-Knot Nematode Infection. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9120872] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Allene oxide synthase (AOS) and hydroperoxide lyase (HPL), members of the CYP74 gene family, are branches of the oxylipin pathway and play vital roles in plant responses to a number of stresses. In this study, four HPL genes and one AOS gene were identified in the watermelon genome, which were clustered into three subfamilies (CYP74A, CYP74B and CYP74C). Sequence analysis revealed that most HPL and AOS proteins from various plants contain representative domains, including Helix-I region, Helix-K region (ExxR) and Heme-binding domain. A number of development-, stress-, and hormone-related cis-elements were found in the promoter regions of the ClAOS and ClHPL genes, and the detected ClAOS and ClHPL genes were differentially expressed in different tissues and fruit development stages, as well as in response to various hormones. In addition, red light could enhance the expression of ClAOS in root-knot nematode-infected leaves and roots of watermelon, implying that ClAOS might play a primary role in red light-induced resistance against root-knot nematodes. These findings lay a foundation for understanding the specific function of CYP74 genes in watermelon.
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Li C, He Q, Zhang F, Yu J, Li C, Zhao T, Zhang Y, Xie Q, Su B, Mei L, Zhu S, Chen J. Melatonin enhances cotton immunity to Verticillium wilt via manipulating lignin and gossypol biosynthesis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 100:784-800. [PMID: 31349367 PMCID: PMC6899791 DOI: 10.1111/tpj.14477] [Citation(s) in RCA: 77] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 07/03/2019] [Accepted: 07/15/2019] [Indexed: 05/09/2023]
Abstract
Plants endure challenging environments in which they are constantly threatened by diverse pathogens. The soil-borne fungus Verticillium dahliae is a devastating pathogen affecting many plant species including cotton, in which it significantly reduces crop yield and fiber quality. Melatonin involvement in plant immunity to pathogens has been reported, but the mechanisms of melatonin-induced plant resistance are unclear. In this study, the role of melatonin in enhancing cotton resistance to V. dahliae was investigated. At the transcriptome level, exogenous melatonin increased the expression of genes in phenylpropanoid, mevalonate (MVA), and gossypol pathways after V. dahliae inoculation. As a result, lignin and gossypol, the products of these metabolic pathways, significantly increased. Silencing the serotonin N-acetyltransferase 1 (GhSNAT1) and caffeic acid O-methyltransferase (GhCOMT) melatonin biosynthesis genes compromised cotton resistance, with reduced lignin and gossypol levels after V. dahliae inoculation. Exogenous melatonin pre-treatment prior to V. dahliae inoculation restored the level of cotton resistance reduced by the above gene silencing effects. Melatonin levels were higher in resistant cotton cultivars than in susceptible cultivars after V. dahliae inoculation. The findings indicate that melatonin affects lignin and gossypol synthesis genes in phenylpropanoid, MVA, and gossypol pathways, thereby enhancing cotton resistance to V. dahliae.
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Affiliation(s)
- Cheng Li
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Qiuling He
- Zhejiang Key Laboratory of Plant Secondary Metabolism and RegulationZhejiang Sci‐Tech UniversityHangzhou310018China
| | - Fan Zhang
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Jingwen Yu
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Cong Li
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Tianlun Zhao
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Yi Zhang
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Qianwen Xie
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Bangrong Su
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Lei Mei
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Shuijin Zhu
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
| | - Jinhong Chen
- Zhejiang Key Laboratory of Crop GermplasmZhejiang UniversityHangzhou310058China
- Institute of Crop ScienceZhejiang UniversityHangzhou310058China
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Cardot C, Mappa G, La Camera S, Gaillard C, Vriet C, Lecomte P, Ferrari G, Coutos-Thévenot P. Comparison of the Molecular Responses of Tolerant, Susceptible and Highly Susceptible Grapevine Cultivars During Interaction With the Pathogenic Fungus Eutypa lata. FRONTIERS IN PLANT SCIENCE 2019; 10:991. [PMID: 31428114 PMCID: PMC6690011 DOI: 10.3389/fpls.2019.00991] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Accepted: 07/15/2019] [Indexed: 05/02/2023]
Abstract
Eutypa lata is the causal agent of eutypa dieback, one of the most destructive grapevine trunk disease that causes severe economic losses in vineyards worldwide. This fungus causes brown sectorial necrosis in wood which affect the vegetative growth. Despite intense research efforts made in the past years, no cure currently exists for this disease. Host responses to eutypa dieback are difficult to address because E. lata is a wood pathogen that causes foliar symptoms several years after infection. With the aim to classify the level of susceptibility of grapevine cultivars to the foliar symptoms caused by E. lata, artificial inoculations of Merlot, Cabernet Sauvignon, and Ugni Blanc were conducted over 3 years. Merlot was the most tolerant cultivar, whereas Ugni Blanc and Cabernet Sauvignon exhibited higher and differential levels of susceptibility. We took advantage of their contrasting phenotypes to explore their defense responses, including the activation of pathogenesis-related (PR) genes, oxylipin and phenylpropanoid pathways and the accumulation of stilbenes. These analyses were carried out using the millicell system that enables the molecular dialogue between E. lata mycelium and grapevine leaves to take place without physical contact. Merlot responded to E. lata by inducing the expression of a large number of defense-related genes. On the contrary, Ugni Blanc failed to activate such defense responses despite being able to perceive the fungus. To gain insight into the role of carbon partitioning in E. lata infected grapevine, we monitored the expression of plant genes involved in sugar transport and cleavage, and measured invertase activities. Our results evidence a coordinated up-regulation of VvHT5 and VvcwINV genes, and a stimulation of the cell wall invertase activity in leaves of Merlot elicited by E. lata, but not in Ugni Blanc. Altogether, this study indicates that the degree of cultivar susceptibility is associated with the activation of host defense responses, including extracellular sucrolytic machinery and hexose uptake during the grapevine/E. lata interaction. Given the role of these activities in governing carbon allocation through the plant, we postulate that the availability of sugar resources for either the host or the fungus is crucial for the outcome of the interaction.
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Affiliation(s)
- Chloé Cardot
- SEVE, Laboratoire Sucres & Echanges Végétaux-Environnement, UMR EBI, CNRS 7267, Université de Poitiers, Poitiers, France
- INRA, UMR 1065 SAVE (Santé et Agroécologie du Vignoble), Université de Bordeaux, Villenave d’Ornon, France
- BNIC (Bureau National Interprofessionnel du Cognac – Station Viticole), Cognac, France
| | - Gaetan Mappa
- SEVE, Laboratoire Sucres & Echanges Végétaux-Environnement, UMR EBI, CNRS 7267, Université de Poitiers, Poitiers, France
| | - Sylvain La Camera
- SEVE, Laboratoire Sucres & Echanges Végétaux-Environnement, UMR EBI, CNRS 7267, Université de Poitiers, Poitiers, France
| | - Cécile Gaillard
- SEVE, Laboratoire Sucres & Echanges Végétaux-Environnement, UMR EBI, CNRS 7267, Université de Poitiers, Poitiers, France
| | - Cécile Vriet
- SEVE, Laboratoire Sucres & Echanges Végétaux-Environnement, UMR EBI, CNRS 7267, Université de Poitiers, Poitiers, France
| | - Pascal Lecomte
- INRA, UMR 1065 SAVE (Santé et Agroécologie du Vignoble), Université de Bordeaux, Villenave d’Ornon, France
| | - Gérald Ferrari
- BNIC (Bureau National Interprofessionnel du Cognac – Station Viticole), Cognac, France
| | - Pierre Coutos-Thévenot
- SEVE, Laboratoire Sucres & Echanges Végétaux-Environnement, UMR EBI, CNRS 7267, Université de Poitiers, Poitiers, France
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Hu X, Puri KD, Gurung S, Klosterman SJ, Wallis CM, Britton M, Durbin-Johnson B, Phinney B, Salemi M, Short DPG, Subbarao KV. Proteome and metabolome analyses reveal differential responses in tomato -Verticillium dahliae-interactions. J Proteomics 2019; 207:103449. [PMID: 31323424 DOI: 10.1016/j.jprot.2019.103449] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 06/11/2019] [Accepted: 07/11/2019] [Indexed: 01/15/2023]
Abstract
Verticillium dahliae colonizes vascular tissue and causes vascular discoloration in susceptible hosts. Two well-defined races exist in V. dahliae populations from tomato and lettuce. In this study, proteins and metabolites obtained from stems of race 1-incompatible (Beefsteak) and -compatible (Early Pak) tomato cultivars were characterized. A total of 814 and 584 proteins in Beefsteak; and 456 and 637 proteins in Early Pak were identified in stem extracts of plants inoculated with races 1 and 2, respectively. A significant number of defense-related proteins were expressed in each tomato-V. dahliae interaction, as anticipated. However, phenylalanine ammonia-lyase (PAL), an important defense-associated enzyme of the phenylpropanoid pathway, in addition to remorin 1, NAD-dependent epimerase/dehydratase, and polyphenol oxidase were uniquely expressed in the incompatible interaction. Compared with the uninoculated control, significant overexpression of gene ontology terms associated with lignin biosynthesis, phenylpropanoid pathway and carbohydrate methylation were identified exclusively in the incompatible interaction. Phenolic compounds known to be involved in plant defense mechanisms were at higher levels in the incompatible relative to the compatible interactions. Based on our findings, PAL and enzymes involved defense-related secondary metabolism and the strengthening of cell walls is likely critical to confer resistance to race 1 of V. dahliae in tomato. SIGNIFICANCE: Verticillium dahliae, a soilborne fungal pathogen and a widely distributed fungal pathogen, colonizes vascular tissue and causes vascular discoloration in roots and stems, leaf wilting, and death of susceptible plant hosts. It causes billions of dollars in annual crop losses all over the world. The study focused on the proteomic and metabalomic of V. dahliae interactions (incompatible with Beefsteak and compatible with Early Pak tomato cultivars). Based on our findings, PAL and enzymes involved defense-related secondary metabolism and the strengthening of cell walls is likely critical to confer resistance to race 1 of V. dahliae in tomato.
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Affiliation(s)
- Xiaoping Hu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling 712100, China
| | | | | | - Steven J Klosterman
- United States Department of Agriculture, Agricultural Research Service (USDA-ARS), Salinas, CA 93905, USA
| | - Christopher M Wallis
- USDA-ARS San Joaquin Valley Agricultural Sciences Center, Crop Diseases, Pests and Genetics Research Unit, 9611 S. Riverbend Ave, Parlier, CA 93648, USA
| | - Monica Britton
- Genome Center and Bioinformatics Core Facility, University of California, Davis, CA 95616, USA
| | - Blythe Durbin-Johnson
- Genome Center and Bioinformatics Core Facility, University of California, Davis, CA 95616, USA
| | - Brett Phinney
- Genome Center and Bioinformatics Core Facility, University of California, Davis, CA 95616, USA
| | - Michelle Salemi
- Genome Center and Bioinformatics Core Facility, University of California, Davis, CA 95616, USA
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Zhang J, Jiang F, Shen Y, Zhan Q, Bai B, Chen W, Chi Y. Transcriptome analysis reveals candidate genes related to phosphorus starvation tolerance in sorghum. BMC PLANT BIOLOGY 2019; 19:306. [PMID: 31296169 PMCID: PMC6624980 DOI: 10.1186/s12870-019-1914-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Accepted: 06/30/2019] [Indexed: 05/20/2023]
Abstract
BACKGROUND Phosphorus (P) deficiency in soil is a worldwide issue and a major constraint on the production of sorghum, which is an important staple food, forage and energy crop. The depletion of P reserves and the increasing price of P fertilizer make fertilizer application impractical, especially in developing countries. Therefore, identifying sorghum accessions with low-P tolerance and understanding the underlying molecular basis for this tolerance will facilitate the breeding of P-efficient plants, thereby resolving the P crisis in sorghum farming. However, knowledge in these areas is very limited. RESULTS The 29 sorghum accessions used in this study demonstrated great variability in their tolerance to low-P stress. The internal P content in the shoot was correlated with P tolerance. A low-P-tolerant accession and a low-P-sensitive accession were chosen for RNA-seq analysis to identify potential underlying molecular mechanisms. A total of 2089 candidate genes related to P starvation tolerance were revealed and found to be enriched in 11 pathways. Gene Ontology (GO) enrichment analyses showed that the candidate genes were associated with oxidoreductase activity. In addition, further study showed that malate affected the length of the primary root and the number of tips in sorghum suffering from low-P stress. CONCLUSIONS Our results show that acquisition of P from soil contributes to low-P tolerance in different sorghum accessions; however, the underlying molecular mechanism is complicated. Plant hormone (including auxin, ethylene, jasmonic acid, salicylic acid and abscisic acid) signal transduction related genes and many transcriptional factors were found to be involved in low-P tolerance in sorghum. The identified accessions will be useful for breeding new sorghum varieties with enhanced P starvation tolerance.
