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Li S, Zhang C, Li J, Yan L, Wang N, Xia L. Present and future prospects for wheat improvement through genome editing and advanced technologies. PLANT COMMUNICATIONS 2021; 2:100211. [PMID: 34327324 PMCID: PMC8299080 DOI: 10.1016/j.xplc.2021.100211] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 05/15/2021] [Accepted: 06/03/2021] [Indexed: 05/03/2023]
Abstract
Wheat (Triticum aestivum, 2n = 6x = 42, AABBDD) is one of the most important staple food crops in the world. Despite the fact that wheat production has significantly increased over the past decades, future wheat production will face unprecedented challenges from global climate change, increasing world population, and water shortages in arid and semi-arid lands. Furthermore, excessive applications of diverse fertilizers and pesticides are exacerbating environmental pollution and ecological deterioration. To ensure global food and ecosystem security, it is essential to enhance the resilience of wheat production while minimizing environmental pollution through the use of cutting-edge technologies. However, the hexaploid genome and gene redundancy complicate advances in genetic research and precision gene modifications for wheat improvement, thus impeding the breeding of elite wheat cultivars. In this review, we first introduce state-of-the-art genome-editing technologies in crop plants, especially wheat, for both functional genomics and genetic improvement. We then outline applications of other technologies, such as GWAS, high-throughput genotyping and phenotyping, speed breeding, and synthetic biology, in wheat. Finally, we discuss existing challenges in wheat genome editing and future prospects for precision gene modifications using advanced genome-editing technologies. We conclude that the combination of genome editing and other molecular breeding strategies will greatly facilitate genetic improvement of wheat for sustainable global production.
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Affiliation(s)
- Shaoya Li
- Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
| | - Chen Zhang
- Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
| | - Jingying Li
- Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
| | - Lei Yan
- Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
| | - Ning Wang
- Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
| | - Lanqin Xia
- Institute of Crop Sciences (ICS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China
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Amelioration of Chlorpyrifos-Induced Toxicity in Brassica juncea L. by Combination of 24-Epibrassinolide and Plant-Growth-Promoting Rhizobacteria. Biomolecules 2021; 11:biom11060877. [PMID: 34204730 PMCID: PMC8231531 DOI: 10.3390/biom11060877] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 06/07/2021] [Accepted: 06/08/2021] [Indexed: 01/24/2023] Open
Abstract
Pervasive use of chlorpyrifos (CP), an organophosphorus pesticide, has been proven to be fatal for plant growth, especially at higher concentrations. CP poisoning leads to growth inhibition, chlorosis, browning of roots and lipid and protein degradation, along with membrane dysfunction and nuclear damage. Plants form a linking bridge between the underground and above-ground communities to escape from the unfavourable conditions. Association with beneficial rhizobacteria promotes the growth and development of the plants. Plant hormones are crucial regulators of basically every aspect of plant development. The growing significance of plant hormones in mediating plant-microbe interactions in stress recovery in plants has been extensively highlighted. Hence, the goal of the current study was to investigate the effect of 24-epibrassinolide (EBL) and PGPRs (Pseudomonas aeruginosa (Ma), Burkholderia gladioli (Mb)) on growth and the antioxidative defence system of CP-stressed Brassica juncea L. seedlings. CP toxicity reduced the germination potential, hypocotyl and radicle development and vigour index, which was maximally recuperated after priming with EBL and Mb. CP-exposed seedlings showed higher levels of superoxide anion (O2-), hydrogen peroxide (H2O2), lipid peroxidation and electrolyte leakage (EL) and a lower level of nitric oxide (NO). In-vivo visualisation of CP-stressed seedlings using a light and fluorescent microscope also revealed the increase in O2-, H2O2 and lipid peroxidation, and decreased NO levels. The combination of EBL and PGPRs reduced the reactive oxygen species (ROS) and malondialdehyde (MDA) contents and improved the NO level. In CP-stressed seedlings, increased gene expression of defence enzymes such as superoxide dismutase (SOD), ascorbate peroxidase (APOX), glutathione peroxidase (GPOX), dehydroascorbate reductase (DHAR) and glutathione reductase (GPOX) was seen, with the exception of catalase (CAT) on supplementation with EBL and PGPRs. The activity of nitrate reductase (NR) was likewise shown to increase after treatment with EBL and PGPRs. The results obtained from the present study substantiate sufficient evidence regarding the positive association of EBL and PGPRs in amelioration of CP-induced oxidative stress in Brassica juncea seedlings by strengthening the antioxidative defence machinery.
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Ahmar S, Mahmood T, Fiaz S, Mora-Poblete F, Shafique MS, Chattha MS, Jung KH. Advantage of Nanotechnology-Based Genome Editing System and Its Application in Crop Improvement. FRONTIERS IN PLANT SCIENCE 2021; 12:663849. [PMID: 34122485 PMCID: PMC8194497 DOI: 10.3389/fpls.2021.663849] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 04/26/2021] [Indexed: 05/05/2023]
Abstract
Agriculture is an important source of human food. However, current agricultural practices need modernizing and strengthening to fulfill the increasing food requirements of the growing worldwide population. Genome editing (GE) technology has been used to produce plants with improved yields and nutritional value as well as with higher resilience to herbicides, insects, and diseases. Several GE tools have been developed recently, including clustered regularly interspaced short palindromic repeats (CRISPR) with nucleases, a customizable and successful method. The main steps of the GE process involve introducing transgenes or CRISPR into plants via specific gene delivery systems. However, GE tools have certain limitations, including time-consuming and complicated protocols, potential tissue damage, DNA incorporation in the host genome, and low transformation efficiency. To overcome these issues, nanotechnology has emerged as a groundbreaking and modern technique. Nanoparticle-mediated gene delivery is superior to conventional biomolecular approaches because it enhances the transformation efficiency for both temporal (transient) and permanent (stable) genetic modifications in various plant species. However, with the discoveries of various advanced technologies, certain challenges in developing a short-term breeding strategy in plants remain. Thus, in this review, nanobased delivery systems and plant genetic engineering challenges are discussed in detail. Moreover, we have suggested an effective method to hasten crop improvement programs by combining current technologies, such as speed breeding and CRISPR/Cas, with nanotechnology. The overall aim of this review is to provide a detailed overview of nanotechnology-based CRISPR techniques for plant transformation and suggest applications for possible crop enhancement.
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Affiliation(s)
- Sunny Ahmar
- Institute of Biological Sciences, Universidad de Talca, Talca, Chile
| | - Tahir Mahmood
- Chinese Academy of Agricultural Sciences, Beijing, China
| | - Sajid Fiaz
- Department of Plant Breeding and Genetics, The University of Haripur, Haripur, Pakistan
| | | | | | | | - Ki-Hung Jung
- Graduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, South Korea
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Damerum A, Smith HK, Clarkson G, Truco MJ, Michelmore RW, Taylor G. The genetic basis of water-use efficiency and yield in lettuce. BMC PLANT BIOLOGY 2021; 21:237. [PMID: 34044761 PMCID: PMC8157645 DOI: 10.1186/s12870-021-02987-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 04/26/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Water supply limits agricultural productivity of many crops including lettuce. Identifying cultivars within crop species that can maintain productivity with reduced water supply is a significant challenge, but central to developing resilient crops for future water-limited climates. We investigated traits known to be related to water-use efficiency (WUE) and yield in lettuce, a globally important leafy salad crop, in a recombinant inbred line (RIL) lettuce mapping population, produced from a cross between the cultivated Lactuca sativa L. cv. Salinas and its wild progenitor L. serriola L. RESULTS Wild and cultivated lettuce differed in their WUE and we observed transgressive segregation in yield and water-use traits in the RILs. Quantitative trait loci (QTL) analysis identified genomic regions controlling these traits under well-watered and droughted conditions. QTL were detected for carbon isotope discrimination, transpiration, stomatal conductance, leaf temperature and yield, controlling 4-23 % of the phenotypic variation. A QTL hotspot was identified on chromosome 8 that controlled carbon isotope discrimination, stomatal conductance and yield under drought. Several promising candidate genes in this region were associated with WUE, including aquaporins, late embryogenesis abundant proteins, an abscisic acid-responsive element binding protein and glutathione S-transferases involved in redox homeostasis following drought stress were also identified. CONCLUSIONS For the first time, we have characterised the genetic basis of WUE of lettuce, a commercially important and water demanding crop. We have identified promising candidate genomic regions determining WUE and yield under well-watered and water-limiting conditions, providing important pre-breeding data for future lettuce selection and breeding where water productivity will be a key target.
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Affiliation(s)
- Annabelle Damerum
- Department of Plant Sciences, University of California, Davis, 95616, CA, USA
| | - Hazel K Smith
- School of Biological Sciences, University of Southampton, Hampshire, SO17 1BJ, UK
- Present address: Vitacress Salads, Lower Link Farm, St Mary Bourne, SP11 6DB, Hampshire, UK
| | - Gjj Clarkson
- Present address: Vitacress Salads, Lower Link Farm, St Mary Bourne, SP11 6DB, Hampshire, UK
| | - Maria José Truco
- The Genome Centre, University of California, Davis, 95616, CA, USA
| | | | - Gail Taylor
- Department of Plant Sciences, University of California, Davis, 95616, CA, USA.
- School of Biological Sciences, University of Southampton, Hampshire, SO17 1BJ, UK.
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Sun S, Hu C, Qi X, Chen J, Zhong Y, Muhammad A, Lin M, Fang J. The AaCBF4-AaBAM3.1 module enhances freezing tolerance of kiwifruit (Actinidia arguta). HORTICULTURE RESEARCH 2021; 8:97. [PMID: 33931620 PMCID: PMC8087828 DOI: 10.1038/s41438-021-00530-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 01/20/2021] [Accepted: 02/24/2021] [Indexed: 05/20/2023]
Abstract
Beta-amylase (BAM) plays an important role in plant resistance to cold stress. However, the specific role of the BAM gene in freezing tolerance is poorly understood. In this study, we demonstrated that a cold-responsive gene module was involved in the freezing tolerance of kiwifruit. In this module, the expression of AaBAM3.1, which encodes a functional protein, was induced by cold stress. AaBAM3.1-overexpressing kiwifruit lines showed increased freezing tolerance, and the heterologous overexpression of AaBAM3.1 in Arabidopsis thaliana resulted in a similar phenotype. The results of promoter GUS activity and cis-element analyses predicted AaCBF4 to be an upstream transcription factor that could regulate AaBAM3.1 expression. Further investigation of protein-DNA interactions by using yeast one-hybrid, GUS coexpression, and dual luciferase reporter assays confirmed that AaCBF4 directly regulated AaBAM3.1 expression. In addition, the expression of both AaBAM3.1 and AaCBF4 in kiwifruit responded positively to cold stress. Hence, we conclude that the AaCBF-AaBAM module is involved in the positive regulation of the freezing tolerance of kiwifruit.
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Affiliation(s)
- Shihang Sun
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China
| | - Chungen Hu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, 430070, China
| | - Xiujuan Qi
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Jinyong Chen
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Yunpeng Zhong
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Abid Muhammad
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Miaomiao Lin
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China.
| | - Jinbao Fang
- Key Laboratory for Fruit Tree Growth, Development and Quality Control, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China.
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Perdomo JA, Buchner P, Carmo-Silva E. The relative abundance of wheat Rubisco activase isoforms is post-transcriptionally regulated. PHOTOSYNTHESIS RESEARCH 2021; 148:47-56. [PMID: 33796933 PMCID: PMC8154801 DOI: 10.1007/s11120-021-00830-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Accepted: 03/11/2021] [Indexed: 06/06/2023]
Abstract
Diurnal rhythms and light availability affect transcription-translation feedback loops that regulate the synthesis of photosynthetic proteins. The CO2-fixing enzyme Rubisco is the most abundant protein in the leaves of major crop species and its activity depends on interaction with the molecular chaperone Rubisco activase (Rca). In Triticum aestivum L. (wheat), three Rca isoforms are present that differ in their regulatory properties. Here, we tested the hypothesis that the relative abundance of the redox-sensitive and redox-insensitive Rca isoforms could be differentially regulated throughout light-dark diel cycle in wheat. While TaRca1-β expression was consistently negligible throughout the day, transcript levels of both TaRca2-β and TaRca2-α were higher and increased at the start of the day, with peak levels occurring at the middle of the photoperiod. Abundance of TaRca-β protein was maximal 1.5 h after the peak in TaRca2-β expression, but the abundance of TaRca-α remained constant during the entire photoperiod. The redox-sensitive TaRca-α isoform was less abundant, representing 85% of the redox-insensitive TaRca-β at the transcript level and 12.5% at the protein level. Expression of Rubisco large and small subunit genes did not show a consistent pattern throughout the diel cycle, but the abundance of Rubisco decreased by up to 20% during the dark period in fully expanded wheat leaves. These results, combined with a lack of correlation between transcript and protein abundance for both Rca isoforms and Rubisco throughout the entire diel cycle, suggest that the abundance of these photosynthetic enzymes is post-transcriptionally regulated.
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Affiliation(s)
| | - Peter Buchner
- Plant Biology and Crop Science Department, Rothamsted Research, Harpenden, AL5 2JQ, UK
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Ruiz-Torres N, Flores-Naveda A, Barriga-Castro ED, Camposeco-Montejo N, Ramírez-Barrón S, Borrego-Escalante F, Niño-Medina G, Hernández-Juárez A, Garza-Alonso C, Rodríguez-Salinas P, García-López JI. Zinc Oxide Nanoparticles and Zinc Sulfate Impact Physiological Parameters and Boosts Lipid Peroxidation in Soil Grown Coriander Plants ( Coriandrum sativum). Molecules 2021; 26:1998. [PMID: 33916062 PMCID: PMC8037768 DOI: 10.3390/molecules26071998] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 03/22/2021] [Accepted: 03/29/2021] [Indexed: 01/31/2023] Open
Abstract
The objective of this study was to determine the oxidative stress and the physiological and antioxidant responses of coriander plants (Coriandrum sativum) grown for 58 days in soil with zinc oxide nanoparticles (ZnO NPs) and zinc sulfate (ZnSO4) at concentrations of 0, 100, 200, 300, and 400 mg of Zn/kg of soil. The results revealed that all Zn compounds increased the total chlorophyll content (CHLt) by at least 45%, compared to the control group; however, with 400 mg/kg of ZnSO4, chlorophyll accumulation decreased by 34.6%. Zn determination by induction-plasma-coupled atomic emission spectrometry (ICP-AES) showed that Zn absorption in roots and shoots occurred in plants exposed to ZnSO4 at all concentrations, which resulted in high levels of hydrogen peroxide (H2O2) and malondialdehyde (MDA). Only at 400 mg/kg of ZnSO4, a 78.6% decrease in the MDA levels was observed. According to the results, the ZnSO4 treatments were more effective than the ZnO NPs to increase the antioxidant activity of catalase (CAT), ascorbate peroxidase (APX), and peroxidases (POD). The results corroborate that phytotoxicity was higher in plants subjected to ZnSO4 compared to treatments with ZnO NPs, which suggests that the toxicity was due to Zn accumulation in the tissues by absorbing dissolved Zn++ ions.