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Affiliation(s)
- Jinglong Zhang
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province China
| | - Fangfang Jiang
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province China
| | - Yixin Shen
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province China
| | - Qiuwen Zhan
- College of Agriculture, Anhui Science and Technology University, Fengyang, China
| | - Binqiang Bai
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province China
| | - Wei Chen
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province China
| | - Yingjun Chi
- College of Agro-grassland Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province China
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Pott DM, Osorio S, Vallarino JG. From Central to Specialized Metabolism: An Overview of Some Secondary Compounds Derived From the Primary Metabolism for Their Role in Conferring Nutritional and Organoleptic Characteristics to Fruit. FRONTIERS IN PLANT SCIENCE 2019; 10:835. [PMID: 31316537 PMCID: PMC6609884 DOI: 10.3389/fpls.2019.00835] [Citation(s) in RCA: 134] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 06/11/2019] [Indexed: 05/23/2023]
Abstract
Fruit flavor and nutritional characteristics are key quality traits and ones of the main factors influencing consumer preference. Central carbon metabolism, also known as primary metabolism, contributes to the synthesis of intermediate compounds that act as precursors for plant secondary metabolism. Specific and specialized metabolic pathways that evolved from primary metabolism play a key role in the plant's interaction with its environment. In particular, secondary metabolites present in the fruit serve to increase its attractiveness to seed dispersers and to protect it against biotic and abiotic stresses. As a consequence, several important organoleptic characteristics, such as aroma, color, and fruit nutritional value, rely upon secondary metabolite content. Phenolic and terpenoid compounds are large and diverse classes of secondary metabolites that contribute to fruit quality and have their origin in primary metabolic pathways, while the delicate aroma of ripe fruits is formed by a unique combination of hundreds of volatiles that are derived from primary metabolites. In this review, we show that the manipulation of primary metabolism is a powerful tool to engineer quality traits in fruits, such as the phenolic, terpenoid, and volatile content. The enzymatic reactions responsible for the accumulation of primary precursors are bottlenecks in the transfer of metabolic flux from central to specialized metabolism and should be taken into account to increase the yield of the final products of the biosynthetic pathways. In addition, understanding the connection and regulation of the carbon flow between primary and secondary metabolism is a key factor for the development of fruit cultivars with enhanced organoleptic and nutritional traits.
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Affiliation(s)
| | - Sonia Osorio
- Departamento de Biología Molecular y Bioquímica, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga – Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Málaga, Spain
| | - José G. Vallarino
- Departamento de Biología Molecular y Bioquímica, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga – Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Málaga, Spain
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Rustgi S, Springer A, Kang C, von Wettstein D, Reinbothe C, Reinbothe S, Pollmann S. ALLENE OXIDE SYNTHASE and HYDROPEROXIDE LYASE, Two Non-Canonical Cytochrome P450s in Arabidopsis thaliana and Their Different Roles in Plant Defense. Int J Mol Sci 2019; 20:E3064. [PMID: 31234561 PMCID: PMC6627107 DOI: 10.3390/ijms20123064] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 06/19/2019] [Accepted: 06/20/2019] [Indexed: 11/16/2022] Open
Abstract
The channeling of metabolites is an essential step of metabolic regulation in all living organisms. Multifunctional enzymes with defined domains for metabolite compartmentalization are rare, but in many cases, larger assemblies forming multimeric protein complexes operate in defined metabolic shunts. In Arabidopsis thaliana, a multimeric complex was discovered that contains a 13-lipoxygenase and allene oxide synthase (AOS) as well as allene oxide cyclase. All three plant enzymes are localized in chloroplasts, contributing to the biosynthesis of jasmonic acid (JA). JA and its derivatives act as ubiquitous plant defense regulators in responses to both biotic and abiotic stresses. AOS belongs to the superfamily of cytochrome P450 enzymes and is named CYP74A. Another CYP450 in chloroplasts, hydroperoxide lyase (HPL, CYP74B), competes with AOS for the common substrate. The products of the HPL reaction are green leaf volatiles that are involved in the deterrence of insect pests. Both enzymes represent non-canonical CYP450 family members, as they do not depend on O2 and NADPH-dependent CYP450 reductase activities. AOS and HPL activities are crucial for plants to respond to different biotic foes. In this mini-review, we aim to summarize how plants make use of the LOX2-AOS-AOC2 complex in chloroplasts to boost JA biosynthesis over volatile production and how this situation may change in plant communities during mass ingestion by insect pests.
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Affiliation(s)
- Sachin Rustgi
- Department of Plant and Environmental Sciences, Pee Dee Research and Education Center, Clemson University, Florence, SC 29506, USA.
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA.
| | - Armin Springer
- Medizinische Biologie und Elektronenmikroskopisches Zentrum (EMZ), Universitätsmedizin Rostock, 18055 Rostock, Germany.
| | - ChulHee Kang
- Department of Chemistry, Biomolecular Crystallography Center, Washington State University, Pullman, WA 99164, USA.
| | - Diter von Wettstein
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA.
| | - Christiane Reinbothe
- Biologie Environnementale et Systémique (BEEeSy), Université Grenoble Alpes, BP 53, CEDEX, F-38041 Grenoble, France.
| | - Steffen Reinbothe
- Biologie Environnementale et Systémique (BEEeSy), Université Grenoble Alpes, BP 53, CEDEX, F-38041 Grenoble, France.
| | - Stephan Pollmann
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentación (INIA), Campus de Montegancedo, 28223 Pozuelo de Alarcón, Madrid, Spain.
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Yang J, Wang GQ, Zhou Q, Lu W, Ma JQ, Huang JH. Transcriptomic and proteomic response of Manihot esculenta to Tetranychus urticae infestation at different densities. EXPERIMENTAL & APPLIED ACAROLOGY 2019; 78:273-293. [PMID: 31168751 DOI: 10.1007/s10493-019-00387-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 05/30/2019] [Indexed: 05/24/2023]
Abstract
Tetranychus urticae (Acari: Tetranychidae) is an extremely serious cassava (Manihot esculenta) pest. Building a genomic resource to investigate the molecular mechanisms of cassava responses to T. urticae is vital for characterizing cassava resistance to mites. Based on the tolerance of cassava varieties to mite infestation (focusing on mite development rate, fecundity and physiology), cassava variety SC8 was selected to analyze transcriptomic and proteomic changes after 5 days of T. urticae feeding. Transcriptomic analysis revealed 698 and 2140 genes with significant expression changes under low and high mite infestation, respectively. More defense-related genes were found in the enrichment pathways at high mite density than at low density. In addition, iTRAQ-labeled proteomic analysis revealed 191 proteins with significant expression changes under low mite infestation. Differentially expressed genes and proteins were mainly found in the following defense-related pathways: flavonoid biosynthesis, phenylpropanoid biosynthesis, and glutathione metabolism under low-density mite feeding and plant hormone signal transduction and plant-pathogen interaction pathways under high-density mite feeding. The plant hormone signal transduction network, involving ethylene, jasmonic acid, and salicylic acid transduction pathways, was explored in relation to the M. esculenta response to T. urticae. Correlation analysis of the transcriptome and proteome generated a Pearson correlation coefficients of R = 0.2953 (P < 0.01), which might have been due to post-transcriptional or post-translational regulation resulting in many genes being inconsistently expressed at both the transcript and protein levels. In summary, the M. esculenta transcriptome and proteome changed in response to T. urticae, providing insight into the general activation of plant defense pathways in response to mite infestation.
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Affiliation(s)
- Juan Yang
- College of Agriculture, Guangxi University, Nanning, 530004, Guangxi, China
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, Guangxi University, Nanning, 530004, Guangxi, China
| | - Guo-Quan Wang
- College of Agriculture, Guangxi University, Nanning, 530004, Guangxi, China
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, Guangxi University, Nanning, 530004, Guangxi, China
| | - Qiong Zhou
- College of Agriculture, Guangxi University, Nanning, 530004, Guangxi, China
| | - Wen Lu
- College of Agriculture, Guangxi University, Nanning, 530004, Guangxi, China
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, Guangxi University, Nanning, 530004, Guangxi, China
| | - Jun-Qing Ma
- College of Agriculture, Guangxi University, Nanning, 530004, Guangxi, China
| | - Jing-Hua Huang
- College of Agriculture, Guangxi University, Nanning, 530004, Guangxi, China.
- Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, Guangxi University, Nanning, 530004, Guangxi, China.
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Nascimento R, Maia M, Ferreira AEN, Silva AB, Freire AP, Cordeiro C, Silva MS, Figueiredo A. Early stage metabolic events associated with the establishment of Vitis vinifera - Plasmopara viticola compatible interaction. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 137:1-13. [PMID: 30710794 DOI: 10.1016/j.plaphy.2019.01.026] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 01/17/2019] [Accepted: 01/18/2019] [Indexed: 05/25/2023]
Abstract
Grapevine (Vitis vinifera L.) is the most widely cultivated and economically important fruit crop in the world, with 7.5 million of production area in 2017. The domesticated varieties of grapevine are highly susceptible to many fungal infections, of which downy mildew, caused by the biotrophic oomycete Plasmopara viticola (Berk. et Curt.) Berl. et de Toni is one of the most threatening. In V. vinifera, several studies have shown that a weak and transient activation of a defense mechanism occurs, but it is easily overcome by the pathogen leading to the establishment of a compatible interaction. Major transcript, protein and physiologic changes were shown to occur at later infection time-points, but comprehensive data on the first hours of interaction is scarce. In the present work, we investigated the major physiologic and metabolic changes that occur in the first 24 h of interaction between V. vinifera cultivar Trincadeira and P. viticola. Our results show that there was a negative modulation of several metabolic classes associated to pathogen defense such as flavonoids or phenylpropanoids as well as an alteration of carbohydrate content after inoculation with the pathogen. We also found an accumulation of hydrogen peroxide and increase of lipid peroxidation but to a low extent, that seems to be insufficient to restrain pathogen growth during the initial biotrophic phase of the interaction.
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Affiliation(s)
- Rui Nascimento
- Biosystems & Integrative Sciences Institute (BioISI), Science Faculty of Lisbon University, 1749-016, Lisboa, Portugal
| | - Marisa Maia
- Biosystems & Integrative Sciences Institute (BioISI), Science Faculty of Lisbon University, 1749-016, Lisboa, Portugal; Laboratório de FTICR e Espectrometria de Massa Estrutural, Faculdade de Ciências da Universidade de Lisboa, Portugal; Centro de Química e Bioquímica, Faculdade de Ciências da Universidade de Lisboa, Portugal
| | - António E N Ferreira
- Laboratório de FTICR e Espectrometria de Massa Estrutural, Faculdade de Ciências da Universidade de Lisboa, Portugal; Centro de Química e Bioquímica, Faculdade de Ciências da Universidade de Lisboa, Portugal
| | - Anabela B Silva
- Biosystems & Integrative Sciences Institute (BioISI), Science Faculty of Lisbon University, 1749-016, Lisboa, Portugal
| | - Ana Ponces Freire
- Centro de Química e Bioquímica, Faculdade de Ciências da Universidade de Lisboa, Portugal
| | - Carlos Cordeiro
- Laboratório de FTICR e Espectrometria de Massa Estrutural, Faculdade de Ciências da Universidade de Lisboa, Portugal; Centro de Química e Bioquímica, Faculdade de Ciências da Universidade de Lisboa, Portugal
| | - Marta Sousa Silva
- Laboratório de FTICR e Espectrometria de Massa Estrutural, Faculdade de Ciências da Universidade de Lisboa, Portugal; Centro de Química e Bioquímica, Faculdade de Ciências da Universidade de Lisboa, Portugal.
| | - Andreia Figueiredo
- Biosystems & Integrative Sciences Institute (BioISI), Science Faculty of Lisbon University, 1749-016, Lisboa, Portugal.
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Zhang Y, Wu L, Wang X, Chen B, Zhao J, Cui J, Li Z, Yang J, Wu L, Wu J, Zhang G, Ma Z. The cotton laccase gene GhLAC15 enhances Verticillium wilt resistance via an increase in defence-induced lignification and lignin components in the cell walls of plants. MOLECULAR PLANT PATHOLOGY 2019; 20:309-322. [PMID: 30267563 PMCID: PMC6637971 DOI: 10.1111/mpp.12755] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Verticillium dahliae is a phytopathogenic fungal pathogen that causes vascular wilt diseases responsible for considerable decreases in cotton yields. The lignification of cell wall appositions is a conserved basal defence mechanism in the plant innate immune response. However, the function of laccase in defence-induced lignification has not been described. Screening of an SSH library of a resistant cotton cultivar, Jimian20, inoculated with V. dahliae revealed a laccase gene that was strongly induced by the pathogen. This gene was phylogenetically related to AtLAC15 and contained domains conserved by laccases; therefore, we named it GhLAC15. Quantitative reverse transcription-polymerase chain reaction indicated that GhLAC15 maintained higher expression levels in tolerant than in susceptible cultivars. Overexpression of GhLAC15 enhanced cell wall lignification, resulting in increased total lignin, G monolignol and G/S ratio, which significantly improved the Verticillium wilt resistance of transgenic Arabidopsis. In addition, the levels of arabinose and xylose were higher in transgenic plants than in wild-type plants, which resulted in transgenic Arabidopsis plants being less easily hydrolysed. Furthermore, suppression of the transcriptional level of GhLAC15 resulted in an increase in susceptibility in cotton. The content of monolignol and the G/S ratio were lower in silenced cotton plants, which led to resistant cotton cv. Jimian20 becoming susceptible. These results demonstrate that GhLAC15 enhances Verticillium wilt resistance via an increase in defence-induced lignification and arabinose and xylose accumulation in the cell wall of Gossypium hirsutum. This study broadens our knowledge of defence-induced lignification and cell wall modifications as defence mechanisms against V. dahliae.
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Affiliation(s)
- Yan Zhang
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Lizhu Wu
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Xingfen Wang
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Bin Chen
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Jing Zhao
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Jing Cui
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Zhikun Li
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Jun Yang
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Liqiang Wu
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Jinhua Wu
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Guiyin Zhang
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
| | - Zhiying Ma
- North China Key Laboratory for Germplasm Resources of Education MinistryHebei Agricultural UniversityBaoding071001China
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71
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Le Mire G, Siah A, Marolleau B, Gaucher M, Maumené C, Brostaux Y, Massart S, Brisset MN, Jijakli MH. Evaluation of λ-Carrageenan, CpG-ODN, Glycine Betaine, Spirulina platensis, and Ergosterol as Elicitors for Control of Zymoseptoria tritici in Wheat. PHYTOPATHOLOGY 2019; 109:409-417. [PMID: 30161014 DOI: 10.1094/phyto-11-17-0367-r] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Wheat crops are constantly challenged by the pathogen Zymoseptoria tritici, responsible for Septoria tritici Blotch (STB) disease. The present study reports the evaluation of five elicitor compounds (λ-carrageenan, cytosine-phosphate-guanine oligodesoxynucleotide motifs [CpG ODN], glycine betaine, Spirulina platensis, and ergosterol) for the protection of wheat against STB in order to offer new alternative tools to farmers for sustainable crop protection. Screening of elicitors of wheat defenses was carried out through a succession of experiments: biocidal in vitro tests enabled checking for any fungicidal activities, glasshouse experiments allowed determination of the efficacy of a given compound in protecting wheat against STB, and quantitative reverse-transcription polymerase chain reaction biomolecular tests investigated the relative expression of 23 defense genes in treated versus untreated plants. Therefore, we demonstrated that λ-carrageenan, CpG-ODN, glycine betaine, S. platensis, and ergosterol are potential elicitors of wheat defenses. Foliar treatment with these compounds conferred protection of wheat by up to approximately 70% against Z. tritici under semicontrolled conditions and induced both salicylic acid- and jasmonic acid-dependent signaling pathways in the plant. These findings contribute to extending the narrow list of potential elicitors of wheat defenses against Z. tritici.
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Affiliation(s)
- Geraldine Le Mire
- 1 Université de Liège, Gembloux Agro Bio-Tech, Centre de recherche TERRA, Laboratoire de phytopathologie intégrée et urbaine, Passage des déportés 2, 5030 Gembloux, Belgique
| | - Ali Siah
- 2 Institut Supérieur d'Agriculture (ISA) Lille, Institut de recherche Charles Violette (EA 7394), 48 Boulevard Vauban, F-59046 Lille cedex, France
| | - Brice Marolleau
- 3 Institut de Recherche en Horticulture et Semences (IRHS), INRA Angers, Equipe ResPOM, 42 rue Georges Morel, F-49071 Beaucouzé cedex, France
| | - Matthieu Gaucher
- 3 Institut de Recherche en Horticulture et Semences (IRHS), INRA Angers, Equipe ResPOM, 42 rue Georges Morel, F-49071 Beaucouzé cedex, France
| | - Claude Maumené
- 4 Arvalis-Institut du Végétal, Station expérimentale, 91720 Boigneville, France; and
| | - Yves Brostaux
- 5 Université de Liège, Gembloux Agro Bio-Tech, Centre de recherche TERRA, Statistiques, Informatiques et Mathématiques appliqués à la bioingénierie
| | - Sebastien Massart
- 1 Université de Liège, Gembloux Agro Bio-Tech, Centre de recherche TERRA, Laboratoire de phytopathologie intégrée et urbaine, Passage des déportés 2, 5030 Gembloux, Belgique
| | - Marie-Noëlle Brisset
- 3 Institut de Recherche en Horticulture et Semences (IRHS), INRA Angers, Equipe ResPOM, 42 rue Georges Morel, F-49071 Beaucouzé cedex, France
| | - M Haissam Jijakli
- 1 Université de Liège, Gembloux Agro Bio-Tech, Centre de recherche TERRA, Laboratoire de phytopathologie intégrée et urbaine, Passage des déportés 2, 5030 Gembloux, Belgique
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Surface chemical defence of the eelgrass Zostera marina against microbial foulers. Sci Rep 2019; 9:3323. [PMID: 30804483 PMCID: PMC6389981 DOI: 10.1038/s41598-019-39212-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 01/17/2019] [Indexed: 12/30/2022] Open
Abstract
Plants rely on both mechanical and chemical defence mechanisms to protect their surfaces against microorganisms. The recently completed genome of the eelgrass Zostera marina, a marine angiosperm with fundamental importance for coastal ecosystems, showed that its re-adaptation from land to the sea has led to the loss of essential genes (for chemical communication and defence) and structural features (stomata and thick cuticle) that are typical of terrestrial plants. This study was designed to understand the molecular nature of surface protection and fouling-control strategy of eelgrass against marine epiphytic yeasts. Different surface extraction methods and comparative metabolomics by tandem mass spectrometry (LC-MS/MS) were used for targeted and untargeted identification of the metabolite profiles of the leaf surface and the whole tissue extracts. Desorption electrospray ionization-imaging mass spectrometry (DESI-IMS) coupled with traditional bioassays revealed, for the first time, the unique spatial distribution of the eelgrass surface-associated phenolics and fatty acids, as well as their differential bioactivity against the growth and settlement of epiphytic yeasts. This study provides insights into the complex chemical defence system of the eelgrass leaf surface. It suggests that surface-associated metabolites modulate biotic interactions and provide chemical defence and structural protection to eelgrass in its marine environment.
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73
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Nazir M, Tungmunnithum D, Bose S, Drouet S, Garros L, Giglioli-Guivarc'h N, Abbasi BH, Hano C. Differential Production of Phenylpropanoid Metabolites in Callus Cultures of Ocimum basilicum L. with Distinct In Vitro Antioxidant Activities and In Vivo Protective Effects against UV stress. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:1847-1859. [PMID: 30681331 DOI: 10.1021/acs.jafc.8b05647] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Ocimum basilicum L. (Purple basil) is a source of biologically active antioxidant compounds, particularly phenolic acids and anthocyanins. In this study, we have developed a valuable protocol for the establishment of in vitro callus cultures of O. basilicum and culture conditions for the enhanced production of distinct classes of phenylpropanoid metabolites such as hydroxycinnamic acid derivatives (caffeic acid, chicoric acid, rosmarinic acid) and anthocyanins (cyanidin and peonidin). Callus cultures were established by culturing leaf explants on Murashige and Skoog medium augmented with different concentrations of plant growth regulators (PGRs) [thidiazuron (TDZ), α-naphthalene acetic acid (NAA), and 6-benzyl amino purine (BAP)] either alone or in combination with 1.0 mg/L NAA. Among all the above-mentioned PGRs, NAA at 2.5 mg/L led to the highest biomass accumulation (23.2 g/L DW), along with total phenolic (TPP; 210.7 mg/L) and flavonoid (TFP; 196.4 mg/L) production, respectively. HPLC analysis confirmed the differential accumulation of phenolic acid [caffeic acid (44.67 mg/g DW), rosmarinic acid (52.22 mg/g DW), and chicoric acid (43.89 mg/g DW)] and anthocyanins [cyanidin (16.39 mg/g DW) and peonidin (10.77 mg/g DW)] as a function of the PGRs treatment. The highest in vitro antioxidant activity was determined with the ORAC assay as compared to the FRAP assay, suggesting the prominence of the HAT over the ET-based mechanism for the antioxidant action of callus extracts. Furthermore, in vivo results illustrated the protective action of the callus extract to limit the deleterious effects of UV-induced oxidative stress, ROS/RNS production, and membrane integrity in yeast cell culture. Altogether, these results clearly demonstrated the great potential of in vitro callus of O. basilicum as a source of human health-promoting antioxidant phytochemicals.
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Affiliation(s)
- Munazza Nazir
- Department of Biotechnology , Quaid-i-Azam University , Islamabad 45320 , Pakistan
- Department of Botany , University of Azad Jammu & Kashmir , Muzaffarabad , Azad Kashmir 13230 , Pakistan
| | - Duangjai Tungmunnithum
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Plant Lignans Team, EA 1207, INRA USC1328 , Université d'Orléans , F 28000 Chartres , France
- Department of Pharmaceutical Botany, Faculty of Pharmacy , Mahidol University , 447 Sri-Ayuthaya Road , Rajathevi, Bangkok 10400 , Thailand
- COSM'ACTIFS, Bioactifs et Cosmétiques, CNRS GDR3711, 45067 CEDEX 2 Orléans , France
| | - Shankhamala Bose
- Biomolécules et Biotechnologies Végétales (BBV), EA2106 , Université de Tours , 37200 Tours , France
| | - Samantha Drouet
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Plant Lignans Team, EA 1207, INRA USC1328 , Université d'Orléans , F 28000 Chartres , France
- COSM'ACTIFS, Bioactifs et Cosmétiques, CNRS GDR3711, 45067 CEDEX 2 Orléans , France
| | - Laurine Garros
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Plant Lignans Team, EA 1207, INRA USC1328 , Université d'Orléans , F 28000 Chartres , France
- COSM'ACTIFS, Bioactifs et Cosmétiques, CNRS GDR3711, 45067 CEDEX 2 Orléans , France
- Institut de Chimie Organique et Analytique (ICOA) UMR7311 , Université d'Orléans-CNRS , 45067 CEDEX 2 Orléans , France
| | | | - Bilal Haider Abbasi
- Department of Biotechnology , Quaid-i-Azam University , Islamabad 45320 , Pakistan
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Plant Lignans Team, EA 1207, INRA USC1328 , Université d'Orléans , F 28000 Chartres , France
- Biomolécules et Biotechnologies Végétales (BBV), EA2106 , Université de Tours , 37200 Tours , France
- COSM'ACTIFS, Bioactifs et Cosmétiques, CNRS GDR3711, 45067 CEDEX 2 Orléans , France
| | - Christophe Hano
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Plant Lignans Team, EA 1207, INRA USC1328 , Université d'Orléans , F 28000 Chartres , France
- COSM'ACTIFS, Bioactifs et Cosmétiques, CNRS GDR3711, 45067 CEDEX 2 Orléans , France
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Wulff JA, Kiani M, Regan K, Eubanks MD, Szczepaniec A. Neonicotinoid Insecticides Alter the Transcriptome of Soybean and Decrease Plant Resistance. Int J Mol Sci 2019; 20:E783. [PMID: 30759791 PMCID: PMC6387383 DOI: 10.3390/ijms20030783] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Revised: 02/08/2019] [Accepted: 02/11/2019] [Indexed: 11/17/2022] Open
Abstract
Neonicotinoids are widely used systemic insecticides that have been associated with spider mite outbreaks on diverse plants. These insecticides have complex effects on plant physiology, which have been speculated to drive enhanced performance of spider mites. We used RNA-Seq to explore how neonicotinoids modify gene expression in soybean thereby lowering plant resistance. We exposed soybean (Glycine max L.) to two neonicotinoid insecticides, thiamethoxam applied to seeds and imidacloprid applied as a soil drench, and we exposed a subset of these plants to spider mites (Tetranychus cinnabarinus). Applications of both insecticides downregulated genes involved in plant-pathogen interactions, phytohormone pathways, phenylpropanoid pathway, and cell wall biosynthesis. These effects were especially pronounced in plants exposed to thiamethoxam. Introduction of spider mites restored induction of genes in these pathways in plants treated with imidacloprid, while expression of genes involved in phenylpropanoid synthesis, in particular, remained downregulated in thiamethoxam-treated plants. Our outcomes indicate that both insecticides suppress genes in pathways relevant to plant⁻arthropod interactions, and suppression of genes involved in cell wall synthesis may explain lower plant resistance to spider mites, cell-content feeders. These effects appear to be particularly significant when plants are exposed to neonicotinoids applied to soybean seeds.