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Affiliation(s)
- Norma Ruiz-Torres
- Centro de Capacitación y Desarrollo en Tecnología de Semillas, Departamento de Fitomejoramiento, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (N.R.-T.); (A.F.-N.); (N.C.-M.); (F.B.-E.)
| | - Antonio Flores-Naveda
- Centro de Capacitación y Desarrollo en Tecnología de Semillas, Departamento de Fitomejoramiento, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (N.R.-T.); (A.F.-N.); (N.C.-M.); (F.B.-E.)
| | - Enrique Díaz Barriga-Castro
- Centro de Investigación en Química Aplicada, Blvd. Enrique Reyna Hermosillo, Saltillo C.P. 25294, Coahuila, Mexico;
| | - Neymar Camposeco-Montejo
- Centro de Capacitación y Desarrollo en Tecnología de Semillas, Departamento de Fitomejoramiento, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (N.R.-T.); (A.F.-N.); (N.C.-M.); (F.B.-E.)
| | - Sonia Ramírez-Barrón
- Departamento de Parasitología y Ciencias Básicas, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (S.R.-B.); (A.H.-J.)
| | - Fernando Borrego-Escalante
- Centro de Capacitación y Desarrollo en Tecnología de Semillas, Departamento de Fitomejoramiento, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (N.R.-T.); (A.F.-N.); (N.C.-M.); (F.B.-E.)
| | - Guillermo Niño-Medina
- Facultad de Agronomía, Universidad Autónoma de Nuevo León, Francisco Villa S/N, Col. Ex-Hacienda el Canada, General Escobedo C.P. 66050, Nuevo León, Mexico; (G.N.-M.); (C.G.-A.)
| | - Agustín Hernández-Juárez
- Departamento de Parasitología y Ciencias Básicas, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (S.R.-B.); (A.H.-J.)
| | - Carlos Garza-Alonso
- Facultad de Agronomía, Universidad Autónoma de Nuevo León, Francisco Villa S/N, Col. Ex-Hacienda el Canada, General Escobedo C.P. 66050, Nuevo León, Mexico; (G.N.-M.); (C.G.-A.)
| | - Pablo Rodríguez-Salinas
- Departamento en Ciencias Biológicas, Facultad de Ciencias Naturales, Universidad Autónoma de Querétaro, Avenida de las Ciencias S/N, Juriquilla, Querétaro C.P. 76230, Juriquilla, Mexico;
| | - Josué I. García-López
- Centro de Capacitación y Desarrollo en Tecnología de Semillas, Departamento de Fitomejoramiento, Universidad Autónoma Agraria Antonio Narro, Saltillo C.P. 25315, Coahuila, Mexico; (N.R.-T.); (A.F.-N.); (N.C.-M.); (F.B.-E.)
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Gutiérrez-García L, Arró M, Altabella T, Ferrer A, Boronat A. Structural and functional analysis of tomato sterol C22 desaturase. BMC PLANT BIOLOGY 2021; 21:141. [PMID: 33731007 PMCID: PMC7972189 DOI: 10.1186/s12870-021-02898-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 02/21/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Sterols are structural and functional components of eukaryotic cell membranes. Plants produce a complex mixture of sterols, among which β-sitosterol, stigmasterol, campesterol, and cholesterol in some Solanaceae, are the most abundant species. Many reports have shown that the stigmasterol to β-sitosterol ratio changes during plant development and in response to stresses, suggesting that it may play a role in the regulation of these processes. In tomato (Solanum lycopersicum), changes in the stigmasterol to β-sitosterol ratio correlate with the induction of the only gene encoding sterol C22-desaturase (C22DES), the enzyme specifically involved in the conversion of β-sitosterol to stigmasterol. However, despite the biological interest of this enzyme, there is still a lack of knowledge about several relevant aspects related to its structure and function. RESULTS In this study we report the subcellular localization of tomato C22DES in the endoplasmic reticulum (ER) based on confocal fluorescence microscopy and cell fractionation analyses. Modeling studies have also revealed that C22DES consists of two well-differentiated domains: a single N-terminal transmembrane-helix domain (TMH) anchored in the ER-membrane and a globular (or catalytic) domain that is oriented towards the cytosol. Although TMH is sufficient for the targeting and retention of the enzyme in the ER, the globular domain may also interact and be retained in the ER in the absence of the N-terminal transmembrane domain. The observation that a truncated version of C22DES lacking the TMH is enzymatically inactive revealed that the N-terminal membrane domain is essential for enzyme activity. The in silico analysis of the TMH region of plant C22DES revealed several structural features that could be involved in substrate recognition and binding. CONCLUSIONS Overall, this study contributes to expand the current knowledge on the structure and function of plant C22DES and to unveil novel aspects related to plant sterol metabolism.
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Affiliation(s)
- Laura Gutiérrez-García
- Center for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB), Bellaterra, Barcelona, Spain
| | - Montserrat Arró
- Center for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB), Bellaterra, Barcelona, Spain
- Department of Biochemistry and Physiology, Faculty of Pharmacy and Food Sciences, University of Barcelona, 08028, Barcelona, Spain
| | - Teresa Altabella
- Center for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB), Bellaterra, Barcelona, Spain
- Department of Biology, Healthcare and the Environment, Faculty of Pharmacy and Food Sciences, University of Barcelona, 08028, Barcelona, Spain
| | - Albert Ferrer
- Center for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB), Bellaterra, Barcelona, Spain
- Department of Biochemistry and Physiology, Faculty of Pharmacy and Food Sciences, University of Barcelona, 08028, Barcelona, Spain
| | - Albert Boronat
- Center for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB), Bellaterra, Barcelona, Spain.
- Department of Biochemistry and Molecular Biomedicine, Faculty of Biology, University of Barcelona, 08028, Barcelona, Spain.
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Han Y, Broughton S, Liu L, Zhang XQ, Zeng J, He X, Li C. Highly efficient and genotype-independent barley gene editing based on anther culture. PLANT COMMUNICATIONS 2021; 2:100082. [PMID: 33898972 PMCID: PMC8060703 DOI: 10.1016/j.xplc.2020.100082] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 05/14/2020] [Accepted: 06/03/2020] [Indexed: 05/05/2023]
Abstract
Recalcitrance to tissue culture and genetic transformation is the major bottleneck for gene manipulation in crops. In barley, immature embryos of Golden Promise have typically been used as explants for transformation. However, the genotype dependence of this approach limits the genetic modification of commercial varieties. Here, we developed an anther culture-based system that permits the effective creation of transgenic and gene-edited plants from commercial barley varieties. The protocol was tested in Golden Promise and four Australian varieties, which differed in phenology, callus induction, and green plant regeneration responses. Agrobacterium-mediated transformation was performed on microspore-derived callus to target the HvPDS gene, and T0 albinos with targeted mutations were successfully obtained from commercial varieties. Further editing of three targets was achieved with an average mutation rate of 53% in the five varieties. In 51 analyzed T0 individuals, Cas9 induced a large proportion (69%) of single-base indels and two-base deletions in the target sites, with variable mutation rates among targets and varieties. Both on-target and off-target activities were detected in T1 progenies. Compared with immature embryo protocols, this genotype-independent platform can deliver a high editing efficiency and more regenerant plants within a similar time frame. It shows promise for functional genomics and the application of CRISPR technologies for the precise improvement of commercial varieties.
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Affiliation(s)
- Yong Han
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
| | - Sue Broughton
- Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA 6151, Australia
| | - Li Liu
- Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA 6151, Australia
| | - Xiao-Qi Zhang
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
| | - Jianbin Zeng
- College of Agronomy, Qingdao Agricultural University, Qingdao, Shandong 266109, China
| | - Xiaoyan He
- College of Agronomy, Qingdao Agricultural University, Qingdao, Shandong 266109, China
| | - Chengdao Li
- Western Barley Genetics Alliance, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA 6150, Australia
- Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA 6151, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA 6150, Australia
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Lian Q, Fu Q, Xu Y, Hu Z, Zheng J, Zhang A, He Y, Wang C, Xu C, Chen B, Garcia-Mas J, Zhao G, Wang H. QTLs and candidate genes analyses for fruit size under domestication and differentiation in melon (Cucumis melo L.) based on high resolution maps. BMC PLANT BIOLOGY 2021; 21:126. [PMID: 33658004 PMCID: PMC7931605 DOI: 10.1186/s12870-021-02904-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 02/24/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Melon is a very important horticultural crop produced worldwide with high phenotypic diversity. Fruit size is among the most important domestication and differentiation traits in melon. The molecular mechanisms of fruit size in melon are largely unknown. RESULTS Two high-density genetic maps were constructed by whole-genome resequencing with two F2 segregating populations (WAP and MAP) derived from two crosses (cultivated agrestis × wild agrestis and cultivated melo × cultivated agrestis). We obtained 1,871,671 and 1,976,589 high quality SNPs that show differences between parents in WAP and MAP. A total of 5138 and 5839 recombination events generated 954 bins in WAP and 1027 bins in MAP with the average size of 321.3 Kb and 301.4 Kb respectively. All bins were mapped onto 12 linkage groups in WAP and MAP. The total lengths of two linkage maps were 904.4 cM (WAP) and 874.5 cM (MAP), covering 86.6% and 87.4% of the melon genome. Two loci for fruit size were identified on chromosome 11 in WAP and chromosome 5 in MAP, respectively. An auxin response factor and a YABBY transcription factor were inferred to be the candidate genes for both loci. CONCLUSION The high-resolution genetic maps and QTLs analyses for fruit size described here will provide a better understanding the genetic basis of domestication and differentiation, and provide a valuable tool for map-based cloning and molecular marker assisted breeding.
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Affiliation(s)
- Qun Lian
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 100081, Beijing, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518000, China
| | - Qiushi Fu
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 100081, Beijing, China
| | - Yongyang Xu
- Henan Key Laboratory of Fruit and Cucurbit Biology, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Zhicheng Hu
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 100081, Beijing, China
| | - Jing Zheng
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 100081, Beijing, China
| | - Aiai Zhang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 100081, Beijing, China
| | - Yuhua He
- Henan Key Laboratory of Fruit and Cucurbit Biology, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China
| | - Changsheng Wang
- National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences, Shanghai, 200000, China
| | - Chuanqiang Xu
- Shenyang Agricultural University, College of Horticulture, Shenyang, 110866, China
| | - Benxue Chen
- Design Gollege, Zhoukou Normal University, Zhoukou, 466000, China
| | - Jordi Garcia-Mas
- Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Barcelona, Spain
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Barcelona, Spain
| | - Guangwei Zhao
- Henan Key Laboratory of Fruit and Cucurbit Biology, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China.
| | - Huaisong Wang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 100081, Beijing, China.
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Kolbert Z, Szőllősi R, Feigl G, Kónya Z, Rónavári A. Nitric oxide signalling in plant nanobiology: current status and perspectives. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:928-940. [PMID: 33053152 DOI: 10.1093/jxb/eraa470] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 10/10/2020] [Indexed: 05/25/2023]
Abstract
Plant nanobiology as a novel research field provides a scientific basis for the agricultural use of nanoparticles (NPs). Plants respond to the presence of nanomaterials by synthesizing signal molecules, such as the multifunctional gaseous nitric oxide (NO). Several reports have described the effects of different nanomaterials (primarily chitosan NPs, metal oxide NPs, and carbon nanotubes) on endogenous NO synthesis and signalling in different plant species. Other works have demonstrated the ameliorating effect of exogenous NO donor (primarily sodium nitroprusside) treatments on NP-induced stress. NO-releasing NPs are preferred alternatives to chemical NO donors, and evaluating their effects on plants has recently begun. Previous studies clearly indicate that endogenous NO production in the presence of nanomaterials or NO levels increased by exogenous treatments (NO-releasing NPs or chemical NO donors) exerts growth-promoting and stress-ameliorating effects in plants. Furthermore, an NP-based nanosensor for NO detection in plants has been developed, providing a new and excellent perspective for basic research and also for the evaluation of plants' health status in agriculture.
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Affiliation(s)
- Zsuzsanna Kolbert
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Réka Szőllősi
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Gábor Feigl
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Zoltán Kónya
- Department of Applied and Environmental Chemistry, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
| | - Andrea Rónavári
- Department of Applied and Environmental Chemistry, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary
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Manna I, Sahoo S, Bandyopadhyay M. Effect of Engineered Nickel Oxide Nanoparticle on Reactive Oxygen Species-Nitric Oxide Interplay in the Roots of Allium cepa L. FRONTIERS IN PLANT SCIENCE 2021; 12:586509. [PMID: 33633755 PMCID: PMC7901573 DOI: 10.3389/fpls.2021.586509] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 01/06/2021] [Indexed: 06/01/2023]
Abstract
Scientists anxiously follow instances of heavy metals augmenting in the environment and undergoing bioaccumulation and trace their biomagnification across food webs, wary of their potent toxicity on biological entities. Engineered nanoparticles supplement natural pools of respective heavy metals and can mimic their effects, exerting toxicity at higher concentrations. Thus, a thorough understanding of the underlying mechanism of this precarious interaction is mandatory. Most urban and industrial environments contain considerable quantities of nickel oxide nanoparticles. These in excess can cause considerable damage to plant metabolism through a significant increase in cellular reactive oxygen species and perturbation of its cross-talk with the reactive nitrogen species. In the present work, the authors have demonstrated how the intrusion of nickel oxide nanoparticles (NiO-NP) affected the exposed roots of Allium cepa: starting with disruption of cell membranes, before being interiorized within cell organelles, effectively disrupting cellular homeostasis and survival. A major shift in the reactive oxygen species (ROS) and nitric oxide (NO) equanimity was also observed, unleashing major altercations in several crucial biochemical profiles. Altered antioxidant contents and upregulation of stress-responsive genes, namely, Catalase, Ascorbate peroxidase, Superoxide dismutase, and Rubisco activase, showing on average 50-250% rise across NiO-NP concentrations tested, also entailed increased cellular hydrogen peroxide contents, with tandem rise in cellular NO. Increased NO content was evinced from altered concentrations of nitric oxide synthase and nitrate reductase, along with NADPH oxidase, when compared with the negative control. Though initially showing a dose-dependent concomitant rise, a significant decrease of NO was observed at higher concentrations of NiO-NP, while cellular ROS continued to increase. Modified K/Na ratios, with increased proline concentrations and GABA contents, all hallmarks of cellular stress, correlated with ROS-NO perturbations. Detailed studies showed that NiO-NP concentration had a significant role in inducing toxicity, perturbing the fine balance of ROS-NO, which turned lethal for the cell at higher dosages of the ENP precipitating in the accumulation of stress markers and an inevitable shutdown of cellular mechanisms.
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Affiliation(s)
- Indrani Manna
- Department of Botany, CAS, University of Calcutta, Kolkata, India
| | - Saikat Sahoo
- Department of Botany, Krishna Chandra College, Hetampur, India
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Ramadan M, Alariqi M, Ma Y, Li Y, Liu Z, Zhang R, Jin S, Min L, Zhang X. Efficient CRISPR/Cas9 mediated Pooled-sgRNAs assembly accelerates targeting multiple genes related to male sterility in cotton. PLANT METHODS 2021; 17:16. [PMID: 33557889 PMCID: PMC7869495 DOI: 10.1186/s13007-021-00712-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 01/19/2021] [Indexed: 05/04/2023]
Abstract
BACKGROUND Upland cotton (Gossypium hirsutum), harboring a complex allotetraploid genome, consists of A and D sub-genomes. Every gene has multiple copies with high sequence similarity that makes genetic, genomic and functional analyses extremely challenging. The recent accessibility of CRISPR/Cas9 tool provides the ability to modify targeted locus efficiently in various complicated plant genomes. However, current cotton transformation method targeting one gene requires a complicated, long and laborious regeneration process. Hence, optimizing strategy that targeting multiple genes is of great value in cotton functional genomics and genetic engineering. RESULTS To target multiple genes in a single experiment, 112 plant development-related genes were knocked out via optimized CRISPR/Cas9 system. We optimized the key steps of pooled sgRNAs assembly method by which 116 sgRNAs pooled together into 4 groups (each group consisted of 29 sgRNAs). Each group of sgRNAs was compiled in one PCR reaction which subsequently went through one round of vector construction, transformation, sgRNAs identification and also one round of genetic transformation. Through the genetic transformation mediated Agrobacterium, we successfully generated more than 800 plants. For mutants identification, Next Generation Sequencing technology has been used and results showed that all generated plants were positive and all targeted genes were covered. Interestingly, among all the transgenic plants, 85% harbored a single sgRNA insertion, 9% two insertions, 3% three different sgRNAs insertions, 2.5% mutated sgRNAs. These plants with different targeted sgRNAs exhibited numerous combinations of phenotypes in plant flowering tissues. CONCLUSION All targeted genes were successfully edited with high specificity. Our pooled sgRNAs assembly offers a simple, fast and efficient method/strategy to target multiple genes in one time and surely accelerated the study of genes function in cotton.