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Affiliation(s)
- Jason A Wulff
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA.
| | - Mahnaz Kiani
- Department of Entomology, Texas A&M AgriLife Research, Amarillo, TX 79106, USA.
| | - Karly Regan
- Department of Entomology, Penn State University, University Park, PA 16801, USA.
| | - Micky D Eubanks
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA.
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Rastogi S, Shah S, Kumar R, Vashisth D, Akhtar MQ, Kumar A, Dwivedi UN, Shasany AK. Ocimum metabolomics in response to abiotic stresses: Cold, flood, drought and salinity. PLoS One 2019; 14:e0210903. [PMID: 30726239 PMCID: PMC6364901 DOI: 10.1371/journal.pone.0210903] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Accepted: 01/03/2019] [Indexed: 11/19/2022] Open
Abstract
Ocimum tenuiflorum is a widely used medicinal plant since ancient times and still continues to be irreplaceable due to its properties. The plant has been explored chemically and pharmacologically, however, the molecular studies have been started lately. In an attempt to get a comprehensive overview of the abiotic stress response in O. tenuiflorum, de novo transcriptome sequencing of plant leaves under the cold, drought, flood and salinity stresses was carried out. A comparative differential gene expression (DGE) study was carried out between the common transcripts in each stress with respect to the control. KEGG pathway analysis and gene ontology (GO) enrichment studies exhibited several modifications in metabolic pathways as the result of four abiotic stresses. Besides this, a comparative metabolite profiling of stress and control samples was performed. Among the cold, drought, flood and salinity stresses, the plant was most susceptible to the cold stress. Severe treatments of all these abiotic stresses also decreased eugenol which is the main secondary metabolite present in the O. tenuiflorum plant. This investigation presents a comprehensive analysis of the abiotic stress effects in O. tenuiflorum. Current study provides an insight to the status of pathway genes’ expression that help synthesizing economically valuable phenylpropanoids and terpenoids related to the adaptation of the plant. This study identified several putative abiotic stress tolerant genes which can be utilized to either breed stress tolerant O. tenuiflorum through pyramiding or generating transgenic plants.
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Affiliation(s)
- Shubhra Rastogi
- Department of Biochemistry, University of Lucknow, Lucknow, Uttar Pradesh, India
| | - Saumya Shah
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, Uttar Pradesh, India
| | - Ritesh Kumar
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, Uttar Pradesh, India
| | - Divya Vashisth
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, Uttar Pradesh, India
| | - Md Qussen Akhtar
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, Uttar Pradesh, India
| | - Ajay Kumar
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, Uttar Pradesh, India
| | - Upendra Nath Dwivedi
- Department of Biochemistry, University of Lucknow, Lucknow, Uttar Pradesh, India
| | - Ajit Kumar Shasany
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, Uttar Pradesh, India
- * E-mail:
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Yan F, Li H, Zhao P. Genome-Wide Identification and Transcriptional Expression of the PAL Gene Family in Common Walnut ( Juglans Regia L.). Genes (Basel) 2019; 10:E46. [PMID: 30650597 PMCID: PMC6357058 DOI: 10.3390/genes10010046] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 01/10/2019] [Accepted: 01/10/2019] [Indexed: 12/19/2022] Open
Abstract
Juglans regia L. is an economically important crop cultivated worldwide for its high quality and quantity of wood and nuts. Phenylalanine ammonia-lyase (PAL) is the first enzyme in the phenylpropanoid pathway that plays a critical role in plant growth, development, and adaptation, but there have been few reports of the PAL gene family in common walnut. Here, we report a genome-wide study of J. regiaPAL genes and analyze their phylogeny, duplication, microRNA, and transcriptional expression. A total of 12 PAL genes were identified in the common walnut and clustered into two subfamilies based on phylogenetic analysis. These common walnut PALs are distributed on eight different pseudo-chromosomes. Seven of the 12 PALs (JrPAL2-3, JrPAL4-2, JrPAL2-1, JrPAL4-1, JrPAL8, JrPAL9, and JrPAL6) were specific found in J. regia, and JrPAL3, JrPAL5, JrPAL1-2, JrPAL7, and JrPAL2-2 were found to be closely associated with the woody plant Populus trichocarpa. Additionally, the expression patterns of JrPAL3, JrPAL7, JrPAL9, and JrPAL2-1 showed that they had high expression in female and male flowers. The miRNA ath-miR830-5p regulates two genes, JrPAL5 and JrPAL1, such that they have low expression in the male and female flowers of the common walnut. Our research provides useful information for further research into the function of PAL genes in common walnut and Juglans.
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Affiliation(s)
- Feng Yan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi 710069, China.
| | - Huaizhu Li
- School of Chemistry and Chemical Engineering, Xianyang Normal University, Xianyang 712000, China.
| | - Peng Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi 710069, China.
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77
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Wei S, Wang X, Jiang D, Dong S. Physiological and proteome studies of maize (Zea mays L.) in response to leaf removal under high plant density. BMC PLANT BIOLOGY 2018; 18:378. [PMID: 30594144 PMCID: PMC6310946 DOI: 10.1186/s12870-018-1607-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Accepted: 12/17/2018] [Indexed: 05/25/2023]
Abstract
BACKGROUND Under high plant density, intensifying competition among individual plants led to overconsumption of energy and nutrients and resulted in an almost dark condition in the lower strata of the canopy, which suppressed the photosynthetic potential of the shaded leaves. Leaf removal could help to ameliorate this problem and increase crop yields. To reveal the mechanism of leaf removal in maize, tandem mass tags label-based quantitative analysis coupled with liquid chromatography-tandem mass spectrometry were used to capture the differential protein expression profiles of maize subjected to the removal of the two uppermost leaves (S2), the four uppermost leaves (S4), and with no leaf removal as control (S0). RESULTS Excising leaves strengthened the light transmission rate of the canopy and increased the content of malondialdehyde, whereas decreased the activities of superoxide dismutase and peroxidase. Two leaves removal increased the photosynthetic capacity of ear leaves and the grain yield significantly, whereas S4 decreased the yield markedly. Besides, 239 up-accumulated proteins and 99 down-accumulated proteins were identified between S2 and S0, which were strongly enriched into 30 and 23 functional groups; 71 increased proteins and 42 decreased proteins were identified between S4 and S0, which were strongly enriched into 22 and 23 functional groups, for increased and decreased proteins, respectively. CONCLUSIONS Different defoliation levels had contrastive effects on maize. The canopy light transmission rate was strengthened and proteins related to photosynthetic electron-transfer reaction were up-regulated significantly for treatment S2, which improved the leaf photosynthetic capacity, and obtained a higher grain yield consequently. In contrast, S4 decreased the grain yield and increased the expressions of proteins and genes associated with fatty acid metabolism. Besides, both S2 and S4 exaggerated the defensive response of maize in physiological and proteomic level. Although further studies are required, the results in our study provide new insights to the further improvement in maize grain yield by leaf removal.
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Affiliation(s)
- Shanshan Wei
- College of Agriculture/Key Laboratory of Crop Physiology, Ecology and Management, Ministry of Agriculture/Hi-Tech Key Laboratory of Information Agriculture of Jiangsu Province, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province People’s Republic of China
- State Key Laboratory of Crop Biology, College of Agriculture, Shandong Agricultural University, Tai’an, 271018 Shandong Province People’s Republic of China
| | - Xiangyu Wang
- State Key Laboratory of Crop Biology, College of Agriculture, Shandong Agricultural University, Tai’an, 271018 Shandong Province People’s Republic of China
- College of Life Science, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province People’s Republic of China
| | - Dong Jiang
- College of Agriculture/Key Laboratory of Crop Physiology, Ecology and Management, Ministry of Agriculture/Hi-Tech Key Laboratory of Information Agriculture of Jiangsu Province, Nanjing Agricultural University, Nanjing, 210095 Jiangsu Province People’s Republic of China
| | - Shuting Dong
- State Key Laboratory of Crop Biology, College of Agriculture, Shandong Agricultural University, Tai’an, 271018 Shandong Province People’s Republic of China
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Seo MJ, Kang WR, Yang EJ, Shin KC, Ko YJ, Oh DK. Molecular characterization of Penicillium oxalicum 6R,8R-linoleate diol synthase with new regiospecificity. Biochim Biophys Acta Mol Cell Biol Lipids 2018; 1864:577-586. [PMID: 30342100 DOI: 10.1016/j.bbalip.2018.10.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Revised: 10/09/2018] [Accepted: 10/14/2018] [Indexed: 12/26/2022]
Abstract
Diol synthase-derived metabolites are involved in the sexual and asexual life cycles of fungi. A putative diol synthase from Penicillium oxalicum was found to convert palmitoleic acid (16:1n-7), oleic acid (18:1n-9), linoleic acid (18:2n-6), and α-linolenic acid (18:3n-3) to 6S,8R-dihydroxy-9(Z)-hexadecenoic acid, 6R,8R-dihydroxy-9(Z)-octadecenoic acid, 6R,8R-dihydroxy-9,12(Z,Z)-octadecadienoic acid, and 6S,8R-dihydroxy-9,12,15(Z,Z,Z)-octadecatrienoic acid, respectively, which were identified by liquid chromatography-tandem mass spectrometry (LC-MS/MS) and nuclear magnetic resonance (NMR) spectroscopy analyses. The specific activity and catalytic efficiency of P. oxalicum 6,8-diol synthase were the highest for 18:2n-6, indicating that the enzyme is a 6R,8R-linoleate diol synthase (6R,8R-LDS) with new regiospecificity. This is the first report of a 6R,8R-LDS. LDS is a fusion protein consisting of a dioxygenase domain at the N-terminus and a cytochrome P450/hydroperoxide isomerase (P450/HPI) domain at the C-terminus. The putative active-site residues in the C-terminal domain of P. oxalicum 6R,8R-LDS were proposed based on a substrate-docking homology model. The results of the site-directed mutagenesis within C-terminal P450 domain suggested that Asn886, Arg707, and Arg934, are catalytic importance and belong to the catalytic groove. Phe794 and Gln889 were found to be involved in the regiospecific rearrangement of hydroperoxide, while the F794E and Q889A variants of P. oxalicum 6,8-LDS acted as 7,8- and 8,11-LDSs, respectively. All these mutations critically affected the HPI activity of P. oxalicum 6R,8R-LDS.
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Affiliation(s)
- Min-Ju Seo
- Department of Bioscience and Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Woo-Ri Kang
- Department of Bioscience and Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Eun-Joo Yang
- Department of Bioscience and Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Kyung-Chul Shin
- Department of Bioscience and Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea
| | - Yoon-Joo Ko
- National Center for Inter-University Research Facilities (NCIRF), Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Republic of Korea
| | - Deok-Kun Oh
- Department of Bioscience and Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea.