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Affiliation(s)
- Mohamed Ramadan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
- Department of Plant Genetic Resources, Division of Ecology and Dry Land Agriculture, Desert Research Center, Cairo, Egypt
| | - Muna Alariqi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yizan Ma
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yanlong Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Zhenping Liu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Rui Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Shuangxia Jin
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Ling Min
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
| | - Xianlong Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
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Jiang M, Wang J, Rui M, Yang L, Shen J, Chu H, Song S, Chen Y. OsFTIP7 determines metallic oxide nanoparticles response and tolerance by regulating auxin biosynthesis in rice. JOURNAL OF HAZARDOUS MATERIALS 2021; 403:123946. [PMID: 33264991 DOI: 10.1016/j.jhazmat.2020.123946] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 09/04/2020] [Accepted: 09/09/2020] [Indexed: 06/12/2023]
Abstract
The widely application of metallic oxide nanoparticles (NPs) has led to an increase in their accumulation in farmland. Previous studies have found that the metallic oxide NPs have negative effect on plants development and growth. Nonetheless, the underlying mechanism of response to metallic oxide NPs in rice remains elusive. In this study, we show that rice FT-INTERACTING PROTEIN 7 (OsFTIP7) plays an essential role in NPs of CuO and ZnO-mediated physiological and biochemical changes in rice. Loss of function of OsFTIP7 reduced the toxicity of the NPs of CuO and ZnO to the seedlings by accumulating more biomass and chlorophyll contents. Furthermore, after high exposure to metallic oxide NPs, more indole-3-acetic acid (IAA) were determined in Osftip7 with higher expression of auxin biosynthetic genes than the control seedlings. What's more, IAA-treated seedlings displayed the similar phenotype as Osftip7 under high concentrations of NPs of CuO and ZnO. Taken together, the results substantiate that OsFTIP7 is involved in metallic oxide nanoparticle-mediated physiological and biochemical changes by negatively regulating auxin biosynthesis in rice.
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Affiliation(s)
- Meng Jiang
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China
| | - Jiaxuan Wang
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China
| | - Mengmeng Rui
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China
| | - Lijia Yang
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China
| | - Jun Shen
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China
| | - Huangwei Chu
- Institute of Crop Breeding and Cultivation, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China
| | - Shiyong Song
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China.
| | - Ying Chen
- State Key Laboratory of Rice Biology, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China.
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Pereira C, Costa P, Pinheiro L, Balcão VM, Almeida A. Kiwifruit bacterial canker: an integrative view focused on biocontrol strategies. PLANTA 2021; 253:49. [PMID: 33502587 DOI: 10.1007/s00425-020-03549-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 12/22/2020] [Indexed: 06/12/2023]
Abstract
Phage-based biocontrol strategies can be an effective alternative to control Psa-induced bacterial canker of kiwifruit. The global production of kiwifruit has been seriously affected by Pseudomonas syringae pv. actinidiae (Psa) over the last decade. Psa damages both Actinidia chinensis var. deliciosa (green kiwifruit) but specially the susceptible Actinidia chinensis var. chinensis (gold kiwifruit), resulting in severe economic losses. Treatments for Psa infections currently available are scarce, involving frequent spraying of the kiwifruit plant orchards with copper products. However, copper products should be avoided since they are highly toxic and lead to the development of bacterial resistance to this metal. Antibiotics are also used in some countries, but bacterial resistance to antibiotics is a serious worldwide problem. Therefore, it is essential to develop new approaches for sustainable agriculture production, avoiding the emergence of resistant Psa bacterial strains. Attempts to develop and establish highly accurate approaches to combat and prevent the occurrence of bacterial canker in kiwifruit plants are currently under study, using specific viruses of bacteria (bacteriophages, or phages) to eliminate the Psa. This review discusses the characteristics of Psa-induced kiwifruit canker, Psa transmission pathways, prevention and control, phage-based biocontrol strategies as a new approach to control Psa in kiwifruit orchards and its advantages over other therapies, together with potential ways to bypass phage inactivation by abiotic factors.
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Affiliation(s)
- Carla Pereira
- Department of Biology and CESAM, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal
| | - Pedro Costa
- Department of Biology and CESAM, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal
| | - Larindja Pinheiro
- Department of Biology and CESAM, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal
| | - Victor M Balcão
- Department of Biology and CESAM, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal.
- PhageLab - Laboratory of Biofilms and Bacteriophages, University of Sorocaba, Sorocaba, SP, CEP 18023-000, Brazil.
| | - Adelaide Almeida
- Department of Biology and CESAM, University of Aveiro, Campus de Santiago, 3810-193, Aveiro, Portugal.
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Takeshima R, Ogiso-Tanaka E, Yasui Y, Matsui K. Targeted amplicon sequencing + next-generation sequencing-based bulked segregant analysis identified genetic loci associated with preharvest sprouting tolerance in common buckwheat (Fagopyrum esculentum). BMC PLANT BIOLOGY 2021; 21:18. [PMID: 33407135 PMCID: PMC7789488 DOI: 10.1186/s12870-020-02790-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 12/08/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND Common buckwheat (2n = 2x = 16) is an outcrossing pseudocereal whose seeds contain abundant nutrients and potential antioxidants. As these beneficial compounds are damaged by preharvest sprouting (PHS) and PHS is likely to increase with global warming, it is important to find efficient ways to develop new PHS-tolerant lines. However, genetic loci and selection markers associated with PHS in buckwheat have not been reported. RESULTS By next-generation sequencing (NGS) of whole-genome of parental lines, we developed a genome-wide set of 300 markers. By NGS- based bulked segregant analysis (NGS-BSA), we developed 100 markers linked to PHS tolerance. To confirm the effectiveness of marker development from NGS-BSA data, we developed 100 markers linked to the self-compatibility (SC) trait from previous NGS-BSA data. Using these markers, we developed genetic maps with AmpliSeq technology, which can quickly detect polymorphisms by amplicon-based multiplex targeted NGS, and performed quantitative trait locus (QTL) analysis for PHS tolerance in combination with NGS-BSA. QTL analysis detected two major and two minor QTLs for PHS tolerance in a segregating population developed from a cross between the PHS-tolerant 'Kyukei 29' and the self-compatible susceptible 'Kyukei SC7'. We found different major and minor QTLs in other segregating populations developed from the PHS-tolerant lines 'Kyukei 28' and 'NARO-FE-1'. Candidate markers linked to PHS developed by NGS-BSA were located near these QTL regions. We also investigated the effectiveness of markers linked to these QTLs for selection of PHS-tolerant lines among other segregating populations. CONCLUSIONS We efficiently developed genetic maps using a method combined with AmpliSeq technology and NGS-BSA, and detected QTLs associated with preharvest sprouting tolerance in common buckwheat. This is the first report to identify QTLs for PHS tolerance in buckwheat. Our marker development system will accelerate genetic research and breeding in common buckwheat.
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Affiliation(s)
- Ryoma Takeshima
- Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Kannondai 3-1-3, Tsukuba, Ibaraki, 305-8518, Japan
| | - Eri Ogiso-Tanaka
- Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Kannondai 3-1-3, Tsukuba, Ibaraki, 305-8518, Japan
| | - Yasuo Yasui
- Graduate School of Agriculture, Kyoto University, Kitasirakawa Oiwake-Cho, Sakyou-ku, Kyoto, 606-8501, Japan
| | - Katsuhiro Matsui
- Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Kannondai 3-1-3, Tsukuba, Ibaraki, 305-8518, Japan.
- Graduate School of Life and Environmental Science, University of Tsukuba, Kannondai 3-1-3, Tsukuba, Ibaraki, 305-8518, Japan.
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Li W, Finnegan PM, Dai Q, Guo D, Yang M. Metabolic acclimation supports higher aluminium-induced secretion of citrate and malate in an aluminium-tolerant hybrid clone of Eucalyptus. BMC PLANT BIOLOGY 2021; 21:14. [PMID: 33407145 PMCID: PMC7789223 DOI: 10.1186/s12870-020-02788-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 12/08/2020] [Indexed: 05/03/2023]
Abstract
BACKGROUND Eucalyptus is the main plantation wood species, mostly grown in aluminized acid soils. To understand the response of Eucalyptus clones to aluminum (Al) toxicity, the Al-tolerant Eucalyptus grandis × E. urophylla clone GL-9 (designated "G9") and the Al-sensitive E. urophylla clone GL-4 (designated "W4") were employed to investigate the production and secretion of citrate and malate by roots. RESULTS Eucalyptus seedlings in hydroponics were exposed to the presence or absence of 4.4 mM Al at pH 4.0 for 24 h. The protein synthesis inhibitor cycloheximide (CHM) and anion channel blocker phenylglyoxal (PG) were applied to explore possible pathways involved in organic acid secretion. The secretion of malate and citrate was earlier and greater in G9 than in W4, corresponding to less Al accumulation in G9. The concentration of Al in G9 roots peaked after 1 h and decreased afterwards, corresponding with a rapid induction of malate secretion. A time-lag of about 6 h in citrate efflux in G9 was followed by robust secretion to support continuous Al-detoxification. Malate secretion alone may alleviate Al toxicity because the peaks of Al accumulation and malate secretion were simultaneous in W4, which did not secrete appreciable citrate. Enhanced activities of citrate synthase (CS) and phosphoenolpyruvate carboxylase (PEPC), and reduced activities of isocitrate dehydrogenase (IDH), aconitase (ACO) and malic enzyme (ME) were closely associated with the greater secretion of citrate in G9. PG effectively inhibited citrate and malate secretion in both Eucalyptus clones. CHM also inhibited malate and citrate secretion in G9, and citrate secretion in W4, but notably did not affect malate secretion in W4. CONCLUSIONS G9 immediately secrete malate from roots, which had an initial effect on Al-detoxification, followed by time-delayed citrate secretion. Pre-existing anion channel protein first contributed to malate secretion, while synthesis of carrier protein appeared to be needed for citrate excretion. The changes of organic acid concentrations in response to Al can be achieved by enhanced CS and PEPC activities, but was supported by changes in the activities of other enzymes involved in organic acid metabolism. The above information may help to further explore genes related to Al-tolerance in Eucalyptus.
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Affiliation(s)
- Wannian Li
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, 100 East University Road, Nanning, 530004 Guangxi People’s Republic of China
| | - Patrick M. Finnegan
- School of Biological Sciences, University of Western Australia, Perth, 6009 Australia
| | - Qin Dai
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, 100 East University Road, Nanning, 530004 Guangxi People’s Republic of China
| | - Dongqiang Guo
- Guangxi Forestry Rearch Institute, Nanning, 530002 Guangxi People’s Republic of China
| | - Mei Yang
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, 100 East University Road, Nanning, 530004 Guangxi People’s Republic of China
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Wang L, Wu WM, Bolan NS, Tsang DCW, Li Y, Qin M, Hou D. Environmental fate, toxicity and risk management strategies of nanoplastics in the environment: Current status and future perspectives. JOURNAL OF HAZARDOUS MATERIALS 2021; 401:123415. [PMID: 32763705 PMCID: PMC7345412 DOI: 10.1016/j.jhazmat.2020.123415] [Citation(s) in RCA: 248] [Impact Index Per Article: 82.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 06/23/2020] [Accepted: 07/04/2020] [Indexed: 05/19/2023]
Abstract
Tiny plastic particles considered as emerging contaminants have attracted considerable interest in the last few years. Mechanical abrasion, photochemical oxidation and biological degradation of larger plastic debris result in the formation of microplastics (MPs, 1 μm to 5 mm) and nanoplastics (NPs, 1 nm to 1000 nm). Compared with MPs, the environmental fate, ecosystem toxicity and potential risks associated with NPs have so far been less explored. This review provides a state-of-the-art overview of current research on NPs with focus on currently less-investigated fields, such as the environmental fate in agroecosystems, migration in porous media, weathering, and toxic effects on plants. The co-transport of NPs with organic contaminants and heavy metals threaten human health and ecosystems. Furthermore, NPs may serve as a novel habitat for microbial colonization, and may act as carriers for pathogens (i.e., bacteria and viruses). An integrated framework is proposed to better understand the interrelationships between NPs, ecosystems and the human society. In order to fully understand the sources and sinks of NPs, more studies should focus on the total environment, including freshwater, ocean, groundwater, soil and air, and more attempts should be made to explore the aging and aggregation of NPs in environmentally relevant conditions. Considering the fact that naturally-weathered plastic debris may have distinct physicochemical characteristics, future studies should explore the environmental behavior of naturally-aged NPs rather than synthetic polystyrene nanobeads.
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Affiliation(s)
- Liuwei Wang
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Wei-Min Wu
- Department of Civil and Environmental Engineering, William & Cloy Codiga Resource Recovery Center, Center for Sustainable Development & Global Competitiveness, Stanford University, Stanford, CA 94305-4020, USA
| | - Nanthi S Bolan
- Global Centre for Environmental Remediation, The University of Newcastle, Callaghan, NSW 2308, Australia
| | - Daniel C W Tsang
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
| | - Yang Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, China
| | - Muhan Qin
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Deyi Hou
- School of Environment, Tsinghua University, Beijing 100084, China.
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Zhou J, Chen S, Shi W, David-Schwartz R, Li S, Yang F, Lin Z. Transcriptome profiling reveals the effects of drought tolerance in Giant Juncao. BMC PLANT BIOLOGY 2021; 21:2. [PMID: 33390157 PMCID: PMC7780708 DOI: 10.1186/s12870-020-02785-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Accepted: 12/06/2020] [Indexed: 05/05/2023]
Abstract
BACKGROUND Giant Juncao is often used as feed for livestock because of its huge biomass. However, drought stress reduces forage production by affecting the normal growth and development of plants. Therefore, investigating the molecular mechanisms of drought tolerance will provide important information for the improvement of drought tolerance in this grass. RESULTS A total of 144.96 Gb of clean data was generated and assembled into 144,806 transcripts and 93,907 unigenes. After 7 and 14 days of drought stress, a total of 16,726 and 46,492 differentially expressed genes (DEGs) were observed, respectively. Compared with normal irrigation, 16,247, 23,503, and 11,598 DEGs were observed in 1, 5, and 9 days following rehydration, respectively. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses revealed abiotic stress-responsive genes and pathways related to catalytic activity, methyltransferase activity, transferase activity, and superoxide metabolic process. We also identified transcription factors belonging to several families, including basic helix-loop-helix (bHLH), WRKY, NAM (no apical meristem), ATAF1/2 and CUC2 (cup-shaped cotyledon) (NAC), fatty acyl-CoA reductase (FAR1), B3, myeloblastosis (MYB)-related, and basic leucine zipper (bZIP) families, which are important drought-rehydration-responsive proteins. Weighted gene co-expression network analysis was also used to analyze the RNA-seq data to predict the interrelationship between genes. Twenty modules were obtained, and four of these modules may be involved in photosynthesis and plant hormone signal transduction that respond to drought and rehydration conditions. CONCLUSIONS Our research is the first to provide a more comprehensive understanding of DEGs involved in drought stress at the transcriptome level in Giant Juncao with different drought and recovery conditions. These results may reveal insights into the molecular mechanisms of drought tolerance in Giant Juncao and provide diverse genetic resources involved in drought tolerance research.