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79
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Yu Z, Dong L, Jiang Z, Yi K, Zhang J, Zhang Z, Zhu Z, Wu Y, Xu M, Ni J. A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice. RICE (NEW YORK, N.Y.) 2018; 11:54. [PMID: 30284062 PMCID: PMC6170248 DOI: 10.1186/s12284-018-0250-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 09/27/2018] [Indexed: 05/06/2023]
Abstract
The mechanisms of plant defense against pathogen attack in plant leaves have been extensively studied. However, our understanding of plant defense mechanisms in plant roots is still limited. In this study, a semi-dominant mutant nrtp1-D (necrotic root tip 1), with a short-root phenotype, was characterized in rice. Map-based cloning revealed that NRTP1 encoded a typical coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) type protein and the mutation caused an amino acid substitution in the Nucleotide-Binding adaptor shared by Apaf1, certain R genes and CED4 (NB-ARC) domain, which may cause constitutive auto-activation of the NRTP1 protein. Gene expression analysis revealed that NRTP1 was preferentially expressed in rice roots. Expression of mutant nrtp1-D in tobacco leaves induced necrotic lesions, which indicated a common mechanism of plant defense response between leaves and roots. Transcriptome analysis revealed that many typical defense-response genes were differentially expressed in homozygous nrtp1-D. In addition, we also found differential expression of genes in pathways which had not previously been described as being associated with pathogen response. Histochemical analysis showed that the level of nitric oxide (NO), but not reactive oxygen species (ROS), was increased in homozygous nrtp1-D mutant roots. These results indicate that, in addition to the mechanism of defense response common to both roots and shoots, a novel pathway may also exist in rice roots, which does not operate in shoots.
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Affiliation(s)
- Zhiming Yu
- College of Life and Environmental Science, Hangzhou Normal University, No. 16 Xuelin Street, Hangzhou, 310018 Xiasha District China
| | - Lixiang Dong
- College of Life and Environmental Science, Hangzhou Normal University, No. 16 Xuelin Street, Hangzhou, 310018 Xiasha District China
| | - Zhifang Jiang
- College of Life and Environmental Science, Hangzhou Normal University, No. 16 Xuelin Street, Hangzhou, 310018 Xiasha District China
| | - Keke Yi
- Key Laboratory of Plant Nutrition and Fertilizers, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 10081 China
| | - Jianhua Zhang
- Faculty of Science, Hong Kong Baptist University, Hong Kong, China
| | - Zhongchen Zhang
- College of Agriculture, Northeast Agricultural University, Harbin, 150030 China
| | - Zhenxing Zhu
- Agricultural Crops Molecular Improving Lab, Liaoning Academy of Agricultural Sciences, Shenyang, 110161 China
| | - Yuhuan Wu
- College of Life and Environmental Science, Hangzhou Normal University, No. 16 Xuelin Street, Hangzhou, 310018 Xiasha District China
| | - Maojun Xu
- College of Life and Environmental Science, Hangzhou Normal University, No. 16 Xuelin Street, Hangzhou, 310018 Xiasha District China
| | - Jun Ni
- College of Life and Environmental Science, Hangzhou Normal University, No. 16 Xuelin Street, Hangzhou, 310018 Xiasha District China
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80
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Battilani P, Lanubile A, Scala V, Reverberi M, Gregori R, Falavigna C, Dall'asta C, Park Y, Bennett J, Borrego EJ, Kolomiets MV. Oxylipins from both pathogen and host antagonize jasmonic acid-mediated defence via the 9-lipoxygenase pathway in Fusarium verticillioides infection of maize. MOLECULAR PLANT PATHOLOGY 2018; 19:2162-2176. [PMID: 29660236 PMCID: PMC6638020 DOI: 10.1111/mpp.12690] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Revised: 03/22/2018] [Accepted: 04/08/2018] [Indexed: 05/29/2023]
Abstract
Oxylipins are a newly emerging group of signals that serve defence roles or promote virulence. To identify specific host and fungal genes and oxylipins governing the interactions between maize and Fusarium verticillioides, maize wild-type and lipoxygenase3 (lox3) mutant were inoculated with either F. verticillioides wild-type or linoleate-diol-synthase 1-deleted mutant (ΔFvlds1D). The results showed that lox3 mutants were more resistant to F. verticillioides. The reduced colonization on lox3 was associated with reduced fumonisin production and with a stronger and earlier induction of ZmLOX4, ZmLOX5 and ZmLOX12. In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence. Oxylipin profiling revealed a dramatic reduction in fungal linoleate diol synthase 1 (LDS1)-derived oxylipins, especially 8-HpODE (8-hydroperoxyoctadecenoic acid), in infected lox3 kernels, indicating the importance of this molecule in virulence. Collectively, we make the following conclusions: (1) LOX3 is a major susceptibility factor induced by fungal LDS1-derived oxylipins to suppress JA-stimulating 9-LOXs; (2) LOX3-mediated signalling promotes the biosynthesis of virulence-promoting oxylipins in the fungus; and (3) both fungal LDS1- and host LOX3-produced oxylipins are essential for the normal infection and colonization processes of maize seed by F. verticillioides.
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Affiliation(s)
- Paola Battilani
- Department of Sustainable Crop ProductionUniversità Cattolica del Sacro Cuore29122 PiacenzaItaly
| | - Alessandra Lanubile
- Department of Sustainable Crop ProductionUniversità Cattolica del Sacro Cuore29122 PiacenzaItaly
| | - Valeria Scala
- CREA‐DC, Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria, Research Center for Plant Protection and Certification00156 RomeItaly
| | - Massimo Reverberi
- Department of Environmental BiologyUniversity of Rome “Sapienza”00165 RomeItaly
| | - Rossella Gregori
- Department of Sustainable Crop ProductionUniversità Cattolica del Sacro Cuore29122 PiacenzaItaly
| | - Claudia Falavigna
- Department of Organic and Industrial ChemistryUniversity of Parma43124 ParmaItaly
| | - Chiara Dall'asta
- Department of Organic and Industrial ChemistryUniversity of Parma43124 ParmaItaly
| | - Yong‐Soon Park
- BK21 plus program, College of Biological Sciences and BiotechnologyChungnam National UniversityDaejeon 34134South Korea
| | - John Bennett
- Department of Plant Pathology and MicrobiologyTexas A&M University, College StationTX 77843‐2132USA
| | - Eli J. Borrego
- Department of Plant Pathology and MicrobiologyTexas A&M University, College StationTX 77843‐2132USA
| | - Michael V. Kolomiets
- Department of Plant Pathology and MicrobiologyTexas A&M University, College StationTX 77843‐2132USA
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81
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Kolaj I, Imindu Liyanage S, Weaver DF. Phenylpropanoids and Alzheimer's disease: A potential therapeutic platform. Neurochem Int 2018; 120:99-111. [PMID: 30098379 DOI: 10.1016/j.neuint.2018.08.001] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 08/01/2018] [Accepted: 08/06/2018] [Indexed: 12/21/2022]
Abstract
Alzheimer's disease (AD) is a neurodegenerative disorder, characterized by progressive dementia, neuroinflammation and the accumulation of intracellular neurofibrillary tangles and extracellular plaques. The etiology of AD is unclear, but is generally attributed to four leading hypotheses: (i) abnormal folding and aggregation of amyloid-β (Aβ)/tau proteins (ii) activation of the innate immune system, (iii) mitochondrial dysfunction, and (iv) oxidative stress. To date, therapeutic strategies have largely focused on Aβ-centric targets; however, the repeated failure of clinical trials and the continued lack of a disease-modifying therapy demand novel, multifaceted approaches. Natural products are common molecular platforms in drug development; in AD, compounds from the plant phenylpropanoid metabolic pathway have yielded promising associations. Herein, we review developments in the pathogenesis of AD and the metabolism of phenylpropanoids in plants. We further discuss the role of these metabolites as relevant to the four leading mechanisms of AD pathogenesis, and observe multiple protective effects among phenylpropanoids against AD onset and progression.
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Affiliation(s)
- Igri Kolaj
- Krembil Research Institute, University Health Network, Krembil Discovery Tower, 60 Leonard Avenue, 4KD-473, Toronto, ON, M5T 0S8, Canada; Department of Chemistry, University of Toronto, 80 St.George Street, Toronto, ON, M5S 3H6, Canada.
| | - S Imindu Liyanage
- Krembil Research Institute, University Health Network, Krembil Discovery Tower, 60 Leonard Avenue, 4KD-473, Toronto, ON, M5T 0S8, Canada.
| | - Donald F Weaver
- Krembil Research Institute, University Health Network, Krembil Discovery Tower, 60 Leonard Avenue, 4KD-473, Toronto, ON, M5T 0S8, Canada; Department of Chemistry, University of Toronto, 80 St.George Street, Toronto, ON, M5S 3H6, Canada; Faculty of Medicine, University of Toronto, 1 King's College Circle, Toronto, ON, M5S 1A8, Canada.
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82
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Ceballos-Laita L, Gutierrez-Carbonell E, Imai H, Abadía A, Uemura M, Abadía J, López-Millán AF. Effects of manganese toxicity on the protein profile of tomato ( Solanum lycopersicum ) roots as revealed by two complementary proteomic approaches, two-dimensional electrophoresis and shotgun analysis. J Proteomics 2018; 185:51-63. [DOI: 10.1016/j.jprot.2018.06.016] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 05/11/2018] [Accepted: 06/19/2018] [Indexed: 12/31/2022]
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83
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Juliana P, Singh RP, Singh PK, Poland JA, Bergstrom GC, Huerta-Espino J, Bhavani S, Crossa J, Sorrells ME. Genome-wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2018; 131:1405-1422. [PMID: 29589041 PMCID: PMC6004277 DOI: 10.1007/s00122-018-3086-6] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2017] [Accepted: 03/12/2018] [Indexed: 05/19/2023]
Abstract
KEY MESSAGE Genome-wide association mapping in conjunction with population sequencing map and Ensembl plants was used to identify markers/candidate genes linked to leaf rust, stripe rust and tan spot resistance in wheat. Leaf rust (LR), stripe rust (YR) and tan spot (TS) are some of the important foliar diseases in wheat (Triticum aestivum L.). To identify candidate resistance genes for these diseases in CIMMYT's (International Maize and Wheat Improvement Center) International bread wheat screening nurseries, we used genome-wide association studies (GWAS) in conjunction with information from the population sequencing map and Ensembl plants. Wheat entries were genotyped using genotyping-by-sequencing and phenotyped in replicated trials. Using a mixed linear model, we observed that seedling resistance to LR was associated with 12 markers on chromosomes 1DS, 2AS, 2BL, 3B, 4AL, 6AS and 6AL, and seedling resistance to TS was associated with 14 markers on chromosomes 1AS, 2AL, 2BL, 3AS, 3AL, 3B, 6AS and 6AL. Seedling and adult plant resistance (APR) to YR were associated with several markers at the distal end of chromosome 2AS. In addition, YR APR was also associated with markers on chromosomes 2DL, 3B and 7DS. The potential candidate genes for these diseases included several resistance genes, receptor-like serine/threonine-protein kinases and defense-related enzymes. However, extensive LD in wheat that decays at about 5 × 107 bps, poses a huge challenge for delineating candidate gene intervals and candidates should be further mapped, functionally characterized and validated. We also explored a segment on chromosome 2AS associated with multiple disease resistance and identified seventeen disease resistance linked genes. We conclude that identifying candidate genes linked to significant markers in GWAS is feasible in wheat, thus creating opportunities for accelerating molecular breeding.
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Affiliation(s)
- Philomin Juliana
- Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA
| | - Ravi P Singh
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, Postal 6-641, 06600, Mexico, DF, Mexico
| | - Pawan K Singh
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, Postal 6-641, 06600, Mexico, DF, Mexico
| | - Jesse A Poland
- Wheat Genetics Resource Center, Department of Plant Pathology and Department of Agronomy, Kansas State University, Manhattan, KS, 66506, USA
| | - Gary C Bergstrom
- Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA
| | - Julio Huerta-Espino
- Campo Experimental Valle de México INIFAP, 56230, Chapingo, Edo. de México, Mexico
| | - Sridhar Bhavani
- CIMMYT, ICRAF house, United Nations Avenue, Gigiri, Village Market, Nairobi, 00621, Kenya
| | - Jose Crossa
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, Postal 6-641, 06600, Mexico, DF, Mexico
| | - Mark E Sorrells
- Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
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84
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Shao Z, Li Z, Fu Y, Wen Y, Wei S. Induction of defense responses against Magnaporthe oryzae in rice seedling by a new potential biocontrol agent Streptomyces JD211. J Basic Microbiol 2018; 58:686-697. [PMID: 29901825 DOI: 10.1002/jobm.201800100] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 05/10/2018] [Accepted: 05/21/2018] [Indexed: 11/10/2022]
Abstract
The induced resistance against plant pathogens via biocontrol agents is considered as an eco-friendly and promising strategy. In this study, the induced resistance against Magnaporthe oryzae (M. oryzae) in rice seedling by a new potential biocontrol agent Streptomyces JD211 (JD211) was evaluated. The effects of JD211 on defense-related enzymes activities and defense genes expression were investigated. The biocontrol efficacy of different JD211 concentrations was different, and the treatment of 10 g kg-1 JD211 achieved the highest biocontrol efficacy. Activities of catalase, phenylalanine ammonia-lyase (PAL) and β-1,3-glucanase significantly increased in the presence of JD211. The gene expression level of both PAL and pathogenesis related protein 1 increased when rice seedlings were inoculated with JD211 alone or co-inoculated with M. oryzae, and the expression level of chitinase gene was enhanced by JD211 in the later stage. All results suggested that JD211 could increase the rice resistance by stimulating a series of defense responses, which was the result of induced systemic resistance by JD211. This work will provide a new biocontrol agent against Magnaporthe oryzae in rice seedling.