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Affiliation(s)
- Jing Zhou
- National Engineering Research Center of Juncao, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Siqi Chen
- College of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Wenjiao Shi
- College of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Rakefet David-Schwartz
- Institute of Plant Sciences, Volcani Center, Agriculture Research Organization, 50250, Bet Dagan, Israel
| | - Sutao Li
- College of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Fulin Yang
- College of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Zhanxi Lin
- National Engineering Research Center of Juncao, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
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Guillamón JG, Prudencio ÁS, Yuste JE, Dicenta F, Sánchez-Pérez R. Ascorbic acid and prunasin, two candidate biomarkers for endodormancy release in almond flower buds identified by a nontargeted metabolomic study. HORTICULTURE RESEARCH 2020; 7:203. [PMID: 33328455 PMCID: PMC7705690 DOI: 10.1038/s41438-020-00427-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 10/16/2020] [Accepted: 10/20/2020] [Indexed: 05/13/2023]
Abstract
Temperate fruit trees belonging to Prunus species have the ability to suspend (induce dormancy) and resume growth periodically in response to environmental and seasonal conditions. Endodormancy release requires the long-term accumulation of chill. Upon accumulation of cultivar-specific chill requirements, plants enter the state of ecodormancy, which means the ability to grow has been restored, depending on the fulfilment of heat requirements. As many different metabolic pathways are implicated in endodormancy release, we have performed a metabolomic analysis, using the ultra-high-performance liquid chromatography-quadrupole time-of-flying (UPLC-QToF) technique. We assayed flower buds in different stages of endodormancy in four almond cultivars with different flowering times: the extra-early Desmayo Largueta, the late Antoñeta, the extra-late Penta, and the ultra-late Tardona. An orthogonal projection to latent-structure discriminant-analysis model was created to observe differences between endodormant and ecodormant flower buds. The metabolites showing the most significant variation were searched against the Metlin, HMDB, and KEGG libraries, which allowed us to identify 87 metabolites. These metabolites were subsequently assigned to specific pathways, such as abscisic acid biosynthesis, phenylpropanoid biosynthesis, and D-sorbitol metabolism, among others. The two metabolites that exhibited the most significant variations in all the cultivars studied with fold changes of up to 6.49 were ascorbic acid and prunasin. For the first time, these two metabolites have been proposed as potential biomarkers for endodormancy release in almond. Given the high synteny present between the Rosaceae species, these results could be extrapolated to other important crops like peach, plum, cherry, or apricot, among others.
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Affiliation(s)
- Jesús Guillamón Guillamón
- Department of Plant Breeding. CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Espinardo, Spain
| | - Ángela Sánchez Prudencio
- Department of Plant Breeding. CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Espinardo, Spain
| | - José Enrique Yuste
- Metabolomics Platform of CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Espinardo, Spain
| | - Federico Dicenta
- Department of Plant Breeding. CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Espinardo, Spain
| | - Raquel Sánchez-Pérez
- Department of Plant Breeding. CEBAS-CSIC, Campus Universitario de Espinardo, 30100, Espinardo, Spain.
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71
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Reichardt S, Budahn H, Lamprecht D, Riewe D, Ulrich D, Dunemann F, Kopertekh L. The carrot monoterpene synthase gene cluster on chromosome 4 harbours genes encoding flavour-associated sabinene synthases. HORTICULTURE RESEARCH 2020; 7:190. [PMID: 33328444 PMCID: PMC7705728 DOI: 10.1038/s41438-020-00412-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 08/26/2020] [Accepted: 09/23/2020] [Indexed: 05/03/2023]
Abstract
In plants, low molecular weight terpenes produced by terpene synthases (TPS) contribute to multiple ecologically and economically important traits. The present study investigates a carrot terpene synthase gene cluster on chromosome 4 associated with volatile monoterpene production. Two carrot mutants, yellow and cola, which are contrasting in the content of low molecular weight terpenes, were crossed to develop an F2 mapping population. The mapping analysis revealed overlapping QTLs on chromosome 4 for sabinene, α-thujene, α-terpinene, γ-terpinene, terpinen-4-ol and 4-carene. The genomic region of this locus includes a cluster of five terpene synthase genes (DcTPS04, DcTPS26, DcTPS27, DcTPS54 and DcTPS55). DcTPS04 and DcTPS54 displayed genotype- and tissue-specific variation in gene expression. Based on the QTL mapping results and the gene expression patterns, DcTPS04 and DcTPS54 were selected for functional characterization. In vitro enzyme assays showed that DcTPS54 is a single-product enzyme catalysing the formation of sabinene, whereas DcTPS04 is a multiple-product terpene synthase producing α-terpineol as a major product and four additional products including sabinene, β-limonene, β-pinene and myrcene. Furthermore, we developed a functional molecular marker that could discriminate carrot genotypes with different sabinene content in a set of 85 accessions.
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Affiliation(s)
- Sven Reichardt
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany.
| | - Holger Budahn
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany
| | - Dominic Lamprecht
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany
| | - David Riewe
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany
| | - Detlef Ulrich
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany
| | - Frank Dunemann
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany
| | - Lilya Kopertekh
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, D-06484, Quedlinburg, Germany
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Spanò C, Bottega S, Bellani L, Muccifora S, Sorce C, Ruffini Castiglione M. Effect of Zinc Priming on Salt Response of Wheat Seedlings: Relieving or Worsening? PLANTS (BASEL, SWITZERLAND) 2020; 9:E1514. [PMID: 33171649 PMCID: PMC7695260 DOI: 10.3390/plants9111514] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 11/03/2020] [Accepted: 11/05/2020] [Indexed: 11/22/2022]
Abstract
In an attempt to alleviate salt-induced damage, the application of ZnO nanoparticles has been suggested. As the use of these particles has also been associated with phytotoxicity, to better clarify the effect of zinc and its possible mitigation of salt stress, we treated wheat seedlings with ZnO (nanoparticles or their bulk-scale counterparts, amended either in the growth medium, NPs and B, or sprayed on the leaves, SPNPs and SPB) with or without subsequent treatment with salt. Growth, photosynthetic parameters, zinc and ion concentration, and in situ and biochemical determination of oxidative stress in wheat leaves and/or in roots were considered. Both Zn and NaCl significantly inhibited growth and induced severe alterations in root morphology. Oxidative stress and damage decreased or increased under ZnO treatment and in saline conditions depending on the organ and on the size and mode of application of particles. In spite of the higher stress conditions often recorded in treated leaves, neither pigment concentration nor photochemical efficiency were decreased. A large variability in the effects of ZnO treatment/priming on seedling salt response was recorded; however, the presence of a cumulative negative effect of priming and salt stress sometimes observed calls for caution in the use of ZnO in protection from saline stress.
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Affiliation(s)
- Carmelina Spanò
- Department of Biology, University of Pisa, 56126 Pisa, Italy; (S.B.); (C.S.); (M.R.C.)
- Centre for Climate Change Impact, University of Pisa, 56124 Pisa, Italy
| | - Stefania Bottega
- Department of Biology, University of Pisa, 56126 Pisa, Italy; (S.B.); (C.S.); (M.R.C.)
| | - Lorenza Bellani
- Department of Life Sciences, University of Siena, 53100 Siena, Italy; (L.B.); (S.M.)
- Institute ofAgricultural Biology and Biotechnology (IBBA), National Research Council, 56124 Pisa, Italy
| | - Simonetta Muccifora
- Department of Life Sciences, University of Siena, 53100 Siena, Italy; (L.B.); (S.M.)
| | - Carlo Sorce
- Department of Biology, University of Pisa, 56126 Pisa, Italy; (S.B.); (C.S.); (M.R.C.)
- Centre for Climate Change Impact, University of Pisa, 56124 Pisa, Italy
| | - Monica Ruffini Castiglione
- Department of Biology, University of Pisa, 56126 Pisa, Italy; (S.B.); (C.S.); (M.R.C.)
- Centre for Climate Change Impact, University of Pisa, 56124 Pisa, Italy
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Patel KV, Nath M, Bhatt MD, Dobriyal AK, Bhatt D. Nanofomulation of zinc oxide and chitosan zinc sustain oxidative stress and alter secondary metabolite profile in tobacco. 3 Biotech 2020; 10:477. [PMID: 33088670 PMCID: PMC7567778 DOI: 10.1007/s13205-020-02469-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 10/05/2020] [Indexed: 10/23/2022] Open
Abstract
Advancement in nanotechnology has improved ways for large-scale production and characterization of nanoparticles of physiologically important metals. The current study explores the impact of Zinc Oxide Nanoparticles (ZnO-NP) and Chitosan-Zinc oxide nano-bioformulation (CH-ZnO) in tissue culture raised callus of Nicotiana benthamiana. Results indicated augmented biomass in CH-ZnO treated callus, while a reduced biomass was observed in ZnO-NP treated callus, at all the concentrations tested. Higher chlorophyll and carotenoid content were recorded in callus treated with 800 ppm CH-ZnO as compared to ZnO-NP treated callus. A higher accumulation of proline was observed in CH-ZnO treated callus when compared to ZnO-NP treatment, which was significantly higher at 50, 200 and 400 ppm CH-ZnO treatment. A maximum reduction in malondialdehyde (MDA) content was recorded at 800 ppm, for both the nano-formulations tested. Likewise, a significant reduction in the H2O2 levels was observed in all the treatments, while the callus treated with 400 ppm ZnO-NP and 800 ppm CH-ZnO recorded the highest reduction. Phenylalanine Ammonia-Lyase (PAL), activity increased significantly in callus treated with 400 ppm concentration for both ZnO-NP and CH-ZnO with respect to control. An increased level of tannin and nicotine were recorded in callus supplemented with 50, 200 and 400 ppm CH-ZnO. Notably, a significant decline of 94 and 52% in tannin content and 25 and 50% in nicotine content was recorded in the callus treated with 800 ppm CH-ZnO and ZnO-NP, respectively. The findings of this study suggest that an optimized dosage of these nano-bioformulations could be utilized to regulate the nicotine content and stress tolerance level.
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Affiliation(s)
- Kinjal V. Patel
- Department of Biotechnology, Shree Ramkrishna Institute of Computer Education and Applied Sciences, Affiliated to Veer Narmad South Gujarat University, Surat, Gujarat India
| | - Manoj Nath
- ICAR-Directorate of Mushroom Research, Chambaghat, Solan, Himachal Pradesh India
| | - Megha D. Bhatt
- G B Pant University of Agriculture and Technology, Pantnagar, Uttarakhand India
| | - Anoop K. Dobriyal
- HNB Garhwal Central University, Pauri campus, Garhwal, Uttarakhand India
| | - Deepesh Bhatt
- Department of Biotechnology, Shree Ramkrishna Institute of Computer Education and Applied Sciences, Affiliated to Veer Narmad South Gujarat University, Surat, Gujarat India
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Khan R, Ma X, Shah S, Wu X, Shaheen A, Xiao L, Wu Y, Wang S. Drought-hardening improves drought tolerance in Nicotiana tabacum at physiological, biochemical, and molecular levels. BMC PLANT BIOLOGY 2020; 20:486. [PMID: 33097005 PMCID: PMC7584104 DOI: 10.1186/s12870-020-02688-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Accepted: 10/07/2020] [Indexed: 05/04/2023]
Abstract
BACKGROUND Drought stress is the most harmful one among other abiotic stresses with negative impacts on crop growth and development. Drought-hardening is a feasible and widely used method in tobacco seedlings cultivation. It has gained extensive interests due to its role in improving drought tolerance. This research aimed to investigate the role of drought-hardening and to unravel the multiple mechanisms underlying tobacco drought tolerance and adaptation. RESULTS This study was designed in which various drought-hardening treatments (CK (no drought-hardening), T1 (drought-hardening for 24 h), T2 (drought-hardening for 48 h), and T3 (drought-hardening for 72 h)) were applied to two tobacco varieties namely HongHuaDaJinYuan (H) and Yun Yan-100 (Y). The findings presented a complete framework of drought-hardening effect at physiological, biochemical, and gene expression levels of the two tobacco varieties under drought stress. The results showed that T2 and T3 significantly reduced the growth of the two varieties under drought stress. Similarly, among the various drought-hardening treatments, T3 improved both the enzymatic (POD, CAT, APX) and non-enzymatic (AsA) defense systems along with the elevated levels of proline and soluble sugar to mitigate the negative effects of oxidative damage and bringing osmoregulation in tobacco plants. Finally, the various drought-hardening treatments (T1, T2, and T3) showed differential regulation of genes expressed in the two varieties, while, particularly T3 drought-hardening treatment-induced drought tolerance via the expression of various stress-responsive genes by triggering the biosynthesis pathways of proline (P5CS1), polyamines (ADC2), ABA-dependent (SnRK2, AREB1), and independent pathways (DREB2B), and antioxidant defense-related genes (CAT, APX1, GR2) in response to drought stress. CONCLUSIONS Drought-hardening made significant contributions to drought tolerance and adaptation in two tobacco variety seedlings by reducing its growth and, on the other hand, by activating various defense mechanisms at biochemical and molecular levels. The findings of the study pointed out that drought-hardening is a fruitful strategy for conferring drought tolerance and adaptations in tobacco. It will be served as a useful method in the future to understand the drought tolerance and adaptation mechanisms of other plant species. Drought-hardening improved drought tolerance and adaptation of the two tobacco varieties. T1 indicates drought-hardening for 24 h, T2 indicates drought-hardening for 48 h, T3 indicates drought-hardening for 72 h.
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Affiliation(s)
- Rayyan Khan
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture, Qingdao, 266101 China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Xinghua Ma
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture, Qingdao, 266101 China
| | - Shahen Shah
- Department of Agronomy, The University of Agriculture Peshawar, Peshawar, 25130 Pakistan
| | - Xiaoying Wu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture, Qingdao, 266101 China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Aaqib Shaheen
- Key Laboratory of Plant Stress Biology, State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, 475004 China
| | - Lixia Xiao
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture, Qingdao, 266101 China
| | - Yuanhua Wu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture, Qingdao, 266101 China
| | - Shusheng Wang
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Tobacco Biology and Processing, Ministry of Agriculture, Qingdao, 266101 China
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Sabir S, Zahoor MA, Waseem M, Siddique MH, Shafique M, Imran M, Hayat S, Malik IR, Muzammil S. Biosynthesis of ZnO Nanoparticles Using Bacillus Subtilis: Characterization and Nutritive Significance for Promoting Plant Growth in Zea mays L. Dose Response 2020; 18:1559325820958911. [PMID: 32973419 PMCID: PMC7493260 DOI: 10.1177/1559325820958911] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 08/11/2020] [Accepted: 08/21/2020] [Indexed: 12/19/2022] Open
Abstract
Nano-fertilizer(s), an emerging field of agriculture, is alternate option for enhancement of plant growth replacing the synthetic fertilizers. Zinc oxide nanoparticles (ZnO NPs) can be used as the zinc source for plants. The present investigation was carried out to assess the role of ZnO NPs in growth promotion of maize plants. Biosynthesized ZnO NPs (using Bacillus sp) were characterized using Scanning Electron Microscope (SEM), Transmission Electron Microscope (TEM), X-ray diffraction (XRD) and Zeta potential. Different concentrations of ZnO NPs (2, 4, 8, 16 mg/L) were explored in pot culture experiment. Size of ZnO NPs ranged between 16 and 20 nm. A significant increase in growth parameters like shoot length (61.7%), root length (56.9%) and significantly higher level of protein was observed in the treated plants. The overall pattern for growth biomarkers including the protein contents was maximum at 8 mg/L of ZnO NPs. It was observed that application of biosynthesized ZnO NPs has improved majority of growth biomarkers including plant growth parameters, protein contents and leaf area. Therefore, biosynthesized ZnO NPs could be considered as an alternate source of nutrient in Zn deficient soils for promoting the modern agriculture.