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Affiliation(s)
- Zhengying Shao
- Nanchang Key Laboratory of Applied Fermentation Technology, Jiangxi Agricultural University, Nanchang, P. R. China
| | - Zhang Li
- Nanchang Key Laboratory of Applied Fermentation Technology, Jiangxi Agricultural University, Nanchang, P. R. China
| | - Yanhui Fu
- Nanchang Key Laboratory of Applied Fermentation Technology, Jiangxi Agricultural University, Nanchang, P. R. China
| | - Yangping Wen
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, P. R. China
| | - Saijin Wei
- Nanchang Key Laboratory of Applied Fermentation Technology, Jiangxi Agricultural University, Nanchang, P. R. China
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85
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Kishi-Kaboshi M, Seo S, Takahashi A, Hirochika H. The MAMP-Responsive MYB Transcription Factors MYB30, MYB55 and MYB110 Activate the HCAA Synthesis Pathway and Enhance Immunity in Rice. PLANT & CELL PHYSIOLOGY 2018; 59:903-915. [PMID: 29562362 DOI: 10.1093/pcp/pcy062] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Accepted: 03/15/2018] [Indexed: 05/28/2023]
Abstract
Phenylpropanoids, including diverse compounds, such as monolignols and hydroxycinnamic acids (HCAAs), are essential for land plants to protect them against abiotic stresses, and create physical and chemical barriers to pathogen infection. However, the control of production of these compounds in response to pathogens has been poorly understood. Previously we showed that a MAMP- (microbe-associated molecular pattern) responsive MAPK (mitogen-activated protein kinase) cascade (MKK4-MPK3/MPK6) comprehensively induced the expression of cinnamate/monolignol synthesis genes in rice cells. Here, we identified three MYB proteins, MYB30, MYB55 and MYB110, which are transcriptionally induced by MAMP treatment, MAPK activation and pathogen inoculation. Induced expression of these MYB genes systematically and specifically induced a large part of the genes encoding enzymes in the cinnamate/monolignol pathway. Furthermore, induced expression of the MYB genes caused accumulation of ferulic acid, one of the HCAAs, and enhanced resistance to both fungal and bacterial pathogens in planta. In conclusion, MYB30, MYB55 and MYB110 are involved in the signal pathway between MAMP perception and cinnamate/monolignol synthesis, and have important roles for plant immunity.
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Affiliation(s)
- Mitsuko Kishi-Kaboshi
- National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Shigemi Seo
- National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Akira Takahashi
- National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
| | - Hirohiko Hirochika
- National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
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86
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Salas-Perez RA, Saski CA, Noorai RE, Srivastava SK, Lawton-Rauh AL, Nichols RL, Roma-Burgos N. RNA-Seq transcriptome analysis of Amaranthus palmeri with differential tolerance to glufosinate herbicide. PLoS One 2018; 13:e0195488. [PMID: 29672568 PMCID: PMC5908165 DOI: 10.1371/journal.pone.0195488] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 03/23/2018] [Indexed: 11/24/2022] Open
Abstract
Amaranthus palmeri (Amaranthaceae) is a noxious weed in several agroecosystems and in some cases seriously threatens the sustainability of crop production in North America. Glyphosate-resistant Amaranthus species are widespread, prompting the use of alternatives to glyphosate such as glufosinate, in conjunction with glufosinate-resistant crop cultivars, to help control glyphosate-resistant weeds. An experiment was conducted to analyze the transcriptome of A. palmeri plants that survived exposure to 0.55 kg ha-1 glufosinate. Since there was no record of glufosinate use at the collection site, survival of plants within the population are likely due to genetic expression that pre-dates selection; in the formal parlance of weed science this is described as natural tolerance. Leaf tissues from glufosinate-treated and non-treated seedlings were harvested 24 h after treatment (HAT) for RNA-Seq analysis. Global gene expression was measured using Illumina DNA sequence reads from non-treated and treated surviving (presumably tolerant, T) and susceptible (S) plants. The same plants were used to determine the mechanisms conferring differential tolerance to glufosinate. The S plants accumulated twice as much ammonia as did the T plants, 24 HAT. The relative copy number of the glufosinate target gene GS2 did not differ between T and S plants, with 1 to 3 GS2 copies in both biotypes. A reference cDNA transcriptome consisting of 72,780 contigs was assembled, with 65,282 sequences putatively annotated. Sequences of GS2 from the transcriptome assembly did not have polymorphisms unique to the tolerant plants. Five hundred sixty-seven genes were differentially expressed between treated T and S plants. Of the upregulated genes in treated T plants, 210 were more highly induced than were the upregulated genes in the treated S plants. Glufosinate-tolerant plants had greater induction of ABC transporter, glutathione S-transferase (GST), NAC transcription factor, nitronate monooxygenase (NMO), chitin elicitor receptor kinase (CERK1), heat shock protein 83, ethylene transcription factor, heat stress transcription factor, NADH-ubiquinone oxidoreductase, ABA 8'-hydroxylase, and cytochrome P450 genes (CYP72A, CYP94A1). Seven candidate genes were selected for validation using quantitative real time-PCR. While GST was upregulated in treated tolerant plants in at least one population, CYP72A219 was consistently highly expressed in all treated tolerant biotypes. These genes are candidates for contributing tolerance to glufosinate. Taken together, these results show that differential induction of stress-protection genes in a population can enable some individuals to survive herbicide application. Elevated expression of detoxification-related genes can get fixed in a population with sustained selection pressure, leading to evolution of resistance. Alternatively, sustained selection pressure could select for mutation(s) in the GS2 gene with the same consequence.
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Affiliation(s)
- Reiofeli A. Salas-Perez
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
| | - Christopher A. Saski
- Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, United States of America
| | - Rooksana E. Noorai
- Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, United States of America
| | - Subodh K. Srivastava
- Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, United States of America
| | - Amy L. Lawton-Rauh
- Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, United States of America
| | | | - Nilda Roma-Burgos
- Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America
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Qureshi N, Bariana HS, Zhang P, McIntosh R, Bansal UK, Wong D, Hayden MJ, Dubcovsky J, Shankar M. Genetic Relationship of Stripe Rust Resistance Genes Yr34 and Yr48 in Wheat and Identification of Linked KASP Markers. PLANT DISEASE 2018; 102:413-420. [PMID: 30673523 DOI: 10.1094/pdis-08-17-1144-re] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The Australian continent was free from wheat stripe rust caused by Puccinia striiformis f. sp. tritici until exotic incursions occurred in 1979 and 2002. The 2002 incursion enabled the identification of a new stripe rust resistance gene (Yr34) in the advanced breeding line WAWHT2046. In this study, we developed and validated markers closely linked with Yr34, which is located in the distal region in the long arm of chromosome 5A. Four kompetitive allele-specific polymerase chain reaction (KASP) and three sequence-tagged site (STS) markers derived from the International Wheat Genome Sequencing Consortium RefSeq v1.0 scaffold-77836 cosegregated with Yr34. Markers sun711, sun712, sun725, sunKASP_109, and sunKASP_112 were shown to be suitable for marker-assisted selection in a validation panel of 71 Australian spring wheat genotypes, with the exception of cultivar Orion that carried the Yr34-linked alleles for sunKASP_109 and sunKASP_112. Markers previously reported to be linked with adult plant stripe rust resistance gene Yr48 also cosegregated with Yr34. Wheat genotypes carrying Yr34 and Yr48 produced identical haplotypes for the Yr34-linked markers identified in this study and those previously reported to be linked with Yr48. Phenotypic testing of genotypes carrying Yr34 and Yr48 showed that both genes conferred similar seedling responses to pre-2002 and post-2002 P. striiformis f. sp. tritici pathotypes. Further testing of 600 F2 plants from a cross between WAWHT2046 and RIL143 (Yr48) with P. striiformis f. sp. tritici pathotype 134 E16A+Yr17+Yr27+ failed to reveal any susceptible segregants. Our results strongly suggest that Yr34 and Yr48 are the same gene, and that Yr48 should be considered a synonym of Yr34.
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Affiliation(s)
- N Qureshi
- The University of Sydney Plant Breeding Institute, Faculty of Science, Cobbitty, NSW 2570, Australia
| | - H S Bariana
- The University of Sydney Plant Breeding Institute, Faculty of Science, Cobbitty, NSW 2570, Australia
| | - P Zhang
- The University of Sydney Plant Breeding Institute, Faculty of Science, Cobbitty, NSW 2570, Australia
| | - R McIntosh
- The University of Sydney Plant Breeding Institute, Faculty of Science, Cobbitty, NSW 2570, Australia
| | - U K Bansal
- The University of Sydney Plant Breeding Institute, Faculty of Science, Cobbitty, NSW 2570, Australia
| | - D Wong
- Department of Economic Development, Jobs, Transport and Resources, AgriBio Centre, La Trobe Research and Development Park, Bundoora, VIC 3083, Australia
| | - M J Hayden
- Department of Economic Development, Jobs, Transport and Resources, AgriBio Centre, La Trobe Research and Development Park, Bundoora, VIC 3083, Australia
| | - J Dubcovsky
- Department of Plant Sciences, University of California, Davis 95616
| | - M Shankar
- Agriculture and Food, Department of Primary Industries and Regional Development, South Perth, WA 6151, Australia; and School of Agriculture and Environment, University of Western Australia, Crawley WA 6009, Australia
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88
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Jain S, Choudhary DK, Sharma KP, Aggarwal R. Bacterial Mediated Plant Protection: Induced Systemic Resistance in Soybean. Microb Biotechnol 2018. [DOI: 10.1007/978-981-10-7140-9_10] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
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89
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Proteomics reveals key proteins participating in growth difference between fall dormant and non-dormant alfalfa in terminal buds. J Proteomics 2017; 173:126-138. [PMID: 29229487 DOI: 10.1016/j.jprot.2017.11.029] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Revised: 11/18/2017] [Accepted: 11/30/2017] [Indexed: 12/14/2022]
Abstract
To explore the molecular mechanism of growth differences between fall dormant (FD) and non-FD alfalfa, we conducted iTRAQ-based quantitative proteomics on terminal buds of Maverick (FD) and Cuf101 (non-FD) cultivars, identified differential abundance protein species (DAPS) and verified expression profiling of certain corresponding mRNA by qRT-PCR. A total of 3872 protein species were annotated. Of the 90 DAPS, 56 and 34 were respectively up- and down-accumulated in Maverick, compared to Cuf101. They were grouped into 35 functional categories and enriched in seven pathways. Of which, auxin polar transport was up-regulated, while phenylpropanoid biosynthesis, pyruvate metabolism and transportation, vitamin B1 synthesis process and flavonoid biosynthesis were down-regulated in Maverick, comparing with Cuf101. In Maverick, mRNA abundances of l-asparaginase, chalcone and stilbene synthase family protein, cinnamyl alcohol dehydrogenase-like protein, thiazole biosynthetic enzyme, pyruvate dehydrogenase E1 beta subunit, and aldo/keto reductase family oxidoreductase were significantly lower at FD than at other stages, and lower than in Cuf101. We also observed opposite mRNA profiles of thiazole biosynthetic enzyme, chalcone and stilbene synthase family protein, pyruvate dehydrogenase E1 beta subunit in both cultivars from summer to autumn. Our results suggest that these DAPS could play important roles in growth difference between FD and non-FD alfalfa. BIOLOGICAL SIGNIFICANCE Up to now, as far as we know, currently the proteins related with the growth differences between FD and non-FD alfalfa cultivars in autumn have not yet been identified in terminal buds. This study identified the protein species expressed in alfalfa terminal buds, selected differentially abundant protein species in terminal buds between Maverick (FD) and Cuf101 (non-FD) cultivars in autumn and identified the important protein species participated in the growth differences. This study lays a foundation for further investigation of the molecular mechanism of the growth differences between FD and non-FD alfalfa and the cultivation of advanced alfalfa cultivars.
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90
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Zehra A, Meena M, Dubey MK, Aamir M, Upadhyay RS. Activation of defense response in tomato against Fusarium wilt disease triggered by Trichoderma harzianum supplemented with exogenous chemical inducers (SA and MeJA). BRAZILIAN JOURNAL OF BOTANY 2017; 40:651-664. [DOI: 10.1007/s40415-017-0382-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
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91
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Wang H, Chen Z, Liu G, Bai C, Qiu H, Jia Y, Luo L. Alterations of growth, antioxidant system and gene expression in Stylosanthes guianensis during Colletotrichum gloeosporioides infection. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 118:256-266. [PMID: 28662462 DOI: 10.1016/j.plaphy.2017.06.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Revised: 06/19/2017] [Accepted: 06/19/2017] [Indexed: 06/07/2023]
Abstract
Anthracnose caused by Colletotrichum gloeosporioides is one of the most destructive fungal diseases of many plants, including stylo (Stylosanthes spp.), which is an important tropical forage legume. Although C. gloeosporioides-caused anthracnose is the major constraint limiting the growth and yield of stylo, little information is available regarding the responses of stylo during the infection process of this pathogen. This study investigated the changes in growth, the antioxidant system and gene expression in stylo in response to C. gloeosporioides treatment. Negative effects of C. gloeosporioides were observed in inoculated stylo plants, as reflected by the formation of necrotic disease lesions and the decrease in shoot fresh weight. Reactive oxygen species (ROS) accumulation increased in stylo leaves during the C. gloeosporioides infection process. The activities of antioxidant enzymes, including superoxide dismutase (SOD), catalase (CAT), peroxidase (POD), glutathione peroxidase (GPX) and glutathione reductase (GR), as well as the concentrations of the antioxidant compounds ascorbate (AsA) and glutathione (GSH), increased in leaves under C. gloeosporioides treatment. Furthermore, transcriptional analysis showed that the expression of stress response genes, including NADPH oxidase (Nox), thioredoxin (Thi), pathogenesis related genes (PR1 and PR5), phenylalanine ammonia lyase (PAL), polyphenol oxidase (PPO), chalcone synthase (CHS) and chitinase (Cht), was differentially enhanced in stylo leaves by C. gloeosporioides. Taken together, this study provides novel information regarding the alterations during the infection process of C. gloeosporioides in stylo at the levels of antioxidant system and gene expression.
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Affiliation(s)
- Hui Wang
- College of Agriculture, Hainan University, Haikou, 570110, PR China
| | - Zhijian Chen
- Institute of Tropical Crop Genetic Resources, Chinese Academy of Tropical Agriculture Sciences, Danzhou, 571737, PR China
| | - Guodao Liu
- Institute of Tropical Crop Genetic Resources, Chinese Academy of Tropical Agriculture Sciences, Danzhou, 571737, PR China
| | - Changjun Bai
- Institute of Tropical Crop Genetic Resources, Chinese Academy of Tropical Agriculture Sciences, Danzhou, 571737, PR China
| | - Hong Qiu
- Institute of Tropical Crop Genetic Resources, Chinese Academy of Tropical Agriculture Sciences, Danzhou, 571737, PR China
| | - Yanxing Jia
- College of Agriculture, Hainan University, Haikou, 570110, PR China
| | - Lijuan Luo
- College of Agriculture, Hainan University, Haikou, 570110, PR China.
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92
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Ren CG, Kong CC, Yan K, Zhang H, Luo YM, Xie ZH. Elucidation of the molecular responses to waterlogging in Sesbania cannabina roots by transcriptome profiling. Sci Rep 2017; 7:9256. [PMID: 28835646 PMCID: PMC5569044 DOI: 10.1038/s41598-017-07740-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 07/04/2017] [Indexed: 01/22/2023] Open
Abstract
Sesbania cannabina, a multipurpose leguminous crop, is highly resistant to waterlogging stress. However, the scant genomic resources in the genus Sesbania have greatly hindered further exploration of the mechanisms underlying its waterlogging tolerance. Here, the genetic basis of flooding tolerance in S. cannabina was examined by transcriptome-wide gene expression changes using RNA-Seq in seedlings exposed to short-term (3 h) and long-term (27 h) waterlogging. After de- novo assembly, 213990 unigenes were identified, of which 145162 (79.6%) were annotated. Gene Ontology and pathway enrichment analyses revealed that the glycolysis and fermentation pathways were stimulated to produce ATP under hypoxic stress conditions. Energy-consuming biosynthetic processes were dramatically repressed by short and long term waterlogging, while amino acid metabolism was greatly induced to maintain ATP levels. The expression pattern of 10 unigenes involved in phenylpropanoid biosynthesis, glycolysis, and amino acid metabolism revealed by qRT-PCR confirmed the RNA-Seq data. The present study is a large-scale assessment of genomic resources of Sesbania and provides guidelines for probing the molecular mechanisms underlying S. cannabina waterlogging tolerance.
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Affiliation(s)
- Cheng-Gang Ren
- Key Laboratory of Biology and Utilization of Biological Resources of Coastal Zone, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Cun-Cui Kong
- Key Laboratory of Biology and Utilization of Biological Resources of Coastal Zone, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Kun Yan
- Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Hua Zhang
- Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Yong-Ming Luo
- Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Zhi-Hong Xie
- Key Laboratory of Biology and Utilization of Biological Resources of Coastal Zone, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China.
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93
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Grasso F, Coppola M, Carbone F, Baldoni L, Alagna F, Perrotta G, Pérez-Pulido AJ, Garonna A, Facella P, Daddiego L, Lopez L, Vitiello A, Rao R, Corrado G. The transcriptional response to the olive fruit fly (Bactrocera oleae) reveals extended differences between tolerant and susceptible olive (Olea europaea L.) varieties. PLoS One 2017; 12:e0183050. [PMID: 28797083 PMCID: PMC5552259 DOI: 10.1371/journal.pone.0183050] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2017] [Accepted: 07/30/2017] [Indexed: 11/23/2022] Open
Abstract
The olive fruit fly Bactrocera oleae (Diptera: Tephritidae) is the most devastating pest of cultivated olive (Olea europaea L.). Intraspecific variation in plant resistance to B. oleae has been described only at phenotypic level. In this work, we used a transcriptomic approach to study the molecular response to the olive fruit fly in two olive cultivars with contrasting level of susceptibility. Using next-generation pyrosequencing, we first generated a catalogue of more than 80,000 sequences expressed in drupes from approximately 700k reads. The assembled sequences were used to develop a microarray layout with over 60,000 olive-specific probes. The differential gene expression analysis between infested (i.e. with II or III instar larvae) and control drupes indicated a significant intraspecific variation between the more tolerant and susceptible cultivar. Around 2500 genes were differentially regulated in infested drupes of the tolerant variety. The GO annotation of the differentially expressed genes implies that the inducible resistance to the olive fruit fly involves a number of biological functions, cellular processes and metabolic pathways, including those with a known role in defence, oxidative stress responses, cellular structure, hormone signalling, and primary and secondary metabolism. The difference in the induced transcriptional changes between the cultivars suggests a strong genetic role in the olive inducible defence, which can ultimately lead to the discovery of factors associated with a higher level of tolerance to B. oleae.
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Affiliation(s)
- Filomena Grasso
- Dipartimento di Agraria, Università degli Studi di Napoli “Federico II”, Portici (NA), Italy
| | - Mariangela Coppola
- Dipartimento di Agraria, Università degli Studi di Napoli “Federico II”, Portici (NA), Italy
| | - Fabrizio Carbone
- Centro di Ricerca per l’Olivicoltura e l’Industria Olearia, Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria (CREA), Rende (CS), Italy
| | - Luciana Baldoni
- Institute of Biosciences and Bioresources (IBBR), CNR, Perugia, Italy
| | - Fiammetta Alagna
- Institute of Biosciences and Bioresources (IBBR), CNR, Perugia, Italy
| | - Gaetano Perrotta
- Trisaia Research Center, Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Rotondella (MT), Italy
| | - Antonio J. Pérez-Pulido
- Departamento Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide, Sevilla, Spain
| | - Antonio Garonna
- Dipartimento di Agraria, Università degli Studi di Napoli “Federico II”, Portici (NA), Italy
| | - Paolo Facella
- Trisaia Research Center, Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Rotondella (MT), Italy
| | - Loretta Daddiego
- Trisaia Research Center, Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Rotondella (MT), Italy
| | - Loredana Lopez
- Trisaia Research Center, Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Rotondella (MT), Italy
| | - Alessia Vitiello
- Dipartimento di Agraria, Università degli Studi di Napoli “Federico II”, Portici (NA), Italy
| | - Rosa Rao
- Dipartimento di Agraria, Università degli Studi di Napoli “Federico II”, Portici (NA), Italy
- * E-mail: (RR); (CG)
| | - Giandomenico Corrado
- Dipartimento di Agraria, Università degli Studi di Napoli “Federico II”, Portici (NA), Italy
- * E-mail: (RR); (CG)
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94
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Barad S, Sela N, Dubey AK, Kumar D, Luria N, Ment D, Cohen S, Schaffer AA, Prusky D. Differential gene expression in tomato fruit and Colletotrichum gloeosporioides during colonization of the RNAi-SlPH tomato line with reduced fruit acidity and higher pH. BMC Genomics 2017; 18:579. [PMID: 28778147 PMCID: PMC5545021 DOI: 10.1186/s12864-017-3961-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Accepted: 07/25/2017] [Indexed: 01/15/2023] Open
Abstract
Background The destructive phytopathogen Colletotrichum gloeosporioides causes anthracnose disease in fruit. During host colonization, it secretes ammonia, which modulates environmental pH and regulates gene expression, contributing to pathogenicity. However, the effect of host pH environment on pathogen colonization has never been evaluated. Development of an isogenic tomato line with reduced expression of the gene for acidity, SlPH (Solyc10g074790.1.1), enabled this analysis. Total RNA from C. gloeosporioides colonizing wild-type (WT) and RNAi–SlPH tomato lines was sequenced and gene-expression patterns were compared. Results C. gloeosporioides inoculation of the RNAi–SlPH line with pH 5.96 compared to the WT line with pH 4.2 showed 30% higher colonization and reduced ammonia accumulation. Large-scale comparative transcriptome analysis of the colonized RNAi–SlPH and WT lines revealed their different mechanisms of colonization-pattern activation: whereas the WT tomato upregulated 13-LOX (lipoxygenase), jasmonic acid and glutamate biosynthesis pathways, it downregulated processes related to chlorogenic acid biosynthesis II, phenylpropanoid biosynthesis and hydroxycinnamic acid tyramine amide biosynthesis; the RNAi–SlPH line upregulated UDP-D-galacturonate biosynthesis I and free phenylpropanoid acid biosynthesis, but mainly downregulated pathways related to sugar metabolism, such as the glyoxylate cycle and L-arabinose degradation II. Comparison of C. gloeosporioides gene expression during colonization of the WT and RNAi–SlPH lines showed that the fungus upregulates ammonia and nitrogen transport and the gamma-aminobutyric acid metabolic process during colonization of the WT, while on the RNAi–SlPH tomato, it mainly upregulates the nitrate metabolic process. Conclusions Modulation of tomato acidity and pH had significant phenotypic effects on C. gloeosporioides development. The fungus showed increased colonization on the neutral RNAi–SlPH fruit, and limited colonization on the WT acidic fruit. The change in environmental pH resulted in different defense responses for the two tomato lines. Interestingly, the WT line showed upregulation of jasmonate pathways and glutamate accumulation, supporting the reduced symptom development and increased ammonia accumulation, as the fungus might utilize glutamate to accumulate ammonia and increase environmental pH for better expression of pathogenicity factors. This was not found in the RNAi–SlPH line which downregulated sugar metabolism and upregulated the phenylpropanoid pathway, leading to host susceptibility. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3961-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Shiri Barad
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel.,Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, 76100, Rehovot, Israel
| | - Noa Sela
- Department of Plant Pathology and Weed Research, ARO, the Volcani Center, 50250, Bet Dagan, Israel
| | - Amit K Dubey
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Dilip Kumar
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Neta Luria
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Dana Ment
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Shahar Cohen
- Department of Plant Sciences, Agricultural Research Organization, the Volcani Center, 50250, Bet Dagan, Israel
| | - Arthur A Schaffer
- Department of Plant Sciences, Agricultural Research Organization, the Volcani Center, 50250, Bet Dagan, Israel
| | - Dov Prusky
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel.