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Affiliation(s)
- Sumera Sabir
- Department of Microbiology, Government College University, Faisalabad, Pakistan
| | | | - Muhammad Waseem
- Department of Microbiology, Government College University, Faisalabad, Pakistan
| | | | - Muhammad Shafique
- Department of Microbiology, Government College University, Faisalabad, Pakistan
| | - Muhammad Imran
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari, Pakistan
| | - Sumreen Hayat
- Department of Microbiology, Government College University, Faisalabad, Pakistan.,Department of Biotechnology, University of Sargodha, Sargodha, Pakistan
| | - Imran Riaz Malik
- Department of Biotechnology, University of Sargodha, Sargodha, Pakistan
| | - Saima Muzammil
- Department of Microbiology, Government College University, Faisalabad, Pakistan
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Grabsztunowicz M, Rokka A, Farooq I, Aro EM, Mulo P. Gel-based proteomic map of Arabidopsis thaliana root plastids and mitochondria. BMC PLANT BIOLOGY 2020; 20:413. [PMID: 32887556 PMCID: PMC7650296 DOI: 10.1186/s12870-020-02635-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 08/30/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Non-photosynthetic plastids of plants are known to be involved in a range of metabolic and biosynthetic reactions, even if they have been difficult to study due to their small size and lack of color. The morphology of root plastids is heterogeneous and also the plastid size, density and subcellular distribution varies depending on the cell type and developmental stage, and therefore the functional features have remained obscure. Although the root plastid proteome is likely to reveal specific functional features, Arabidopsis thaliana root plastid proteome has not been studied to date. RESULTS In the present study, we separated Arabidopsis root protein fraction enriched with plastids and mitochondria by 2D-PAGE and identified 84 plastid-targeted and 77 mitochondrion-targeted proteins using LC-MS/MS. The most prevalent root plastid protein categories represented amino acid biosynthesis, carbohydrate metabolism and lipid biosynthesis pathways, while the enzymes involved in starch and sucrose metabolism were not detected. Mitochondrion-targeted proteins were classified mainly into the energetics category. CONCLUSIONS This is the first study presenting gel-based map of Arabidopsis thaliana root plastid and mitochondrial proteome. Our findings suggest that Arabidopsis root plastids have broad biosynthetic capacity, and that they do not play a major role in a long-term storage of carbohydrates. The proteomic map provides a tool for further studies to compare changes in the proteome, e.g. in response to environmental cues, and emphasizes the role of root plastids in nitrogen and sulfur metabolism as well as in amino acid and fatty acid biosynthesis. The results enable taking a first step towards an integrated view of root plastid/mitochondrial proteome and metabolic functions in Arabidopsis thaliana roots.
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Affiliation(s)
| | - Anne Rokka
- Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland
| | - Irum Farooq
- Molecular Plant Biology, University of Turku, 20520, Turku, Finland
| | - Eva-Mari Aro
- Molecular Plant Biology, University of Turku, 20520, Turku, Finland
| | - Paula Mulo
- Molecular Plant Biology, University of Turku, 20520, Turku, Finland.
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Kim SL, Kim N, Lee H, Lee E, Cheon KS, Kim M, Baek J, Choi I, Ji H, Yoon IS, Jung KH, Kwon TR, Kim KH. High-throughput phenotyping platform for analyzing drought tolerance in rice. PLANTA 2020; 252:38. [PMID: 32779032 PMCID: PMC7417419 DOI: 10.1007/s00425-020-03436-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Accepted: 07/29/2020] [Indexed: 05/21/2023]
Abstract
A new imaging platform was constructed to analyze drought-tolerant traits of rice. Rice was used to quantify drought phenotypes through image-based parameters and analyzing tools. Climate change has increased the frequency and severity of drought, which limits crop production worldwide. Developing new cultivars with increased drought tolerance and short breeding cycles is critical. However, achieving this goal requires phenotyping a large number of breeding populations in a short time and in an accurate manner. Novel cutting-edge technologies such as those based on remote sensors are being applied to solve this problem. In this study, new technologies were applied to obtain and analyze imaging data and establish efficient screening platforms for drought tolerance in rice using the drought-tolerant mutant osphyb. Red-Green-Blue images were used to predict plant area, color, and compactness. Near-infrared imaging was used to determine the water content of rice, infrared was used to assess plant temperature, and fluorescence was used to examine photosynthesis efficiency. DroughtSpotter technology was used to determine water use efficiency, plant water loss rate, and transpiration rate. The results indicate that these methods can detect the difference between tolerant and susceptible plants, suggesting their value as high-throughput phenotyping methods for short breeding cycles as well as for functional genetic studies of tolerance to drought stress.
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Affiliation(s)
- Song Lim Kim
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Nyunhee Kim
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Hongseok Lee
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
- Department of Agricultural Machinery Engineering, Chungnam National University, Daejeon, 34134, Republic of Korea
| | - Eungyeong Lee
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
- Department of Crop Science and Biotechnology, Jeonbuk National University, Jeonju, 54896, Republic of Korea
| | - Kyeong-Seong Cheon
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Minsu Kim
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - JeongHo Baek
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Inchan Choi
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Hyeonso Ji
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - In Sun Yoon
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Ki-Hong Jung
- Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin, Republic of Korea
| | - Taek-Ryoun Kwon
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea
| | - Kyung-Hwan Kim
- The National Institute of Agricultural Sciences, 370 Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do, Republic of Korea.
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Zhang L, Xu Z, Xu D, Ma J, Chen Y, Fu Z. Growth monitoring of greenhouse lettuce based on a convolutional neural network. HORTICULTURE RESEARCH 2020; 7:124. [PMID: 32821407 PMCID: PMC7395764 DOI: 10.1038/s41438-020-00345-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 04/20/2020] [Accepted: 05/17/2020] [Indexed: 05/24/2023]
Abstract
Growth-related traits, such as aboveground biomass and leaf area, are critical indicators to characterize the growth of greenhouse lettuce. Currently, nondestructive methods for estimating growth-related traits are subject to limitations in that the methods are susceptible to noise and heavily rely on manually designed features. In this study, a method for monitoring the growth of greenhouse lettuce was proposed by using digital images and a convolutional neural network (CNN). Taking lettuce images as the input, a CNN model was trained to learn the relationship between images and the corresponding growth-related traits, i.e., leaf fresh weight (LFW), leaf dry weight (LDW), and leaf area (LA). To compare the results of the CNN model, widely adopted methods were also used. The results showed that the values estimated by CNN had good agreement with the actual measurements, with R2 values of 0.8938, 0.8910, and 0.9156 and normalized root mean square error (NRMSE) values of 26.00, 22.07, and 19.94%, outperforming the compared methods for all three growth-related traits. The obtained results showed that the CNN demonstrated superior estimation performance for the flat-type cultivars of Flandria and Tiberius compared with the curled-type cultivar of Locarno. Generalization tests were conducted by using images of Tiberius from another growing season. The results showed that the CNN was still capable of achieving accurate estimation of the growth-related traits, with R2 values of 0.9277, 0.9126, and 0.9251 and NRMSE values of 22.96, 37.29, and 27.60%. The results indicated that a CNN with digital images is a robust tool for the monitoring of the growth of greenhouse lettuce.
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Affiliation(s)
- Lingxian Zhang
- China Agricultural University, Beijing, 100083 China
- Key Laboratory of Agricultural Informationization Standardization, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Zanyu Xu
- China Agricultural University, Beijing, 100083 China
| | - Dan Xu
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Juncheng Ma
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Yingyi Chen
- China Agricultural University, Beijing, 100083 China
| | - Zetian Fu
- China Agricultural University, Beijing, 100083 China
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79
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Luo H, Hill CB, Zhou G, Zhang XQ, Li C. Genome-wide association mapping reveals novel genes associated with coleoptile length in a worldwide collection of barley. BMC PLANT BIOLOGY 2020; 20:346. [PMID: 32698771 PMCID: PMC7374919 DOI: 10.1186/s12870-020-02547-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 07/08/2020] [Indexed: 05/08/2023]
Abstract
BACKGROUND Drought is projected to become more frequent and severe in a changing climate, which requires deep sowing of crop seeds to reach soil moisture. Coleoptile length is a key agronomic trait in cereal crops such as barley, as long coleoptiles are linked to drought tolerance and improved seedling establishment under early water-limited growing conditions. RESULTS In this study, we detected large genetic variation in a panel of 328 diverse barley (Hordeum vulgare L.) accessions. To understand the overall genetic basis of barley coleoptile length, all accessions were germinated in the dark and phenotyped for coleoptile length after 2 weeks. The investigated barleys had significant variation for coleoptile length. We then conducted genome-wide association studies (GWASs) with more than 30,000 molecular markers and identified 8 genes and 12 intergenic loci significantly associated with coleoptile length in our barley panel. The Squamosa promoter-binding-like protein 3 gene (SPL3) on chromosome 6H was identified as a major candidate gene. The missense variant on the second exon changed serine to alanine in the conserved SBP domain, which likely impacted its DNA-binding activity. CONCLUSION This study provides genetic loci for seedling coleoptile length along with candidate genes for future potential incorporation in breeding programmes to enhance early vigour and yield potential in water-limited environments.
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Affiliation(s)
- Hao Luo
- Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia
| | - Camilla Beate Hill
- Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia
| | - Gaofeng Zhou
- Department of Primary Industries and Regional Development, Agriculture and Food, South Perth, WA, Australia
| | - Xiao-Qi Zhang
- Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia
| | - Chengdao Li
- Western Barley Genetics Alliance, Agricultural Sciences, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia.
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80
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Huang Z, Xie W, Wang M, Liu X, Ashraf U, Qin D, Zhuang M, Li W, Li Y, Wang S, Tian H, Mo Z. Response of rice genotypes with differential nitrate reductase-dependent NO synthesis to melatonin under ZnO nanoparticles' (NPs) stress. CHEMOSPHERE 2020; 250:126337. [PMID: 32135442 DOI: 10.1016/j.chemosphere.2020.126337] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 11/24/2019] [Accepted: 02/24/2020] [Indexed: 06/10/2023]
Abstract
Nitrate reductase is a nitric oxide (NO) induced enzyme in plants, NO acts as a signaling molecule under ZnO NPs-induced stress whereas melatonin (N-acetyl-5-methoxytryptamine) could improve morpho-physiological attributes of plants under adverse conditions. In present study, seedlings of two rice genotypes differed regarding nitrate reductase activities i.e., transgenic 'NR' and wild type 'WT' were applied with two melatonin levels i.e., 0, 10 μΜ regarded as M0, M10, respectively and three levels of ZnO NPs i.e., 0, 50, 500 mg L-1 regarded as ZnO NPs0, ZnO NPs50 and ZnO NPs500, respectively. Results revealed that melatonin application substantially increased the dry biomass accumulation of both rice genotypes under all ZnO NPs levels. The root growth, mineral absorption as well as the antioxidant responses were also improved by melatonin application under ZnO NPs stress. The interactive effects of melatonin and genotype on plant growth, antioxidant responses and mineral contents i.e., Zn, Na, Fe and Mn were also found significant under different ZnO NPs stress. Furthermore, total plant dry weight was significantly correlated with the leaf dry weight, root volume, catalase (CAT) activity in leaves, Na accumulation in stem sheath and Fe accumulation in root under both M0 and M10 treatments. Moreover, the comparative transcriptome analysis identified key genes which were responsible for melatonin and NO-induced modulations in plant growth under ZnO NPs stress. Overall, melatonin could improve the morphological growth of the rice plants by modulating root-shoot characteristics, antioxidant activities and mineral uptake in root and shoot of rice.
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Affiliation(s)
- Zhuoli Huang
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Wenjun Xie
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Meng Wang
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Xuwei Liu
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Umair Ashraf
- Department of Botany, Division of Science and Technology, University of Education, Lahore, 54770, Punjab, Pakistan
| | - Dejun Qin
- Guangdong Seed Association, Guangzhou, 510000, Guangdong, China
| | - Maosen Zhuang
- BASF(China) Company Limited Guangzhou Branch, Guangzhou, 510095, Guangdong, China
| | - Wu Li
- Crop Research Institute, Guangdong Academy of Agricultural Sciences, Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou, 510640, Guangdong, China
| | - Yuzhan Li
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Shuli Wang
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China; Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture, Guangzhou, 510642, Guangdong, China
| | - Hua Tian
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China; Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture, Guangzhou, 510642, Guangdong, China.
| | - Zhaowen Mo
- College of Agriculture, South China Agricultural University, Guangzhou, 510642, Guangdong, China; Scientific Observing and Experimental Station of Crop Cultivation in South China, Ministry of Agriculture, Guangzhou, 510642, Guangdong, China; Center for International Field Agriculture Research & Education, Ibaraki University, Ami, Ibaraki, 300-0393, Japan.
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81
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Watt C, Zhou G, McFawn LA, Li C. Fine mapping qGL2H, a major locus controlling grain length in barley (Hordeum vulgare L.). TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:2095-2103. [PMID: 32193568 PMCID: PMC7311499 DOI: 10.1007/s00122-020-03579-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Accepted: 03/12/2020] [Indexed: 05/08/2023]
Abstract
A major grain length QTL on chromosome 2H was fine mapped to a 140.9 Kb region containing three genes. Increasing yield is an important target for barley breeding programs. One approach to increase yield is by enhancing individual grain weights through the regulation of grain size. Fine mapping major grain size-related quantitative trait loci is necessary for future marker-assisted selection strategies, yet studies of this nature are limited in barley. In the present study, we utilised a doubled haploid population derived from two Australian malt barley varieties, Vlamingh and Buloke, coupled with extensive genotypic and phenotypic data from three independent environments. A major grain length locus identified on chromosome 2H designated qGL2H was fine mapped to a 140.9 Kb interval. qGL2H was able to account for 25.4% of the phenotypic variation for grain length and 10.2% for grain yield. Underlying qGL2H were three high-confidence predicted genes. One of these genes encodes a MYB transcription factor and represents a promising candidate for further genetic research.
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Affiliation(s)
- Calum Watt
- Western Barley Genetic Alliance, Murdoch University, Murdoch, WA, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA, Australia
| | - Gaofeng Zhou
- Western Barley Genetic Alliance, Murdoch University, Murdoch, WA, Australia
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA, Australia
| | - Lee-Anne McFawn
- Western Barley Genetic Alliance, Murdoch University, Murdoch, WA, Australia
- Department of Primary Industry and Regional Development, South Perth, WA, Australia
| | - Chengdao Li
- Western Barley Genetic Alliance, Murdoch University, Murdoch, WA, Australia.
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA, Australia.
- Department of Primary Industry and Regional Development, South Perth, WA, Australia.
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82
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Mayorga-Gómez A, Nambeesan SU. Temporal expression patterns of fruit-specific α- EXPANSINS during cell expansion in bell pepper (Capsicum annuum L.). BMC PLANT BIOLOGY 2020; 20:241. [PMID: 32466743 PMCID: PMC7254744 DOI: 10.1186/s12870-020-02452-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 05/19/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Expansins (EXPs) facilitate non-enzymatic cell wall loosening during several phases of plant growth and development including fruit growth, internode expansion, pollen tube growth, leaf and root development, and during abiotic stress responses. In this study, the spatial and temporal expression patterns of C. annuum α- EXPANSIN (CaEXPA) genes were characterized. Additionally, fruit-specific CaEXPA expression was correlated with the rate of cell expansion during bell pepper fruit development. RESULTS Spatial expression patterns revealed that CaEXPA13 was up-regulated in vegetative tissues and flowers, with the most abundant expression in mature leaves. Expression of CaEXPA4 was associated with stems and roots. CaEXPA3 was expressed abundantly in flower at anthesis suggesting a role for CaEXPA3 in flower development. Temporal expression analysis revealed that 9 out of the 21 genes were highly expressed during fruit development. Of these, expression of six genes, CaEXPA5, CaEXPA7, CaEXPA12, CaEXPA14 CaEXPA17 and CaEXPA19 were abundant 7 to 21 days after anthesis (DAA), whereas CaEXPA6 was strongly expressed between 14 and 28 DAA. Further, this study revealed that fruit growth and cell expansion occur throughout bell pepper development until ripening, with highest rates of fruit growth and cell expansion occurring between 7 and 14 DAA. The expression of CaEXPA14 and CaEXPA19 positively correlated with the rate of cell expansion, suggesting their role in post-mitotic cell expansion-mediated growth of the bell pepper fruit. In this study, a ripening specific EXP transcript, CaEXPA9 was identified, suggesting its role in cell wall disassembly during ripening. CONCLUSIONS This is the first genome-wide study of CaEXPA expression during fruit growth and development. Identification of fruit-specific EXPAs suggest their importance in facilitating cell expansion during growth and cell wall loosening during ripening in bell pepper. These EXPA genes could be important targets for future manipulation of fruit size and ripening characteristics.
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Affiliation(s)
- Andrés Mayorga-Gómez
- Department of Horticulture, University of Georgia, 120 Carlton Street, Athens, GA, 30602, USA
| | - Savithri U Nambeesan
- Department of Horticulture, University of Georgia, 120 Carlton Street, Athens, GA, 30602, USA.
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83
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Vishwakarma K, Singh VP, Prasad SM, Chauhan DK, Tripathi DK, Sharma S. Silicon and plant growth promoting rhizobacteria differentially regulate AgNP-induced toxicity in Brassica juncea: Implication of nitric oxide. JOURNAL OF HAZARDOUS MATERIALS 2020; 390:121806. [PMID: 32058900 DOI: 10.1016/j.jhazmat.2019.121806] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Revised: 11/04/2019] [Accepted: 11/30/2019] [Indexed: 05/24/2023]
Abstract
An emerging stress of nanomaterials in soil and water is of great concern as it limits crop productivity and affects humans as well. Therefore, it is required to manage this problem. Silicon and plant growth promoting rhizobacteria has gained the engaging role in agriculture as (bio-)fertilizers. However, their role against silver nanoparticles (AgNPs) is still not known. Hence, present study was envisaged to investigate role of Si, PGPR and phytohormone indole acetic acid (IAA) in regulating AgNP stress in Brassica juncea seedlings. The study highlighted the impact of various treatments with respect to overproduction of reactive oxygen species, signaling molecule nitric oxide, oxidative markers like antioxidant enzymes and nonenzymatic components of ascorbate-glutathione pathway. Interestingly, silicon when present with AgNPs enhanced toxicity by reducing growth and mechanistic properties of B. juncea. Moreover, the results highlight the role of PGPR and IAA towards reduction in toxicity by promoting the plant growth under stressed conditions. Treatments AgNP + Si + PGPR/IAA were observed to significantly reduce the stress and enhance plant growth against treatment AgNPs alone. This reversal in toxicity by PGPR and IAA along with Si suggests the idea to formulate and utilize their combination as biofertilizers for eradicating the stress in near future.
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Affiliation(s)
- Kanchan Vishwakarma
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, India
| | - Vijay Pratap Singh
- Plant Physiology Lab, Department of Botany, C.M.P. Degree College, A Constituent Post Graduate College of University of Allahabad, Prayagraj, 211002, India
| | - Sheo Mohan Prasad
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Allahabad, Prayagraj, 211002, India
| | - Devendra Kumar Chauhan
- D D Pant Interdisciplinary Research Lab, Department of Botany, University of Allahabad, Prayagraj, 211002, India
| | | | - Shivesh Sharma
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, India.
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84
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Semeradova H, Montesinos JC, Benkova E. All Roads Lead to Auxin: Post-translational Regulation of Auxin Transport by Multiple Hormonal Pathways. PLANT COMMUNICATIONS 2020; 1:100048. [PMID: 33367243 PMCID: PMC7747973 DOI: 10.1016/j.xplc.2020.100048] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 03/26/2020] [Accepted: 04/18/2020] [Indexed: 05/03/2023]
Abstract
Auxin is a key hormonal regulator, that governs plant growth and development in concert with other hormonal pathways. The unique feature of auxin is its polar, cell-to-cell transport that leads to the formation of local auxin maxima and gradients, which coordinate initiation and patterning of plant organs. The molecular machinery mediating polar auxin transport is one of the important points of interaction with other hormones. Multiple hormonal pathways converge at the regulation of auxin transport and form a regulatory network that integrates various developmental and environmental inputs to steer plant development. In this review, we discuss recent advances in understanding the mechanisms that underlie regulation of polar auxin transport by multiple hormonal pathways. Specifically, we focus on the post-translational mechanisms that contribute to fine-tuning of the abundance and polarity of auxin transporters at the plasma membrane and thereby enable rapid modification of the auxin flow to coordinate plant growth and development.
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Affiliation(s)
- Hana Semeradova
- Institute of Science and Technology Austria, 3400 Klosterneuburg, Austria
| | | | - Eva Benkova
- Institute of Science and Technology Austria, 3400 Klosterneuburg, Austria
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85
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Griesser M, Savoi S, Supapvanich S, Dobrev P, Vankova R, Forneck A. Phytohormone profiles are strongly altered during induction and symptom development of the physiological ripening disorder berry shrivel in grapevine. PLANT MOLECULAR BIOLOGY 2020; 103:141-157. [PMID: 32072393 PMCID: PMC7170833 DOI: 10.1007/s11103-020-00980-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 02/13/2020] [Indexed: 05/08/2023]
Abstract
The process of grape berry ripening follows three phases with distinct metabolic processes and complex regulations via phytohormones. The physiological ripening disorder berry shrivel (BS) is characterized by reduced sugar accumulation, low anthocyanin contents, and high acidity in affected berries. The processes leading to BS induction are unknown, but recent transcriptional data on reduced expression of switch genes hint towards a disturbed ripening onset. Herein we investigated the phytohormone composition throughout grape berry ripening in healthy and BS berries in Vitis vinifera L. cultivar Blauer Zweigelt. Thereby we hypothesize that phytohormones are key players for BS induction and suppress the expression of switch genes at veraison. The presented metabolomics and RNAseq data describe two distinct phytohormone profiles in BS berries, differing between pre- and post-veraison with a clear ethylene precursor (aminocyclopropane-1-carboxylic acid, ACC) peak before veraison. Exogenous application of ACC led to BS symptoms, while ethephone application led to berry abscission. During post-veraison, we observed high ABA-glucose ester (ABA-GE) and low indole-3-acetate aspartate (IAA-Asp) and isopentenyladenine (iP) contents in BS berries and the transcriptional induction of several phytohormone pathways. The presented descriptive data provide valuable knowledge to further decipher the role of phytohormones in BS induction and BS symptom development.
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Affiliation(s)
- Michaela Griesser
- Department of Crop Sciences, Institute of Viticulture and Pomology, University of Natural Resources and Life Sciences, Konrad Lorenz Straße 24, Tulln, 3430, Vienna, Austria.
| | - Stefania Savoi
- AGAP, Montpellier University, CIRAD, INRA, Montpellier SupAgro, 2 Place Pierre Viala, 34060, Montpellier, France
| | - Suriyan Supapvanich
- Department of Agricultural Education, Faculty of Industrial Education and Technology, King Mongkut's Institute of Technology Ladkrabang, 1 Chalongkrung Road, Ladkrabang, Bangkok, 10520, Thailand
| | - Petre Dobrev
- Institute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic
| | - Radomira Vankova
- Institute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic
| | - Astrid Forneck
- Department of Crop Sciences, Institute of Viticulture and Pomology, University of Natural Resources and Life Sciences, Konrad Lorenz Straße 24, Tulln, 3430, Vienna, Austria
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86
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DeMers LC, Redekar NR, Kachroo A, Tolin SA, Li S, Saghai Maroof MA. A transcriptional regulatory network of Rsv3-mediated extreme resistance against Soybean mosaic virus. PLoS One 2020; 15:e0231658. [PMID: 32315334 DOI: 10.1371/journal.pgen.0231658] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Accepted: 03/29/2020] [Indexed: 05/28/2023] Open
Abstract
Resistance genes are an effective means for disease control in plants. They predominantly function by inducing a hypersensitive reaction, which results in localized cell death restricting pathogen spread. Some resistance genes elicit an atypical response, termed extreme resistance, where resistance is not associated with a hypersensitive reaction and its standard defense responses. Unlike hypersensitive reaction, the molecular regulatory mechanism(s) underlying extreme resistance is largely unexplored. One of the few known, naturally occurring, instances of extreme resistance is resistance derived from the soybean Rsv3 gene, which confers resistance against the most virulent Soybean mosaic virus strains. To discern the regulatory mechanism underlying Rsv3-mediated extreme resistance, we generated a gene regulatory network using transcriptomic data from time course comparisons of Soybean mosaic virus-G7-inoculated resistant (L29, Rsv3-genotype) and susceptible (Williams82, rsv3-genotype) soybean cultivars. Our results show Rsv3 begins mounting a defense by 6 hpi via a complex phytohormone network, where abscisic acid, cytokinin, jasmonic acid, and salicylic acid pathways are suppressed. We identified putative regulatory interactions between transcription factors and genes in phytohormone regulatory pathways, which is consistent with the demonstrated involvement of these pathways in Rsv3-mediated resistance. One such transcription factor identified as a putative transcriptional regulator was MYC2 encoded by Glyma.07G051500. Known as a master regulator of abscisic acid and jasmonic acid signaling, MYC2 specifically recognizes the G-box motif ("CACGTG"), which was significantly enriched in our data among differentially expressed genes implicated in abscisic acid- and jasmonic acid-related activities. This suggests an important role for Glyma.07G051500 in abscisic acid- and jasmonic acid-derived defense signaling in Rsv3. Resultantly, the findings from our network offer insights into genes and biological pathways underlying the molecular defense mechanism of Rsv3-mediated extreme resistance against Soybean mosaic virus. The computational pipeline used to reconstruct the gene regulatory network in this study is freely available at https://github.com/LiLabAtVT/rsv3-network.
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Affiliation(s)
- Lindsay C DeMers
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Neelam R Redekar
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Aardra Kachroo
- Department of Plant Pathology, University of Kentucky, Lexington, Virginia, United States of America
| | - Sue A Tolin
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - Song Li
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
| | - M A Saghai Maroof
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America
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87
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Dong Y, Gao M, Song Z, Qiu W. Microplastic particles increase arsenic toxicity to rice seedlings. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 259:113892. [PMID: 31931412 DOI: 10.1016/j.envpol.2019.113892] [Citation(s) in RCA: 185] [Impact Index Per Article: 46.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 12/23/2019] [Accepted: 12/27/2019] [Indexed: 05/06/2023]
Abstract
Hydroponic experiments were conducted to study the effects of microplastic particles of polystyrene (PS) and polytetrafluoroethylene (PTFE) on arsenic (As) content in leaves and roots of rice seedlings, and the changes in root vigor and physiological and biochemical indicators under single or combined PS and PTFE with As(III) treatment. Rice biomass decreased with increasing concentrations of PS, PTFE, and As(III) in the growth medium. The highest root (leaf) biomass decreases were 21.4% (10.2%), 25.4% (11.8%), and 26.2% (16.2%) with the addition of 0.2 g L-1 PS, 0.2 g L-1 PTFE, and 4 mg L-1 As(III), respectively. Microplastic particles and As(III) inhibited biomass accumulation by inhibiting root activity and RuBisCO activity, respectively. The addition of As(III) and microplastic particles (PS or PTFE) inhibited photosynthesis through non-stomatal and stomatal factors, respectively; furthermore, net photosynthetic rate, chlorophyll fluorescence, and the Chl a content of rice were reduced with the addition of As(III) and microplastic particles (PS or PTFE). Microplastic particles and As(III) induced an oxidative burst in rice tissues through mechanical damage and destruction of the tertiary structure of antioxidant enzymes, respectively, thereby increasing O2- and H2O2 in roots and leaves, inducing lipid peroxidation, and destroying cell membranes. When PS and PTFE were added at 0.04 and 0.1 g L-1, respectively, the negative effects of As(III) on rice were reduced. Treatment with 0.2 g L-1 PS or PTFE, combined with As(III), had a higher impact on rice than the application of As(III) alone. PS and PTFE reduced As(III) uptake, and absorbed As decreased with the increasing concentration of microparticles. The underlying mechanisms for these effects may involve direct adsorption of As, competition between As and microplastic particles for adsorption sites on the root surface, and inhibition of root activity by microplastic particles.
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Affiliation(s)
- Youming Dong
- Agro-Environmental Protection Institute, Ministry of Agriculture of China, Tianjin, 300191, China
| | - Minling Gao
- Department of Civil and Environmental Engineering, Shantou University, Shantou, 515063, China
| | - Zhengguo Song
- Department of Civil and Environmental Engineering, Shantou University, Shantou, 515063, China.
| | - Weiwen Qiu
- The New Zealand Institute for Plant and Food Research Limited, Private Bag 4704, Christchurch, 8140, New Zealand
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88
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Harkness C, Semenov MA, Areal F, Senapati N, Trnka M, Balek J, Bishop J. Adverse weather conditions for UK wheat production under climate change. AGRICULTURAL AND FOREST METEOROLOGY 2020; 282-283:107862. [PMID: 32184532 PMCID: PMC7001962 DOI: 10.1016/j.agrformet.2019.107862] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 11/20/2019] [Accepted: 11/27/2019] [Indexed: 05/27/2023]
Abstract
Winter wheat is an important crop in the UK, suited to the typical weather conditions in the current climate. In a changing climate the increased frequency and severity of adverse weather events, which are often localised, are considered a major threat to wheat production. In the present study we assessed a range of adverse weather conditions, which can significantly affect yield, under current and future climates based on adverse weather indices. We analysed changes in the frequency, magnitude and spatial patterns of 10 adverse weather indices, at 25 sites across the UK, using climate scenarios from the CMIP5 ensemble of global climate models (GCMs) and two greenhouse gas emissions (RCP4.5 and RCP8.5). The future UK climate is expected to remain favourable for wheat production, with most adverse weather indicators reducing in magnitude by the mid-21st century. Hotter and drier summers would improve sowing and harvesting conditions and reduce the risk of lodging. The probability of late frosts and heat stress during reproductive and grain filling periods would likely remain small in 2050. Wetter winter and spring could cause issues with waterlogging. The severity of drought stress during reproduction would generally be lower in 2050, however localised differences suggest it is important to examine drought at a small spatial scale. Prolonged water stress does not increase considerably in the UK, as may be expected in other parts of Europe. Climate projections based on the CMIP5 ensemble reveal considerable uncertainty in the magnitude of adverse weather conditions including waterlogging, drought and water stress. The variation in adverse weather conditions due to GCMs was generally greater than between emissions scenarios. Accordingly, CMIP5 ensembles should be used in the assessment of adverse weather conditions for crop production to indicate the full range of possible impacts, which a limited number of GCMs may not provide.