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95
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Qin Y, Wei H, Sun H, Hao P, Wang H, Su J, Yu S. Proteomic Analysis of Differences in Fiber Development between Wild and Cultivated Gossypium hirsutum L. J Proteome Res 2017; 16:2811-2824. [PMID: 28683551 DOI: 10.1021/acs.jproteome.7b00122] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Upland cotton (Gossypium hirsutum L.) is one of the world's most important fiber crops, accounting for more than 90% of all cotton production. While their wild progenitors have relatively short and coarse, often tan-colored fibers, modern cotton cultivars possess longer, finer, stronger, and whiter fiber. In this study, the wild and cultivated cottons (YU-3 and TM-1) selected show significant differences on fibers at 10 days postanthesis (DPA), 20 DPA, and mature stages at the morphological level. To explore the effects of domestication, reveal molecular mechanisms underlying these phenotypic differences, and better inform our efforts to further enhance cotton fiber quality, isobaric tags for relative and absolute protein quantification-facilitated proteomic methods were performed on developing fibers. There were 6990 proteins identified; among them, 336 were defined as differentially expressed proteins between fibers of wild versus domesticated cotton. The down- or up-regulated proteins in wild cotton were involved in phenylpropanoid biosynthesis, zeatin biosynthesis, fatty acid elongation, and other processes. Association analysis between transcriptome and proteome showed positive correlations between transcripts and proteins at both 10 DPA and 20 DPA. Differences in proteomics have been verified at the mRNA level by quantitative real-time polymerase chain reaction and have been validated at the physiological and biochemical levels by POD (peroxidase) activity assays and ZA (zeatin) content estimates. This work corroborates the major pathways involved in cotton fiber development and demonstrates that POD activity and zeatin content have a great potential related to fiber elongation and thickening.
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Affiliation(s)
- Yuan Qin
- College of Agronomy, Northwest A&F University , No. 3 Taicheng Road, Yangling, Shaanxi 712100, China.,State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
| | - Hengling Wei
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
| | - Huiru Sun
- College of Agronomy, Northwest A&F University , No. 3 Taicheng Road, Yangling, Shaanxi 712100, China.,State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
| | - Pengbo Hao
- College of Agronomy, Northwest A&F University , No. 3 Taicheng Road, Yangling, Shaanxi 712100, China.,State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
| | - Hantao Wang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
| | - Junji Su
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
| | - Shuxun Yu
- College of Agronomy, Northwest A&F University , No. 3 Taicheng Road, Yangling, Shaanxi 712100, China.,State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences , No. 38 Huanghe Road, Anyang, Henan 455000, China
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96
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Baruah IK, Panda D, M.V J, Das DJ, Acharjee S, Sen P, Sarmah BK. Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo). PLoS One 2017; 12:e0176337. [PMID: 28448540 PMCID: PMC5407641 DOI: 10.1371/journal.pone.0176337] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2016] [Accepted: 04/10/2017] [Indexed: 11/18/2022] Open
Abstract
Black gram (Vigna mungo) seeds are a rich source of digestible proteins, however, during storage these seeds are severely damaged by bruchids (Callosobruchus spp.), reducing seed quality and yield losses. Most of the cultivated genotypes of black gram are susceptible to bruchids, however, few tolerant genotypes have also been identified but the mechanism of tolerance is poorly understood. We employed Suppression Subtractive Hybridization (SSH) to identify specifically, but rarely expressed bruchid egg induced genes in black gram. In this study, Suppression Subtractive Hybridization (SSH) library was constructed to study the genes involved in defense response in black gram against bruchid infestation. An EST library of 277 clones was obtained for further analyses. Based on CAP3 assembly, 134 unigenes were computationally annotated using Blast2GOPRO software. In all, 20 defense related genes were subject to quantitative PCR analysis (qPCR) out of which 12 genes showed up-regulation in developing seeds of the pods oviposited by bruchids. Few major defense genes like defensin, pathogenesis related protein (PR), lipoxygenase (LOX) showed high expression levels in the oviposited population when compared with the non-oviposited plants. This is the first report on defense related gene transcript dynamics during the bruchid-black gram interaction using SSH library. This library would be useful to clone defense related gene(s) such as defensin as represented in our library for crop improvement.
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Affiliation(s)
| | - Debashis Panda
- Distributed Information Centre, Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
| | - Jagadale M.V
- DBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India
| | - Deba Jit Das
- DBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India
| | - Sumita Acharjee
- DBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India
- Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
- * E-mail: (BKS); (SA)
| | - Priyabrata Sen
- Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
| | - Bidyut Kumar Sarmah
- DBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India
- * E-mail: (BKS); (SA)
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97
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Singh R, Parihar P, Singh M, Bajguz A, Kumar J, Singh S, Singh VP, Prasad SM. Uncovering Potential Applications of Cyanobacteria and Algal Metabolites in Biology, Agriculture and Medicine: Current Status and Future Prospects. Front Microbiol 2017; 8:515. [PMID: 28487674 PMCID: PMC5403934 DOI: 10.3389/fmicb.2017.00515] [Citation(s) in RCA: 139] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 03/13/2017] [Indexed: 12/05/2022] Open
Abstract
Cyanobacteria and algae having complex photosynthetic systems can channelize absorbed solar energy into other forms of energy for production of food and metabolites. In addition, they are promising biocatalysts and can be used in the field of "white biotechnology" for enhancing the sustainable production of food, metabolites, and green energy sources such as biodiesel. In this review, an endeavor has been made to uncover the significance of various metabolites like phenolics, phytoene/terpenoids, phytols, sterols, free fatty acids, photoprotective compounds (MAAs, scytonemin, carotenoids, polysaccharides, halogenated compounds, etc.), phytohormones, cyanotoxins, biocides (algaecides, herbicides, and insecticides) etc. Apart from this, the importance of these metabolites as antibiotics, immunosuppressant, anticancer, antiviral, anti-inflammatory agent has also been discussed. Metabolites obtained from cyanobacteria and algae have several biotechnological, industrial, pharmaceutical, and cosmetic uses which have also been discussed in this review along with the emerging technology of their harvesting for enhancing the production of compounds like bioethanol, biofuel etc. at commercial level. In later sections, we have discussed genetically modified organisms and metabolite production from them. We have also briefly discussed the concept of bioprocessing highlighting the functioning of companies engaged in metabolites production as well as their cost effectiveness and challenges that are being addressed by these companies.
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Affiliation(s)
- Rachana Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Parul Parihar
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Madhulika Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Andrzej Bajguz
- Faculty of Biology and Chemistry, Institute of Biology, University of BialystokBialystok, Poland
| | - Jitendra Kumar
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Samiksha Singh
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
| | - Vijay P. Singh
- Department of Botany, Govt. Ramanuj Pratap Singhdev Post-Graduate CollegeBaikunthpur, Koriya, India
| | - Sheo M. Prasad
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of AllahabadAllahabad, India
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98
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Wang H, Lin J, Chang Y, Jiang CZ. Comparative Transcriptomic Analysis Reveals That Ethylene/H 2O 2-Mediated Hypersensitive Response and Programmed Cell Death Determine the Compatible Interaction of Sand Pear and Alternaria alternata. FRONTIERS IN PLANT SCIENCE 2017; 8:195. [PMID: 28261248 PMCID: PMC5309250 DOI: 10.3389/fpls.2017.00195] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Accepted: 01/31/2017] [Indexed: 05/23/2023]
Abstract
A major restriction on sand pear (Pyrus pyrifolia) production is black spot disease caused by the necrotrophic fungus Alternaria alternata. However, the pear response mechanism to A. alternata is unknown at the molecular level. Here, host responses of a resistant cultivar Cuiguan (CG) and a susceptible cultivar Sucui1 (SC1) to A. alternata infection were investigated. We found that the primary necrotic lesion formed at 1 dpi and the expansion of lesions was aggressive in SC1. Data from transcriptomic profiles using RNA-Seq technology identified a large number of differentially expressed genes (DEGs) between CG and SC1 in the early phase of A. alternata infection. K-mean cluster and Mapman analysis revealed that genes involved in ethylene (ET) biosynthesis and ET signaling pathway, such as ACS, ACOs, and ERFs, and in hypersensitive response (HR) and programmed cell death (PCD) were significantly enriched and up-regulated in the susceptible cultivar SC1. Conversely, genes involved in response to hydrogen peroxide and superoxide were differentially up-regulated in the resistant cultivar CG after inoculation with the fungus. Furthermore, ET levels were highly accumulated in SC1, but not in CG. Higher activities of detoxifying enzymes such as catalases were detected in CG. Our results demonstrate that the ET-/H2O2-mediated PCD and detoxifying processes play a vital role in the interaction of pear and A. alternata.
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Affiliation(s)
- Hong Wang
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/Jiangsu Key Laboratory for Horticultural Crop Genetic ImprovementNanjing, China
| | - Jing Lin
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/Jiangsu Key Laboratory for Horticultural Crop Genetic ImprovementNanjing, China
| | - Youhong Chang
- Institute of Horticulture, Jiangsu Academy of Agricultural Sciences/Jiangsu Key Laboratory for Horticultural Crop Genetic ImprovementNanjing, China
| | - Cai-Zhong Jiang
- Department of Plant Sciences, University of California at DavisDavis, CA, USA
- Crops Pathology and Genetics Research Unit, United States Department of Agriculture, Agricultural Research ServiceDavis, CA, USA
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99
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Sun X, Wang Z, Gu Q, Li H, Han W, Shi Y. Transcriptome analysis of Cucumis sativus infected by Cucurbit chlorotic yellows virus. Virol J 2017; 14:18. [PMID: 28148297 PMCID: PMC5288851 DOI: 10.1186/s12985-017-0690-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Accepted: 01/18/2017] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND Cucurbit chlorotic yellows virus (CCYV) is a recently reported bipartite crinivirus that causes chlorotic leaf spots and yellowing symptoms on the leaves of cucurbit plants. The virus-host interaction of CCYV remains to be elucidated, and the influence of criniviruses on the host gene transcriptome requires analysis. METHODS We used transcriptome sequencing to analyse the differentially expressed genes (DEGs) caused by CCYV infection. RESULTS CCYV infection resulted in 865 DEGs. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis identified 67 pathways, and the three major enrichment pathways (according to the P-values) were photosynthesis-antenna proteins (KO00196), phenylalanine metabolism (KO00360a), and phenylpropanoid biosynthesis (KO00940). Of the 13 DEGs identified in phenylalanine metabolism, 11 genes encode disease resistance-related phenylalanine ammonia-lyase (PAL) genes. Using quantitative real-time PCR, we validated the differential expression of 12 genes. CONCLUSIONS Our study based on the CCYV-cucumber interaction provides comprehensive transcriptomic information, and will improve our understanding of host-crinivirus interactions.
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Affiliation(s)
- Xinyan Sun
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China
| | - Zhenyue Wang
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China
| | - Qinsheng Gu
- Zhengzhou Fruit Research Institute, Chinese Academy of Agriculture Sciences, Zhengzhou, 450009, China
| | - Honglian Li
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China
| | - Weili Han
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yan Shi
- College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
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100
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Gorni PH, Brozulato MDO, Lourenção RDS, Konrad ECG. Increased biomass and salicylic acid elicitor activity in fennel (Foeniculum vulgare Miller). BRAZILIAN JOURNAL OF FOOD TECHNOLOGY 2017. [DOI: 10.1590/1981-6723.17216] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Abstract Fennel is a medicinal and aromatic plant that is commonly used in Brazilian cuisine and in the manufacture of cosmetics. The exogenous application of salicylic acid (SA) can act on the hormonal action stimulating plant growth and development and the induction of plant defense responses under stressful conditions. The objective of this study was to determine the effect of the foliar application of SA on the production of biomass and synthesis of secondary compounds in fennel plants. For this purpose, an experiment was carried out in potted plants in a greenhouse with the application of SA at concentrations of 0, 0.25, 0.50 and 1.00 mM, 20 days and 90 days after transplanting the seedlings to the pots. The effect of SA on the metabolism of the fennel plants was evaluated using growth and biochemical parameters. The exogenous application of SA increased the plant shoots dry weight at the concentration of 0.50 mM, whereas an improved dry root mass and root/shoot ratio was achieved with the concentration of 0.25 mM. The elicitor effect was observed at 0.25 mM of SA, resulting in greater economic value of the biomass due to the higher production of secondary compounds, such as phenolic compounds and flavonoids. In addition, an increase in antioxidant activity of the plant extracts and of the essential oil content of the species was obtained at the concentration of 1.00 mM.
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