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Affiliation(s)
- Caroline Harkness
- School of Agriculture Policy and Development, University of Reading, Earley Gate, Reading RG6 6AH, United Kingdom
- Sustainable Agricultural Sciences, Rothamsted Research, West Common, Harpenden, Hertfordshire AL5 2JQ, United Kingdom
| | - Mikhail A. Semenov
- Department of Plant Sciences, Rothamsted Research, West Common, Harpenden, Hertfordshire AL5 2JQ, United Kingdom
| | - Francisco Areal
- Centre for Rural Economy, School of Natural and Environmental Sciences, Newcastle University, Agriculture Building, King's Road, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - Nimai Senapati
- Department of Plant Sciences, Rothamsted Research, West Common, Harpenden, Hertfordshire AL5 2JQ, United Kingdom
| | - Miroslav Trnka
- Global Change Research Institute (CzechGlobe), Academy of Sciences of the Czech Republic, Bělidla 986/4, 603 00 Brno, Czech Republic
- Mendel University in Brno, Zemědělská 1, Brno 613 00, Czech Republic
| | - Jan Balek
- Global Change Research Institute (CzechGlobe), Academy of Sciences of the Czech Republic, Bělidla 986/4, 603 00 Brno, Czech Republic
- Mendel University in Brno, Zemědělská 1, Brno 613 00, Czech Republic
| | - Jacob Bishop
- School of Agriculture Policy and Development, University of Reading, Earley Gate, Reading RG6 6AH, United Kingdom
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Batista-Silva W, da Fonseca-Pereira P, Martins AO, Zsögön A, Nunes-Nesi A, Araújo WL. Engineering Improved Photosynthesis in the Era of Synthetic Biology. PLANT COMMUNICATIONS 2020; 1:100032. [PMID: 33367233 PMCID: PMC7747996 DOI: 10.1016/j.xplc.2020.100032] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Revised: 01/20/2020] [Accepted: 02/08/2020] [Indexed: 05/08/2023]
Abstract
Much attention has been given to the enhancement of photosynthesis as a strategy for the optimization of crop productivity. As traditional plant breeding is most likely reaching a plateau, there is a timely need to accelerate improvements in photosynthetic efficiency by means of novel tools and biotechnological solutions. The emerging field of synthetic biology offers the potential for building completely novel pathways in predictable directions and, thus, addresses the global requirements for higher yields expected to occur in the 21st century. Here, we discuss recent advances and current challenges of engineering improved photosynthesis in the era of synthetic biology toward optimized utilization of solar energy and carbon sources to optimize the production of food, fiber, and fuel.
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Affiliation(s)
- Willian Batista-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais 36570-900, Brazil
| | - Paula da Fonseca-Pereira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais 36570-900, Brazil
| | | | - Agustín Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais 36570-900, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais 36570-900, Brazil
| | - Wagner L. Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais 36570-900, Brazil
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90
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Li Y, Wei K. Comparative functional genomics analysis of cytochrome P450 gene superfamily in wheat and maize. BMC PLANT BIOLOGY 2020; 20:93. [PMID: 32122306 PMCID: PMC7052972 DOI: 10.1186/s12870-020-2288-7] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Accepted: 02/12/2020] [Indexed: 05/22/2023]
Abstract
BACKGROUND The cytochrome P450s (CYP450s) as the largest enzyme family of plant metabolism participate in various physiological processes, whereas no study has demonstrated interest in comprehensive comparison of the genes in wheat and maize. Genome-wide survey, characterization and comparison of wheat and maize CYP450 gene superfamily are useful for genetic manipulation of the Gramineae crops. RESULTS In total, 1285 and 263 full-length CYP450s were identified in wheat and maize, respectively. According to standard nomenclature, wheat CYP450s (TaCYP450s) were categorized into 45 families, while maize CYP450s (ZmCYP450s) into 43 families. A comprehensive analysis of wheat and maize CYP450s, involved in functional domains, conserved motifs, phylogeny, gene structures, chromosome locations and duplicated events was performed. The result showed that each family/subfamily in both species exhibited characteristic features, suggesting their phylogenetic relationship and the potential divergence in their functions. Functional divergence analysis at the amino acid level of representative clans CYP51, CYP74 and CYP97 in wheat, maize and rice identified some critical amino acid sites that are responsible for functional divergence of a gene family. Expression profiles of Ta-, ZmCYP450s were investigated using RNA-seq data, which contribute to infer the potential functions of the genes during development and stress responses. We found in both species CYP450s had preferential expression in specific tissues, and many tissue-specific genes were identified. Under water-deficit condition, 82 and 39 significantly differentially expressed CYP450s were respectively detected in wheat and maize. These genes may have some roles in protecting plants against drought damage. Thereinto, fourteen CYP450s were selected to validate their expression level through qRT-PCR. To further elucidating molecular mechanisms of CYP450 action, gene co-expression network was constructed. In total, 477 TaCYP450s were distributed in 22 co-expression modules, and some co-expressed genes that likely take part in the same biochemical pathway were identified. For instance, the expression of TaCYP74A98_4D was highly correlated with TaLOX9, TaLOX36, TaLOX39, TaLOX44 and TaOPR8, and all of them may be involved in jasmonate (JA) biosynthesis. TaCYP73A201_3A showed coexpression with TaPAL1.25, TaCCoAOMT1.2, TaCOMT.1, TaCCR1.6 and TaLAC5, which probably act in the wheat stem and/or root lignin synthesis pathway. CONCLUSION Our study first established systematic information about evolutionary relationship, expression pattern and function characterization of CYP450s in wheat and maize.
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Affiliation(s)
- Yixuan Li
- School of Biological Sciences and Biotechnology, Minnan Normal University, 36 Xian-Qian-Zhi Street, Zhangzhou, 363000, Fujian, China
| | - Kaifa Wei
- School of Biological Sciences and Biotechnology, Minnan Normal University, 36 Xian-Qian-Zhi Street, Zhangzhou, 363000, Fujian, China.
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91
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Sharma A, Soares C, Sousa B, Martins M, Kumar V, Shahzad B, Sidhu GPS, Bali AS, Asgher M, Bhardwaj R, Thukral AK, Fidalgo F, Zheng B. Nitric oxide-mediated regulation of oxidative stress in plants under metal stress: a review on molecular and biochemical aspects. PHYSIOLOGIA PLANTARUM 2020; 168:318-344. [PMID: 31240720 DOI: 10.1111/ppl.13004] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 06/17/2019] [Accepted: 06/24/2019] [Indexed: 05/07/2023]
Abstract
Given their sessile nature, plants continuously face unfavorable conditions throughout their life cycle, including water scarcity, extreme temperatures and soil pollution. Among all, metal(loid)s are one of the main classes of contaminants worldwide, posing a serious threat to plant growth and development. When in excess, metals which include both essential and non-essential elements, quickly become phytotoxic, inducing the occurrence of oxidative stress. In this way, in order to ensure food production and safety, attempts to enhance plant tolerance to metal(loid)s are urgently needed. Nitric oxide (NO) is recognized as a signaling molecule, highly involved in multiple physiological events, like the response of plants to abiotic stress. Thus, substantial efforts have been made to assess NO potential in alleviating metal-induced oxidative stress in plants. In this review, an updated overview of NO-mediated protection against metal toxicity is provided. After carefully reviewing NO biosynthetic pathways, focus was given to the interaction between NO and the redox homeostasis followed by photosynthetic performance of plants under metal excess.
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Affiliation(s)
- Anket Sharma
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
| | - Cristiano Soares
- GreenUPorto - Sustainable Agrifood Production Research Centre, Biology Department, Faculty of Sciences of University of Porto, Porto, 4169-007, Portugal
| | - Bruno Sousa
- GreenUPorto - Sustainable Agrifood Production Research Centre, Biology Department, Faculty of Sciences of University of Porto, Porto, 4169-007, Portugal
| | - Maria Martins
- GreenUPorto - Sustainable Agrifood Production Research Centre, Biology Department, Faculty of Sciences of University of Porto, Porto, 4169-007, Portugal
| | - Vinod Kumar
- Department of Botany, DAV University, Jalandhar, 144012, India
| | - Babar Shahzad
- School of Land and Food, University of Tasmania, Hobart, TAS, Australia
| | - Gagan P S Sidhu
- Department of Environment Education, Government College of Commerce and Business Administration, Chandigarh, 160047, India
| | - Aditi S Bali
- Department of Botany, M.C.M.D.A.V. College for Women, Chandigarh, India
| | - Mohd Asgher
- Plant Physiology and Biochemistry Laboratory, Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, 185234, India
| | - Renu Bhardwaj
- Plant Stress Physiology Laboratory, Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, India
| | - Ashwani K Thukral
- Plant Stress Physiology Laboratory, Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, India
| | - Fernanda Fidalgo
- GreenUPorto - Sustainable Agrifood Production Research Centre, Biology Department, Faculty of Sciences of University of Porto, Porto, 4169-007, Portugal
| | - Bingsong Zheng
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, China
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92
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Kataria S, Jain M, Tripathi DK, Singh VP. Involvement of nitrate reductase-dependent nitric oxide production in magnetopriming-induced salt tolerance in soybean. PHYSIOLOGIA PLANTARUM 2020; 168:422-436. [PMID: 31600405 DOI: 10.1111/ppl.13031] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 09/05/2019] [Accepted: 10/02/2019] [Indexed: 05/27/2023]
Abstract
In the present study, experiments were performed to investigate the role of nitric oxide (NO) in magnetopriming-induced seed germination and early growth characteristics of soybean (Glycine max) seedlings under salt stress. The NO donor (sodium nitroprusside, SNP), NO scavenger (2-[4-carboxyphenyl]-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide, CPTIO), inhibitors of nitrate reductase (sodium tungstate, ST) or NO synthase (N-nitro-L-Arg-methyl ester, LNAME) and NADPH oxidase inhibitor (diphenylene iodonium, DPI) have been used to measure the role of NO in the alleviation of salinity stress by static magnetic field (SMF of 200 mT, 1 h). Salt stress (50 mM NaCl) significantly reduced germination and early growth of seedlings emerged from non-primed seeds. Pre-treatment of seeds with SMF positively stimulated the germination and consequently promoted the seedling growth. ST, LNAME, CPTIO and DPI significantly decreased the growth of seedling, activities of α-amylase, protease and nitrate reductase (NR), hydrogen peroxide (H2 O2 ), superoxide (O2 •- ) and NO content in roots of seedlings emerged from non-primed and SMF-primed seeds. However, the extent of reduction was higher with ST in seedlings of SMF-primed seeds under both conditions, whereas SNP promoted all the studied parameters. Moreover, the generation of NO was also confirmed microscopically using a membrane permanent fluorochrome (4-5-diaminofluorescein diacetate [DAF-2 DA]). Further, analysis showed that SMF enhanced the NR activity and triggered the NO production and NR was maximally decreased by ST as compared to LNAME, CPTIO and DPI. Thus, in addition to ROS, NO might be one of the important signaling molecules in magnetopriming-induced salt tolerance in soybean and NR may be responsible for SMF-triggered NO generation in roots of soybean.
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Affiliation(s)
- Sunita Kataria
- School of Biochemistry, Devi Ahilya Vishwavidyalaya, Khandwa Road, Indore, M.P, 452001, India
| | - Meeta Jain
- School of Biochemistry, Devi Ahilya Vishwavidyalaya, Khandwa Road, Indore, M.P, 452001, India
| | - Durgesh K Tripathi
- Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, I 2 Block, 5th Floor, AUUP Campus Sector 125, Noida, 201313, India
| | - Vijay P Singh
- Plant Physiology Lab, Department of Botany, C.M.P. Degree College, A Constituent Post Graduate College of University of Allahabad, Prayagraj, 211002, India
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93
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Wang Y, Bo K, Gu X, Pan J, Li Y, Chen J, Wen C, Ren Z, Ren H, Chen X, Grumet R, Weng Y. Molecularly tagged genes and quantitative trait loci in cucumber with recommendations for QTL nomenclature. HORTICULTURE RESEARCH 2020; 7:3. [PMID: 31908806 PMCID: PMC6938495 DOI: 10.1038/s41438-019-0226-3] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2019] [Revised: 10/05/2019] [Accepted: 11/08/2019] [Indexed: 05/06/2023]
Abstract
Cucumber, Cucumis sativus L. (2n = 2x = 14), is an important vegetable crop worldwide. It was the first specialty crop with a publicly available draft genome. Its relatively small, diploid genome, short life cycle, and self-compatible mating system offers advantages for genetic studies. In recent years, significant progress has been made in molecular mapping, and identification of genes and QTL responsible for key phenotypic traits, but a systematic review of the work is lacking. Here, we conducted an extensive literature review on mutants, genes and QTL that have been molecularly mapped or characterized in cucumber. We documented 81 simply inherited trait genes or major-effect QTL that have been cloned or fine mapped. For each gene, detailed information was compiled including chromosome locations, allelic variants and associated polymorphisms, predicted functions, and diagnostic markers that could be used for marker-assisted selection in cucumber breeding. We also documented 322 QTL for 42 quantitative traits, including 109 for disease resistances against seven pathogens. By alignment of these QTL on the latest version of cucumber draft genomes, consensus QTL across multiple studies were inferred, which provided insights into heritable correlations among different traits. Through collaborative efforts among public and private cucumber researchers, we identified 130 quantitative traits and developed a set of recommendations for QTL nomenclature in cucumber. This is the first attempt to systematically summarize, analyze and inventory cucumber mutants, cloned or mapped genes and QTL, which should be a useful resource for the cucurbit research community.
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Affiliation(s)
- Yuhui Wang
- Department of Horticulture, University of Wisconsin, Madison, WI 53706 USA
| | - Kailiang Bo
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Xingfang Gu
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Junsong Pan
- Department of Plant Sciences, Shanghai Jiaotong University, Shanghai, 200240 China
| | - Yuhong Li
- Horticulture College, Northwest A&F University, Yangling, 712100 China
| | - Jinfeng Chen
- Horticulture College, Nanjing Agricultural University, Nanjing, 210095 China
| | - Changlong Wen
- Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Sciences, Beijing, 100097 China
| | - Zhonghai Ren
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an, 271018 China
| | - Huazhong Ren
- College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Xuehao Chen
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009 China
| | - Rebecca Grumet
- Department of Horticulture, Michigan State University, East Lansing, MI 48824 USA
| | - Yiqun Weng
- Department of Horticulture, University of Wisconsin, Madison, WI 53706 USA
- USDA-ARS Vegetable Crops Research Unit, 1575 Linden Dr., Madison, WI 53706 USA
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Karupannan SK, Dowlath MJH, Arunachalam KD. Phytonanotechnology: Challenges and future perspectives. PHYTONANOTECHNOLOGY 2020:303-322. [DOI: 10.1016/b978-0-12-822348-2.00015-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
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95
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Rizvi A, Zaidi A, Ameen F, Ahmed B, AlKahtani MDF, Khan MS. Heavy metal induced stress on wheat: phytotoxicity and microbiological management. RSC Adv 2020; 10:38379-38403. [PMID: 35693041 PMCID: PMC9121104 DOI: 10.1039/d0ra05610c] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Accepted: 09/17/2020] [Indexed: 11/21/2022] Open
Abstract
Among many soil problems, heavy metal accumulation is one of the major agronomic challenges that has seriously threatened food safety. Due to these problems, soil biologists/agronomists in recent times have also raised concerns over heavy metal pollution, which indeed are unpleasantly affecting agro-ecosystems and crop production. The toxic heavy metals once deposited beyond certain permissible limits, obnoxiously affect the density, composition and physiological activities of microbiota, dynamics and fertility of soil leading eventually to reduction in wheat production and via food chain, human and animal health. Therefore, the metal induced phytotoxicity problems warrant urgent and immediate attention so that the physiological activities of microbes, nutrient pool of soils and concurrently the production of wheat are preserved and maintained in a constantly deteriorating environment. To mitigate the magnitude of metal induced changes, certain microorganisms have been identified, especially those belonging to the plant growth promoting rhizobacteria (PGPR) group endowed with the distinctive property of heavy metal tolerance and exhibiting unique plant growth promoting potentials. When applied, such metal-tolerant PGPR have shown variable positive impact on wheat production, even in soils contaminated with metals, by supplying macro and micro nutrients and secreting active biomolecules like EPS, melanins and metallothionein (MTs). Despite some reports here and there, the phytotoxicity of metals to wheat and how wheat production in metal-stressed soil can be enhanced is poorly explained. Thus, an attempt is made in this review to better understand the mechanistic basis of metal toxicity to wheat, and how such phytotoxicity can be mitigated by incorporating microbiological remediation strategies in wheat cultivation practices. The information provided here is likely to benefit wheat growers and consequently optimize wheat production inexpensively under stressed soils. Among many soil problems, heavy metal accumulation is one of the major agronomic challenges that has seriously threatened food safety.![]()
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Affiliation(s)
- Asfa Rizvi
- Department of Agricultural Microbiology
- Faculty of Agricultural Sciences
- Aligarh Muslim University
- Aligarh
- India
| | - Almas Zaidi
- Department of Agricultural Microbiology
- Faculty of Agricultural Sciences
- Aligarh Muslim University
- Aligarh
- India
| | - Fuad Ameen
- Department of Botany and Microbiology
- College of Science
- King Saud University
- Riyadh 11451
- Saudi Arabia
| | - Bilal Ahmed
- Department of Agricultural Microbiology
- Faculty of Agricultural Sciences
- Aligarh Muslim University
- Aligarh
- India
| | - Muneera D. F. AlKahtani
- Department of Biology
- College of Science
- Princess Nourah Bint Abdulrahman University
- Riyadh
- Saudi Arabia
| | - Mohd. Saghir Khan
- Department of Agricultural Microbiology
- Faculty of Agricultural Sciences
- Aligarh Muslim University
- Aligarh
- India
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96
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Liu M, Gong J, Yang B, Ding Y, Zhang Z, Wang B, Zhu C, Hou X. Differences in the photosynthetic and physiological responses of Leymus chinensis to different levels of grazing intensity. BMC PLANT BIOLOGY 2019; 19:558. [PMID: 31842774 PMCID: PMC6916219 DOI: 10.1186/s12870-019-2184-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 12/03/2019] [Indexed: 05/14/2023]
Abstract
BACKGROUND Grazing is an important land use in northern China. In general, different grazing intensities had a different impact on the morphological and physiological traits of plants, and especially their photosynthetic capacity. We investigated the responses of Leymus chinensis to light, medium, and heavy grazing intensities in comparison with a grazing exclusion control. RESULTS With light grazing, L. chinensis showed decreased photosynthetic capacity. The low chlorophyll and carotenoid contents constrained light energy transformation and dissipation, and Rubisco activity was also low, restricting the carboxylation efficiency. In addition, the damaged photosynthetic apparatus accumulated reactive oxygen species (ROS). With medium grazing, more energy was used for thermal dissipation, with high carotene content and high non-photochemical quenching, whereas photosynthetic electron transport was lowest. Significantly decreased photosynthesis decreased leaf C contents. Plants decreased the risk caused by ROS through increased energy dissipation. With high grazing intensity, plants changed their strategy to improve survival through photosynthetic compensation. More energy was allocated to photosynthetic electron transport. Though heavy grazing damaged the chloroplast ultrastructure, adjustment of internal mechanisms increased compensatory photosynthesis, and an increased tiller number facilitated regrowth after grazing. CONCLUSIONS Overall, the plants adopted different strategies by adjusting their metabolism and growth in response to their changing environment.
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Affiliation(s)
- Min Liu
- Beijing Key Laboratory of Traditional Chinese Medicine Protection and Utilization, Key Laboratory of Surface Processes and Resource Ecology, College of Resources Science and Technology, Faculty of Geographical Science, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875 China
- Key Laboratory of Tourism and Resources, Environment in Taishan University, Taian, 271021 China
| | - Jirui Gong
- Beijing Key Laboratory of Traditional Chinese Medicine Protection and Utilization, Key Laboratory of Surface Processes and Resource Ecology, College of Resources Science and Technology, Faculty of Geographical Science, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875 China
| | - Bo Yang
- Beijing Key Laboratory of Traditional Chinese Medicine Protection and Utilization, Key Laboratory of Surface Processes and Resource Ecology, College of Resources Science and Technology, Faculty of Geographical Science, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875 China
| | - Yong Ding
- Grassland Research Institute of Chinese Academic of Agricultural Science, Hohhot, 010021 Inner Mongolia China
| | - Zihe Zhang
- Beijing Key Laboratory of Traditional Chinese Medicine Protection and Utilization, Key Laboratory of Surface Processes and Resource Ecology, College of Resources Science and Technology, Faculty of Geographical Science, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875 China
| | - Biao Wang
- Beijing Key Laboratory of Traditional Chinese Medicine Protection and Utilization, Key Laboratory of Surface Processes and Resource Ecology, College of Resources Science and Technology, Faculty of Geographical Science, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875 China
| | - Chenchen Zhu
- Beijing Key Laboratory of Traditional Chinese Medicine Protection and Utilization, Key Laboratory of Surface Processes and Resource Ecology, College of Resources Science and Technology, Faculty of Geographical Science, Beijing Normal University, No. 19 Xinjiekouwai Street, Beijing, 100875 China
| | - Xiangyang Hou
- Grassland Research Institute of Chinese Academic of Agricultural Science, Hohhot, 010021 Inner Mongolia China
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Ulhassan Z, Huang Q, Gill RA, Ali S, Mwamba TM, Ali B, Hina F, Zhou W. Protective mechanisms of melatonin against selenium toxicity in Brassica napus: insights into physiological traits, thiol biosynthesis and antioxidant machinery. BMC PLANT BIOLOGY 2019; 19:507. [PMID: 31752690 PMCID: PMC6869276 DOI: 10.1186/s12870-019-2110-6] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Accepted: 10/31/2019] [Indexed: 05/03/2023]
Abstract
BACKGROUND The ubiquitous signaling molecule melatonin (N-acetyl-5-methoxytryptamine) (MT) plays vital roles in plant development and stress tolerance. Selenium (Se) may be phytotoxic at high concentrations. Interactions between MT and Se (IV) stress in higher plants are poorly understood. The aim of this study was to evaluate the defensive roles of exogenous MT (0 μM, 50 μM, and 100 μM) against Se (IV) (0 μM, 50 μM, 100 μM, and 200 μM) stress based on the physiological and biochemical properties, thiol biosynthesis, and antioxidant system of Brassica napus plants subjected to these treatments. RESULTS Se (IV) stress inhibited B. napus growth and biomass accumulation, reduced pigment content, and lowered net photosynthetic rate (Pn) and PSII photochemical efficiency (Fv/Fm) in a dose-dependent manner. All of the aforementioned responses were effectively alleviated by exogenous MT treatment. Exogenous MT mitigated oxidative damage and lipid peroxidation and protected the plasma membranes from Se toxicity by reducing Se-induced reactive oxygen species (ROS) accumulation. MT also alleviated osmotic stress by restoring foliar water and sugar levels. Relative to standalone Se treatment, the combination of MT and Se upregulated the ROS-detoxifying enzymes SOD, APX, GR, and CAT, increased proline, free amino acids, and the thiol components GSH, GSSG, GSH/GSSG, NPTs, PCs, and cys and upregulated the metabolic enzymes γ-ECS, GST, and PCS. Therefore, MT application attenuates Se-induce oxidative damage in plants. MT promotes the accumulation of chelating agents in the roots, detoxifies Se there, and impedes its further translocation to the leaves. CONCLUSIONS Exogenous MT improves the physiological traits, antioxidant system, and thiol ligand biosynthesis in B. napus subjected to Se stress primarily by enhancing Se detoxification and sequestration especially at the root level. Our results reveal better understanding of Se-phytotoxicity and Se-stress alleviation by the adequate supply of MT. The mechanisms of MT-induced plant tolerance to Se stress have potential implications in developing novel strategies for safe crop production in Se-rich soils.
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Affiliation(s)
- Zaid Ulhassan
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China
| | - Qian Huang
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China
| | - Rafaqat Ali Gill
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, China.
| | - Skhawat Ali
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China
| | - Theodore Mulembo Mwamba
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China
| | - Basharat Ali
- Department of Agronomy, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Faiza Hina
- Lab of Systematic & Evolutionary Botany and Biodiversity, College of Life Science, Zhejiang University, Hangzhou, 310058, China
| | - Weijun Zhou
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China.
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Song Y, Chen S, Wang X, Zhang R, Tu L, Hu T, Liu X, Zhang Y, Huang L, Gao W. A novel strategy to enhance terpenoids production using cambial meristematic cells of Tripterygium wilfordii Hook. f. PLANT METHODS 2019; 15:129. [PMID: 31719835 PMCID: PMC6836502 DOI: 10.1186/s13007-019-0513-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2019] [Accepted: 10/29/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND Tripterygium wilfordii Hook. f. (T. wilfordii) is an important medicinal plant with anti-inflammatory, immunosuppressive and anti-tumor activities. The main bioactive ingredients are diterpenoids and triterpenoids, such as triptolide, triptophenolide and celastrol. However, the production of terpenoids from original plants, hairy roots and dedifferentiated cells (DDCs) are not satisfactory for clinical applications. To find a new way to further improve the production of terpenoids, we established a new culture system of cambial meristematic cells (CMCs) with stem cell-like properties, which had strong vigor and high efficiency to produce large amounts of terpenoids of T. wilfordii. RESULTS CMCs of T. wilfordii were isolated and cultured for the first time. CMCs were characterized consistent with stem cell identities based on their physiological and molecular analysis, including morphology of CMCs, hypersensitivity to zeocin, thin cell wall and orthogonal partial least square-discriminant analysis, combination of transcriptional data analysis. After induction with methyl jasmonate (MJ), the maximal production of triptolide, celastrol and triptophenolide in CMCs was 312%, 400% and 327% higher than that of control group, respectively. As for medium, MJ-induced CMCs secreted 231% triptolide and 130% triptophenolide at the maximum level into medium higher than that of control group. Maximal celastrol production of induced CMCs medium was 48% lower than that of control group. Long-term induction significantly enhanced the production of terpenoids both in cells and medium. The reason for increasing the yield of terpenoids was that expression levels of 1-deoxy-d-xylulose-5-phosphate synthase (DXS), 1-deoxy-d-xylulose-5-phosphate reductoisomerase (DXR) and hydroxymethylglutaryl-CoA synthase (HMGS) were upregulated in CMCs after induction. CONCLUSIONS For the first time, CMCs of T. wilfordii were isolated, cultured, characterized and applied. Considering the significant enrichment of terpenoids in CMCs of T. wilfordii, CMCs could provide an efficient and controllable platform for sustainable production of terpenoids, which can be a better choice than DDCs.
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Affiliation(s)
- Yadi Song
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Shang Chen
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Xiujuan Wang
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Rui Zhang
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Lichan Tu
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Tianyuan Hu
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Xihong Liu
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Yifeng Zhang
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
| | - Luqi Huang
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700 China
| | - Wei Gao
- School of Traditional Chinese Medicine, Capital Medical University, Beijing, 100069 China
- School of Pharmaceutical Sciences, Capital Medical University, Beijing, 100069 China
- Advanced Innovation Center for Human Brain Protection, Capital Medical University, Beijing, 100069 China
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99
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Sabbione A, Daurelio L, Vegetti A, Talón M, Tadeo F, Dotto M. Genome-wide analysis of AGO, DCL and RDR gene families reveals RNA-directed DNA methylation is involved in fruit abscission in Citrus sinensis. BMC PLANT BIOLOGY 2019; 19:401. [PMID: 31510935 PMCID: PMC6739940 DOI: 10.1186/s12870-019-1998-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 08/29/2019] [Indexed: 05/08/2023]
Abstract
BACKGROUND Small RNAs regulate a wide variety of processes in plants, from organ development to both biotic and abiotic stress response. Being master regulators in genetic networks, their biogenesis and action is a fundamental aspect to characterize in order to understand plant growth and development. Three main gene families are critical components of RNA silencing: DICER-LIKE (DCL), ARGONAUTE (AGO) and RNA-DEPENDENT RNA POLYMERASE (RDR). Even though they have been characterized in other plant species, there is no information about these gene families in Citrus sinensis, one of the most important fruit species from both economical and nutritional reasons. While small RNAs have been implicated in the regulation of multiple aspects of plant growth and development, their role in the abscission process has not been characterized yet. RESULTS Using genome-wide analysis and a phylogenetic approach, we identified a total of 13 AGO, 5 DCL and 7 RDR genes. We characterized their expression patterns in root, leaf, flesh, peel and embryo samples using RNA-seq data. Moreover, we studied their role in fruit abscission through gene expression analysis in fruit rind compared to abscission zone from samples obtained by laser capture microdissection. Interestingly, we determined that the expression of several RNA silencing factors are down-regulated in fruit abscission zone, being particularly represented gene components of the RNA-dependent DNA Methylation pathway, indicating that repression of this process is necessary for fruit abscission to take place in Citrus sinensis. CONCLUSIONS The members of these 3 families present characteristic conserved domains and distinct expression patterns. We provide a detailed analysis of the members of these families and improved the annotation of some of these genes based on RNA-seq data. Our data suggests that the RNA-dependent DNA Methylation pathway is involved in the important fruit abscission process in C. sinensis.
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Affiliation(s)
- Agustín Sabbione
- Facultad de Ciencias Agrarias, Universidad Nacional del Litoral, Esperanza, Argentina
- Laboratorio de Investigaciones en Fisiología y Biología Molecular Vegetal (LIFiBVe), Cátedra de Fisiología Vegetal, Facultad de Ciencias Agrarias, Universidad Nacional del Litoral, Esperanza, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - Lucas Daurelio
- Laboratorio de Investigaciones en Fisiología y Biología Molecular Vegetal (LIFiBVe), Cátedra de Fisiología Vegetal, Facultad de Ciencias Agrarias, Universidad Nacional del Litoral, Esperanza, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - Abelardo Vegetti
- Facultad de Ciencias Agrarias, Universidad Nacional del Litoral, Esperanza, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - Manuel Talón
- Centre de Genómica, Institut Valencià d’Investigacions Agràries (IVIA), Montcada, València, Spain
| | - Francisco Tadeo
- Centre de Genómica, Institut Valencià d’Investigacions Agràries (IVIA), Montcada, València, Spain
| | - Marcela Dotto
- Facultad de Ciencias Agrarias, Universidad Nacional del Litoral, Esperanza, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
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100
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Grinevich DO, Desai JS, Stroup KP, Duan J, Slabaugh E, Doherty CJ. Novel transcriptional responses to heat revealed by turning up the heat at night. PLANT MOLECULAR BIOLOGY 2019; 101:1-19. [PMID: 31062216 PMCID: PMC6695350 DOI: 10.1007/s11103-019-00873-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Accepted: 04/11/2019] [Indexed: 05/29/2023]
Abstract
KEY MESSAGE The circadian clock controls many molecular activities, impacting experimental interpretation. We quantify the genome-wide effects of time-of-day on the heat-shock response and the effects of "diurnal bias" in stress experiments. Heat stress has significant adverse effects on plant productivity worldwide. Most experiments examining heat stress are performed during daytime hours, generating a 'diurnal bias' in the pathways and regulatory mechanisms identified. Such bias may confound downstream interpretations and limit our understanding of the full response to heat stress. Here we show that the transcriptional and physiological responses to a sudden heat shock in Arabidopsis are profoundly sensitive to the time of day. We observe that plant tolerance and acclimation to heat shock vary throughout the day and are maximal at dusk. Consistently, over 75% of heat-responsive transcripts show a time of day-dependent response, including many previously characterized heat-response genes. This temporal sensitivity implies a complex interaction between time and temperature where daily variations in basal transcription influence thermotolerance. When we examined these transcriptional responses, we uncovered novel night-response genes and cis-regulatory elements, underpinning new aspects of heat stress responses not previously appreciated. Exploiting this temporal variation can be applied to most environmental responses to understand the underlying network wiring. Therefore, we propose that using time as a perturbagen is an approach that will enhance our understanding of plant regulatory networks and responses to environmental stresses.
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Affiliation(s)
- Dmitry O. Grinevich
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, USA
| | - Jigar S. Desai
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, USA
| | - Kevin P. Stroup
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, USA
| | - Jiaqi Duan
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, USA
| | - Erin Slabaugh
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, USA
| | - Colleen J. Doherty
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, USA
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